From 4ced0e587941f845b2372622fcf1eacb065e7f28 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Thu, 23 Apr 2026 15:17:43 +0000
Subject: [PATCH 01/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index a63d72eac..90c49e338 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.3.0+921",
+  "version": "v1.3.0+925",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/225abab78b144af30373e7dd973eb08a78cfa7b7"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/453a8fc8f27c1b2d34bd2006f643cd4fff7254d1"
 }

From 37bc32bf1a424153034bc6b4ffcb4cc79d9941cd Mon Sep 17 00:00:00 2001
From: Keerthi Humsika Kattamudi <humsikak2000@gmail.com>
Date: Fri, 1 May 2026 18:45:57 -0400
Subject: [PATCH 02/48] [BI-2844] BI-2844 - Updated germplasm import template
 download link to v12 reference.

---
 src/views/import/ImportGermplasm.vue | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/views/import/ImportGermplasm.vue b/src/views/import/ImportGermplasm.vue
index 6fe45e0ca..620211a2b 100644
--- a/src/views/import/ImportGermplasm.vue
+++ b/src/views/import/ImportGermplasm.vue
@@ -31,7 +31,7 @@
 
       <template v-slot:importInfoTemplateMessageBox>
         <ImportInfoTemplateMessageBox v-bind:import-type-name="'Germplasm'"
-                                      v-bind:template-url="'https://www.dropbox.com/scl/fi/sezsc80x7vxaeor7i8vvn/bi_germplasm_import_template_v11.xls?rlkey=91gf971xi293zqn2x7ago1223&st=46nu0kte&dl=1'"
+                                      v-bind:template-url="'https://www.dropbox.com/scl/fi/qavhqq8tzxr058cldqzgw/bi_germplasm_import_template_v12.xls?rlkey=efxt6a0c441xd65x9zvvtko9n&st=5y2692no&dl=1'"
                                       class="mb-5">
           <strong>Before You Import...</strong>
           <br/>

From 21fb51b61471242264a9e778cdda89d017de27dc Mon Sep 17 00:00:00 2001
From: Keerthi Humsika Kattamudi <humsikak2000@gmail.com>
Date: Mon, 4 May 2026 13:16:13 -0400
Subject: [PATCH 03/48] [BI-2844] BI-2844 - Updated germplasm import template
 download link to v12 reference.

---
 src/views/import/ImportGermplasm.vue | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/views/import/ImportGermplasm.vue b/src/views/import/ImportGermplasm.vue
index 620211a2b..2bc95a1f6 100644
--- a/src/views/import/ImportGermplasm.vue
+++ b/src/views/import/ImportGermplasm.vue
@@ -31,7 +31,7 @@
 
       <template v-slot:importInfoTemplateMessageBox>
         <ImportInfoTemplateMessageBox v-bind:import-type-name="'Germplasm'"
-                                      v-bind:template-url="'https://www.dropbox.com/scl/fi/qavhqq8tzxr058cldqzgw/bi_germplasm_import_template_v12.xls?rlkey=efxt6a0c441xd65x9zvvtko9n&st=5y2692no&dl=1'"
+                                      v-bind:template-url="'https://www.dropbox.com/scl/fi/qavhqq8tzxr058cldqzgw/bi_germplasm_import_template_v12.xls?rlkey=igc1rfim5pjadkpdeu67uno35&st=5h45utag&dl=1'"
                                       class="mb-5">
           <strong>Before You Import...</strong>
           <br/>

From 7d419e8d222771b7278af3036bfc9ab483ffd37f Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Mon, 4 May 2026 17:25:15 +0000
Subject: [PATCH 04/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index 90c49e338..873f11ed0 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.3.0+925",
+  "version": "v1.3.0+927",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/453a8fc8f27c1b2d34bd2006f643cd4fff7254d1"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/fa0c131ff60c41316c58f20ec66e288b5cce3423"
 }

From 3fb944909654419464a20ab268e8330ba0920878 Mon Sep 17 00:00:00 2001
From: Keerthi Humsika Kattamudi <humsikak2000@gmail.com>
Date: Wed, 6 May 2026 14:59:26 -0700
Subject: [PATCH 05/48] [BI-2843] BI-2843 - Updated the Genotype upload page.

---
 src/breeding-insight/dao/GenoDAO.ts         |  4 +-
 src/breeding-insight/service/GenoService.ts |  8 ++--
 src/views/import/ImportGeno.vue             | 51 ++++++++++-----------
 3 files changed, 29 insertions(+), 34 deletions(-)

diff --git a/src/breeding-insight/dao/GenoDAO.ts b/src/breeding-insight/dao/GenoDAO.ts
index dca9a1220..7df9fb97b 100644
--- a/src/breeding-insight/dao/GenoDAO.ts
+++ b/src/breeding-insight/dao/GenoDAO.ts
@@ -20,14 +20,14 @@ import { BiResponse, Response } from '@/breeding-insight/model/BiResponse';
 
 export class GenoDAO {
 
-  static async uploadData(programId: string, experimentId: string, file: File): Promise<any> {
+  static async uploadData(programId: string, submissionId: string, file: File): Promise<any> {
 
     var formData = new FormData();
     formData.append("file", file);
     formData.append("filename", file.name);
 
     const {data} = await api.call({
-      url: `${process.env.VUE_APP_BI_API_V1_PATH}/programs/${programId}/experiments/${experimentId}/geno/import`,
+      url: `${process.env.VUE_APP_BI_API_V1_PATH}/programs/${programId}/submissions/${submissionId}/geno/import`,
       method: 'post', data: formData}
     ) as Response;
 
diff --git a/src/breeding-insight/service/GenoService.ts b/src/breeding-insight/service/GenoService.ts
index e332c2ec7..245569aac 100644
--- a/src/breeding-insight/service/GenoService.ts
+++ b/src/breeding-insight/service/GenoService.ts
@@ -22,15 +22,15 @@ import { GermplasmGenotype } from '@/breeding-insight/model/GermplasmGenotype';
 
 export class GenoService {
 
-  static async uploadData(programId: string, experimentId: string, file: File): Promise<ImportResponse> {
+  static async uploadData(programId: string, submissionId: string, file: File): Promise<ImportResponse> {
     if (!programId) {
       throw 'Program ID not provided';
     }
-    if (!experimentId) {
-      throw 'Experiment ID not provided';
+    if (!submissionId) {
+      throw 'Submission ID not provided';
     }
 
-    const response: BiResponse = await GenoDAO.uploadData(programId, experimentId, file);
+    const response: BiResponse = await GenoDAO.uploadData(programId, submissionId, file);
     const data: any = response.result;
     return new ImportResponse(data);
   }
diff --git a/src/views/import/ImportGeno.vue b/src/views/import/ImportGeno.vue
index f21358354..d7ec42338 100644
--- a/src/views/import/ImportGeno.vue
+++ b/src/views/import/ImportGeno.vue
@@ -25,7 +25,7 @@
               <div class="has-text-dark">
                 <strong>Before You Import...</strong>
                 <br/>
-                Ensure that Sample IDs match to an Exp Unit ID within the chosen experiment
+                Ensure that the Sample IDs in the .vcf import file match to Sample IDs within the chosen sample submission.
               </div>
             </div>
           </div>
@@ -53,10 +53,10 @@
             <div class="columns is-vcentered">
               <div class="column">
                 <BasicSelectField
-                    v-model="upload.experimentId"
-                    v-bind:validations="validations.experimentId"
-                    v-bind:options="experimentOptions"
-                    v-bind:field-name="'Experiment'"
+                    v-model="upload.submissionId"
+                    v-bind:validations="validations.submissionId"
+                    v-bind:options="submissionOptions"
+                    v-bind:field-name="'Sample Submission Project Name'"
                 />
               </div>
             </div>
@@ -83,22 +83,20 @@
 import { Component } from 'vue-property-decorator';
 import ProgramsBase from '@/components/program/ProgramsBase.vue';
 import { DataFormEventBusHandler } from '@/components/forms/DataFormEventBusHandler';
-import { Trial } from '@/breeding-insight/model/Trial';
 import { mapGetters } from 'vuex';
 import { Program } from '@/breeding-insight/model/Program';
-import { BrAPIService, BrAPIType } from '@/breeding-insight/service/BrAPIService';
-import { SortOrder } from '@/breeding-insight/model/Sort';
 import NewDataForm from '@/components/forms/NewDataForm.vue';
 import BasicInputField from '@/components/forms/BasicInputField.vue';
 import BasicSelectField from '@/components/forms/BasicSelectField.vue';
 import FileSelector from '@/components/file-import/FileSelector.vue';
-import { BrAPIUtils } from '@/breeding-insight/utils/BrAPIUtils';
 import { required } from 'vuelidate/lib/validators';
 import { ImportResponse } from '@/breeding-insight/model/import/ImportResponse';
 import { GenoService } from '@/breeding-insight/service/GenoService';
 import { DEACTIVATE_ALL_NOTIFICATIONS } from '@/store/mutation-types';
 import { ImportMappingConfig } from '@/breeding-insight/model/import/ImportMapping';
 import { ImportService } from '@/breeding-insight/service/ImportService';
+import { SampleSubmission } from '@/breeding-insight/model/SampleSubmission';
+import { SampleSubmissionService } from '@/breeding-insight/service/SampleSubmissionService';
 
 @Component({
   components: {
@@ -112,7 +110,7 @@ import { ImportService } from '@/breeding-insight/service/ImportService';
 })
 export default class ImportExperiment extends ProgramsBase {
   private activeProgram?: Program;
-  private experimentOptions: Array<ExperimentOption> = [];
+  private submissionOptions: Array<SubmissionOption> = [];
   private importState: DataFormEventBusHandler = new DataFormEventBusHandler();
   private currentImport?: ImportResponse = new ImportResponse({});
   private systemImportTemplateId?: string;
@@ -120,33 +118,30 @@ export default class ImportExperiment extends ProgramsBase {
   upload: Upload = new Upload({});
 
   uploadValidations = {
-    experimentId: {required},
+    submissionId: {required},
     file: {required}
   }
 
   mounted() {
-    this.loadExperiments();
+    this.loadSampleSubmissions();
     this.getSystemImportTemplateMapping();
   }
 
-  async loadExperiments () {
-    let expResponse = await BrAPIService.get(BrAPIType.EXPERIMENT, this.activeProgram!.id!, { field: undefined, order: SortOrder.Ascending }, { page: 0, pageSize: 1000 }, {"metadata": false});
-    if (expResponse.result && expResponse.result.data) {
-      this.experimentOptions = expResponse.result.data.map((exp: Trial) => {
-        let breedingInsightId = BrAPIUtils.getBreedingInsightId(exp.externalReferences!, "/trials");
-        return new ExperimentOption({
-          id: breedingInsightId!,
-          name: exp.trialName!
+  async loadSampleSubmissions() {
+    const submissions = await SampleSubmissionService.getProgramSampleSubmissions(this.activeProgram!.id!);
+    this.submissionOptions = submissions.map((submission: SampleSubmission) => {
+        return new SubmissionOption({
+              id: submission.id!,
+              name: submission.name!
         });
       });
-      this.$log.debug(JSON.stringify(this.experimentOptions));
+    this.$log.debug(JSON.stringify(this.submissionOptions));
     }
-  }
 
   async save() {
     try {
       this.$store.commit( DEACTIVATE_ALL_NOTIFICATIONS );
-      this.currentImport = await GenoService.uploadData(this.activeProgram!.id!, this.upload.experimentId!, this.upload.file!);
+      this.currentImport = await GenoService.uploadData(this.activeProgram!.id!, this.upload.submissionId!, this.upload.file!);
       const response: ImportResponse = await this.getDataUpload();
       if (response.progress!.statuscode == 500) {
         this.$emit('show-error-notification', 'An unknown error has occurred when processing your import.');
@@ -208,22 +203,22 @@ export default class ImportExperiment extends ProgramsBase {
 
 }
 
-class ExperimentOption {
+class SubmissionOption {
   id: string;
   name: string;
 
-  constructor({id, name}: ExperimentOption) {
+  constructor({id, name}: SubmissionOption) {
     this.id = id;
     this.name = name;
   }
 }
 
 class Upload {
-  experimentId?: string;
+  submissionId?: string;
   file?: File;
 
-  constructor ({experimentId, file}: Upload) {
-    this.experimentId = experimentId;
+  constructor ({submissionId, file}: Upload) {
+    this.submissionId = submissionId;
     this.file = file;
   }
 }

From 08c7e821f0c6a6fa6ceb76c10300d5e477c69368 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Thu, 7 May 2026 20:23:04 +0000
Subject: [PATCH 06/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index 873f11ed0..d492f1283 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.3.0+927",
+  "version": "v1.3.0+929",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/fa0c131ff60c41316c58f20ec66e288b5cce3423"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/61680133f70e6f01ce2b5732f072f775546c06ba"
 }

From aa67f701e213520580330dfe7e26644e43ccf59d Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Wed, 13 May 2026 18:50:48 +0000
Subject: [PATCH 07/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index d492f1283..3949fd248 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.3.0+929",
+  "version": "v1.3.0+933",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/61680133f70e6f01ce2b5732f072f775546c06ba"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/62490abe931b634db4499a81dc1a651f91a55562"
 }

From 504708fbd6cd1deffe07c1f62877cccfb8e00ccb Mon Sep 17 00:00:00 2001
From: nickpalladino <np398@cornell.edu>
Date: Wed, 13 May 2026 15:17:02 -0400
Subject: [PATCH 08/48] Updated version

---
 package.json | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/package.json b/package.json
index 3949fd248..8ce2ad10c 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.3.0+933",
+  "version": "v1.4.0+933",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",

From d68843746bb3745e25bca51d5eecc91b83696734 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Wed, 13 May 2026 19:17:22 +0000
Subject: [PATCH 09/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index 8ce2ad10c..9ae587bd4 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+933",
+  "version": "v1.4.0+935",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/62490abe931b634db4499a81dc1a651f91a55562"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/504708fbd6cd1deffe07c1f62877cccfb8e00ccb"
 }

From 4e37a442413b23f2fc463a5371108cf923b7e549 Mon Sep 17 00:00:00 2001
From: nickpalladino <np398@cornell.edu>
Date: Tue, 2 Jun 2026 16:39:21 -0400
Subject: [PATCH 10/48] codex first pass

---
 AGENTS.md                                    | 105 ++++++++++
 src/breeding-insight/dao/GenoDAO.ts          |  11 +-
 src/breeding-insight/model/GenotypeImport.ts |  89 +++++++++
 src/breeding-insight/service/GenoService.ts  |  27 ++-
 src/components/layouts/UserSideBarLayout.vue |  11 ++
 src/config/AppAbility.ts                     |   4 +-
 src/config/ability.ts                        |   5 +-
 src/router/index.ts                          |  11 ++
 src/views/genotyping/Genotyping.vue          | 195 +++++++++++++++++++
 9 files changed, 453 insertions(+), 5 deletions(-)
 create mode 100644 AGENTS.md
 create mode 100644 src/breeding-insight/model/GenotypeImport.ts
 create mode 100644 src/views/genotyping/Genotyping.vue

diff --git a/AGENTS.md b/AGENTS.md
new file mode 100644
index 000000000..bf18a5c45
--- /dev/null
+++ b/AGENTS.md
@@ -0,0 +1,105 @@
+# AGENTS.md
+
+Instructions for automated coding agents working in this repository.
+
+## Scope
+
+These instructions apply to the whole repository.
+
+## Project Overview
+
+`bi-web` is a Vue 2.7 frontend for Breeding Insight. It uses Vue CLI 4,
+TypeScript, Vuex, Vue Router, Buefy/Bulma, Vuelidate, CASL abilities, and an
+axios wrapper for API calls.
+
+Important directories:
+
+- `src/views`: route-level pages.
+- `src/components`: reusable Vue components and layout templates.
+- `src/store`: Vuex root store and feature modules.
+- `src/breeding-insight/model`: application domain models.
+- `src/breeding-insight/dao`: raw API access using `src/util/api`.
+- `src/breeding-insight/service`: business logic and response mapping.
+- `src/breeding-insight/brapi/model`: generated BrAPI/OpenAPI models.
+- `tests/unit`: Jest and Vue Test Utils unit tests.
+- `tests/e2e`: Cypress end-to-end tests.
+- `task`: Node task wrappers used by npm scripts.
+
+## Setup
+
+- Use npm and `package-lock.json`; do not introduce Yarn or pnpm.
+- Use `npm install` for local setup, or `npm ci` for clean/install-in-CI style
+  runs.
+- The Dockerfile uses Node 14 and npm 8.12.1. Avoid dependency or syntax changes
+  that require a newer runtime unless the runtime is intentionally updated.
+- `npm run githooks` configures the repository's commit message hook.
+- Local environment overrides belong in ignored `.env.local` or `.env.*.local`
+  files, not in tracked env files.
+
+## Common Commands
+
+- `npm run serve`: start the dev server. The default port is `8080`; `PORT`
+  overrides it.
+- `npm run build`: production build. The task wrapper runs npm audit checks
+  before building.
+- `npm run lint`: run Vue CLI ESLint.
+- `npm run test:unit`: run existing Jest unit tests only when explicitly
+  requested.
+- `npm run test:e2e`: run existing Cypress e2e tests only when explicitly
+  requested.
+- `npm run test:accessibility`: run pa11y accessibility checks. This expects
+  the dev server to be running and `task/.pa11yTargets.json` to exist; use it
+  only when explicitly requested.
+
+This repository does not add or maintain tests as part of normal feature or bug
+work. Do not create new tests, update existing tests, add test-only selectors,
+or spend time repairing unrelated test failures unless the user explicitly asks
+for test work. Prefer `npm run lint`, `npm run build`, or a focused manual smoke
+check for verification when practical.
+
+## Coding Conventions
+
+- Preserve the existing Apache 2.0 notice header when editing files that have
+  it. Add the same header to new `.ts`, `.js`, and `.vue` source files.
+- Keep TypeScript strictness in mind. Prefer explicit domain models and local
+  service/DAO patterns over loose `any` unless surrounding code already forces
+  it.
+- Use the `@/` alias for imports from `src` when consistent with nearby files.
+- Vue components commonly use class-style components with
+  `vue-property-decorator`; match the surrounding component style.
+- ESLint requires long-form Vue directives: use `v-bind:` and `v-on:` instead
+  of shorthand in templates.
+- Keep API calls centralized through `src/util/api`. DAOs should make HTTP
+  requests, while services should handle application mapping and user-facing
+  error logic.
+- `src/breeding-insight/brapi/model` files are generated by Swagger/OpenAPI.
+  Do not hand-edit them unless the task explicitly calls for it.
+- Reuse existing layouts in `src/components/layouts` and visual conventions
+  from the authenticated `/style-guide` page. Prefer existing Buefy/Bulma
+  patterns and the configured Feather icon pack.
+
+## Configuration Notes
+
+`vue.config.js` derives frontend runtime values from environment variables:
+
+- `VUE_APP_BI_API_ROOT` defaults to `http://localhost`.
+- `VUE_APP_BI_API_V1_PATH` is computed as `${VUE_APP_BI_API_ROOT}/v1`.
+- `VUE_APP_LOG_LEVEL` defaults to `error`.
+- `VUE_APP_BRAPI_VENDOR_SUBMISSION_ENABLED` and
+  `VUE_APP_ALTERNATE_AUTHENTICATION_ENABLED` are enabled only when set to the
+  string `true`.
+
+`.env.development` maps these values from shell environment variables such as
+`API_BASE_URL`, `SANDBOX_MODE`, and `WEB_LOG_LEVEL`.
+
+## Working Safely
+
+- Check `git status --short` before editing and do not overwrite unrelated
+  local changes.
+- Do not commit generated output, `node_modules`, `dist`, local env files, IDE
+  files, Cypress screenshots/videos, or task logs.
+- Do not change `package-lock.json` unless dependency changes are intentional.
+- Keep changes scoped to the requested behavior. Avoid broad refactors unless
+  they are required to make the requested change safely.
+- If backend behavior is relevant, make the frontend assumption explicit in the
+  code review or final notes; this repository only contains the web client.
diff --git a/src/breeding-insight/dao/GenoDAO.ts b/src/breeding-insight/dao/GenoDAO.ts
index 7df9fb97b..e7eb8003f 100644
--- a/src/breeding-insight/dao/GenoDAO.ts
+++ b/src/breeding-insight/dao/GenoDAO.ts
@@ -42,4 +42,13 @@ export class GenoDAO {
 
     return new BiResponse(data);
   }
-}
\ No newline at end of file
+
+  static async fetchGenotypeImports(programId: string): Promise<BiResponse> {
+    const {data} = await api.call({
+      url: `${process.env.VUE_APP_BI_API_V1_PATH}/programs/${programId}/geno/imports`,
+      method: 'get'
+    }) as Response;
+
+    return new BiResponse(data);
+  }
+}
diff --git a/src/breeding-insight/model/GenotypeImport.ts b/src/breeding-insight/model/GenotypeImport.ts
new file mode 100644
index 000000000..cd8c47acc
--- /dev/null
+++ b/src/breeding-insight/model/GenotypeImport.ts
@@ -0,0 +1,89 @@
+/*
+ * See the NOTICE file distributed with this work for additional information
+ * regarding copyright ownership.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+interface DisplayUser {
+  name?: string;
+  email?: string;
+}
+
+type DisplayUserValue = string | DisplayUser;
+
+export interface GenotypeImportResponse {
+  id?: string;
+  genotypeImportId?: string;
+  importerImportId?: string;
+  sampleSubmissionId?: string;
+  sampleSubmissionDbId?: string;
+  submissionId?: string;
+  projectName?: string;
+  sampleSubmissionName?: string;
+  sampleSubmissionCreatedBy?: DisplayUserValue;
+  sampleSubmissionCreatedByUser?: DisplayUserValue;
+  sampleSubmissionCreatedByName?: string;
+  genotypingFileName?: string;
+  fileName?: string;
+  uploadFileName?: string;
+  genotypingImportDate?: string;
+  genotypingImportedDate?: string;
+  importDate?: string;
+  importedAt?: string;
+  createdAt?: string;
+  genotypingImportedBy?: DisplayUserValue;
+  genotypingImportedByUser?: DisplayUserValue;
+  genotypingImportedByName?: string;
+  importedBy?: DisplayUserValue;
+  importedByUser?: DisplayUserValue;
+}
+
+export class GenotypeImport {
+  id?: string;
+  sampleSubmissionId?: string;
+  projectName?: string;
+  sampleSubmissionCreatedBy?: string;
+  genotypingFileName?: string;
+  genotypingImportDate?: string;
+  genotypingImportedBy?: string;
+
+  constructor(record: GenotypeImportResponse = {}) {
+    this.id = record.id || record.genotypeImportId || record.importerImportId;
+    this.sampleSubmissionId = record.sampleSubmissionId || record.sampleSubmissionDbId || record.submissionId;
+    this.projectName = record.projectName || record.sampleSubmissionName;
+    this.sampleSubmissionCreatedBy = GenotypeImport.displayUser(
+        record.sampleSubmissionCreatedBy || record.sampleSubmissionCreatedByUser || record.sampleSubmissionCreatedByName
+    );
+    this.genotypingFileName = record.genotypingFileName || record.fileName || record.uploadFileName;
+    this.genotypingImportDate = record.genotypingImportDate || record.genotypingImportedDate || record.importDate ||
+        record.importedAt || record.createdAt;
+    this.genotypingImportedBy = GenotypeImport.displayUser(
+        record.genotypingImportedBy || record.genotypingImportedByUser || record.genotypingImportedByName ||
+        record.importedBy || record.importedByUser
+    );
+  }
+
+  private static displayUser(value?: DisplayUserValue): string | undefined {
+    if (typeof value === 'string') {
+      return value;
+    }
+    if (value && value.name) {
+      return value.name;
+    }
+    if (value && value.email) {
+      return value.email;
+    }
+    return undefined;
+  }
+}
diff --git a/src/breeding-insight/service/GenoService.ts b/src/breeding-insight/service/GenoService.ts
index 245569aac..b862eeb27 100644
--- a/src/breeding-insight/service/GenoService.ts
+++ b/src/breeding-insight/service/GenoService.ts
@@ -19,6 +19,7 @@ import { GenoDAO } from '@/breeding-insight/dao/GenoDAO';
 import { BiResponse } from '@/breeding-insight/model/BiResponse';
 import { ImportResponse } from '@/breeding-insight/model/import/ImportResponse';
 import { GermplasmGenotype } from '@/breeding-insight/model/GermplasmGenotype';
+import { GenotypeImport, GenotypeImportResponse } from '@/breeding-insight/model/GenotypeImport';
 
 export class GenoService {
 
@@ -47,4 +48,28 @@ export class GenoService {
 
     return resp.result as GermplasmGenotype;
   }
-}
\ No newline at end of file
+
+  static async fetchGenotypeImports(programId: string): Promise<GenotypeImport[]> {
+    if (!programId) {
+      throw 'Program ID not provided';
+    }
+
+    const response = await GenoDAO.fetchGenotypeImports(programId);
+    const responseData = response.result && response.result.data ? response.result.data : response.result;
+
+    if (!Array.isArray(responseData)) {
+      return [];
+    }
+
+    return responseData
+        .map((record: GenotypeImportResponse) => new GenotypeImport(record))
+        .sort((first: GenotypeImport, second: GenotypeImport) => {
+          return this.dateValue(second.genotypingImportDate) - this.dateValue(first.genotypingImportDate);
+        });
+  }
+
+  private static dateValue(date?: string): number {
+    const value = Date.parse(date || '');
+    return Number.isNaN(value) ? 0 : value;
+  }
+}
diff --git a/src/components/layouts/UserSideBarLayout.vue b/src/components/layouts/UserSideBarLayout.vue
index 2498cf42c..9c7b9f5e7 100644
--- a/src/components/layouts/UserSideBarLayout.vue
+++ b/src/components/layouts/UserSideBarLayout.vue
@@ -140,6 +140,16 @@
                 Sample Management
               </router-link>
             </li>
+            <li
+              v-if="$ability.can('access', 'Genotyping')"
+            >
+              <router-link
+                v-bind:id="genotypingMenuId"
+                v-bind:to="{name: 'genotyping', params: {programId: activeProgram.id}}"
+              >
+                Genotyping
+              </router-link>
+            </li>
             <!--
             <li>
               <a>Labels</a>
@@ -243,6 +253,7 @@
     private homeMenuId: string = "usersidebarlayout-home-menu";
     private importFileMenuId: string = "usersidebarlayout-import-file-menu";
     private sampleMgmtMenuId: string = "usersidebarlayout-sample-management-menu";
+    private genotypingMenuId: string = "usersidebarlayout-genotyping-menu";
     private ontologyMenuId: string = "usersidebarlayout-ontology-menu";
     private programManagementMenuId: string = "usersidebarlayout-program-management-menu";
     private jobManagementMenuId: string = "usersidebarlayout-job-management-menu";
diff --git a/src/config/AppAbility.ts b/src/config/AppAbility.ts
index 966824c45..da6be6bb1 100644
--- a/src/config/AppAbility.ts
+++ b/src/config/AppAbility.ts
@@ -19,8 +19,8 @@ import {Ability, AbilityClass} from '@casl/ability';
 
 type Actions = 'manage' | 'create' | 'read' | 'update' | 'delete' | 'archive' | 'access' | 'submit';
 type Subjects = 'ProgramUser' | 'Location' | 'User' | 'AdminSection' | 'Trait' | 'Import' | 'ProgramConfiguration' | 'Submission'
-    | 'Experiment' | 'Germplasm' | 'Ontology' | 'SampleManagement' | 'ProgramAdministration' | 'JobManagement' | 'Collaborator' | 'BrAPI'
+    | 'Experiment' | 'Germplasm' | 'Ontology' | 'SampleManagement' | 'Genotyping' | 'ProgramAdministration' | 'JobManagement' | 'Collaborator' | 'BrAPI'
     | 'SubEntityDataset' | 'List';
 
 export type AppAbility = Ability<[Actions, Subjects]>;
-export const AppAbility = Ability as AbilityClass<AppAbility>;
\ No newline at end of file
+export const AppAbility = Ability as AbilityClass<AppAbility>;
diff --git a/src/config/ability.ts b/src/config/ability.ts
index 8a8059250..e52ac3725 100644
--- a/src/config/ability.ts
+++ b/src/config/ability.ts
@@ -30,6 +30,7 @@ const rolePermissions: Record<string, DefinePermissions> = {
     can('access', 'Germplasm');
     can('access', 'ProgramAdministration');
     can('access', 'SampleManagement');
+    can('access', 'Genotyping');
     can('access', 'BrAPI');
     can('access', 'JobManagement');
   },
@@ -57,6 +58,7 @@ const rolePermissions: Record<string, DefinePermissions> = {
     can('access', 'Ontology');
     can('access', 'Germplasm');
     can('access', 'SampleManagement');
+    can('access', 'Genotyping');
     can('delete', 'Submission');
     can('access', 'ProgramAdministration');
     can('access', 'BrAPI');
@@ -80,6 +82,7 @@ const rolePermissions: Record<string, DefinePermissions> = {
     can('access', 'Ontology');
     can('access', 'Germplasm');
     can('access', 'SampleManagement');
+    can('access', 'Genotyping');
     can('access', 'ProgramAdministration');
     can('access', 'BrAPI');
     can('access', 'JobManagement');
@@ -127,4 +130,4 @@ export function defineAbilityFor(user: User | undefined, program: Program | unde
   }
 
   return builder.build();
-}
\ No newline at end of file
+}
diff --git a/src/router/index.ts b/src/router/index.ts
index afbd08f38..0bebec56a 100644
--- a/src/router/index.ts
+++ b/src/router/index.ts
@@ -73,6 +73,7 @@ import ImportGeno from "@/views/import/ImportGeno.vue";
 import ImportSample from "@/views/import/ImportSample.vue";
 import SampleManagement from '@/views/sample-mgmt/SampleManagement.vue';
 import SubmissionDetails from '@/views/sample-mgmt/SubmissionDetails.vue';
+import Genotyping from '@/views/genotyping/Genotyping.vue';
 
 Vue.use(VueRouter);
 
@@ -466,6 +467,16 @@ const routes = [
     component: SampleManagement,
     beforeEnter: processProgramNavigation
   },
+  {
+    path: '/programs/:programId/genotyping',
+    name: 'genotyping',
+    meta: {
+      title: 'Genotyping',
+      layout: layouts.userSideBar
+    },
+    component: Genotyping,
+    beforeEnter: processProgramNavigation
+  },
   {
     path: '/programs/:programId/sample-management/:submissionId',
     name: 'submission-details',
diff --git a/src/views/genotyping/Genotyping.vue b/src/views/genotyping/Genotyping.vue
new file mode 100644
index 000000000..93cdc62b0
--- /dev/null
+++ b/src/views/genotyping/Genotyping.vue
@@ -0,0 +1,195 @@
+<!--
+  - See the NOTICE file distributed with this work for additional information
+  - regarding copyright ownership.
+  -
+  - Licensed under the Apache License, Version 2.0 (the "License");
+  - you may not use this file except in compliance with the License.
+  - You may obtain a copy of the License at
+  -
+  -     http://www.apache.org/licenses/LICENSE-2.0
+  -
+  - Unless required by applicable law or agreed to in writing, software
+  - distributed under the License is distributed on an "AS IS" BASIS,
+  - WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+  - See the License for the specific language governing permissions and
+  - limitations under the License.
+  -->
+
+<template>
+  <div class="container genotyping">
+    <div class="columns is-centered">
+      <div class="column">
+        <h3 class="is-4 title">
+          Genotyping
+        </h3>
+        <div class="columns">
+          <div class="column is-whole has-text-right buttons">
+            <button
+              v-if="$ability.can('create', 'Import')"
+              class="button is-primary"
+              v-on:click="importGenotypingFile"
+            >
+              <span class="icon is-small">
+                <PlusCircleIcon
+                  size="1.5x"
+                  aria-hidden="true"
+                />
+              </span>
+              <span>
+                Import Genotyping File
+              </span>
+            </button>
+          </div>
+        </div>
+
+        <ExpandableTable
+          v-bind:records.sync="genotypeImports"
+          v-bind:loading="loading"
+          v-bind:pagination="paginationController"
+          v-bind:default-sort="['data.genotypingImportDate', 'desc']"
+          v-bind:debounce-search="400"
+          v-bind:editable="false"
+          hoverable
+          v-on:click="navigateToSampleSubmission"
+        >
+          <b-table-column
+            v-slot="props"
+            field="data.projectName"
+            label="Project Name"
+            sortable
+            searchable
+            v-bind:th-attrs="(column) => ({scope:'col'})"
+          >
+            <router-link
+              v-if="props.row.data.sampleSubmissionId"
+              v-bind:to="{name: 'submission-details', params: {programId: activeProgram.id, submissionId: props.row.data.sampleSubmissionId}}"
+            >
+              {{ displayValue(props.row.data.projectName) }}
+            </router-link>
+            <span v-if="!props.row.data.sampleSubmissionId">
+              {{ displayValue(props.row.data.projectName) }}
+            </span>
+          </b-table-column>
+          <b-table-column
+            v-slot="props"
+            field="data.sampleSubmissionCreatedBy"
+            label="Sample Submission Created By"
+            sortable
+            searchable
+            v-bind:th-attrs="(column) => ({scope:'col'})"
+          >
+            {{ displayValue(props.row.data.sampleSubmissionCreatedBy) }}
+          </b-table-column>
+          <b-table-column
+            v-slot="props"
+            field="data.genotypingFileName"
+            label="Genotyping File Name"
+            sortable
+            searchable
+            v-bind:th-attrs="(column) => ({scope:'col'})"
+          >
+            {{ displayValue(props.row.data.genotypingFileName) }}
+          </b-table-column>
+          <b-table-column
+            v-slot="props"
+            field="data.genotypingImportDate"
+            label="Genotyping Import Date"
+            sortable
+            searchable
+            v-bind:th-attrs="(column) => ({scope:'col'})"
+          >
+            {{ displayValue(props.row.data.genotypingImportDate) }}
+          </b-table-column>
+          <b-table-column
+            v-slot="props"
+            field="data.genotypingImportedBy"
+            label="Genotyping Imported By"
+            sortable
+            searchable
+            v-bind:th-attrs="(column) => ({scope:'col'})"
+          >
+            {{ displayValue(props.row.data.genotypingImportedBy) }}
+          </b-table-column>
+
+          <template v-slot:emptyMessage>
+            <p class="has-text-weight-bold">
+              No genotype imports were found
+            </p>
+          </template>
+        </ExpandableTable>
+      </div>
+    </div>
+  </div>
+</template>
+
+<script lang="ts">
+import {Component} from 'vue-property-decorator';
+import {mapGetters} from 'vuex';
+import {PlusCircleIcon} from 'vue-feather-icons';
+import ProgramsBase from '@/components/program/ProgramsBase.vue';
+import ExpandableTable from '@/components/tables/expandableTable/ExpandableTable.vue';
+import {Program} from '@/breeding-insight/model/Program';
+import {PaginationController} from '@/breeding-insight/model/view_models/PaginationController';
+import {GenotypeImport} from '@/breeding-insight/model/GenotypeImport';
+import {GenoService} from '@/breeding-insight/service/GenoService';
+import {TableRow} from '@/breeding-insight/model/view_models/TableRow';
+
+@Component({
+  components: {
+    ExpandableTable,
+    PlusCircleIcon
+  },
+  computed: {
+    ...mapGetters([
+      'activeProgram'
+    ])
+  }
+})
+export default class Genotyping extends ProgramsBase {
+  private activeProgram?: Program;
+  private loading = true;
+  private genotypeImports: Array<GenotypeImport> = new Array<GenotypeImport>();
+  private paginationController: PaginationController = new PaginationController();
+
+  mounted() {
+    this.fetchGenotypeImports();
+  }
+
+  async fetchGenotypeImports() {
+    try {
+      this.genotypeImports = await GenoService.fetchGenotypeImports(this.activeProgram!.id!);
+    } catch (e) {
+      this.$emit('show-error-notification', 'Error while trying to fetch genotype imports');
+    } finally {
+      this.loading = false;
+    }
+  }
+
+  importGenotypingFile() {
+    this.$router.push({
+      name: 'geno-import',
+      params: {
+        programId: this.activeProgram!.id!
+      }
+    });
+  }
+
+  navigateToSampleSubmission(row: TableRow<GenotypeImport>) {
+    if (!row.data.sampleSubmissionId) {
+      return;
+    }
+
+    this.$router.push({
+      name: 'submission-details',
+      params: {
+        programId: this.activeProgram!.id!,
+        submissionId: row.data.sampleSubmissionId
+      }
+    });
+  }
+
+  displayValue(value?: string): string {
+    return value || '';
+  }
+}
+</script>

From 0624896bfc6b7fe8adaa8ab9936a474356d6692c Mon Sep 17 00:00:00 2001
From: nickpalladino <np398@cornell.edu>
Date: Fri, 5 Jun 2026 14:32:51 -0400
Subject: [PATCH 11/48] Update response model to match backend

---
 src/breeding-insight/model/GenotypeImport.ts | 80 ++++----------------
 src/breeding-insight/service/GenoService.ts  |  4 +-
 src/views/genotyping/Genotyping.vue          | 10 +--
 3 files changed, 23 insertions(+), 71 deletions(-)

diff --git a/src/breeding-insight/model/GenotypeImport.ts b/src/breeding-insight/model/GenotypeImport.ts
index cd8c47acc..02e2c8e9c 100644
--- a/src/breeding-insight/model/GenotypeImport.ts
+++ b/src/breeding-insight/model/GenotypeImport.ts
@@ -15,75 +15,27 @@
  * limitations under the License.
  */
 
-interface DisplayUser {
-  name?: string;
-  email?: string;
-}
-
-type DisplayUserValue = string | DisplayUser;
-
-export interface GenotypeImportResponse {
-  id?: string;
-  genotypeImportId?: string;
-  importerImportId?: string;
-  sampleSubmissionId?: string;
-  sampleSubmissionDbId?: string;
-  submissionId?: string;
-  projectName?: string;
-  sampleSubmissionName?: string;
-  sampleSubmissionCreatedBy?: DisplayUserValue;
-  sampleSubmissionCreatedByUser?: DisplayUserValue;
-  sampleSubmissionCreatedByName?: string;
-  genotypingFileName?: string;
-  fileName?: string;
-  uploadFileName?: string;
-  genotypingImportDate?: string;
-  genotypingImportedDate?: string;
-  importDate?: string;
-  importedAt?: string;
-  createdAt?: string;
-  genotypingImportedBy?: DisplayUserValue;
-  genotypingImportedByUser?: DisplayUserValue;
-  genotypingImportedByName?: string;
-  importedBy?: DisplayUserValue;
-  importedByUser?: DisplayUserValue;
-}
-
 export class GenotypeImport {
-  id?: string;
   sampleSubmissionId?: string;
-  projectName?: string;
+  projectNameForSampleSubmission?: string;
   sampleSubmissionCreatedBy?: string;
   genotypingFileName?: string;
   genotypingImportDate?: string;
-  genotypingImportedBy?: string;
-
-  constructor(record: GenotypeImportResponse = {}) {
-    this.id = record.id || record.genotypeImportId || record.importerImportId;
-    this.sampleSubmissionId = record.sampleSubmissionId || record.sampleSubmissionDbId || record.submissionId;
-    this.projectName = record.projectName || record.sampleSubmissionName;
-    this.sampleSubmissionCreatedBy = GenotypeImport.displayUser(
-        record.sampleSubmissionCreatedBy || record.sampleSubmissionCreatedByUser || record.sampleSubmissionCreatedByName
-    );
-    this.genotypingFileName = record.genotypingFileName || record.fileName || record.uploadFileName;
-    this.genotypingImportDate = record.genotypingImportDate || record.genotypingImportedDate || record.importDate ||
-        record.importedAt || record.createdAt;
-    this.genotypingImportedBy = GenotypeImport.displayUser(
-        record.genotypingImportedBy || record.genotypingImportedByUser || record.genotypingImportedByName ||
-        record.importedBy || record.importedByUser
-    );
-  }
+  genotypingImportBy?: string;
 
-  private static displayUser(value?: DisplayUserValue): string | undefined {
-    if (typeof value === 'string') {
-      return value;
-    }
-    if (value && value.name) {
-      return value.name;
-    }
-    if (value && value.email) {
-      return value.email;
-    }
-    return undefined;
+  constructor({
+                sampleSubmissionId,
+                projectNameForSampleSubmission,
+                sampleSubmissionCreatedBy,
+                genotypingFileName,
+                genotypingImportDate,
+                genotypingImportBy
+              }: GenotypeImport = {}) {
+    this.sampleSubmissionId = sampleSubmissionId;
+    this.projectNameForSampleSubmission = projectNameForSampleSubmission;
+    this.sampleSubmissionCreatedBy = sampleSubmissionCreatedBy;
+    this.genotypingFileName = genotypingFileName;
+    this.genotypingImportDate = genotypingImportDate;
+    this.genotypingImportBy = genotypingImportBy;
   }
 }
diff --git a/src/breeding-insight/service/GenoService.ts b/src/breeding-insight/service/GenoService.ts
index b862eeb27..4c426cb7b 100644
--- a/src/breeding-insight/service/GenoService.ts
+++ b/src/breeding-insight/service/GenoService.ts
@@ -19,7 +19,7 @@ import { GenoDAO } from '@/breeding-insight/dao/GenoDAO';
 import { BiResponse } from '@/breeding-insight/model/BiResponse';
 import { ImportResponse } from '@/breeding-insight/model/import/ImportResponse';
 import { GermplasmGenotype } from '@/breeding-insight/model/GermplasmGenotype';
-import { GenotypeImport, GenotypeImportResponse } from '@/breeding-insight/model/GenotypeImport';
+import { GenotypeImport } from '@/breeding-insight/model/GenotypeImport';
 
 export class GenoService {
 
@@ -62,7 +62,7 @@ export class GenoService {
     }
 
     return responseData
-        .map((record: GenotypeImportResponse) => new GenotypeImport(record))
+        .map((record: GenotypeImport) => new GenotypeImport(record))
         .sort((first: GenotypeImport, second: GenotypeImport) => {
           return this.dateValue(second.genotypingImportDate) - this.dateValue(first.genotypingImportDate);
         });
diff --git a/src/views/genotyping/Genotyping.vue b/src/views/genotyping/Genotyping.vue
index 93cdc62b0..31f52f58b 100644
--- a/src/views/genotyping/Genotyping.vue
+++ b/src/views/genotyping/Genotyping.vue
@@ -54,7 +54,7 @@
         >
           <b-table-column
             v-slot="props"
-            field="data.projectName"
+            field="data.projectNameForSampleSubmission"
             label="Project Name"
             sortable
             searchable
@@ -64,10 +64,10 @@
               v-if="props.row.data.sampleSubmissionId"
               v-bind:to="{name: 'submission-details', params: {programId: activeProgram.id, submissionId: props.row.data.sampleSubmissionId}}"
             >
-              {{ displayValue(props.row.data.projectName) }}
+              {{ displayValue(props.row.data.projectNameForSampleSubmission) }}
             </router-link>
             <span v-if="!props.row.data.sampleSubmissionId">
-              {{ displayValue(props.row.data.projectName) }}
+              {{ displayValue(props.row.data.projectNameForSampleSubmission) }}
             </span>
           </b-table-column>
           <b-table-column
@@ -102,13 +102,13 @@
           </b-table-column>
           <b-table-column
             v-slot="props"
-            field="data.genotypingImportedBy"
+            field="data.genotypingImportBy"
             label="Genotyping Imported By"
             sortable
             searchable
             v-bind:th-attrs="(column) => ({scope:'col'})"
           >
-            {{ displayValue(props.row.data.genotypingImportedBy) }}
+            {{ displayValue(props.row.data.genotypingImportBy) }}
           </b-table-column>
 
           <template v-slot:emptyMessage>

From d1d57751336490548e8fdb86dd137bd34721d9ae Mon Sep 17 00:00:00 2001
From: nickpalladino <np398@cornell.edu>
Date: Fri, 5 Jun 2026 14:46:22 -0400
Subject: [PATCH 12/48] Updated pagination controls and added backend
 pagination calls

---
 src/breeding-insight/dao/GenoDAO.ts         |  9 +++-
 src/breeding-insight/service/GenoService.ts | 16 ++++--
 src/views/genotyping/Genotyping.vue         | 59 ++++++++++++++++++---
 3 files changed, 71 insertions(+), 13 deletions(-)

diff --git a/src/breeding-insight/dao/GenoDAO.ts b/src/breeding-insight/dao/GenoDAO.ts
index e7eb8003f..e4e083c25 100644
--- a/src/breeding-insight/dao/GenoDAO.ts
+++ b/src/breeding-insight/dao/GenoDAO.ts
@@ -17,6 +17,7 @@
 
 import * as api from '@/util/api';
 import { BiResponse, Response } from '@/breeding-insight/model/BiResponse';
+import { PaginationQuery } from '@/breeding-insight/model/PaginationQuery';
 
 export class GenoDAO {
 
@@ -43,10 +44,14 @@ export class GenoDAO {
     return new BiResponse(data);
   }
 
-  static async fetchGenotypeImports(programId: string): Promise<BiResponse> {
+  static async fetchGenotypeImports(programId: string, {page, pageSize}: PaginationQuery): Promise<BiResponse> {
     const {data} = await api.call({
       url: `${process.env.VUE_APP_BI_API_V1_PATH}/programs/${programId}/geno/imports`,
-      method: 'get'
+      method: 'get',
+      params: {
+        page,
+        pageSize
+      }
     }) as Response;
 
     return new BiResponse(data);
diff --git a/src/breeding-insight/service/GenoService.ts b/src/breeding-insight/service/GenoService.ts
index 4c426cb7b..80dc115ae 100644
--- a/src/breeding-insight/service/GenoService.ts
+++ b/src/breeding-insight/service/GenoService.ts
@@ -16,10 +16,11 @@
  */
 
 import { GenoDAO } from '@/breeding-insight/dao/GenoDAO';
-import { BiResponse } from '@/breeding-insight/model/BiResponse';
+import { BiResponse, Metadata } from '@/breeding-insight/model/BiResponse';
 import { ImportResponse } from '@/breeding-insight/model/import/ImportResponse';
 import { GermplasmGenotype } from '@/breeding-insight/model/GermplasmGenotype';
 import { GenotypeImport } from '@/breeding-insight/model/GenotypeImport';
+import { PaginationQuery } from '@/breeding-insight/model/PaginationQuery';
 
 export class GenoService {
 
@@ -49,23 +50,28 @@ export class GenoService {
     return resp.result as GermplasmGenotype;
   }
 
-  static async fetchGenotypeImports(programId: string): Promise<GenotypeImport[]> {
+  static async fetchGenotypeImports(
+      programId: string,
+      paginationQuery: PaginationQuery
+  ): Promise<[GenotypeImport[], Metadata]> {
     if (!programId) {
       throw 'Program ID not provided';
     }
 
-    const response = await GenoDAO.fetchGenotypeImports(programId);
+    const response = await GenoDAO.fetchGenotypeImports(programId, paginationQuery);
     const responseData = response.result && response.result.data ? response.result.data : response.result;
 
     if (!Array.isArray(responseData)) {
-      return [];
+      return [[], response.metadata];
     }
 
-    return responseData
+    const genotypeImports = responseData
         .map((record: GenotypeImport) => new GenotypeImport(record))
         .sort((first: GenotypeImport, second: GenotypeImport) => {
           return this.dateValue(second.genotypingImportDate) - this.dateValue(first.genotypingImportDate);
         });
+
+    return [genotypeImports, response.metadata];
   }
 
   private static dateValue(date?: string): number {
diff --git a/src/views/genotyping/Genotyping.vue b/src/views/genotyping/Genotyping.vue
index 31f52f58b..382f60c29 100644
--- a/src/views/genotyping/Genotyping.vue
+++ b/src/views/genotyping/Genotyping.vue
@@ -49,6 +49,8 @@
           v-bind:default-sort="['data.genotypingImportDate', 'desc']"
           v-bind:debounce-search="400"
           v-bind:editable="false"
+          v-bind:is-show-all-enabled="false"
+          backend-pagination
           hoverable
           v-on:click="navigateToSampleSubmission"
         >
@@ -123,7 +125,7 @@
 </template>
 
 <script lang="ts">
-import {Component} from 'vue-property-decorator';
+import {Component, Watch} from 'vue-property-decorator';
 import {mapGetters} from 'vuex';
 import {PlusCircleIcon} from 'vue-feather-icons';
 import ProgramsBase from '@/components/program/ProgramsBase.vue';
@@ -133,6 +135,8 @@ import {PaginationController} from '@/breeding-insight/model/view_models/Paginat
 import {GenotypeImport} from '@/breeding-insight/model/GenotypeImport';
 import {GenoService} from '@/breeding-insight/service/GenoService';
 import {TableRow} from '@/breeding-insight/model/view_models/TableRow';
+import {PaginationQuery} from '@/breeding-insight/model/PaginationQuery';
+import {CallStack} from '@/breeding-insight/utils/CallStack';
 
 @Component({
   components: {
@@ -150,18 +154,61 @@ export default class Genotyping extends ProgramsBase {
   private loading = true;
   private genotypeImports: Array<GenotypeImport> = new Array<GenotypeImport>();
   private paginationController: PaginationController = new PaginationController();
+  private genotypeImportCallStack!: CallStack;
 
   mounted() {
-    this.fetchGenotypeImports();
+    this.genotypeImportCallStack = new CallStack((paginationQuery: PaginationQuery) => {
+      return GenoService.fetchGenotypeImports(this.activeProgram!.id!, paginationQuery);
+    });
+    this.paginationChanged();
+  }
+
+  @Watch('paginationController', {deep: true})
+  paginationChanged() {
+    const currentCall = this.paginationController.currentCall;
+    let paginationQuery = this.paginationController.getPaginationSelections();
+
+    if (currentCall &&
+        currentCall.pageSize !== paginationQuery.pageSize &&
+        paginationQuery.page !== 1) {
+      this.paginationController.updatePage(1);
+      paginationQuery = this.paginationController.getPaginationSelections();
+    }
+
+    if (currentCall &&
+        currentCall.page === paginationQuery.page &&
+        currentCall.pageSize === paginationQuery.pageSize &&
+        currentCall.showAll === paginationQuery.showAll) {
+      return;
+    }
+
+    this.paginationController.setCurrentCall(paginationQuery);
+    this.fetchGenotypeImports(paginationQuery);
   }
 
-  async fetchGenotypeImports() {
+  async fetchGenotypeImports(paginationQuery: PaginationQuery) {
+    this.loading = true;
+    const {call, callId} = this.genotypeImportCallStack.makeCall(paginationQuery);
+
     try {
-      this.genotypeImports = await GenoService.fetchGenotypeImports(this.activeProgram!.id!);
+      const [genotypeImports, metadata] = await call;
+
+      if (!this.genotypeImportCallStack.isCurrentCall(callId)) {
+        return;
+      }
+
+      if (this.paginationController.matchesCurrentRequest(metadata.pagination)) {
+        this.genotypeImports = genotypeImports;
+        this.paginationController.setPaginationInfo(metadata.pagination);
+      }
     } catch (e) {
-      this.$emit('show-error-notification', 'Error while trying to fetch genotype imports');
+      if (this.genotypeImportCallStack.isCurrentCall(callId)) {
+        this.$emit('show-error-notification', 'Error while trying to fetch genotype imports');
+      }
     } finally {
-      this.loading = false;
+      if (this.genotypeImportCallStack.isCurrentCall(callId)) {
+        this.loading = false;
+      }
     }
   }
 

From a5060e240c7779521241b67ee3a6f6204bc4ee43 Mon Sep 17 00:00:00 2001
From: nickpalladino <np398@cornell.edu>
Date: Fri, 5 Jun 2026 14:54:30 -0400
Subject: [PATCH 13/48] Update to use backend sorting

---
 src/breeding-insight/dao/GenoDAO.ts         | 11 +++++--
 src/breeding-insight/model/Sort.ts          | 20 ++++++++++++-
 src/breeding-insight/service/GenoService.ts | 17 ++++-------
 src/views/genotyping/Genotyping.vue         | 32 ++++++++++++++++++++-
 4 files changed, 64 insertions(+), 16 deletions(-)

diff --git a/src/breeding-insight/dao/GenoDAO.ts b/src/breeding-insight/dao/GenoDAO.ts
index e4e083c25..cdc914df8 100644
--- a/src/breeding-insight/dao/GenoDAO.ts
+++ b/src/breeding-insight/dao/GenoDAO.ts
@@ -18,6 +18,7 @@
 import * as api from '@/util/api';
 import { BiResponse, Response } from '@/breeding-insight/model/BiResponse';
 import { PaginationQuery } from '@/breeding-insight/model/PaginationQuery';
+import { GenotypeImportSort } from '@/breeding-insight/model/Sort';
 
 export class GenoDAO {
 
@@ -44,13 +45,19 @@ export class GenoDAO {
     return new BiResponse(data);
   }
 
-  static async fetchGenotypeImports(programId: string, {page, pageSize}: PaginationQuery): Promise<BiResponse> {
+  static async fetchGenotypeImports(
+      programId: string,
+      {page, pageSize}: PaginationQuery,
+      {field, order}: GenotypeImportSort
+  ): Promise<BiResponse> {
     const {data} = await api.call({
       url: `${process.env.VUE_APP_BI_API_V1_PATH}/programs/${programId}/geno/imports`,
       method: 'get',
       params: {
         page,
-        pageSize
+        pageSize,
+        sortField: field,
+        sortOrder: order
       }
     }) as Response;
 
diff --git a/src/breeding-insight/model/Sort.ts b/src/breeding-insight/model/Sort.ts
index 08e81aa2d..87fb9a98f 100644
--- a/src/breeding-insight/model/Sort.ts
+++ b/src/breeding-insight/model/Sort.ts
@@ -217,4 +217,22 @@ export class GermplasmListSort {
     this.field = field;
     this.order = order;
   }
-}
\ No newline at end of file
+}
+
+export enum GenotypeImportSortField {
+  ProjectNameForSampleSubmission = 'projectNameForSampleSubmission',
+  SampleSubmissionCreatedBy = 'sampleSubmissionCreatedBy',
+  GenotypingFileName = 'genotypingFileName',
+  GenotypingImportDate = 'genotypingImportDate',
+  GenotypingImportBy = 'genotypingImportBy'
+}
+
+export class GenotypeImportSort {
+  field: GenotypeImportSortField;
+  order: SortOrder;
+
+  constructor(field: GenotypeImportSortField, order: SortOrder) {
+    this.field = field;
+    this.order = order;
+  }
+}
diff --git a/src/breeding-insight/service/GenoService.ts b/src/breeding-insight/service/GenoService.ts
index 80dc115ae..684d97a40 100644
--- a/src/breeding-insight/service/GenoService.ts
+++ b/src/breeding-insight/service/GenoService.ts
@@ -21,6 +21,7 @@ import { ImportResponse } from '@/breeding-insight/model/import/ImportResponse';
 import { GermplasmGenotype } from '@/breeding-insight/model/GermplasmGenotype';
 import { GenotypeImport } from '@/breeding-insight/model/GenotypeImport';
 import { PaginationQuery } from '@/breeding-insight/model/PaginationQuery';
+import { GenotypeImportSort } from '@/breeding-insight/model/Sort';
 
 export class GenoService {
 
@@ -52,30 +53,22 @@ export class GenoService {
 
   static async fetchGenotypeImports(
       programId: string,
-      paginationQuery: PaginationQuery
+      paginationQuery: PaginationQuery,
+      sort: GenotypeImportSort
   ): Promise<[GenotypeImport[], Metadata]> {
     if (!programId) {
       throw 'Program ID not provided';
     }
 
-    const response = await GenoDAO.fetchGenotypeImports(programId, paginationQuery);
+    const response = await GenoDAO.fetchGenotypeImports(programId, paginationQuery, sort);
     const responseData = response.result && response.result.data ? response.result.data : response.result;
 
     if (!Array.isArray(responseData)) {
       return [[], response.metadata];
     }
 
-    const genotypeImports = responseData
-        .map((record: GenotypeImport) => new GenotypeImport(record))
-        .sort((first: GenotypeImport, second: GenotypeImport) => {
-          return this.dateValue(second.genotypingImportDate) - this.dateValue(first.genotypingImportDate);
-        });
+    const genotypeImports = responseData.map((record: GenotypeImport) => new GenotypeImport(record));
 
     return [genotypeImports, response.metadata];
   }
-
-  private static dateValue(date?: string): number {
-    const value = Date.parse(date || '');
-    return Number.isNaN(value) ? 0 : value;
-  }
 }
diff --git a/src/views/genotyping/Genotyping.vue b/src/views/genotyping/Genotyping.vue
index 382f60c29..7093421ab 100644
--- a/src/views/genotyping/Genotyping.vue
+++ b/src/views/genotyping/Genotyping.vue
@@ -51,8 +51,10 @@
           v-bind:editable="false"
           v-bind:is-show-all-enabled="false"
           backend-pagination
+          backend-sorting
           hoverable
           v-on:click="navigateToSampleSubmission"
+          v-on:sort="setSort"
         >
           <b-table-column
             v-slot="props"
@@ -137,6 +139,12 @@ import {GenoService} from '@/breeding-insight/service/GenoService';
 import {TableRow} from '@/breeding-insight/model/view_models/TableRow';
 import {PaginationQuery} from '@/breeding-insight/model/PaginationQuery';
 import {CallStack} from '@/breeding-insight/utils/CallStack';
+import {
+  GenotypeImportSort,
+  GenotypeImportSortField,
+  Sort,
+  SortOrder
+} from '@/breeding-insight/model/Sort';
 
 @Component({
   components: {
@@ -155,10 +163,25 @@ export default class Genotyping extends ProgramsBase {
   private genotypeImports: Array<GenotypeImport> = new Array<GenotypeImport>();
   private paginationController: PaginationController = new PaginationController();
   private genotypeImportCallStack!: CallStack;
+  private genotypeImportSort = new GenotypeImportSort(
+      GenotypeImportSortField.GenotypingImportDate,
+      SortOrder.Descending
+  );
+  private fieldMap: {[key: string]: GenotypeImportSortField} = {
+    'data.projectNameForSampleSubmission': GenotypeImportSortField.ProjectNameForSampleSubmission,
+    'data.sampleSubmissionCreatedBy': GenotypeImportSortField.SampleSubmissionCreatedBy,
+    'data.genotypingFileName': GenotypeImportSortField.GenotypingFileName,
+    'data.genotypingImportDate': GenotypeImportSortField.GenotypingImportDate,
+    'data.genotypingImportBy': GenotypeImportSortField.GenotypingImportBy
+  };
 
   mounted() {
     this.genotypeImportCallStack = new CallStack((paginationQuery: PaginationQuery) => {
-      return GenoService.fetchGenotypeImports(this.activeProgram!.id!, paginationQuery);
+      return GenoService.fetchGenotypeImports(
+          this.activeProgram!.id!,
+          paginationQuery,
+          this.genotypeImportSort
+      );
     });
     this.paginationChanged();
   }
@@ -212,6 +235,13 @@ export default class Genotyping extends ProgramsBase {
     }
   }
 
+  setSort(field: string, order: string) {
+    if (field in this.fieldMap) {
+      this.genotypeImportSort = new GenotypeImportSort(this.fieldMap[field], Sort.orderAsBI(order));
+      this.fetchGenotypeImports(this.paginationController.currentCall!);
+    }
+  }
+
   importGenotypingFile() {
     this.$router.push({
       name: 'geno-import',

From 1163d46c59d6b8269287e38e01c21f9a3608df48 Mon Sep 17 00:00:00 2001
From: nickpalladino <np398@cornell.edu>
Date: Fri, 5 Jun 2026 15:00:52 -0400
Subject: [PATCH 14/48] Remove hoverable row highlighting

---
 src/views/genotyping/Genotyping.vue | 1 -
 1 file changed, 1 deletion(-)

diff --git a/src/views/genotyping/Genotyping.vue b/src/views/genotyping/Genotyping.vue
index 7093421ab..fef7827ee 100644
--- a/src/views/genotyping/Genotyping.vue
+++ b/src/views/genotyping/Genotyping.vue
@@ -52,7 +52,6 @@
           v-bind:is-show-all-enabled="false"
           backend-pagination
           backend-sorting
-          hoverable
           v-on:click="navigateToSampleSubmission"
           v-on:sort="setSort"
         >

From 3c02a967bfc5bdeb8adc1210dc01977cdbc64b50 Mon Sep 17 00:00:00 2001
From: nickpalladino <np398@cornell.edu>
Date: Fri, 5 Jun 2026 15:20:09 -0400
Subject: [PATCH 15/48] Updated heading text and margins for consistency

---
 src/views/genotyping/Genotyping.vue        | 200 ++++++++++-----------
 src/views/sample-mgmt/SampleManagement.vue | 154 ++++++++--------
 2 files changed, 171 insertions(+), 183 deletions(-)

diff --git a/src/views/genotyping/Genotyping.vue b/src/views/genotyping/Genotyping.vue
index fef7827ee..2d9bf47db 100644
--- a/src/views/genotyping/Genotyping.vue
+++ b/src/views/genotyping/Genotyping.vue
@@ -16,112 +16,106 @@
   -->
 
 <template>
-  <div class="container genotyping">
-    <div class="columns is-centered">
-      <div class="column">
-        <h3 class="is-4 title">
-          Genotyping
-        </h3>
-        <div class="columns">
-          <div class="column is-whole has-text-right buttons">
-            <button
-              v-if="$ability.can('create', 'Import')"
-              class="button is-primary"
-              v-on:click="importGenotypingFile"
-            >
-              <span class="icon is-small">
-                <PlusCircleIcon
-                  size="1.5x"
-                  aria-hidden="true"
-                />
-              </span>
-              <span>
-                Import Genotyping File
-              </span>
-            </button>
-          </div>
-        </div>
+  <div class="genotyping">
+    <h1 class="title">
+      Genotyping
+    </h1>
+    <button
+      v-if="$ability.can('create', 'Import')"
+      class="button is-primary is-pulled-right has-text-weight-bold"
+      v-on:click="importGenotypingFile"
+    >
+      <span class="icon is-small">
+        <PlusCircleIcon
+          size="1.5x"
+          aria-hidden="true"
+        />
+      </span>
+      <span>
+        Import Genotyping File
+      </span>
+    </button>
 
-        <ExpandableTable
-          v-bind:records.sync="genotypeImports"
-          v-bind:loading="loading"
-          v-bind:pagination="paginationController"
-          v-bind:default-sort="['data.genotypingImportDate', 'desc']"
-          v-bind:debounce-search="400"
-          v-bind:editable="false"
-          v-bind:is-show-all-enabled="false"
-          backend-pagination
-          backend-sorting
-          v-on:click="navigateToSampleSubmission"
-          v-on:sort="setSort"
+    <div class="is-clearfix" />
+
+    <ExpandableTable
+      v-bind:records.sync="genotypeImports"
+      v-bind:loading="loading"
+      v-bind:pagination="paginationController"
+      v-bind:default-sort="['data.genotypingImportDate', 'desc']"
+      v-bind:debounce-search="400"
+      v-bind:editable="false"
+      v-bind:is-show-all-enabled="false"
+      backend-pagination
+      backend-sorting
+      v-on:click="navigateToSampleSubmission"
+      v-on:sort="setSort"
+    >
+      <b-table-column
+        v-slot="props"
+        field="data.projectNameForSampleSubmission"
+        label="Project Name"
+        sortable
+        searchable
+        v-bind:th-attrs="(column) => ({scope:'col'})"
+      >
+        <router-link
+          v-if="props.row.data.sampleSubmissionId"
+          v-bind:to="{name: 'submission-details', params: {programId: activeProgram.id, submissionId: props.row.data.sampleSubmissionId}}"
         >
-          <b-table-column
-            v-slot="props"
-            field="data.projectNameForSampleSubmission"
-            label="Project Name"
-            sortable
-            searchable
-            v-bind:th-attrs="(column) => ({scope:'col'})"
-          >
-            <router-link
-              v-if="props.row.data.sampleSubmissionId"
-              v-bind:to="{name: 'submission-details', params: {programId: activeProgram.id, submissionId: props.row.data.sampleSubmissionId}}"
-            >
-              {{ displayValue(props.row.data.projectNameForSampleSubmission) }}
-            </router-link>
-            <span v-if="!props.row.data.sampleSubmissionId">
-              {{ displayValue(props.row.data.projectNameForSampleSubmission) }}
-            </span>
-          </b-table-column>
-          <b-table-column
-            v-slot="props"
-            field="data.sampleSubmissionCreatedBy"
-            label="Sample Submission Created By"
-            sortable
-            searchable
-            v-bind:th-attrs="(column) => ({scope:'col'})"
-          >
-            {{ displayValue(props.row.data.sampleSubmissionCreatedBy) }}
-          </b-table-column>
-          <b-table-column
-            v-slot="props"
-            field="data.genotypingFileName"
-            label="Genotyping File Name"
-            sortable
-            searchable
-            v-bind:th-attrs="(column) => ({scope:'col'})"
-          >
-            {{ displayValue(props.row.data.genotypingFileName) }}
-          </b-table-column>
-          <b-table-column
-            v-slot="props"
-            field="data.genotypingImportDate"
-            label="Genotyping Import Date"
-            sortable
-            searchable
-            v-bind:th-attrs="(column) => ({scope:'col'})"
-          >
-            {{ displayValue(props.row.data.genotypingImportDate) }}
-          </b-table-column>
-          <b-table-column
-            v-slot="props"
-            field="data.genotypingImportBy"
-            label="Genotyping Imported By"
-            sortable
-            searchable
-            v-bind:th-attrs="(column) => ({scope:'col'})"
-          >
-            {{ displayValue(props.row.data.genotypingImportBy) }}
-          </b-table-column>
+          {{ displayValue(props.row.data.projectNameForSampleSubmission) }}
+        </router-link>
+        <span v-if="!props.row.data.sampleSubmissionId">
+          {{ displayValue(props.row.data.projectNameForSampleSubmission) }}
+        </span>
+      </b-table-column>
+      <b-table-column
+        v-slot="props"
+        field="data.sampleSubmissionCreatedBy"
+        label="Sample Submission Created By"
+        sortable
+        searchable
+        v-bind:th-attrs="(column) => ({scope:'col'})"
+      >
+        {{ displayValue(props.row.data.sampleSubmissionCreatedBy) }}
+      </b-table-column>
+      <b-table-column
+        v-slot="props"
+        field="data.genotypingFileName"
+        label="Genotyping File Name"
+        sortable
+        searchable
+        v-bind:th-attrs="(column) => ({scope:'col'})"
+      >
+        {{ displayValue(props.row.data.genotypingFileName) }}
+      </b-table-column>
+      <b-table-column
+        v-slot="props"
+        field="data.genotypingImportDate"
+        label="Genotyping Import Date"
+        sortable
+        searchable
+        v-bind:th-attrs="(column) => ({scope:'col'})"
+      >
+        {{ displayValue(props.row.data.genotypingImportDate) }}
+      </b-table-column>
+      <b-table-column
+        v-slot="props"
+        field="data.genotypingImportBy"
+        label="Genotyping Imported By"
+        sortable
+        searchable
+        v-bind:th-attrs="(column) => ({scope:'col'})"
+      >
+        {{ displayValue(props.row.data.genotypingImportBy) }}
+      </b-table-column>
 
-          <template v-slot:emptyMessage>
-            <p class="has-text-weight-bold">
-              No genotype imports were found
-            </p>
-          </template>
-        </ExpandableTable>
-      </div>
-    </div>
+      <template v-slot:emptyMessage>
+        <p class="has-text-weight-bold">
+          No genotype imports were found
+        </p>
+      </template>
+    </ExpandableTable>
   </div>
 </template>
 
diff --git a/src/views/sample-mgmt/SampleManagement.vue b/src/views/sample-mgmt/SampleManagement.vue
index fb720caa9..0a104cf2d 100644
--- a/src/views/sample-mgmt/SampleManagement.vue
+++ b/src/views/sample-mgmt/SampleManagement.vue
@@ -16,89 +16,83 @@
   -->
 
 <template>
-  <div class="container sample-mgmt">
-    <div class="columns is-centered">
-      <div class="column">
-        <h3 class="is-4 title">Sample Management</h3>
-        <div class="columns">
-          <div class="column is-whole has-text-right buttons">
-            <button
-                v-if="$ability.can('create', 'Import')"
-                class="button is-primary"
-                v-on:click="$router.push({name: 'sample-import', params: {programId: activeProgram.id}})"
-            >
-              <span class="icon is-small">
-                <PlusCircleIcon
-                    size="1.5x"
-                    aria-hidden="true"
-                />
-              </span>
-                    <span>
-                Import Sample Submission
-              </span>
-            </button>
-          </div>
-        </div>
+  <div class="sample-mgmt">
+    <h1 class="title">
+      Sample Management
+    </h1>
+    <button
+      v-if="$ability.can('create', 'Import')"
+      class="button is-primary is-pulled-right has-text-weight-bold"
+      v-on:click="$router.push({name: 'sample-import', params: {programId: activeProgram.id}})"
+    >
+      <span class="icon is-small">
+        <PlusCircleIcon
+          size="1.5x"
+          aria-hidden="true"
+        />
+      </span>
+      <span>
+        Import Sample Submission
+      </span>
+    </button>
 
+    <div class="is-clearfix" />
 
-        <ExpandableTable
-            v-bind:records.sync="submissions"
-            v-bind:loading="loading"
-            v-bind:pagination="paginationController"
-            v-bind:default-sort="['data.createdAt', 'desc']"
-            v-bind:debounce-search="400"
-            v-bind:editable="false"
+    <ExpandableTable
+      v-bind:records.sync="submissions"
+      v-bind:loading="loading"
+      v-bind:pagination="paginationController"
+      v-bind:default-sort="['data.createdAt', 'desc']"
+      v-bind:debounce-search="400"
+      v-bind:editable="false"
+    >
+      <b-table-column field="data.name" label="Project Name" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
+        <router-link v-bind:to="{name: 'submission-details', params: {programId: activeProgram.id, submissionId: props.row.data.id}}">
+          {{ props.row.data.name }}
+        </router-link>
+      </b-table-column>
+      <b-table-column field="data.createdAt" label="Created Date" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
+        {{ props.row.data.createdAt }}
+      </b-table-column>
+      <b-table-column field="data.createdByUser.name" label="Created By" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
+        {{ props.row.data.createdByUser.name }}
+      </b-table-column>
+      <b-table-column field="data.submitted" label="Submission Status" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
+        <span
+          v-if="props.row.data.vendorStatus"
+          class="tag"
+          :class="statusTagType()"
         >
+          {{ props.row.data.submitted ? "SUBMITTED" : "NOT SUBMITTED" }}
+        </span>
+      </b-table-column>
+      <b-table-column field="data.submittedDate" label="Submitted Date" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
+        {{ props.row.data.submittedDate }}
+      </b-table-column>
+      <b-table-column field="data.vendorOrderId" label="Vendor Order ID" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
+        {{ props.row.data.vendorOrderId }}
+      </b-table-column>
+      <b-table-column field="data.vendorStatus" label="Vendor Status" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
+        <span
+          v-if="props.row.data.vendorStatus"
+          class="tag"
+          :class="statusTagType(props.row.data.vendorStatus)"
+        >
+          {{ props.row.data.vendorStatus }}
+        </span>
+      </b-table-column>
+      <b-table-column field="buttons" label="" v-slot="props" :th-attrs="(column) => ({scope:'col'})">
+        <router-link v-bind:to="{name: 'submission-details', params: {programId: activeProgram.id, submissionId: props.row.data.id}}">
+          Details
+        </router-link>
+      </b-table-column>
 
-          <b-table-column field="data.name" label="Project Name" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
-            <router-link v-bind:to="{name: 'submission-details', params: {programId: activeProgram.id, submissionId: props.row.data.id}}">
-              {{ props.row.data.name }}
-            </router-link>
-          </b-table-column>
-          <b-table-column field="data.createdAt" label="Created Date" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
-            {{ props.row.data.createdAt }}
-          </b-table-column>
-          <b-table-column field="data.createdByUser.name" label="Created By" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
-            {{ props.row.data.createdByUser.name }}
-          </b-table-column>
-          <b-table-column field="data.submitted" label="Submission Status" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
-            <span
-                v-if="props.row.data.vendorStatus"
-                class="tag"
-                :class="statusTagType()"
-            >
-            {{ props.row.data.submitted ? "SUBMITTED" : "NOT SUBMITTED" }}
-            </span>
-          </b-table-column>
-          <b-table-column field="data.submittedDate" label="Submitted Date" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
-            {{ props.row.data.submittedDate }}
-          </b-table-column>
-          <b-table-column field="data.vendorOrderId" label="Vendor Order ID" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
-            {{ props.row.data.vendorOrderId }}
-          </b-table-column>
-          <b-table-column field="data.vendorStatus" label="Vendor Status" sortable searchable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
-            <span
-                v-if="props.row.data.vendorStatus"
-                class="tag"
-                :class="statusTagType(props.row.data.vendorStatus)"
-            >
-            {{ props.row.data.vendorStatus }}
-            </span>
-          </b-table-column>
-          <b-table-column field="buttons" label="" v-slot="props" :th-attrs="(column) => ({scope:'col'})">
-            <router-link v-bind:to="{name: 'submission-details', params: {programId: activeProgram.id, submissionId: props.row.data.id}}">
-              Details
-            </router-link>
-          </b-table-column>
-
-          <template v-slot:emptyMessage>
-            <p class="has-text-weight-bold">
-              No samples have been submitted
-            </p>
-          </template>
-        </ExpandableTable>
-      </div>
-    </div>
+      <template v-slot:emptyMessage>
+        <p class="has-text-weight-bold">
+          No samples have been submitted
+        </p>
+      </template>
+    </ExpandableTable>
   </div>
 </template>
 
@@ -165,4 +159,4 @@ export default class SampleManagement extends Vue {
 
 
 }
-</script>
\ No newline at end of file
+</script>

From bd723c8fea6b656d6b1c97412da1c20337dc4689 Mon Sep 17 00:00:00 2001
From: nickpalladino <np398@cornell.edu>
Date: Fri, 5 Jun 2026 15:39:30 -0400
Subject: [PATCH 16/48] Add backend filtering support

---
 src/breeding-insight/dao/GenoDAO.ts         |  6 ++--
 src/breeding-insight/model/Sort.ts          |  2 ++
 src/breeding-insight/service/GenoService.ts |  7 +++--
 src/views/genotyping/Genotyping.vue         | 32 +++++++++++++++------
 4 files changed, 34 insertions(+), 13 deletions(-)

diff --git a/src/breeding-insight/dao/GenoDAO.ts b/src/breeding-insight/dao/GenoDAO.ts
index cdc914df8..f4167ead6 100644
--- a/src/breeding-insight/dao/GenoDAO.ts
+++ b/src/breeding-insight/dao/GenoDAO.ts
@@ -18,7 +18,7 @@
 import * as api from '@/util/api';
 import { BiResponse, Response } from '@/breeding-insight/model/BiResponse';
 import { PaginationQuery } from '@/breeding-insight/model/PaginationQuery';
-import { GenotypeImportSort } from '@/breeding-insight/model/Sort';
+import { GenotypeImportFilters, GenotypeImportSort } from '@/breeding-insight/model/Sort';
 
 export class GenoDAO {
 
@@ -48,12 +48,14 @@ export class GenoDAO {
   static async fetchGenotypeImports(
       programId: string,
       {page, pageSize}: PaginationQuery,
-      {field, order}: GenotypeImportSort
+      {field, order}: GenotypeImportSort,
+      filters: GenotypeImportFilters
   ): Promise<BiResponse> {
     const {data} = await api.call({
       url: `${process.env.VUE_APP_BI_API_V1_PATH}/programs/${programId}/geno/imports`,
       method: 'get',
       params: {
+        ...filters,
         page,
         pageSize,
         sortField: field,
diff --git a/src/breeding-insight/model/Sort.ts b/src/breeding-insight/model/Sort.ts
index 87fb9a98f..e2e9da50e 100644
--- a/src/breeding-insight/model/Sort.ts
+++ b/src/breeding-insight/model/Sort.ts
@@ -227,6 +227,8 @@ export enum GenotypeImportSortField {
   GenotypingImportBy = 'genotypingImportBy'
 }
 
+export type GenotypeImportFilters = Partial<Record<GenotypeImportSortField, string>>;
+
 export class GenotypeImportSort {
   field: GenotypeImportSortField;
   order: SortOrder;
diff --git a/src/breeding-insight/service/GenoService.ts b/src/breeding-insight/service/GenoService.ts
index 684d97a40..25191a13a 100644
--- a/src/breeding-insight/service/GenoService.ts
+++ b/src/breeding-insight/service/GenoService.ts
@@ -21,7 +21,7 @@ import { ImportResponse } from '@/breeding-insight/model/import/ImportResponse';
 import { GermplasmGenotype } from '@/breeding-insight/model/GermplasmGenotype';
 import { GenotypeImport } from '@/breeding-insight/model/GenotypeImport';
 import { PaginationQuery } from '@/breeding-insight/model/PaginationQuery';
-import { GenotypeImportSort } from '@/breeding-insight/model/Sort';
+import { GenotypeImportFilters, GenotypeImportSort } from '@/breeding-insight/model/Sort';
 
 export class GenoService {
 
@@ -54,13 +54,14 @@ export class GenoService {
   static async fetchGenotypeImports(
       programId: string,
       paginationQuery: PaginationQuery,
-      sort: GenotypeImportSort
+      sort: GenotypeImportSort,
+      filters: GenotypeImportFilters
   ): Promise<[GenotypeImport[], Metadata]> {
     if (!programId) {
       throw 'Program ID not provided';
     }
 
-    const response = await GenoDAO.fetchGenotypeImports(programId, paginationQuery, sort);
+    const response = await GenoDAO.fetchGenotypeImports(programId, paginationQuery, sort, filters);
     const responseData = response.result && response.result.data ? response.result.data : response.result;
 
     if (!Array.isArray(responseData)) {
diff --git a/src/views/genotyping/Genotyping.vue b/src/views/genotyping/Genotyping.vue
index 2d9bf47db..78f2f567b 100644
--- a/src/views/genotyping/Genotyping.vue
+++ b/src/views/genotyping/Genotyping.vue
@@ -43,12 +43,14 @@
       v-bind:loading="loading"
       v-bind:pagination="paginationController"
       v-bind:default-sort="['data.genotypingImportDate', 'desc']"
-      v-bind:debounce-search="400"
+      v-bind:search-debounce="400"
       v-bind:editable="false"
       v-bind:is-show-all-enabled="false"
+      backend-filtering
       backend-pagination
       backend-sorting
       v-on:click="navigateToSampleSubmission"
+      v-on:search="initSearch"
       v-on:sort="setSort"
     >
       <b-table-column
@@ -133,6 +135,7 @@ import {TableRow} from '@/breeding-insight/model/view_models/TableRow';
 import {PaginationQuery} from '@/breeding-insight/model/PaginationQuery';
 import {CallStack} from '@/breeding-insight/utils/CallStack';
 import {
+  GenotypeImportFilters,
   GenotypeImportSort,
   GenotypeImportSortField,
   Sort,
@@ -156,6 +159,7 @@ export default class Genotyping extends ProgramsBase {
   private genotypeImports: Array<GenotypeImport> = new Array<GenotypeImport>();
   private paginationController: PaginationController = new PaginationController();
   private genotypeImportCallStack!: CallStack;
+  private filters: GenotypeImportFilters = {};
   private genotypeImportSort = new GenotypeImportSort(
       GenotypeImportSortField.GenotypingImportDate,
       SortOrder.Descending
@@ -169,11 +173,12 @@ export default class Genotyping extends ProgramsBase {
   };
 
   mounted() {
-    this.genotypeImportCallStack = new CallStack((paginationQuery: PaginationQuery) => {
+    this.genotypeImportCallStack = new CallStack((filters: GenotypeImportFilters) => {
       return GenoService.fetchGenotypeImports(
           this.activeProgram!.id!,
-          paginationQuery,
-          this.genotypeImportSort
+          this.paginationController.currentCall!,
+          this.genotypeImportSort,
+          filters
       );
     });
     this.paginationChanged();
@@ -199,12 +204,13 @@ export default class Genotyping extends ProgramsBase {
     }
 
     this.paginationController.setCurrentCall(paginationQuery);
-    this.fetchGenotypeImports(paginationQuery);
+    this.fetchGenotypeImports();
   }
 
-  async fetchGenotypeImports(paginationQuery: PaginationQuery) {
+  @Watch('filters', {deep: true})
+  async fetchGenotypeImports() {
     this.loading = true;
-    const {call, callId} = this.genotypeImportCallStack.makeCall(paginationQuery);
+    const {call, callId} = this.genotypeImportCallStack.makeCall(this.filters);
 
     try {
       const [genotypeImports, metadata] = await call;
@@ -231,10 +237,20 @@ export default class Genotyping extends ProgramsBase {
   setSort(field: string, order: string) {
     if (field in this.fieldMap) {
       this.genotypeImportSort = new GenotypeImportSort(this.fieldMap[field], Sort.orderAsBI(order));
-      this.fetchGenotypeImports(this.paginationController.currentCall!);
+      this.fetchGenotypeImports();
     }
   }
 
+  initSearch(filters: {[key: string]: string}) {
+    this.filters = Object.keys(filters).reduce((normalizedFilters: GenotypeImportFilters, field: string) => {
+      if (field in this.fieldMap) {
+        normalizedFilters[this.fieldMap[field]] = filters[field];
+      }
+      return normalizedFilters;
+    }, {});
+    this.paginationController.updatePage(1);
+  }
+
   importGenotypingFile() {
     this.$router.push({
       name: 'geno-import',

From 5f29910823b6a7f02249a965267029d44fb60a6b Mon Sep 17 00:00:00 2001
From: "dr.phillips" <dr.phillips@IFASadmins-MacBook-Pro.local>
Date: Mon, 8 Jun 2026 10:37:51 -0400
Subject: [PATCH 17/48] [BI-2878] retreive External UID from External
 Reference, and display it.

---
 src/breeding-insight/model/Sort.ts           | 1 +
 src/breeding-insight/utils/GermplasmUtils.ts | 1 +
 src/components/germplasm/GermplasmTable.vue  | 4 ++++
 3 files changed, 6 insertions(+)

diff --git a/src/breeding-insight/model/Sort.ts b/src/breeding-insight/model/Sort.ts
index 08e81aa2d..f3ce72691 100644
--- a/src/breeding-insight/model/Sort.ts
+++ b/src/breeding-insight/model/Sort.ts
@@ -168,6 +168,7 @@ export enum GermplasmSortField {
   Pedigree = "pedigree",
   FemaleParent = "femaleParentGID",
   MaleParent = "maleParentGID",
+  ExternalUID = "externalUID",
   CreatedDate = "createdDate",
   UserName = "createdByUserName"
 }
diff --git a/src/breeding-insight/utils/GermplasmUtils.ts b/src/breeding-insight/utils/GermplasmUtils.ts
index 5415fe46d..15ffa51c7 100644
--- a/src/breeding-insight/utils/GermplasmUtils.ts
+++ b/src/breeding-insight/utils/GermplasmUtils.ts
@@ -18,6 +18,7 @@
 import moment from "moment";
 import {Germplasm} from "@/breeding-insight/brapi/model/germplasm";
 import {MOMENT_BRAPI_DATE_FORMAT} from "@/breeding-insight/utils/BrAPIDateTime";
+import {ExternalReferences} from "@/breeding-insight/brapi/model/externalReferences";
 
 // The moment.js interpretable format for Date values sent and received via the BI API.
 export const MOMENT_DATE_PERSISTED_FORMAT = 'DD/MM/YYYY h:mm:ss';
diff --git a/src/components/germplasm/GermplasmTable.vue b/src/components/germplasm/GermplasmTable.vue
index b47df5684..ff9d9a385 100644
--- a/src/components/germplasm/GermplasmTable.vue
+++ b/src/components/germplasm/GermplasmTable.vue
@@ -47,6 +47,9 @@
             v-bind:germplasmGID="Pedigree.parsePedigreeStringWithUnknowns(props.row.data.pedigree,props.row.data.additionalInfo.femaleParentUnknown,props.row.data.additionalInfo.maleParentUnknown, props.row.data.accessionNumber).maleParent"
         > </GermplasmLink>
       </b-table-column>
+      <b-table-column field="externalUID" label="External UID" sortable v-slot="props" :th-attrs="(column) => ({scope:'col'})" searchable>
+        {{ GermplasmUtils.getExternalUID(props.row.data) }}
+      </b-table-column>
       <b-table-column field="createdDate" label="Created Date" sortable v-slot="props" :th-attrs="(column) => ({scope:'col'})" searchable>
         {{ GermplasmUtils.getCreatedDate(props.row.data) }}
       </b-table-column>
@@ -134,6 +137,7 @@ export default class GermplasmTable extends Vue {
     'seedSource': GermplasmSortField.SeedSource,
     'femaleParentGID': GermplasmSortField.FemaleParent,
     'maleParentGID': GermplasmSortField.MaleParent,
+    'externalUID' : GermplasmSortField.ExternalUID,
     'createdDate': GermplasmSortField.CreatedDate,
     'createdByUserName': GermplasmSortField.UserName,
   };

From 8f3ad21b9464598eac5aeb7c15fbda0d7ecb52a8 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Wed, 10 Jun 2026 16:55:32 +0000
Subject: [PATCH 18/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index 9ae587bd4..d4fb0cfe9 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+935",
+  "version": "v1.4.0+939",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/504708fbd6cd1deffe07c1f62877cccfb8e00ccb"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/3c7f404c5d274987c017bd03a13ad16d9a8595c2"
 }

From 2b7a4f5752daa23a61027a8a325c7d34e1020085 Mon Sep 17 00:00:00 2001
From: nickpalladino <np398@cornell.edu>
Date: Tue, 16 Jun 2026 14:45:01 -0400
Subject: [PATCH 19/48] Remove row click links

---
 src/views/genotyping/Genotyping.vue | 16 ----------------
 1 file changed, 16 deletions(-)

diff --git a/src/views/genotyping/Genotyping.vue b/src/views/genotyping/Genotyping.vue
index 78f2f567b..17e21803d 100644
--- a/src/views/genotyping/Genotyping.vue
+++ b/src/views/genotyping/Genotyping.vue
@@ -49,7 +49,6 @@
       backend-filtering
       backend-pagination
       backend-sorting
-      v-on:click="navigateToSampleSubmission"
       v-on:search="initSearch"
       v-on:sort="setSort"
     >
@@ -131,7 +130,6 @@ import {Program} from '@/breeding-insight/model/Program';
 import {PaginationController} from '@/breeding-insight/model/view_models/PaginationController';
 import {GenotypeImport} from '@/breeding-insight/model/GenotypeImport';
 import {GenoService} from '@/breeding-insight/service/GenoService';
-import {TableRow} from '@/breeding-insight/model/view_models/TableRow';
 import {PaginationQuery} from '@/breeding-insight/model/PaginationQuery';
 import {CallStack} from '@/breeding-insight/utils/CallStack';
 import {
@@ -260,20 +258,6 @@ export default class Genotyping extends ProgramsBase {
     });
   }
 
-  navigateToSampleSubmission(row: TableRow<GenotypeImport>) {
-    if (!row.data.sampleSubmissionId) {
-      return;
-    }
-
-    this.$router.push({
-      name: 'submission-details',
-      params: {
-        programId: this.activeProgram!.id!,
-        submissionId: row.data.sampleSubmissionId
-      }
-    });
-  }
-
   displayValue(value?: string): string {
     return value || '';
   }

From efd15299f61fa3475b0c1814ed6a3c7bd110abd1 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Tue, 16 Jun 2026 22:08:23 +0000
Subject: [PATCH 20/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index d4fb0cfe9..1dadfbf98 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+939",
+  "version": "v1.4.0+941",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/3c7f404c5d274987c017bd03a13ad16d9a8595c2"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/6c92b1342919d053731242f593e2aa85be12ed72"
 }

From f66e1db0576c0f94c7483262ae1299dcfb398ef9 Mon Sep 17 00:00:00 2001
From: HMS17 <hms243@cornell.edu>
Date: Tue, 23 Jun 2026 10:43:42 -0400
Subject: [PATCH 21/48] [BI-2850] - Add download options to new genotyping page

---
 src/breeding-insight/model/GenotypeImport.ts |  3 +++
 src/components/VueFeatherIconPack.vue        |  4 +++-
 src/views/genotyping/Genotyping.vue          | 16 ++++++++++++++--
 3 files changed, 20 insertions(+), 3 deletions(-)

diff --git a/src/breeding-insight/model/GenotypeImport.ts b/src/breeding-insight/model/GenotypeImport.ts
index 02e2c8e9c..76b2147c1 100644
--- a/src/breeding-insight/model/GenotypeImport.ts
+++ b/src/breeding-insight/model/GenotypeImport.ts
@@ -16,6 +16,7 @@
  */
 
 export class GenotypeImport {
+  genotypeImportId?: string;
   sampleSubmissionId?: string;
   projectNameForSampleSubmission?: string;
   sampleSubmissionCreatedBy?: string;
@@ -24,6 +25,7 @@ export class GenotypeImport {
   genotypingImportBy?: string;
 
   constructor({
+                genotypeImportId,
                 sampleSubmissionId,
                 projectNameForSampleSubmission,
                 sampleSubmissionCreatedBy,
@@ -31,6 +33,7 @@ export class GenotypeImport {
                 genotypingImportDate,
                 genotypingImportBy
               }: GenotypeImport = {}) {
+    this.genotypeImportId = genotypeImportId;
     this.sampleSubmissionId = sampleSubmissionId;
     this.projectNameForSampleSubmission = projectNameForSampleSubmission;
     this.sampleSubmissionCreatedBy = sampleSubmissionCreatedBy;
diff --git a/src/components/VueFeatherIconPack.vue b/src/components/VueFeatherIconPack.vue
index 6453c108c..c23032293 100644
--- a/src/components/VueFeatherIconPack.vue
+++ b/src/components/VueFeatherIconPack.vue
@@ -27,6 +27,7 @@ import { ArrowDownIcon,
   ChevronLeftIcon,
   ChevronRightIcon,
   ChevronUpIcon,
+  DownloadIcon,
   LogOutIcon,
   UserIcon} from "vue-feather-icons";
 
@@ -39,7 +40,8 @@ export default {
     ArrowUpIcon,
     ArrowDownIcon,
     LogOutIcon,
-    UserIcon
+    UserIcon,
+    DownloadIcon
   },
   props: {
     icon: [String, Array],
diff --git a/src/views/genotyping/Genotyping.vue b/src/views/genotyping/Genotyping.vue
index 17e21803d..061dfc875 100644
--- a/src/views/genotyping/Genotyping.vue
+++ b/src/views/genotyping/Genotyping.vue
@@ -110,6 +110,9 @@
       >
         {{ displayValue(props.row.data.genotypingImportBy) }}
       </b-table-column>
+      <b-table-column field="data.genotypeImportId" sortable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
+        <a href="javascript:void(0)" v-on:click="downloadFile(props.row.data)"><DownloadIcon></DownloadIcon> Download</a>
+      </b-table-column>
 
       <template v-slot:emptyMessage>
         <p class="has-text-weight-bold">
@@ -123,7 +126,7 @@
 <script lang="ts">
 import {Component, Watch} from 'vue-property-decorator';
 import {mapGetters} from 'vuex';
-import {PlusCircleIcon} from 'vue-feather-icons';
+import {PlusCircleIcon, DownloadIcon} from 'vue-feather-icons';
 import ProgramsBase from '@/components/program/ProgramsBase.vue';
 import ExpandableTable from '@/components/tables/expandableTable/ExpandableTable.vue';
 import {Program} from '@/breeding-insight/model/Program';
@@ -143,7 +146,8 @@ import {
 @Component({
   components: {
     ExpandableTable,
-    PlusCircleIcon
+    PlusCircleIcon,
+    DownloadIcon
   },
   computed: {
     ...mapGetters([
@@ -261,5 +265,13 @@ export default class Genotyping extends ProgramsBase {
   displayValue(value?: string): string {
     return value || '';
   }
+
+  private downloadFile(genotype: GenotypeImport) {
+    if (this.activeProgram) {
+      window.open(process.env.VUE_APP_BI_API_ROOT + '/v1/programs/' + this.activeProgram.id + '/geno/imports/' + genotype.genotypeImportId + '/download' , '_blank');
+      return true;
+    }
+    return false;
+  }
 }
 </script>

From 70e0ebb7c6c5a446b009725c6a3883635357dbb3 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Tue, 30 Jun 2026 16:09:59 +0000
Subject: [PATCH 22/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index 1dadfbf98..ccd8f4432 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+941",
+  "version": "v1.4.0+943",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/6c92b1342919d053731242f593e2aa85be12ed72"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/5f354b112e17d6a983044dfd5edb358cac3d741f"
 }

From 1494a2b958801b75680f3d09c02f3111d6789936 Mon Sep 17 00:00:00 2001
From: Keerthi Humsika Kattamudi <humsikak2000@gmail.com>
Date: Wed, 1 Jul 2026 14:07:09 -0500
Subject: [PATCH 23/48] [BI-2941] BI-2941 - Added logic to catch the "413 -
 Request entity too large" error from backend and display a custom error that
 better explains the issue related to file size.

---
 src/views/import/ImportGeno.vue | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/src/views/import/ImportGeno.vue b/src/views/import/ImportGeno.vue
index d7ec42338..2aa38bd31 100644
--- a/src/views/import/ImportGeno.vue
+++ b/src/views/import/ImportGeno.vue
@@ -151,7 +151,9 @@ export default class ImportExperiment extends ProgramsBase {
         this.$emit('show-success-notification', `Genotypic data has uploaded and is being processed.  Check the 'Jobs' page for processing status`);
       }
     } catch (e) {
-      if (e.response && e.response.statusText && e.response.status != 500) {
+      if (e.response && e.response.status == 413) {
+        this.$emit('show-error-notification', 'Uploaded file exceeds the maximum allowed file size.');
+      } else if (e.response && e.response.statusText && e.response.status != 500) {
         this.$emit('show-error-notification', e.response.statusText);
       } else {
         this.$emit('show-error-notification', 'An unknown error has occurred when uploading your import.');

From 0a55d6d73c2dd6b9bc6766ac254cc8ec3617334c Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Tue, 7 Jul 2026 20:38:16 +0000
Subject: [PATCH 24/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index ccd8f4432..bcfad9af8 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+943",
+  "version": "v1.4.0+945",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/5f354b112e17d6a983044dfd5edb358cac3d741f"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/420a63f8ae1aa76818fd9df23a1ce94f68e5be1e"
 }

From 9598588d58eab9ceb4e0ee063240899efde2aebc Mon Sep 17 00:00:00 2001
From: nickpalladino <np398@cornell.edu>
Date: Mon, 13 Jul 2026 17:24:50 -0400
Subject: [PATCH 25/48] Fix response delay and update messages

---
 src/breeding-insight/dao/GenoDAO.ts |  1 -
 src/views/import/ImportGeno.vue     | 21 +++++++++++++++++----
 2 files changed, 17 insertions(+), 5 deletions(-)

diff --git a/src/breeding-insight/dao/GenoDAO.ts b/src/breeding-insight/dao/GenoDAO.ts
index f4167ead6..6649fc5e1 100644
--- a/src/breeding-insight/dao/GenoDAO.ts
+++ b/src/breeding-insight/dao/GenoDAO.ts
@@ -26,7 +26,6 @@ export class GenoDAO {
 
     var formData = new FormData();
     formData.append("file", file);
-    formData.append("filename", file.name);
 
     const {data} = await api.call({
       url: `${process.env.VUE_APP_BI_API_V1_PATH}/programs/${programId}/submissions/${submissionId}/geno/import`,
diff --git a/src/views/import/ImportGeno.vue b/src/views/import/ImportGeno.vue
index 2aa38bd31..ff8615ab7 100644
--- a/src/views/import/ImportGeno.vue
+++ b/src/views/import/ImportGeno.vue
@@ -46,7 +46,7 @@
             v-bind:save-button-label="'Import'"
             v-bind:show-cancel-button="false"
             v-on:submit="save"
-            v-on:cancel="cancel"
+            v-on:cancel="clearForm"
             v-on:show-error-notification="$emit('show-error-notification', $event)"
         >
           <template v-slot="validations">
@@ -54,6 +54,7 @@
               <div class="column">
                 <BasicSelectField
                     v-model="upload.submissionId"
+                    v-bind:selected-id="upload.submissionId"
                     v-bind:validations="validations.submissionId"
                     v-bind:options="submissionOptions"
                     v-bind:field-name="'Sample Submission Project Name'"
@@ -146,9 +147,10 @@ export default class ImportExperiment extends ProgramsBase {
       if (response.progress!.statuscode == 500) {
         this.$emit('show-error-notification', 'An unknown error has occurred when processing your import.');
       } else if (response.progress!.statuscode !== 200) {
-        this.$emit('show-error-notification', `Error: ${response.progress!.message}`);
+        this.$emit('show-error-notification', `${response.progress!.message}`);
       } else {
-        this.$emit('show-success-notification', `Genotypic data has uploaded and is being processed.  Check the 'Jobs' page for processing status`);
+        this.$emit('show-success-notification', `Imported genotype data has been added to ${this.activeProgram!.name!}`);
+        this.clearForm();
       }
     } catch (e) {
       if (e.response && e.response.status == 413) {
@@ -159,14 +161,21 @@ export default class ImportExperiment extends ProgramsBase {
         this.$emit('show-error-notification', 'An unknown error has occurred when uploading your import.');
       }
     } finally {
+      if (this.upload.file) {
+        this.clearFile();
+      }
       this.importState.bus.$emit(DataFormEventBusHandler.SAVE_COMPLETE_EVENT);
     }
   }
 
-  cancel() {
+  clearForm() {
     this.upload = new Upload({});
   }
 
+  clearFile() {
+    this.upload.clearFile();
+  }
+
   async getSystemImportTemplateMapping() {
     let importMappings: ImportMappingConfig[];
     try {
@@ -223,6 +232,10 @@ class Upload {
     this.submissionId = submissionId;
     this.file = file;
   }
+
+  clearFile() {
+    this.file = undefined;
+  }
 }
 </script>
 

From 85219365522140b9d252a5edd1e3fbf194f95797 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Tue, 14 Jul 2026 13:32:40 +0000
Subject: [PATCH 26/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index bcfad9af8..408f14485 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+945",
+  "version": "v1.4.0+947",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/420a63f8ae1aa76818fd9df23a1ce94f68e5be1e"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/b7935840f6942781f5905e92ce57e388b94452f1"
 }

From 3e778fa27da2355d3cc2e223e148fb4f4a452c44 Mon Sep 17 00:00:00 2001
From: HMS17 <hms243@cornell.edu>
Date: Tue, 14 Jul 2026 14:31:06 -0400
Subject: [PATCH 27/48] [BI-2850] - Add download options to new genotyping page

---
 src/components/VueFeatherIconPack.vue |  4 +++-
 src/views/genotyping/Genotyping.vue   | 10 +++++-----
 2 files changed, 8 insertions(+), 6 deletions(-)

diff --git a/src/components/VueFeatherIconPack.vue b/src/components/VueFeatherIconPack.vue
index c23032293..2f6c49cd5 100644
--- a/src/components/VueFeatherIconPack.vue
+++ b/src/components/VueFeatherIconPack.vue
@@ -28,6 +28,7 @@ import { ArrowDownIcon,
   ChevronRightIcon,
   ChevronUpIcon,
   DownloadIcon,
+  UploadIcon,
   LogOutIcon,
   UserIcon} from "vue-feather-icons";
 
@@ -41,7 +42,8 @@ export default {
     ArrowDownIcon,
     LogOutIcon,
     UserIcon,
-    DownloadIcon
+    DownloadIcon,
+    UploadIcon
   },
   props: {
     icon: [String, Array],
diff --git a/src/views/genotyping/Genotyping.vue b/src/views/genotyping/Genotyping.vue
index 061dfc875..84198b3e3 100644
--- a/src/views/genotyping/Genotyping.vue
+++ b/src/views/genotyping/Genotyping.vue
@@ -26,7 +26,7 @@
       v-on:click="importGenotypingFile"
     >
       <span class="icon is-small">
-        <PlusCircleIcon
+        <UploadIcon
           size="1.5x"
           aria-hidden="true"
         />
@@ -110,7 +110,7 @@
       >
         {{ displayValue(props.row.data.genotypingImportBy) }}
       </b-table-column>
-      <b-table-column field="data.genotypeImportId" sortable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
+      <b-table-column width="150" field="data.genotypeImportId" sortable v-slot="props" :th-attrs="(column) => ({scope:'col'})">
         <a href="javascript:void(0)" v-on:click="downloadFile(props.row.data)"><DownloadIcon></DownloadIcon> Download</a>
       </b-table-column>
 
@@ -126,7 +126,7 @@
 <script lang="ts">
 import {Component, Watch} from 'vue-property-decorator';
 import {mapGetters} from 'vuex';
-import {PlusCircleIcon, DownloadIcon} from 'vue-feather-icons';
+import {UploadIcon, DownloadIcon} from 'vue-feather-icons';
 import ProgramsBase from '@/components/program/ProgramsBase.vue';
 import ExpandableTable from '@/components/tables/expandableTable/ExpandableTable.vue';
 import {Program} from '@/breeding-insight/model/Program';
@@ -146,8 +146,8 @@ import {
 @Component({
   components: {
     ExpandableTable,
-    PlusCircleIcon,
-    DownloadIcon
+    DownloadIcon,
+    UploadIcon
   },
   computed: {
     ...mapGetters([

From add45e73f12781d0c87834c51fe3f461f25ffdfa Mon Sep 17 00:00:00 2001
From: Keerthi Humsika Kattamudi <humsikak2000@gmail.com>
Date: Wed, 15 Jul 2026 22:08:51 -0500
Subject: [PATCH 28/48] [BI-2958] BI-2958: Updated Germplasm Import Template
 version.

---
 src/views/import/ImportGermplasm.vue | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/views/import/ImportGermplasm.vue b/src/views/import/ImportGermplasm.vue
index 2bc95a1f6..20f0bd945 100644
--- a/src/views/import/ImportGermplasm.vue
+++ b/src/views/import/ImportGermplasm.vue
@@ -31,7 +31,7 @@
 
       <template v-slot:importInfoTemplateMessageBox>
         <ImportInfoTemplateMessageBox v-bind:import-type-name="'Germplasm'"
-                                      v-bind:template-url="'https://www.dropbox.com/scl/fi/qavhqq8tzxr058cldqzgw/bi_germplasm_import_template_v12.xls?rlkey=igc1rfim5pjadkpdeu67uno35&st=5h45utag&dl=1'"
+                                      v-bind:template-url="'https://www.dropbox.com/scl/fi/nc3h9vzidx4f6eg5fvw8o/bi_germplasm_import_template_v13.xls?rlkey=dxe2r2ijnixy29uyf40cle6k7&st=0o70d7gz&dl=1'"
                                       class="mb-5">
           <strong>Before You Import...</strong>
           <br/>

From 61bc772c145c3bea3f4d078a86a8e145b59f74d6 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Thu, 16 Jul 2026 23:20:37 +0000
Subject: [PATCH 29/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index 408f14485..c4a2a29ae 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+947",
+  "version": "v1.4.0+949",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/b7935840f6942781f5905e92ce57e388b94452f1"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/3afd0a2e5dcab77e664ea46971e2fe49e2c3e890"
 }

From a21f86dc57d9cbe1119f4cfd5787a8602da27133 Mon Sep 17 00:00:00 2001
From: nickpalladino <np398@cornell.edu>
Date: Fri, 17 Jul 2026 10:45:39 -0400
Subject: [PATCH 30/48] Updated error message for sample submission delete

---
 src/views/sample-mgmt/SubmissionDetails.vue | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/views/sample-mgmt/SubmissionDetails.vue b/src/views/sample-mgmt/SubmissionDetails.vue
index 9202a6789..ab592ed99 100644
--- a/src/views/sample-mgmt/SubmissionDetails.vue
+++ b/src/views/sample-mgmt/SubmissionDetails.vue
@@ -764,7 +764,7 @@ export default class SubmissionDetails extends ProgramsBase {
           const response = result.value.response;
 
           if (response && response.status === 405) {
-            this.$emit('show-error-notification', `Cannot delete a submission with submitted or completed status`);
+            this.$emit('show-error-notification', response.data);
             return;
           }
           this.$emit('show-error-notification', `Unknown error deleting submission`);

From f7548cecfd54702e1503290f69122be9f8b85e13 Mon Sep 17 00:00:00 2001
From: Keerthi Humsika Kattamudi <humsikak2000@gmail.com>
Date: Fri, 17 Jul 2026 10:17:16 -0500
Subject: [PATCH 31/48] [BI-2959] BI-2959: Updated frontend External UID lookup
 logic to display the value and added unit tests for canonical External UID
 display.

---
 .../model/import/germplasm/ExternalUID.ts     | 11 ++--
 src/breeding-insight/utils/GermplasmUtils.ts  |  4 +-
 src/views/import/ImportGermplasm.vue          |  2 +-
 tests/unit/models/externalUID.spec.ts         | 51 ++++++++++++++++
 tests/unit/models/germplasmUtils.spec.ts      | 61 +++++++++++++++++++
 5 files changed, 120 insertions(+), 9 deletions(-)
 create mode 100644 tests/unit/models/externalUID.spec.ts
 create mode 100644 tests/unit/models/germplasmUtils.spec.ts

diff --git a/src/breeding-insight/model/import/germplasm/ExternalUID.ts b/src/breeding-insight/model/import/germplasm/ExternalUID.ts
index 4ca4d54fa..74b53c61b 100644
--- a/src/breeding-insight/model/import/germplasm/ExternalUID.ts
+++ b/src/breeding-insight/model/import/germplasm/ExternalUID.ts
@@ -18,17 +18,16 @@
 export class ExternalUID {
 
   /**
-   * Get ExternalUID value from germplasm BrAPI external references array based
-   * on the seedSource value
+   * Get ExternalUID value from germplasm BrAPI external references array using
+   * the canonical External UID reference source.
    *
    * @param externalReferences
-   * @param source
    */
-  public static getExternalUIDFromExternalReferences(externalReferences: Array<any>, source : string) : string | undefined {
-    if (externalReferences === undefined || source === undefined) {
+  public static getExternalUIDFromExternalReferences(externalReferences: Array<any>) : string | undefined {
+    if (externalReferences === undefined) {
       return undefined;
     }
-    const externalUID = externalReferences.find( ({ referenceSource }) => referenceSource === source );
+    const externalUID = externalReferences.find( ({ referenceSource }) => referenceSource === "External UID" );
     if (externalUID !== undefined) {
       return externalUID.referenceID;
     } else
diff --git a/src/breeding-insight/utils/GermplasmUtils.ts b/src/breeding-insight/utils/GermplasmUtils.ts
index 15ffa51c7..2c66c6b99 100644
--- a/src/breeding-insight/utils/GermplasmUtils.ts
+++ b/src/breeding-insight/utils/GermplasmUtils.ts
@@ -26,8 +26,8 @@ export const MOMENT_DATE_PERSISTED_FORMAT = 'DD/MM/YYYY h:mm:ss';
 export class GermplasmUtils {
     static getExternalUID(germplasm: Germplasm): string | undefined {
         let val;
-        if (germplasm.externalReferences && germplasm.seedSource) {
-            val = germplasm.externalReferences!.filter(ref => ref.referenceSource == germplasm.seedSource!)
+        if (germplasm.externalReferences) {
+            val = germplasm.externalReferences!.filter(ref => ref.referenceSource == "External UID")
                 .map(ref => ref.referenceID);
             return val ? val[0]: "";
         }
diff --git a/src/views/import/ImportGermplasm.vue b/src/views/import/ImportGermplasm.vue
index 2bc95a1f6..12e315732 100644
--- a/src/views/import/ImportGermplasm.vue
+++ b/src/views/import/ImportGermplasm.vue
@@ -136,7 +136,7 @@
             {{ props.row.data.brAPIObject.additionalInfo.maleParentEntryNo }}
           </b-table-column>
           <b-table-column field="externalUID" label="External UID" v-slot="props" :th-attrs="(column) => ({scope:'col'})">
-            {{ ExternalUID.getExternalUIDFromExternalReferences(props.row.data.brAPIObject.externalReferences, props.row.data.brAPIObject.seedSource) }}
+            {{ ExternalUID.getExternalUIDFromExternalReferences(props.row.data.brAPIObject.externalReferences) }}
           </b-table-column>
           <b-table-column field="synonyms" label="Synonyms" v-slot="props" :th-attrs="(column) => ({scope:'col'})">
             {{ GermplasmUtils.formatSynonyms(props.row.data.brAPIObject.synonyms) }}
diff --git a/tests/unit/models/externalUID.spec.ts b/tests/unit/models/externalUID.spec.ts
new file mode 100644
index 000000000..88281a995
--- /dev/null
+++ b/tests/unit/models/externalUID.spec.ts
@@ -0,0 +1,51 @@
+/*
+ * See the NOTICE file distributed with this work for additional information
+ * regarding copyright ownership.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+import { ExternalUID } from "@/breeding-insight/model/import/germplasm/ExternalUID";
+
+describe('ExternalUID helper returns the correct values.', () => {
+
+    it('Returns External UID when canonical External UID reference exists', () => {
+        const externalReferences = [
+            { referenceSource: "USDA", referenceID: "OLD-123" },
+            { referenceSource: "External UID", referenceID: "ABC-123" }
+        ];
+
+        expect(ExternalUID.getExternalUIDFromExternalReferences(externalReferences)).toBe("ABC-123");
+    });
+
+    it('Returns External UID when canonical External UID reference exists and source is blank', () => {
+        const externalReferences = [
+            { referenceSource: "External UID", referenceID: "ABC-456" }
+        ];
+
+        expect(ExternalUID.getExternalUIDFromExternalReferences(externalReferences)).toBe("ABC-456");
+    });
+
+    it('Returns undefined when canonical External UID reference does not exist', () => {
+        const externalReferences = [
+            { referenceSource: "USDA", referenceID: "OLD-123" }
+        ];
+
+        expect(ExternalUID.getExternalUIDFromExternalReferences(externalReferences)).toBeUndefined();
+    });
+
+    it('Returns undefined when external references are undefined', () => {
+        expect(ExternalUID.getExternalUIDFromExternalReferences(undefined as any)).toBeUndefined();
+    });
+
+});
\ No newline at end of file
diff --git a/tests/unit/models/germplasmUtils.spec.ts b/tests/unit/models/germplasmUtils.spec.ts
new file mode 100644
index 000000000..8d873a513
--- /dev/null
+++ b/tests/unit/models/germplasmUtils.spec.ts
@@ -0,0 +1,61 @@
+/*
+ * See the NOTICE file distributed with this work for additional information
+ * regarding copyright ownership.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+import { GermplasmUtils } from "@/breeding-insight/utils/GermplasmUtils";
+
+describe('GermplasmUtils External UID helper returns the correct values.', () => {
+
+    it('Returns External UID from canonical External UID reference source', () => {
+        const germplasm: any = {
+            seedSource: "USDA",
+            externalReferences: [
+                { referenceSource: "USDA", referenceID: "OLD-123" },
+                { referenceSource: "External UID", referenceID: "ABC-123" }
+            ]
+        };
+
+        expect(GermplasmUtils.getExternalUID(germplasm)).toBe("ABC-123");
+    });
+
+    it('Returns External UID when seed source is blank and canonical External UID reference exists', () => {
+        const germplasm: any = {
+            externalReferences: [
+                { referenceSource: "External UID", referenceID: "ABC-456" }
+            ]
+        };
+
+        expect(GermplasmUtils.getExternalUID(germplasm)).toBe("ABC-456");
+    });
+
+    it('Returns undefined when canonical External UID reference does not exist', () => {
+        const germplasm: any = {
+            seedSource: "USDA",
+            externalReferences: [
+                { referenceSource: "USDA", referenceID: "OLD-123" }
+            ]
+        };
+
+        expect(GermplasmUtils.getExternalUID(germplasm)).toBeUndefined();
+    });
+
+    it('Returns empty string when external references are missing', () => {
+        const germplasm: any = {};
+
+        expect(GermplasmUtils.getExternalUID(germplasm)).toBe("");
+    });
+
+});
\ No newline at end of file

From ea8198caa749029cc8148721617ddc7d739578a2 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Fri, 17 Jul 2026 15:29:15 +0000
Subject: [PATCH 32/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index c4a2a29ae..9fe5b8d08 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+949",
+  "version": "v1.4.0+951",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/3afd0a2e5dcab77e664ea46971e2fe49e2c3e890"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/1232b743863086df23077bce013571b57762c873"
 }

From e26912452e67b50f6fa5d8f6cae8df065a905a3a Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Mon, 20 Jul 2026 16:44:42 +0000
Subject: [PATCH 33/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index 9fe5b8d08..383cbe6f6 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+951",
+  "version": "v1.4.0+953",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/1232b743863086df23077bce013571b57762c873"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/f5857e03e25e4a491f0955a44ddd166cff2b64c6"
 }

From 3306264e85adf16e683a90095379cc5047769677 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Mon, 20 Jul 2026 23:24:17 +0000
Subject: [PATCH 34/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index 383cbe6f6..f1219f154 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+953",
+  "version": "v1.4.0+955",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/f5857e03e25e4a491f0955a44ddd166cff2b64c6"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/83179e5eaecde5bd11a0a8ae1acb625435afec31"
 }

From c54345336c7dbd8c5ea170bb89c9e27a9911bca7 Mon Sep 17 00:00:00 2001
From: Keerthi Humsika Kattamudi <humsikak2000@gmail.com>
Date: Thu, 23 Jul 2026 17:44:15 -0400
Subject: [PATCH 35/48] [BI-2967] BI-2967: Update the ImportGeno.vue file to
 handle the file size validation and updated the properties files as needed.

---
 .env.development                |  1 +
 src/views/import/ImportGeno.vue | 47 ++++++++++++++++++++++++++++++---
 vue.config.js                   |  1 +
 3 files changed, 46 insertions(+), 3 deletions(-)

diff --git a/.env.development b/.env.development
index 0f3dd2fa4..b1aa0d498 100644
--- a/.env.development
+++ b/.env.development
@@ -15,6 +15,7 @@ VUE_APP_LOG_LEVEL=${WEB_LOG_LEVEL}
 
 # The reference source
 VUE_APP_BI_REFERENCE_SOURCE=${BRAPI_REFERENCE_SOURCE}
+VUE_APP_MAX_GENOTYPE_UPLOAD_MB=${MAX_GENOTYPE_UPLOAD_MB}
 
 # feature flags
 VUE_APP_BRAPI_VENDOR_SUBMISSION_ENABLED=${BRAPI_VENDOR_SUBMISSION_ENABLED}
diff --git a/src/views/import/ImportGeno.vue b/src/views/import/ImportGeno.vue
index ff8615ab7..26480267c 100644
--- a/src/views/import/ImportGeno.vue
+++ b/src/views/import/ImportGeno.vue
@@ -68,9 +68,12 @@
                     {{upload.file.name}}
                   </div>
                 </div>
-                <FileSelector v-model="upload.file"
-                              v-bind:fileTypes="['.vcf']">
-                </FileSelector>
+                <FileSelector
+                    v-bind:key="fileSelectorKey"
+                    v-bind:value="upload.file"
+                    v-bind:fileTypes="['.vcf']"
+                    v-on:input="handleFileSelected"
+                />
               </div>
             </div>
           </template>
@@ -115,6 +118,8 @@ export default class ImportExperiment extends ProgramsBase {
   private importState: DataFormEventBusHandler = new DataFormEventBusHandler();
   private currentImport?: ImportResponse = new ImportResponse({});
   private systemImportTemplateId?: string;
+  private fileSelectorKey: number = 0;
+  private defaultMaxGenotypeUploadMb: number = 800;
 
   upload: Upload = new Upload({});
 
@@ -123,6 +128,36 @@ export default class ImportExperiment extends ProgramsBase {
     file: {required}
   }
 
+  private getMaxGenotypeUploadLimitMb(): number {
+    const configuredLimit = Number(process.env.VUE_APP_MAX_GENOTYPE_UPLOAD_MB);
+    if (!Number.isFinite(configuredLimit) || configuredLimit <= 0) {
+      return this.defaultMaxGenotypeUploadMb;
+    }
+    return configuredLimit;
+  }
+
+  private getMaxGenotypeUploadBytes(): number {
+    return this.getMaxGenotypeUploadLimitMb() * 1024 * 1024;
+  }
+
+  private showMaxGenotypeUploadError() {
+    this.$emit(
+        'show-error-notification',
+        `Uploaded file exceeds the maximum file size limit of ${this.getMaxGenotypeUploadLimitMb()} MB.`
+    );
+  }
+
+  handleFileSelected(file: File) {
+    if (file.size > this.getMaxGenotypeUploadBytes()) {
+      this.clearFile();
+      this.fileSelectorKey += 1;
+      this.showMaxGenotypeUploadError();
+      return;
+    }
+
+    this.upload.file = file;
+  }
+
   mounted() {
     this.loadSampleSubmissions();
     this.getSystemImportTemplateMapping();
@@ -142,6 +177,12 @@ export default class ImportExperiment extends ProgramsBase {
   async save() {
     try {
       this.$store.commit( DEACTIVATE_ALL_NOTIFICATIONS );
+
+      if (this.upload.file!.size > this.getMaxGenotypeUploadBytes()) {
+        this.showMaxGenotypeUploadError();
+        return;
+      }
+
       this.currentImport = await GenoService.uploadData(this.activeProgram!.id!, this.upload.submissionId!, this.upload.file!);
       const response: ImportResponse = await this.getDataUpload();
       if (response.progress!.statuscode == 500) {
diff --git a/vue.config.js b/vue.config.js
index eed14c1ff..196301ab5 100644
--- a/vue.config.js
+++ b/vue.config.js
@@ -27,6 +27,7 @@ process.env.VUE_APP_OPENID_LOGOUT_URL = process.env.VUE_APP_OPENID_LOGOUT_URL ||
 process.env.VUE_APP_BI_API_V1_PATH = process.env.VUE_APP_BI_API_ROOT + "/v1";
 process.env.VUE_APP_LOG_LEVEL = process.env.VUE_APP_LOG_LEVEL || 'error';
 process.env.VUE_APP_BI_REFERENCE_SOURCE = process.env.VUE_APP_BI_REFERENCE_SOURCE || 'breedinginsight.org';
+process.env.VUE_APP_MAX_GENOTYPE_UPLOAD_MB = process.env.VUE_APP_MAX_GENOTYPE_UPLOAD_MB || '800';
 process.env.VUE_APP_BRAPI_VENDOR_SUBMISSION_ENABLED = ('true' === process.env.VUE_APP_BRAPI_VENDOR_SUBMISSION_ENABLED);
 process.env.VUE_APP_ALTERNATE_AUTHENTICATION_ENABLED = ('true' === process.env.VUE_APP_ALTERNATE_AUTHENTICATION_ENABLED);
 

From dc278cbc6fec4e9582f81c6542dcc35083bece01 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Wed, 29 Jul 2026 18:47:14 +0000
Subject: [PATCH 36/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index f1219f154..c816935da 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+955",
+  "version": "v1.4.0+957",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/83179e5eaecde5bd11a0a8ae1acb625435afec31"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/4d756123a0ea1c3fd46056c1b2cbec9e2ce0c299"
 }

From 6fef585fae7984a82f01a89169c8b4eab55b18a0 Mon Sep 17 00:00:00 2001
From: HMS17 <hms243@cornell.edu>
Date: Thu, 30 Jul 2026 09:57:57 -0400
Subject: [PATCH 37/48] [BI-2981] - Improve message: duplicate germplasm
 detected

---
 src/views/import/ImportGermplasm.vue | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/views/import/ImportGermplasm.vue b/src/views/import/ImportGermplasm.vue
index f5aa30337..aeecdb74d 100644
--- a/src/views/import/ImportGermplasm.vue
+++ b/src/views/import/ImportGermplasm.vue
@@ -81,7 +81,7 @@
             <p>New Germplasm count: {{ statistics.Germplasm.newObjectCount }}</p>
             <p>New Pedigree Connections: {{ statistics["Pedigree Connections"].newObjectCount }}</p>
             <template v-if="duplicatesPresent(rows)">
-              <p>Duplicate names detected and are highlighted in yellow and show a <alert-triangle-icon size="1.2x" class="icon-align"/> icon.</p>
+              <p>Duplicated records detected and highlighted in yellow with a <alert-triangle-icon size="1.2x" class="icon-align"/> icon. If valid GID is specified, the existing record will be referenced in the new list. If no GID is specified, a new record with duplicated name will be created.</p>
             </template>
 
           </div>

From 1ac826a755e73d628e49f733996e130f84a2e7dd Mon Sep 17 00:00:00 2001
From: HMS17 <hms243@cornell.edu>
Date: Thu, 30 Jul 2026 16:08:08 -0400
Subject: [PATCH 38/48] [BI-1968] - Change default experimental download to
 "All Environments"

---
 src/breeding-insight/model/ExperimentExportOptions.ts | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/breeding-insight/model/ExperimentExportOptions.ts b/src/breeding-insight/model/ExperimentExportOptions.ts
index 41a9f3c2b..bd694ba3b 100644
--- a/src/breeding-insight/model/ExperimentExportOptions.ts
+++ b/src/breeding-insight/model/ExperimentExportOptions.ts
@@ -24,7 +24,7 @@ export class ExperimentExportOptions {
     public fileExtension: string = FileTypeOption.xls.id;
     public datasetId: string;
     public environments: string[] = [];
-    public allEnvironments: boolean = false;
+    public allEnvironments: boolean = true;
     public includeTimestamps: string = 'No';
 
     public timestampsTrueFalseString(): string {

From 55c85434cf529eb13e049f6540ae5ad9d4d0f0e1 Mon Sep 17 00:00:00 2001
From: Keerthi Humsika Kattamudi <humsikak2000@gmail.com>
Date: Thu, 30 Jul 2026 21:27:50 -0400
Subject: [PATCH 39/48] [BI-2980] BI-2980: Updated the dropbox sample
 submission template link.

---
 src/views/import/ImportSample.vue | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/views/import/ImportSample.vue b/src/views/import/ImportSample.vue
index fefcac86e..c841a3388 100644
--- a/src/views/import/ImportSample.vue
+++ b/src/views/import/ImportSample.vue
@@ -30,7 +30,7 @@
     >
       <template v-slot:importInfoTemplateMessageBox>
         <ImportInfoTemplateMessageBox v-bind:import-type-name="'Sample Submission'"
-                                      v-bind:template-url="'https://www.dropbox.com/scl/fi/dv7k2nfw9fiap51z55eis/bi_sample_submission_template_v01.xls?rlkey=pfhc9fotcvtlwzm0wlaft8m43&st=u9foa80i&dl=1'"
+                                      v-bind:template-url="'https://www.dropbox.com/scl/fi/tm9f5xznziaggzmfirjkv/bi_sample_submission_template_v02.xls?rlkey=rpn2wv7f6nfl3tjq54yqz8d3y&st=sk48hbiv&dl=1'"
                                       class="mb-5">
           <strong>Before You Import...</strong>
           <br/>

From 5602838de324400e43cd5f741be8b520a9670b5b Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Mon, 3 Aug 2026 15:29:47 +0000
Subject: [PATCH 40/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index c816935da..46ec52891 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+957",
+  "version": "v1.4.0+959",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/4d756123a0ea1c3fd46056c1b2cbec9e2ce0c299"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/8d88392e15366c9d73fe83830325a6667a3841f4"
 }

From 91242ac25a5818216a0dc07027d841fc617ce591 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Mon, 3 Aug 2026 22:55:18 +0000
Subject: [PATCH 41/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index 46ec52891..ca243f85b 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+959",
+  "version": "v1.4.0+961",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/8d88392e15366c9d73fe83830325a6667a3841f4"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/5a1a6416751a060238468c8959fe6885db7c84ae"
 }

From 2d41778d05a9146f6d7c4a203c76468cbbf31a07 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Mon, 3 Aug 2026 23:05:52 +0000
Subject: [PATCH 42/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index ca243f85b..1d925ddb5 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+961",
+  "version": "v1.4.0+963",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/5a1a6416751a060238468c8959fe6885db7c84ae"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/8ceefeeaa7f126c5101d0b53421977c215aa12cb"
 }

From ae2cada7b6c64f0222b1f0a86adcf9f7690e0907 Mon Sep 17 00:00:00 2001
From: HMS17 <hms243@cornell.edu>
Date: Wed, 5 Aug 2026 11:51:42 -0400
Subject: [PATCH 43/48] [BI-3018] - Erroneous message during .vcf upload

---
 src/views/import/ImportGeno.vue | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/views/import/ImportGeno.vue b/src/views/import/ImportGeno.vue
index 26480267c..cb84d499d 100644
--- a/src/views/import/ImportGeno.vue
+++ b/src/views/import/ImportGeno.vue
@@ -34,7 +34,7 @@
     </div>
     <article class="message is-warning" v-if="importState.saveStarted">
       <div class="message-body">
-        Your import is being processed. You can view its progress by going to the <router-link v-bind:to="{name: 'job-management', params:{programId: activeProgram.id}}">Jobs</router-link> page.
+        Leaving this page will interrupt file processing. Please wait until you receive a success message.
       </div>
     </article>
     <div class="card import-form">

From f3ac21e822cde513514a4a7f106dd03a6d1a761f Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Mon, 10 Aug 2026 14:40:23 +0000
Subject: [PATCH 44/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index 1d925ddb5..fdff0d37f 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+963",
+  "version": "v1.4.0+967",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/8ceefeeaa7f126c5101d0b53421977c215aa12cb"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/6847ebfa229a9bc7575f9b9b1744148682ed21f2"
 }

From a273f349a0389e05f601d7884d5a11636c9d1720 Mon Sep 17 00:00:00 2001
From: HMS17 <hms243@cornell.edu>
Date: Tue, 1 Sep 2026 10:07:59 -0400
Subject: [PATCH 45/48] [BI-3033] Deprecate Genotypic Data Visualization

---
 .../germplasm/GermplasmGenotypeView.vue          | 16 ++++++++++++----
 1 file changed, 12 insertions(+), 4 deletions(-)

diff --git a/src/components/germplasm/GermplasmGenotypeView.vue b/src/components/germplasm/GermplasmGenotypeView.vue
index 12d67a736..142e502b8 100644
--- a/src/components/germplasm/GermplasmGenotypeView.vue
+++ b/src/components/germplasm/GermplasmGenotypeView.vue
@@ -37,7 +37,8 @@
         </div>
       </div>
     </div>
-    <div class="columns metadata" v-if="!loading">
+    <!-- Genotypic Data Visualization Deprecated due to high memory usage, will revisit later -->
+    <!--<div class="columns metadata" v-if="!loading">
       <div class="column">
         <div v-for="metadata in currentMetadataColumns" :key="metadata.fieldAbbreviation">
           <span class="abbreviation has-text-weight-bold">{{ metadata.fieldAbbreviation }}:</span><span class="name">{{ metadata.fieldName }}</span>
@@ -72,7 +73,7 @@
       <b-table-column field="variantPosition"  label="Position" sortable :customSearch="(row, position) => filterVariantPosition(row, position)" :customSort="sortVariantPosition" :th-attrs="(column) => ({scope:'col'})">
         <template v-slot="props">
           {{ getVariant(props.row.data.variantDbId).start }}
-        </template>
+        </template> -->
 <!--        TODO plan for how to filter by position -->
 <!--        <template v-slot:searchable="props">-->
 <!--          <MultiSelectDropdown-->
@@ -81,7 +82,7 @@
 <!--              v-bind:multiple="true"-->
 <!--            />-->
 <!--        </template>-->
-      </b-table-column>
+<!--      </b-table-column>
       <b-table-column label="Ref" v-slot="props" :th-attrs="(column) => ({scope:'col'})">
         <span class="tag is-success">
             {{ getVariant(props.row.data.variantDbId).referenceBases }}
@@ -122,7 +123,7 @@
           No genotype has been recorded
         </p>
       </template>
-    </ExpandableTable>
+    </ExpandableTable> -->
   </div>
 </template>
 
@@ -182,6 +183,13 @@ export default class GermplasmGenotypeView extends GermplasmBase {
     }
 
     this.currentCallSetId = callsetId;
+
+    //Currently for memory usage fetching data visualization is deprecated and so calls aren't retrieved, which results in a null error.
+    //This skips functionality dependent on calls while keeping the code for future implementations o
+    if (!this.genotypeData!.calls!) {
+      this.loading = false;
+      return;
+    }
     const callsByCallset: Map<string, Array<Call>> = new Map(Object.entries(this.genotypeData!.calls!));
     const callSet = callsByCallset.get(callsetId);
 

From f37fc57290f02ac5012490151de92c8fa9d37e70 Mon Sep 17 00:00:00 2001
From: HMS17 <hms243@cornell.edu>
Date: Tue, 1 Sep 2026 13:10:30 -0400
Subject: [PATCH 46/48] [BI-3033] Callsets label accessibility fix

---
 src/components/germplasm/GermplasmGenotypeView.vue | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/components/germplasm/GermplasmGenotypeView.vue b/src/components/germplasm/GermplasmGenotypeView.vue
index 142e502b8..42324201a 100644
--- a/src/components/germplasm/GermplasmGenotypeView.vue
+++ b/src/components/germplasm/GermplasmGenotypeView.vue
@@ -27,7 +27,7 @@
       <div class="column">
         <label for="callsets">Callsets: </label>
         <div class="select">
-          <select name="callsets" v-model="currentCallSetId" v-on:change="switchCallset($event.target.value)">
+          <select id="callsets" name="callsets" v-model="currentCallSetId" v-on:change="switchCallset($event.target.value)">
             <option v-for="callset in callsetOptions"
                     v-bind:key="callset.callSetDbId"
                     :value="callset.callSetDbId">

From 9006754cbe4b44ff6c22936d47ec690a1ce6bd66 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Wed, 2 Sep 2026 13:15:09 +0000
Subject: [PATCH 47/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index fdff0d37f..5e49d53a5 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0+967",
+  "version": "v1.4.0+979",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/6847ebfa229a9bc7575f9b9b1744148682ed21f2"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/1d698976ec75a6208dadd7022c2ab8dde6c2adb1"
 }

From bb5049da54d6276d0992ac6c02efbb490bf43bd6 Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Wed, 9 Sep 2026 20:01:34 +0000
Subject: [PATCH 48/48] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index c36a030e0..1ad7c02f1 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v1.4.0",
+  "version": "v1.4.0+989",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -96,5 +96,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.7.14"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/releases/tag/v1.4.0"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/d54d28db116a99e278f5c055d8868cd8d790df29"
 }