From 6c438451e3b94f6ef73e1af59a8a0dc4e02a6a11 Mon Sep 17 00:00:00 2001 From: "marcin p. joachimiak" <4625870+realmarcin@users.noreply.github.com> Date: Sun, 20 Sep 2026 00:18:10 -0700 Subject: [PATCH 1/3] Refresh the fleet from its published sites, and say ten everywhere MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Four cards had drifted away from the Mechs they describe: TraitMech 630 → 696, CellStructureMech 360 → 421 (and 306 → 367 GO-grounded), CommunityMech 374 → 379, ProteinTraitsMech 408,978 → 429,291. Each number was read off the live site and then re-derived independently before it went in. Two of those sites lie in their own HTML, so the figure a scraper sees is not the figure a visitor sees. ProteinTraitsMech ships 408,978 records and 29 sources as static markup and overwrites both at runtime from data/facets.json, which serves 429,291 and 34. MediaIngredientMech ships ellipsis placeholders filled the same way. _fleet/README.md now says to read the rendered number. CultureMech's card no longer takes its Mech's headline tile. That tile reads 10,657 "recipes" and has never matched any data layer: when it was hand-written on 2026-06-30 the corpus was already 15,878 normalized and 6,103 merged, and nothing regenerates it. The card states 6,286 canonical media instead — what CultureMech's own pages/index.html publishes, and what the fleet census counts, so the two halves of the page now agree. The card note says why this one card is sourced differently. Six timestamped backups under data/ingredients/mapped/backups/ were being counted as MediaIngredientMech records, and their prefixes double-counted in the heatmap, so the census read 2,957 where the Mech says 2,951 (#88). A `**` glob cannot exclude a subtree, so roots.py grew an EXCLUDE_DIRS map rather than enumerating mapped/ and unmapped/ explicitly — enumerating would silently miss a new record directory, which is the failure record_paths() exists to prevent. The fleet has had ten members since TaxonMech joined, but the site still said nine, and resources.md listed eight and gave sections to five. Every enumeration now names all ten and links to /mechs/; resources.md gains sections for CellStructureMech, HabitatMech, AntibioticMech, NaturalProductMech and TaxonMech. communitymech.md still claimed 304 communities and pointed both its browser and embedding links at the landing page. Census reread on 2026-09-19; card totals rechecked against the live sites on 2026-09-20. Known gaps filed rather than fixed here: the prefix regex omits TOGO, CultureMech's second namespace at 2,833 occurrences (#84); the CommunityMech and TraitMech checkouts lag their remotes (#85); upstream site defects (#86); TaxonMech still has no census row (#87). Co-Authored-By: Claude Opus 5 (1M context) --- _fleet/README.md | 39 ++++- _fleet/data/fleet_data.json | 2 +- _fleet/data/mech_stats.json | 28 ++-- _fleet/data/prefix_census.json | 72 ++++----- _fleet/data/subsets_summary.json | 152 +++++++++--------- _fleet/fleet_fragment.html | 12 +- _fleet/mechs_template.md | 14 +- .../fleet/cells/CellStructureMech--CHEBI.json | 2 +- assets/fleet/cells/CellStructureMech--GO.json | 2 +- .../cells/CellStructureMech--InterPro.json | 2 +- .../cells/CellStructureMech--NCBITaxon.json | 2 +- assets/fleet/cells/HabitatMech--BTO.json | 2 +- assets/fleet/cells/HabitatMech--CHEBI.json | 2 +- assets/fleet/cells/HabitatMech--ENVO.json | 2 +- assets/fleet/cells/HabitatMech--GO.json | 2 +- .../fleet/cells/HabitatMech--NCBITaxon.json | 2 +- assets/fleet/cells/HabitatMech--UBERON.json | 2 +- .../fleet/cells/MediaIngredientMech--CAS.json | 2 +- .../cells/MediaIngredientMech--CHEBI.json | 2 +- .../cells/ProteinTraitsMech--NCBITaxon.json | 2 +- assets/fleet/cells/TraitMech--METPO.json | 2 +- assets/fleet/cells/TraitMech--NCBITaxon.json | 2 +- .../CellStructureMech--AntibioticMech.json | 2 +- .../edges/CellStructureMech--CultureMech.json | 2 +- ...ellStructureMech--MediaIngredientMech.json | 2 +- ...CellStructureMech--NaturalProductMech.json | 2 +- .../CellStructureMech--ProteinTraitsMech.json | 2 +- .../edges/CommunityMech--AntibioticMech.json | 2 +- .../CommunityMech--CellStructureMech.json | 2 +- .../CommunityMech--ProteinTraitsMech.json | 2 +- .../fleet/edges/CommunityMech--TraitMech.json | 2 +- .../edges/HabitatMech--AntibioticMech.json | 2 +- .../edges/HabitatMech--CellStructureMech.json | 2 +- .../edges/HabitatMech--CommunityMech.json | 2 +- .../HabitatMech--MediaIngredientMech.json | 2 +- .../HabitatMech--NaturalProductMech.json | 2 +- .../edges/HabitatMech--ProteinTraitsMech.json | 2 +- .../fleet/edges/HabitatMech--TraitMech.json | 2 +- .../NaturalProductMech--AntibioticMech.json | 2 +- .../ProteinTraitsMech--AntibioticMech.json | 2 +- .../edges/ProteinTraitsMech--CultureMech.json | 2 +- ...roteinTraitsMech--MediaIngredientMech.json | 2 +- ...ProteinTraitsMech--NaturalProductMech.json | 2 +- .../edges/TraitMech--AntibioticMech.json | 2 +- .../edges/TraitMech--CellStructureMech.json | 2 +- .../edges/TraitMech--NaturalProductMech.json | 2 +- .../edges/TraitMech--ProteinTraitsMech.json | 2 +- communitymech.md | 15 +- culturemech.md | 9 +- index.md | 2 +- mechs.md | 50 +++--- mediaingredientmech.md | 9 +- resources.md | 63 +++++++- scripts/fleet/roots.py | 13 ++ 54 files changed, 330 insertions(+), 230 deletions(-) diff --git a/_fleet/README.md b/_fleet/README.md index edac2ef..3672c4e 100644 --- a/_fleet/README.md +++ b/_fleet/README.md @@ -42,7 +42,7 @@ python3 scripts/fleet/assemble_page.py --check Membership updates do not require rescanning the record corpora. The current September 2026 vocabulary census covers nine Mechs; TaxonMech is shown in the -graph and cards with its published 625,960-taxon total (checked September 15, 2026), but its vocabulary counts have not +graph and cards with its published 625,960-taxon total (checked September 20, 2026), but its vocabulary counts have not been measured by this pipeline. The heatmap uses the measured `fleet_data.json` order, and the page states this limitation. Add TaxonMech to the census roots and scanners before publishing measured vocabulary cells or overlap counts for it. @@ -80,13 +80,36 @@ NaturalProductMech and TaxonMech both publish browse sites linked from their cards; these links are separate from the historical census's record-link routes. MIBiG and NPAtlas are carried through the whole pipeline alongside the -ontologies, because they are how NaturalProductMech grounds its corpus. +ontologies, because they are how NaturalProductMech cites its corpus. MIBiG is a +seeded grounding source; NPAtlas is a cross-reference target only, since its +licence bars ingestion into a CC BY 4.0 corpus. -## Published-site refresh (September 15, 2026) +`prefix_census.py`'s prefix alternation is a hand-maintained list and is known to +be incomplete: TOGO, UTEX and CCAP are absent although comparable registries +(MediaDive, DSMZ, ATCC, GOLD) are present. TOGO is CultureMech's second-largest +structured namespace at 2,833 occurrences, so the heatmap currently understates +it. Adding a prefix changes the heatmap's columns, so it needs a full rescan. + +## Published-site refresh (September 20, 2026) Cards and graph details use the live sites linked by each card, following their -landing-page redirects. MediaIngredientMech counts come from its published -`data/ingredients.json` (2,951 ingredients, 2,616 MAPPED), as on its landing page. -CultureMech reports 10,657 published-browser recipes, not the older merged-corpus -count. The vocabulary census and overlap assets remain their earlier snapshot; -the page explicitly separates these from the refreshed site totals. +landing-page redirects. Those redirects are client-side meta refreshes, not HTTP +3xx, so `curl -L` stops at the 200-response shell and never reaches the real +browser: fetch the `pages/` (or `app/`) URL directly when checking a card. + +Read the number the page *renders*, not the one in its HTML source. Two landing +pages ship a stale static figure that JavaScript overwrites at runtime from the +Mech's own index: ProteinTraitsMech's source says 408,978 records and 29 sources +while `data/facets.json` serves 429,291 and 34, and MediaIngredientMech's source +carries literal ellipsis placeholders filled from `data/ingredients.json` +(2,951 ingredients, 2,616 MAPPED). + +CultureMech is the one card that does not take its Mech's headline tile. That +tile reads 10,657 "recipes" and has never matched any data layer: when it was +written on 2026-06-30 the corpus was already 15,878 normalized and 6,103 merged, +and nothing regenerates it. The card states 6,286 canonical media instead, which +is what CultureMech's own `pages/index.html` publishes and what the fleet census +counts; the merged/normalized split is explained in the card's detail text. + +The vocabulary census and overlap assets are a separate, dated snapshot; the page +explicitly separates these from the site totals. diff --git a/_fleet/data/fleet_data.json b/_fleet/data/fleet_data.json index ccac820..127ccfa 100644 --- a/_fleet/data/fleet_data.json +++ b/_fleet/data/fleet_data.json @@ -1 +1 @@ -{"order":["HabitatMech","CommunityMech","TraitMech","CellStructureMech","ProteinTraitsMech","NaturalProductMech","AntibioticMech","MediaIngredientMech","CultureMech"],"voc":["NCBITaxon","CHEBI","GO","UniProt","ENVO","UBERON","InterPro","PDB","CAS","METPO","KEGG","FOODON","PATO","Pfam","RHEA","ARO","BTO","MIBiG","NPAtlas","GTDB","PMID","DOI"],"heat":{"HabitatMech":{"CHEBI":22,"NCBITaxon":13226,"GO":2,"ENVO":3319,"METPO":0,"ARO":0,"UniProt":0,"InterPro":0,"Pfam":0,"RHEA":0,"PDB":0,"PATO":4,"UBERON":1115,"FOODON":200,"BTO":1363,"GTDB":0,"KEGG":0,"CAS":0,"MIBiG":0,"NPAtlas":0,"PMID":513,"DOI":112},"CommunityMech":{"CHEBI":2746,"NCBITaxon":3641,"GO":1430,"ENVO":416,"METPO":0,"ARO":0,"UniProt":0,"InterPro":0,"Pfam":0,"RHEA":0,"PDB":0,"PATO":0,"UBERON":10,"FOODON":0,"BTO":0,"GTDB":1788,"KEGG":0,"CAS":0,"MIBiG":0,"NPAtlas":0,"PMID":5876,"DOI":1078},"TraitMech":{"CHEBI":673,"NCBITaxon":955,"GO":886,"ENVO":22,"METPO":3453,"ARO":0,"UniProt":399,"InterPro":115,"Pfam":0,"RHEA":0,"PDB":0,"PATO":99,"UBERON":0,"FOODON":0,"BTO":0,"GTDB":0,"KEGG":0,"CAS":0,"MIBiG":0,"NPAtlas":0,"PMID":412,"DOI":6088},"CellStructureMech":{"CHEBI":45,"NCBITaxon":1040,"GO":5994,"ENVO":0,"METPO":14,"ARO":0,"UniProt":284,"InterPro":56,"Pfam":22,"RHEA":0,"PDB":67,"PATO":0,"UBERON":0,"FOODON":0,"BTO":0,"GTDB":0,"KEGG":0,"CAS":0,"MIBiG":0,"NPAtlas":0,"PMID":274,"DOI":4800},"ProteinTraitsMech":{"CHEBI":374424,"NCBITaxon":358314,"GO":421586,"ENVO":0,"METPO":244,"ARO":397717,"UniProt":657598,"InterPro":1478104,"Pfam":521966,"RHEA":613456,"PDB":235957,"PATO":120,"UBERON":43,"FOODON":0,"BTO":0,"GTDB":0,"KEGG":245,"CAS":0,"MIBiG":0,"NPAtlas":0,"PMID":657527,"DOI":193845},"NaturalProductMech":{"CHEBI":1659,"NCBITaxon":13960,"GO":0,"ENVO":0,"METPO":0,"ARO":0,"UniProt":613,"InterPro":0,"Pfam":0,"RHEA":14,"PDB":0,"PATO":0,"UBERON":0,"FOODON":0,"BTO":0,"GTDB":0,"KEGG":0,"CAS":0,"MIBiG":10133,"NPAtlas":1756,"PMID":5703,"DOI":8437},"AntibioticMech":{"CHEBI":22104,"NCBITaxon":956,"GO":3,"ENVO":0,"METPO":0,"ARO":16653,"UniProt":278,"InterPro":0,"Pfam":0,"RHEA":0,"PDB":6,"PATO":0,"UBERON":0,"FOODON":0,"BTO":0,"GTDB":0,"KEGG":0,"CAS":1823,"MIBiG":0,"NPAtlas":0,"PMID":1207,"DOI":216},"MediaIngredientMech":{"CHEBI":7914,"NCBITaxon":1,"GO":0,"ENVO":110,"METPO":0,"ARO":0,"UniProt":0,"InterPro":0,"Pfam":0,"RHEA":0,"PDB":0,"PATO":0,"UBERON":23,"FOODON":271,"BTO":3,"GTDB":0,"KEGG":61,"CAS":692,"MIBiG":0,"NPAtlas":0,"PMID":29,"DOI":5},"CultureMech":{"CHEBI":160649,"NCBITaxon":63,"GO":0,"ENVO":13,"METPO":0,"ARO":0,"UniProt":0,"InterPro":0,"Pfam":0,"RHEA":0,"PDB":0,"PATO":0,"UBERON":138,"FOODON":214,"BTO":0,"GTDB":0,"KEGG":1406,"CAS":1,"MIBiG":0,"NPAtlas":0,"PMID":68,"DOI":76}},"cells":{"HabitatMech--ENVO":1285,"HabitatMech--NCBITaxon":896,"HabitatMech--CHEBI":10,"HabitatMech--UBERON":701,"HabitatMech--PATO":3,"HabitatMech--FOODON":85,"HabitatMech--BTO":586,"HabitatMech--GO":1,"CommunityMech--CHEBI":320,"CommunityMech--ENVO":350,"CommunityMech--GO":351,"CommunityMech--NCBITaxon":364,"CommunityMech--GTDB":338,"CommunityMech--UBERON":10,"TraitMech--METPO":605,"TraitMech--GO":292,"TraitMech--NCBITaxon":443,"TraitMech--CHEBI":183,"TraitMech--UniProt":182,"TraitMech--InterPro":61,"TraitMech--ENVO":14,"TraitMech--PATO":49,"CellStructureMech--GO":331,"CellStructureMech--NCBITaxon":338,"CellStructureMech--UniProt":52,"CellStructureMech--METPO":5,"CellStructureMech--InterPro":20,"CellStructureMech--PDB":6,"CellStructureMech--Pfam":8,"CellStructureMech--CHEBI":20,"ProteinTraitsMech--GO":110744,"ProteinTraitsMech--CHEBI":30122,"ProteinTraitsMech--METPO":119,"ProteinTraitsMech--RHEA":29550,"ProteinTraitsMech--UniProt":159595,"ProteinTraitsMech--KEGG":231,"ProteinTraitsMech--NCBITaxon":98697,"ProteinTraitsMech--Pfam":107455,"ProteinTraitsMech--InterPro":120090,"ProteinTraitsMech--UBERON":43,"ProteinTraitsMech--PATO":79,"ProteinTraitsMech--ARO":7452,"ProteinTraitsMech--PDB":51718,"NaturalProductMech--MIBiG":3115,"NaturalProductMech--NCBITaxon":3115,"NaturalProductMech--NPAtlas":1740,"NaturalProductMech--CHEBI":405,"NaturalProductMech--UniProt":102,"NaturalProductMech--RHEA":1,"AntibioticMech--CHEBI":2814,"AntibioticMech--CAS":1797,"AntibioticMech--ARO":568,"AntibioticMech--NCBITaxon":163,"AntibioticMech--UniProt":47,"AntibioticMech--PDB":5,"AntibioticMech--GO":3,"MediaIngredientMech--CHEBI":2231,"MediaIngredientMech--CAS":279,"MediaIngredientMech--KEGG":58,"MediaIngredientMech--FOODON":100,"MediaIngredientMech--ENVO":26,"MediaIngredientMech--UBERON":10,"MediaIngredientMech--BTO":1,"MediaIngredientMech--NCBITaxon":1,"CultureMech--CHEBI":6123,"CultureMech--FOODON":200,"CultureMech--UBERON":72,"CultureMech--NCBITaxon":30,"CultureMech--ENVO":12,"CultureMech--KEGG":329,"CultureMech--CAS":1},"vocab_edges":[{"a":"HabitatMech","b":"CommunityMech","n":276,"by":{"NCBITaxon":229,"ENVO":41,"UBERON":4,"CHEBI":2},"ex":[{"id":"NCBITaxon:2","label":"Bacteria"},{"id":"ENVO:00001998","label":"soil"},{"id":"NCBITaxon:1386","label":"Bacillus 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"as_of": "2026-09-16", - "merged_prs_total": 2778, + "as_of": "2026-09-20", + "merged_prs_total": 2994, "mechs": [ { "mech": "CultureMech", @@ -13,10 +13,10 @@ { "mech": "MediaIngredientMech", "repo": "MediaIngredientMech", - "records": 2957, + "records": 2951, "reviewed": null, "status_field": null, - "merged_prs": 359 + "merged_prs": 361 }, { "mech": "CommunityMech", @@ -24,15 +24,15 @@ "records": 364, "reviewed": null, "status_field": null, - "merged_prs": 528 + "merged_prs": 534 }, { "mech": "TraitMech", "repo": "TraitMech", - "records": 618, + "records": 694, "reviewed": 427, "status_field": "mapping_status", - "merged_prs": 517 + "merged_prs": 585 }, { "mech": "ProteinTraitsMech", @@ -40,7 +40,7 @@ "records": 429291, "reviewed": 39591, "status_field": "mapping_status", - "merged_prs": 314 + "merged_prs": 316 }, { "mech": "AntibioticMech", @@ -48,23 +48,23 @@ "records": 2939, "reviewed": 80, "status_field": "curation_status", - "merged_prs": 160 + "merged_prs": 243 }, { "mech": "CellStructureMech", "repo": "CellStructureMech", - "records": 338, + "records": 421, "reviewed": 0, "status_field": "mapping_status", - "merged_prs": 425 + "merged_prs": 465 }, { "mech": "HabitatMech", "repo": "HabitatMech", "records": 3206, - "reviewed": 684, + "reviewed": 686, "status_field": "mapping_status", - "merged_prs": 130 + "merged_prs": 144 }, { "mech": "NaturalProductMech", @@ -80,7 +80,7 @@ "records": 625960, "reviewed": 0, "status_field": "mapping_status", - "merged_prs": 15 + "merged_prs": 16 } ] } \ No newline at end of file diff --git a/_fleet/data/prefix_census.json b/_fleet/data/prefix_census.json index 42a9cde..1738dfe 100644 --- a/_fleet/data/prefix_census.json +++ b/_fleet/data/prefix_census.json @@ -2,21 +2,21 @@ "HabitatMech": { "files": 3206, "prefixes": { - "NCBITaxon": 13226, - "ENVO": 3319, + "NCBITaxon": 13227, + "ENVO": 3368, "GOLD": 2562, - "BTO": 1363, - "UBERON": 1115, - "PMID": 513, - "FOODON": 200, + "BTO": 1367, + "UBERON": 1123, + "PMID": 516, + "FOODON": 198, "BacDive": 167, "PO": 117, - "DOI": 112, + "DOI": 116, "MESH": 83, - "NCIT": 37, - "CHEBI": 22, - "PATO": 4, - "GO": 2 + "NCIT": 38, + "CHEBI": 24, + "GO": 7, + "PATO": 4 } }, "CommunityMech": { @@ -35,12 +35,12 @@ } }, "TraitMech": { - "files": 618, + "files": 694, "prefixes": { - "DOI": 6088, - "METPO": 3453, - "RO": 2416, - "NCBITaxon": 955, + "DOI": 6749, + "METPO": 3541, + "RO": 2559, + "NCBITaxon": 975, "GO": 886, "CHEBI": 673, "PMID": 412, @@ -54,23 +54,23 @@ } }, "CellStructureMech": { - "files": 338, + "files": 421, "prefixes": { - "GO": 5994, - "DOI": 4800, - "NCBITaxon": 1040, + "GO": 8623, + "DOI": 5931, + "NCBITaxon": 1211, + "PMID": 308, "UniProt": 284, - "PMID": 274, "ECO": 145, "PDB": 67, - "InterPro": 56, - "CHEBI": 45, + "InterPro": 58, + "CHEBI": 48, "Pfam": 22, + "ComplexPortal": 16, "METPO": 14, "RO": 7, - "ComplexPortal": 5, + "SO": 5, "MICRO": 4, - "SO": 4, "EMDB": 3, "BFO": 1 } @@ -78,20 +78,20 @@ "ProteinTraitsMech": { "files": 429291, "prefixes": { - "InterPro": 1478104, - "UniProt": 657598, + "InterPro": 1558488, + "UniProt": 770276, "PMID": 657527, "RHEA": 613456, - "Pfam": 521966, + "Pfam": 558504, "GO": 421586, "ARO": 397717, "CHEBI": 374424, - "NCBITaxon": 358314, + "NCBITaxon": 371580, "RO": 278407, "PDB": 235957, "DOI": 193845, - "NCBIfam": 139525, - "EC": 119999, + "NCBIfam": 141317, + "EC": 120016, "BFO": 74488, "ComplexPortal": 20753, "SO": 19302, @@ -126,7 +126,7 @@ "ARO": 16653, "CAS": 1823, "PMID": 1207, - "NCBITaxon": 956, + "NCBITaxon": 1057, "PubChem": 592, "DrugBank": 508, "UniProt": 278, @@ -137,10 +137,10 @@ } }, "MediaIngredientMech": { - "files": 2957, + "files": 2951, "prefixes": { - "CHEBI": 7914, - "CAS": 692, + "CHEBI": 7895, + "CAS": 689, "MICRO": 345, "MESH": 301, "NCIT": 287, @@ -174,5 +174,5 @@ "CAS": 1 } }, - "_as_of": "2026-09-15" + "_as_of": "2026-09-20" } \ No newline at end of file diff --git a/_fleet/data/subsets_summary.json b/_fleet/data/subsets_summary.json index fcee47c..014326e 100644 --- a/_fleet/data/subsets_summary.json +++ b/_fleet/data/subsets_summary.json @@ -42,15 +42,15 @@ "label": "Staphylococcus aureus" }, { - "id": "NCBITaxon:1423", - "label": "Bacillus subtilis" + "id": "NCBITaxon:287", + "label": "Pseudomonas aeruginosa" } ] }, "HabitatMech|CellStructureMech": { - "n": 38, + "n": 39, "by": { - "NCBITaxon": 38 + "NCBITaxon": 39 }, "ex": [ { @@ -68,12 +68,12 @@ ] }, "HabitatMech|ProteinTraitsMech": { - "n": 1249, + "n": 1285, "by": { - "NCBITaxon": 1234, + "NCBITaxon": 1269, "UBERON": 12, "CHEBI": 2, - "GO": 1 + "GO": 2 }, "ex": [ { @@ -85,8 +85,8 @@ "label": "Escherichia coli" }, { - "id": "NCBITaxon:1869227", - "label": "bacterium" + "id": "NCBITaxon:1396", + "label": "Bacillus cereus" } ] }, @@ -111,9 +111,9 @@ ] }, "HabitatMech|AntibioticMech": { - "n": 31, + "n": 32, "by": { - "NCBITaxon": 31 + "NCBITaxon": 32 }, "ex": [ { @@ -131,11 +131,11 @@ ] }, "HabitatMech|MediaIngredientMech": { - "n": 21, + "n": 22, "by": { "ENVO": 15, "UBERON": 4, - "CHEBI": 2 + "CHEBI": 3 }, "ex": [ { @@ -198,9 +198,9 @@ ] }, "CommunityMech|CellStructureMech": { - "n": 54, + "n": 55, "by": { - "NCBITaxon": 31, + "NCBITaxon": 32, "CHEBI": 13, "GO": 10 }, @@ -220,10 +220,10 @@ ] }, "CommunityMech|ProteinTraitsMech": { - "n": 648, + "n": 650, "by": { "CHEBI": 268, - "NCBITaxon": 190, + "NCBITaxon": 192, "GO": 189, "UBERON": 1 }, @@ -264,10 +264,10 @@ ] }, "CommunityMech|AntibioticMech": { - "n": 57, + "n": 58, "by": { "CHEBI": 39, - "NCBITaxon": 18 + "NCBITaxon": 19 }, "ex": [ { @@ -329,9 +329,9 @@ ] }, "TraitMech|CellStructureMech": { - "n": 122, + "n": 123, "by": { - "GO": 43, + "GO": 44, "NCBITaxon": 37, "DOI": 21, "CHEBI": 7, @@ -344,24 +344,24 @@ "id": "NCBITaxon:562", "label": "Escherichia coli" }, - { - "id": "GO:0009767", - "label": "photosynthetic electron transport chain" - }, { "id": "NCBITaxon:83333", "label": "Escherichia coli (strain K12)" + }, + { + "id": "GO:0009767", + "label": "photosynthetic electron transport chain" } ] }, "TraitMech|ProteinTraitsMech": { - "n": 792, + "n": 807, "by": { "GO": 248, - "NCBITaxon": 135, + "NCBITaxon": 136, "METPO": 111, "CHEBI": 109, - "DOI": 86, + "DOI": 100, "UniProt": 56, "InterPro": 47 }, @@ -403,9 +403,9 @@ ] }, "TraitMech|AntibioticMech": { - "n": 30, + "n": 31, "by": { - "NCBITaxon": 20, + "NCBITaxon": 21, "CHEBI": 10 }, "ex": [ @@ -465,17 +465,21 @@ ] }, "CellStructureMech|ProteinTraitsMech": { - "n": 834, + "n": 989, "by": { - "GO": 463, + "GO": 576, + "DOI": 145, "UniProt": 143, - "DOI": 106, - "NCBITaxon": 70, + "NCBITaxon": 72, "InterPro": 29, - "CHEBI": 13, + "CHEBI": 14, "Pfam": 10 }, "ex": [ + { + "id": "GO:0032991", + "label": "protein-containing complex" + }, { "id": "NCBITaxon:3055", "label": "Chlamydomonas reinhardtii" @@ -483,17 +487,13 @@ { "id": "GO:0016020", "label": "membrane" - }, - { - "id": "GO:0043231", - "label": "intracellular membrane-bounded organelle" } ] }, "CellStructureMech|NaturalProductMech": { - "n": 19, + "n": 20, "by": { - "NCBITaxon": 19 + "NCBITaxon": 20 }, "ex": [ { @@ -505,16 +505,16 @@ "label": "Bacillus subtilis" }, { - "id": "NCBITaxon:83333", - "label": "Escherichia coli (strain K12)" + "id": "NCBITaxon:287", + "label": "Pseudomonas aeruginosa" } ] }, "CellStructureMech|AntibioticMech": { - "n": 15, + "n": 17, "by": { - "NCBITaxon": 11, - "CHEBI": 4 + "NCBITaxon": 12, + "CHEBI": 5 }, "ex": [ { @@ -526,15 +526,15 @@ "label": "Saccharomyces cerevisiae" }, { - "id": "NCBITaxon:1423", - "label": "Bacillus subtilis" + "id": "NCBITaxon:90371", + "label": "Salmonella enterica subsp. enterica serovar Typhimurium" } ] }, "CellStructureMech|MediaIngredientMech": { - "n": 12, + "n": 13, "by": { - "CHEBI": 12 + "CHEBI": 13 }, "ex": [ { @@ -573,9 +573,9 @@ ] }, "ProteinTraitsMech|NaturalProductMech": { - "n": 890, + "n": 900, "by": { - "NCBITaxon": 487, + "NCBITaxon": 497, "UniProt": 156, "CHEBI": 148, "DOI": 96, @@ -597,11 +597,11 @@ ] }, "ProteinTraitsMech|AntibioticMech": { - "n": 2436, + "n": 2437, "by": { "ARO": 1740, "CHEBI": 594, - "NCBITaxon": 78, + "NCBITaxon": 79, "UniProt": 20, "GO": 2, "DOI": 2 @@ -795,51 +795,51 @@ } }, "cells": { - "HabitatMech|ENVO": 1285, "HabitatMech|NCBITaxon": 896, - "HabitatMech|CHEBI": 10, - "HabitatMech|UBERON": 701, + "HabitatMech|ENVO": 1296, + "HabitatMech|CHEBI": 11, + "HabitatMech|UBERON": 704, "HabitatMech|PATO": 3, "HabitatMech|FOODON": 85, - "HabitatMech|BTO": 586, - "HabitatMech|GO": 1, - "CommunityMech|CHEBI": 320, - "CommunityMech|ENVO": 350, + "HabitatMech|BTO": 587, + "HabitatMech|GO": 2, "CommunityMech|GO": 351, "CommunityMech|NCBITaxon": 364, + "CommunityMech|ENVO": 350, + "CommunityMech|CHEBI": 320, "CommunityMech|GTDB": 338, "CommunityMech|UBERON": 10, - "TraitMech|METPO": 605, "TraitMech|GO": 292, - "TraitMech|NCBITaxon": 443, - "TraitMech|CHEBI": 183, + "TraitMech|NCBITaxon": 463, + "TraitMech|METPO": 681, "TraitMech|UniProt": 182, + "TraitMech|CHEBI": 183, "TraitMech|InterPro": 61, "TraitMech|ENVO": 14, "TraitMech|PATO": 49, - "CellStructureMech|GO": 331, - "CellStructureMech|NCBITaxon": 338, + "CellStructureMech|GO": 414, + "CellStructureMech|NCBITaxon": 417, "CellStructureMech|UniProt": 52, "CellStructureMech|METPO": 5, - "CellStructureMech|InterPro": 20, + "CellStructureMech|InterPro": 21, "CellStructureMech|PDB": 6, "CellStructureMech|Pfam": 8, - "CellStructureMech|CHEBI": 20, + "CellStructureMech|CHEBI": 21, "ProteinTraitsMech|GO": 110744, "ProteinTraitsMech|CHEBI": 30122, "ProteinTraitsMech|METPO": 119, - "ProteinTraitsMech|RHEA": 29550, "ProteinTraitsMech|UniProt": 159595, + "ProteinTraitsMech|RHEA": 29550, "ProteinTraitsMech|KEGG": 231, - "ProteinTraitsMech|NCBITaxon": 98697, - "ProteinTraitsMech|Pfam": 107455, + "ProteinTraitsMech|NCBITaxon": 111963, "ProteinTraitsMech|InterPro": 120090, + "ProteinTraitsMech|Pfam": 107455, "ProteinTraitsMech|UBERON": 43, "ProteinTraitsMech|PATO": 79, "ProteinTraitsMech|ARO": 7452, "ProteinTraitsMech|PDB": 51718, - "NaturalProductMech|MIBiG": 3115, "NaturalProductMech|NCBITaxon": 3115, + "NaturalProductMech|MIBiG": 3115, "NaturalProductMech|NPAtlas": 1740, "NaturalProductMech|CHEBI": 405, "NaturalProductMech|UniProt": 102, @@ -847,20 +847,20 @@ "AntibioticMech|CHEBI": 2814, "AntibioticMech|CAS": 1797, "AntibioticMech|ARO": 568, - "AntibioticMech|NCBITaxon": 163, "AntibioticMech|UniProt": 47, + "AntibioticMech|NCBITaxon": 163, "AntibioticMech|PDB": 5, "AntibioticMech|GO": 3, - "MediaIngredientMech|CHEBI": 2231, - "MediaIngredientMech|CAS": 279, + "MediaIngredientMech|CHEBI": 2226, + "MediaIngredientMech|CAS": 278, "MediaIngredientMech|KEGG": 58, "MediaIngredientMech|FOODON": 100, "MediaIngredientMech|ENVO": 26, "MediaIngredientMech|UBERON": 10, "MediaIngredientMech|BTO": 1, "MediaIngredientMech|NCBITaxon": 1, - "CultureMech|CHEBI": 6123, "CultureMech|FOODON": 200, + "CultureMech|CHEBI": 6123, "CultureMech|UBERON": 72, "CultureMech|NCBITaxon": 30, "CultureMech|ENVO": 12, diff --git a/_fleet/fleet_fragment.html b/_fleet/fleet_fragment.html index 7adce45..ccb469c 100644 --- a/_fleet/fleet_fragment.html +++ b/_fleet/fleet_fragment.html @@ -442,16 +442,16 @@

Shared vocabulary

var MANIFEST = /*FLEET_MANIFEST*/{}/*END_MANIFEST*/; var MECHS = { - HabitatMech: { key: "habitatmech", scale: "Habitat", tag: "Four habitat vocabularies harmonized into ENVO-grounded records that keep every source's attestation.", records: 3206, unit: "habitat records", root: "HabitatRecord", vocab: ["ENVO", "NCBITaxon", "BTO", "UBERON", "FOODON"], github: "https://github.com/CultureBotAI/HabitatMech", site: "https://culturebotai.github.io/HabitatMech/", page: "", license: "CC0-1.0", sources: "JGI GOLD ecosystem paths, BacDive isolation sources, PREGO, Madin et al.; ENVO/UBERON/FOODON/BTO via kg-microbe", extra: "684 curator-reviewed; 2,150 ontology-grounded; 176 corroborated by two or more sources. Browse habitat records or explore the semantic text map." }, - CommunityMech: { key: "communitymech", scale: "Community", tag: "Curated knowledge base of microbial communities, their interactions, cultivation and evidence.", records: 374, unit: "community records", root: "MicrobialCommunity", vocab: ["NCBITaxon", "CHEBI", "GO", "ENVO", "GTDB"], github: "https://github.com/CultureBotAI/CommunityMech", site: "https://culturebotai.github.io/CommunityMech/", page: "/communitymech/", license: "BSD-3-Clause", sources: "PubMed literature, GTDB, IMG, BioModels, CultureMech media, MediaIngredientMech ingredients", extra: "374 communities across 16 categories, with faceted record browsing, a PaCMAP embedding browser and a graph layout." }, + HabitatMech: { key: "habitatmech", scale: "Habitat", tag: "Four habitat vocabularies harmonized into ENVO-grounded records that keep every source's attestation.", records: 3206, unit: "habitat records", root: "HabitatRecord", vocab: ["ENVO", "NCBITaxon", "BTO", "UBERON", "FOODON"], github: "https://github.com/CultureBotAI/HabitatMech", site: "https://culturebotai.github.io/HabitatMech/", page: "", license: "CC0-1.0", sources: "JGI GOLD ecosystem paths, BacDive isolation sources, PREGO, Madin et al.; ENVO/UBERON/FOODON/BTO via kg-microbe", extra: "686 curator-reviewed; 2,151 ontology-grounded; 176 corroborated by two or more sources. Browse habitat records or explore the semantic text map." }, + CommunityMech: { key: "communitymech", scale: "Community", tag: "Curated knowledge base of microbial communities, their interactions, cultivation and evidence.", records: 379, unit: "community records", root: "MicrobialCommunity", vocab: ["NCBITaxon", "CHEBI", "GO", "ENVO", "GTDB"], github: "https://github.com/CultureBotAI/CommunityMech", site: "https://culturebotai.github.io/CommunityMech/", page: "/communitymech/", license: "BSD-3-Clause", sources: "PubMed literature, GTDB, IMG, BioModels, CultureMech media, MediaIngredientMech ingredients", extra: "379 communities across 16 categories, with faceted record browsing, a PaCMAP embedding browser and a graph layout." }, TaxonMech: { key: "taxonmech", scale: "Taxa and strains", tag: "Microbial taxa and strains identified by NCBI Taxonomy and harmonized with GTDB, LPSN and BacDive.", records: 625960, unit: "taxon records", root: "TaxonRecord", vocab: ["NCBITaxon", "GTDB", "LPSN", "BacDive", "NCBI Assembly"], github: "https://github.com/CultureBotAI/TaxonMech", site: "https://culturebotai.github.io/TaxonMech/", page: "", license: "CC0-1.0", sources: "NCBI Taxonomy, GTDB, LPSN, BacDive, MediaDive, GOLD, Madin and BactoTraits through kg-microbe transforms", extra: "625,960 taxa, 100,745 distinct listed strains and 20,648 taxa with a type strain. Dedicated browsers expose StrainInfo deposits and AllTheBacteria assemblies with their evidence." }, - TraitMech: { key: "traitmech", scale: "Traits", tag: "Microbial ecophysiological trait knowledge base, seeded from METPO, one curated YAML per trait.", records: 630, unit: "trait records", root: "TraitRecord", vocab: ["METPO", "GO", "NCBITaxon", "CHEBI", "UniProt"], github: "https://github.com/CultureBotAI/TraitMech", site: "https://culturebotai.github.io/TraitMech/", page: "", license: "CC0-1.0", sources: "METPO (vendored OWL), GapMind and GTDB genome tables as candidates", extra: "630 traits across 10 categories; 75.7% embedded. Browse definitions, causal graphs, kg-microbe matches and nearest neighbors, or explore PaCMAP and graph layouts." }, - CellStructureMech: { key: "cellstructuremech", scale: "Cell structures", tag: "Ontology-grounded microbial cell structures: components, distribution, function and causal mechanism.", records: 360, unit: "structure records", root: "CellStructureRecord", vocab: ["GO", "NCBITaxon", "UniProt", "METPO", "Pfam"], github: "https://github.com/CultureBotAI/CellStructureMech", site: "https://culturebotai.github.io/CellStructureMech/", page: "", license: "CC0-1.0", sources: "GO cellular component, UniProt subcellular location, Complex Portal, EMDB/EMPIAR, PDB, TraitMech", extra: "360 structures across 13 categories, including 167 membrane organelles; 306 records are GO-grounded. Browse by category, kind and grounding status." }, - ProteinTraitsMech: { key: "proteintraitsmech", scale: "Proteins", tag: "Protein sequence, structure and function trait classes, one curated YAML per trait, evidence-backed.", records: 408978, unit: "protein trait records", root: "ProteinTraitRecord", vocab: ["InterPro", "UniProt", "RHEA", "Pfam", "GO", "CHEBI", "ARO"], github: "https://github.com/CultureBotAI/proteintraitsmech", site: "https://culturebotai.github.io/proteintraitsmech/", page: "", license: "CC0-1.0", sources: "InterPro, Pfam, CATH, SCOPe, ECOD, Rhea, ExPASy ENZYME, CARD/ARO, PROSITE, TCDB, COG, Reactome, METPO", extra: "118,280 structure, 127,082 sequence, 384 sequence-structure, 163,223 function and 9 evolution records. The corpus map uses text embeddings; a separate protein map covers 68,657 Swiss-Prot proteins." }, + TraitMech: { key: "traitmech", scale: "Traits", tag: "Microbial ecophysiological trait knowledge base, seeded from METPO, one curated YAML per trait.", records: 696, unit: "trait records", root: "TraitRecord", vocab: ["METPO", "GO", "NCBITaxon", "CHEBI", "UniProt"], github: "https://github.com/CultureBotAI/TraitMech", site: "https://culturebotai.github.io/TraitMech/", page: "", license: "CC0-1.0", sources: "METPO (vendored OWL), GapMind and GTDB genome tables as candidates", extra: "696 traits across 10 categories; 68.5% embedded. Browse definitions, causal graphs, kg-microbe matches and nearest neighbors, or explore PaCMAP and graph layouts." }, + CellStructureMech: { key: "cellstructuremech", scale: "Cell structures", tag: "Ontology-grounded microbial cell structures: components, distribution, function and causal mechanism.", records: 421, unit: "structure records", root: "CellStructureRecord", vocab: ["GO", "NCBITaxon", "UniProt", "METPO", "Pfam"], github: "https://github.com/CultureBotAI/CellStructureMech", site: "https://culturebotai.github.io/CellStructureMech/", page: "", license: "CC0-1.0", sources: "GO cellular component, UniProt subcellular location, Complex Portal, EMDB/EMPIAR, PDB, TraitMech", extra: "421 structures across 13 categories, including 177 membrane organelles; 367 records are GO-grounded. Browse by category, kind and grounding status." }, + ProteinTraitsMech: { key: "proteintraitsmech", scale: "Proteins", tag: "Protein sequence, structure and function trait classes, one curated YAML per trait, evidence-backed.", records: 429291, unit: "protein trait records", root: "ProteinTraitRecord", vocab: ["InterPro", "UniProt", "RHEA", "Pfam", "GO", "CHEBI", "ARO"], github: "https://github.com/CultureBotAI/proteintraitsmech", site: "https://culturebotai.github.io/proteintraitsmech/", page: "", license: "CC0-1.0", sources: "InterPro, Pfam, CATH, SCOPe, ECOD, Rhea, ExPASy ENZYME, CARD/ARO, PROSITE, TCDB, COG, Reactome, METPO", extra: "118,281 structure, 147,091 sequence, 384 sequence-structure, 163,526 function and 9 evolution records. The corpus map uses text embeddings; a separate protein map covers 68,657 Swiss-Prot proteins." }, NaturalProductMech: { key: "naturalproductmech", scale: "Natural products", tag: "One record per natural product structure: who makes it, from which gene cluster, and what it does.", records: 3115, unit: "natural product structures", root: "NaturalProductRecord", vocab: ["MIBiG", "NCBITaxon", "ChEBI", "NPAtlas", "PubChem", "UniProt"], github: "https://github.com/CultureBotAI/NaturalProductMech", site: "https://culturebotai.github.io/NaturalProductMech/", page: "", license: "CC0-1.0 code · CC BY 4.0 data", sources: "ChEBI, MIBiG gene clusters, LOTUS occurrences, CyanoMetDB, NPAtlas, PubChem BioAssay, BindingDB, NCBI Taxonomy", extra: "3,407 producer claims, including 805 supported by evidence addressing the organism; 2,342 records carry cited occurrences. Structure and corpus maps complement the record browser." }, AntibioticMech: { key: "antibioticmech", scale: "Antibiotics", tag: "One record per antimicrobial structure, harmonizing ChEBI and CARD with mechanism and evidence.", records: 2939, unit: "antimicrobial structures", root: "AntibioticRecord", vocab: ["CHEBI", "ARO", "CAS", "NCBITaxon", "PubChem", "DrugBank"], github: "https://github.com/CultureBotAI/AntibioticMech", site: "https://culturebotai.github.io/AntibioticMech/", page: "", license: "CC0-1.0 code · CC BY 4.0 data", sources: "ChEBI 3-star antimicrobial roles, CARD/ARO antibiotic molecules, PubChem structures, PHI-base, MIBiG", extra: "2,669 ontology-grounded and 270 minted identities; 454 records with mode of action, 282 with molecular targets and 16 with causal graphs. The chemical map places all 2,939 records by chiral molecular fingerprints." }, MediaIngredientMech: { key: "mediaingredientmech", scale: "Ingredients", tag: "LLM-assisted curation of media-ingredient ontology mappings with full audit trails.", records: 2951, unit: "ingredient records", root: "IngredientRecord", vocab: ["CHEBI", "CAS", "NCIT", "FOODON", "ENVO"], github: "https://github.com/CultureBotAI/MediaIngredientMech", site: "https://culturebotai.github.io/MediaIngredientMech/", page: "/mediaingredientmech/", license: "CC0-1.0", sources: "Ingredient strings aggregated from CultureMech recipes; OAK/OLS term services; ChEBI, FOODON, NCIT, MeSH, METPO", extra: "2,616 of 2,951 ingredients mapped (89%). Search by mapping status and quality, or explore ingredient PaCMAP and graph layouts." }, - CultureMech: { key: "culturemech", scale: "Media", tag: "Versioned, ontology-grounded knowledge base of microbial culture-media recipes.", records: 10657, unit: "published recipes", root: "MediaRecipe", vocab: ["CHEBI", "KEGG", "FOODON", "UBERON", "CAS"], github: "https://github.com/CultureBotAI/CultureMech", site: "https://culturebotai.github.io/CultureMech/", page: "/culturemech/", license: "CC0-1.0", sources: "MediaDive/DSMZ, TogoMedium, KOMODO, ATCC, JCM, BacDive (queued)", extra: "The published browser contains 10,657 recipes across five categories, with filters for target organisms and ingredients. Explore derived ingredient-based and direct medium-node embeddings, plus a graph layout." } + CultureMech: { key: "culturemech", scale: "Media", tag: "Versioned, ontology-grounded knowledge base of microbial culture-media recipes.", records: 6286, unit: "canonical media", root: "MediaRecipe", vocab: ["CHEBI", "KEGG", "FOODON", "UBERON", "CAS"], github: "https://github.com/CultureBotAI/CultureMech", site: "https://culturebotai.github.io/CultureMech/", page: "/culturemech/", license: "CC0-1.0", sources: "MediaDive/DSMZ, TogoMedium, KOMODO, ATCC, JCM, BacDive (queued)", extra: "6,286 deduplicated canonical media, merged from 15,878 source-specific normalized records that the published browser serves across five categories, with filters for target organisms and ingredients. Explore derived ingredient-based and direct medium-node embeddings, plus a graph layout." } }; // Directed cross-references between Mech records, schemas and curation practice. diff --git a/_fleet/mechs_template.md b/_fleet/mechs_template.md index ed9057e..c27a441 100644 --- a/_fleet/mechs_template.md +++ b/_fleet/mechs_template.md @@ -13,13 +13,13 @@ The X-Mech suite is a fleet of curated, ontology-grounded kno ## The Mechs -Each card carries its Mech's own site color. Hover a card to trace its ties in the graph above; use "Show in graph" to select it. The small print under each headline number gives reviewed records and merged pull requests; a Mech whose schema has no field recording review shows only the pull-request count, rather than a zero that would claim more than it knows. Card and graph totals reflect the published Mech pages checked on September 15, 2026; each Browse link is the source for its card. These published-browser totals may differ from the older record-corpus census below. Fleet membership and capability declarations come from . +Each card carries its Mech's own site color. Hover a card to trace its ties in the graph above; use "Show in graph" to select it. The small print under each headline number gives reviewed records and merged pull requests; a Mech whose schema has no field recording review shows only the pull-request count, rather than a zero that would claim more than it knows. Card and graph totals reflect the published Mech pages checked on September 20, 2026; each Browse link is the source for its card, except CultureMech, whose landing tile carries a legacy figure matching none of its data layers, so its card states the merged canonical count its own record index publishes. These published-browser totals may differ from the older record-corpus census below. Fleet membership and capability declarations come from .

HabitatMech

Habitat

Four habitat vocabularies harmonized into ENVO-grounded records that keep every source's attestation.

-
3,206habitat records · 684 reviewed
+
3,206habitat records · 686 reviewed

ENVONCBITaxonBTOUBERONFOODONGOLDBacDive
BrowseGitHubShow in graph
@@ -27,7 +27,7 @@ Each card carries its Mech's own site color. Hover a card to trace its ties in t

CommunityMech

Community

Curated knowledge base of microbial communities, their interactions, cultivation conditions and evidence.

-
374community records · 16 categories
+
379community records · 16 categories

NCBITaxonChEBIGOENVOGTDBPMID
PageBrowseGitHubShow in graph
@@ -43,7 +43,7 @@ Each card carries its Mech's own site color. Hover a card to trace its ties in t

TraitMech

Traits

Microbial ecophysiological trait knowledge base seeded from METPO, one curated YAML per trait, with causal mechanism graphs.

-
630trait records · 10 categories
+
696trait records · 10 categories

METPOGONCBITaxonChEBIUniProtPATO
BrowseGitHubShow in graph
@@ -51,7 +51,7 @@ Each card carries its Mech's own site color. Hover a card to trace its ties in t

CellStructureMech

Cell structures

Organelles, envelope layers, appendages, microcompartments and complexes: components, distribution, function and causal mechanism.

-
360structure records · 306 GO-grounded
+
421structure records · 367 GO-grounded

GONCBITaxonUniProtMETPOPfamPDB
BrowseGitHubShow in graph
@@ -59,7 +59,7 @@ Each card carries its Mech's own site color. Hover a card to trace its ties in t

ProteinTraitsMech

Proteins

Protein sequence, structure and function trait classes seeded from InterPro, Pfam, Rhea, CATH, SCOPe, CARD and more.

-
408,978protein trait records · 29 sources
+
429,291protein trait records · 34 sources

InterProUniProtRheaPfamGOChEBIARO
BrowseGitHubShow in graph
@@ -91,7 +91,7 @@ Each card carries its Mech's own site color. Hover a card to trace its ties in t

CultureMech

Media

Versioned, ontology-grounded knowledge base of culture-media recipes from MediaDive, TogoMedium, KOMODO and the major collections.

-
10,657published recipes · 5 categories
+
6,286canonical media · 5 categories

ChEBIKEGGFOODONUBERONCASNCBITaxon
PageBrowseGitHubShow in graph
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from bovine liver"],["mapped/Glycyrrhizic_Acid_Ammonium_Salt.yaml","Glycyrrhizic Acid, Ammonium Salt"],["mapped/Gold_Iii_Chloride_Hydrate.yaml","gold (III) chloride hydrate"],["mapped/Gramicidin.yaml","Gramicidin"],["mapped/Guanidine_Hydrochloride.yaml","Guanidine Hydrochloride"],["mapped/Gum_Arabic_From_Acacia_Tree.yaml","Gum arabic from acacia tree"],["mapped/HOMOPIPES.yaml","HOMOPIPES"],["mapped/Harmol_Hydrochloride.yaml","Harmol Hydrochloride"],["mapped/Hyaluronic_Acid_Sodium_Salt_From_Streptococcus_Equi.yaml","Hyaluronic acid sodium salt from Streptococcus equi"],["mapped/Hymecromone_Methyl_Ether.yaml","Hymecromone Methyl Ether"],["mapped/Indole-3-pyruvic_Acid.yaml","Indole-3-pyruvic acid"],["mapped/Indole_3-acetic_Acid_Sodium_Salt.yaml","indole 3-acetic acid sodium salt"],["mapped/Izalpinin.yaml","Izalpinin"],["mapped/KH2PO3.yaml","KH2PO3"],["mapped/Kcl.yaml","KCl"],["mapped/L-Asparagine_Monohydrate.yaml","L-Asparagine monohydrate"],["mapped/L-Aspartic_Acid_Potassium_Salt.yaml","L-Aspartic acid potassium salt"],["mapped/L-Aspartic_Acid_Sodium_Salt_Monohydrate.yaml","L-Aspartic acid sodium salt monohydrate"],["mapped/L-Cysteic_Acid_Monohydrate.yaml","L-Cysteic acid monohydrate"],["mapped/L-Glutamic_Acid_Monopotassium_Salt_Monohydrate.yaml","L-Glutamic acid monopotassium salt monohydrate"],["mapped/L-Histidine_Monohydrochloride_Monohydrate.yaml","L-Histidine monohydrochloride monohydrate"],["mapped/L-Malic_Acid_Disodium_Salt_Monohydrate.yaml","L-Malic acid disodium salt monohydrate"],["mapped/L-Meta-tyrosine.yaml","L-Meta-tyrosine"],["mapped/L-Rhamnose_Monohydrate.yaml","L-Rhamnose monohydrate"],["mapped/L-%CE%B1-phosphatidylinositol_From_Glycine_Max_Soybean.yaml","L-α-Phosphatidylinositol from Glycine max (soybean)"],["mapped/Lacto-N-fucopentaose_I.yaml","Lacto-N-fucopentaose I"],["mapped/Lacto-N-fucopentaose_III.yaml","Lacto-N-fucopentaose III"],["mapped/Lacto-N-tetraose.yaml","Lacto-N-tetraose"],["mapped/Lanthanum_Iii_Chloride.yaml","Lanthanum (III) chloride"],["mapped/Lignin_Alkali.yaml","Lignin alkali"],["mapped/Lithium_Chloride_Hydrate.yaml","Lithium chloride hydrate"],["mapped/Locust_Bean_Gum.yaml","Locust bean gum"],["mapped/Lysozyme.yaml","Lysozyme"],["mapped/MES_Hydrat.yaml","MES Hydrat"],["mapped/MME_Trace_Minerals.yaml","MME Trace Minerals"],["mapped/Magnesium_Nitrate_Hexahydrate.yaml","magnesium nitrate hexahydrate"],["mapped/Malondialdehyde_Tetrabutylammonium_Salt.yaml","Malondialdehyde tetrabutylammonium salt"],["mapped/Maltotriose_Hydrate.yaml","Maltotriose hydrate"],["mapped/Mannan_From_Saccharomyces_Cerevisiae.yaml","Mannan from Saccharomyces cerevisiae"],["mapped/Mc_trace_minerals.yaml","Mc_trace_minerals"],["mapped/Mc_trace_minerals_SO4free.yaml","Mc_trace_minerals_SO4free"],["mapped/Menthol.yaml","Menthol"],["mapped/Methyl-2-Hydroxy-Phenylproprionate.yaml","Methyl-2-Hydroxy-Phenylproprionate"],["mapped/Methyl-alpha-D-xylopyranoside.yaml","methyl-alpha-D-xylopyranoside"],["mapped/Methyl-beta-D-xylopyranoside.yaml","methyl-beta-D-xylopyranoside"],["mapped/Methyl-beta-L-arabinopyranoside.yaml","methyl-beta-L-arabinopyranoside"],["mapped/Methyl-trans-p-coumarate.yaml","methyl-trans-p-coumarate"],["mapped/Methyl_Ferulate.yaml","methyl ferulate"],["mapped/Methylxanthoxylin.yaml","Methylxanthoxylin"],["mapped/Mexicanolide.yaml","Mexicanolide"],["mapped/MreB_Perturbing_Compound_A22.yaml","MreB Perturbing Compound A22"],["mapped/Mucin_Bovine_Submaxillary_Gland_Type_I-S.yaml","Mucin, Bovine Submaxillary Gland, type I-S"],["mapped/Mucin_From_Porcine_StomachType_II.yaml","Mucin from porcine stomach,Type II"],["mapped/Mucin_From_Porcine_Stomach_Type_III.yaml","Mucin from porcine stomach type III"],["mapped/N-_3-oxohexanoyl-dl-homoserine_Lactone.yaml","N-(3-oxohexanoyl)-DL-homoserine lactone"],["mapped/N-lauroylsarcosine_Sodium_Salt.yaml","N-lauroylsarcosine sodium salt"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Na2glycerophosphate5h2o.yaml","Na2glycerophosphate•5H2O"],["mapped/Nah2po4h2o.yaml","NaH2PO4•H2O"],["mapped/Nalidixic_Acid_Sodium_Salt.yaml","Nalidixic acid sodium salt"],["mapped/Nigericin_Sodium_Salt.yaml","Nigericin sodium salt"],["mapped/Nitrilotriacetic_Acid_Disodium_Salt.yaml","Nitrilotriacetic acid disodium salt"],["mapped/P-lacto-N-neo-hexaose.yaml","p-lacto-N-neo-hexaose"],["mapped/PIPES_Sesquisodium_Salt.yaml","PIPES sesquisodium salt"],["mapped/Palatinose_Hydrate.yaml","palatinose hydrate"],["mapped/Palmatine_Chloride.yaml","Palmatine chloride"],["mapped/Parachlorophenylalanine.yaml","Parachlorophenylalanine"],["mapped/Pediocin.yaml","Pediocin"],["mapped/Pentasodium_Tripolyphosphate_Hexahydrate.yaml","Pentasodium tripolyphosphate hexahydrate"],["mapped/Peucenin.yaml","Peucenin"],["mapped/Phenazine_Ethosulfate.yaml","Phenazine ethosulfate"],["mapped/Phosphomycin_Disodium_Salt.yaml","Phosphomycin disodium salt"],["mapped/Piperic_Acid.yaml","Piperic acid"],["mapped/Platinum_Iv_Chloride.yaml","platinum (IV) chloride"],["mapped/Poly_3-hydroxybutyric_Acid.yaml","Poly(3-hydroxybutyric acid)"],["mapped/Polygalacturonic_Acid_Sodium_Salt.yaml","Polygalacturonic acid sodium salt"],["mapped/Potassium_4-aminobenzoate.yaml","Potassium 4-aminobenzoate"],["mapped/Potassium_Aluminum_Chloride.yaml","Potassium aluminum chloride"],["mapped/Potassium_Citramalate_Monohydrate.yaml","potassium citramalate monohydrate"],["mapped/Potassium_Hexahydroxoantimonate.yaml","potassium hexahydroxoantimonate"],["mapped/Potassium_Oxalate_Monohydrate.yaml","Potassium oxalate monohydrate"],["mapped/Potassium_Phosphate_Dibasic_Trihydrate.yaml","Potassium phosphate dibasic trihydrate"],["mapped/Potassium_Polysulfide.yaml","potassium (poly)sulfide"],["mapped/Potassium_Tellurate_Hydrate.yaml","potassium tellurate hydrate"],["mapped/Potassium_Tellurite_Hydrate.yaml","Potassium tellurite hydrate"],["mapped/Prenyletin.yaml","Prenyletin"],["mapped/Pretomanid.yaml","Pretomanid"],["mapped/Pustulan_B-1-6_Glucan.yaml","Pustulan (b-1-6 glucan)"],["mapped/Putrescine_Dihydrochloride.yaml","Putrescine Dihydrochloride"],["mapped/Quinine_Hdrochloride.yaml","Quinine Hdrochloride"],["mapped/Rac-3-Hydroxypentanoic_Acid.yaml","rac-3-Hydroxypentanoic Acid"],["mapped/Rhamnogalacturonan_From_Soy_Bean_Pectic_Fibre.yaml","Rhamnogalacturonan from soy bean pectic fibre"],["mapped/Rhamnogalacturonan_I_From_Potato_Pectic_Fiber.yaml","Rhamnogalacturonan I from potato pectic fiber"],["mapped/Rhodinyl_Acetate.yaml","Rhodinyl Acetate"],["mapped/Robustic_Acid.yaml","Robustic Acid"],["mapped/Rutilantinone.yaml","Rutilantinone"],["mapped/S-adenosyl_Homocysteine.yaml","S-adenosyl Homocysteine"],["mapped/Sclareolide.yaml","Sclareolide"],["mapped/Sialyllacto-N-tetraose_D.yaml","Sialyllacto-N-tetraose d"],["mapped/Silver_Sulfate.yaml","silver sulfate"],["mapped/Simvastatin_Hydroxy_Acid_Ammonium_Salt.yaml","Simvastatin Hydroxy Acid Ammonium Salt"],["mapped/Sisomicin_Sulfate_Salt.yaml","Sisomicin sulfate salt"],["mapped/Sn-Glycerol_3-phosphate_Lithium_Salt.yaml","sn-Glycerol 3-phosphate lithium salt"],["mapped/Sn-glycerol_3-phosphate_Bis_Cyclohexylammonium_Salt.yaml","sn-Glycerol 3-phosphate bis(cyclohexylammonium) salt"],["mapped/Sodium_2-bromoethanesulfonate.yaml","Sodium 2-bromoethanesulfonate"],["mapped/Sodium_Adipate.yaml","Sodium adipate"],["mapped/Sodium_Antimonate.yaml","Sodium antimonate"],["mapped/Sodium_Carbonate_Monohydrate.yaml","sodium carbonate monohydrate"],["mapped/Sodium_Cholate_Hydrate.yaml","Sodium cholate hydrate"],["mapped/Sodium_D-Lactate.yaml","Sodium D-Lactate"],["mapped/Sodium_Deoxycholate_Monohydrate.yaml","Sodium deoxycholate monohydrate"],["mapped/Sodium_Ethyl_Sulfate.yaml","Sodium ethyl sulfate"],["mapped/Sodium_Hypophosphite_Monohydrate.yaml","Sodium hypophosphite monohydrate"],["mapped/Sodium_Isethionate.yaml","sodium isethionate"],["mapped/Sodium_Methanesulfonate.yaml","Sodium methanesulfonate"],["mapped/Sodium_Perchlorate_Monohydrate.yaml","Sodium perchlorate monohydrate"],["mapped/Sodium_Persulfate.yaml","Sodium Persulfate"],["mapped/Sodium_Phosphite_Dibasic_Pentahydrate.yaml","Sodium phosphite dibasic pentahydrate"],["mapped/Sodium_Pyrophosphate_Dibasic.yaml","Sodium pyrophosphate dibasic"],["mapped/Sodium_Succinate_Dibasic.yaml","Sodium succinate dibasic"],["mapped/Sodium_Thiophosphate_Tribasic_Hydrate.yaml","Sodium thiophosphate tribasic hydrate"],["mapped/Soya_Peptone.yaml","Soya peptone"],["mapped/Sparassol.yaml","Sparassol"],["mapped/Spiramycin.yaml","Spiramycin"],["mapped/Stachyose_Hydrate.yaml","Stachyose hydrate"],["mapped/Sucrose-6-monophosphate_Dipotassium_Salt.yaml","Sucrose-6-monophosphate dipotassium salt"],["mapped/Sulfamethazine_Sodium_Salt.yaml","Sulfamethazine sodium salt"],["mapped/Sulfaquinoxaline.yaml","Sulfaquinoxaline"],["mapped/Sulfaquinoxaline_Sodium_Salt.yaml","Sulfaquinoxaline sodium salt"],["mapped/Sulfur-free_DL_Minerals.yaml","Sulfur-free DL minerals"],["mapped/Sunflower_Oil.yaml","Sunflower oil"],["mapped/Sutezolid.yaml","Sutezolid"],["mapped/Synephrine_Tartrate.yaml","Synephrine Tartrate"],["mapped/TAPS_Sodium_Salt.yaml","TAPS sodium salt"],["mapped/Tapso.yaml","TAPSO"],["mapped/Tara_Gum.yaml","Tara gum"],["mapped/Terpene_Hydrate.yaml","Terpene hydrate"],["mapped/Tetrakis_Hydroxymethylphosphonium_Sulfate.yaml","Tetrakis(hydroxymethyl)phosphonium sulfate"],["mapped/Theaflavin_Digallate.yaml","Theaflavin Digallate"],["mapped/Timentin.yaml","Timentin"],["mapped/TitaniumIII_Chloride.yaml","TitaniumIII chloride"],["mapped/Tobramycin_Sulfate_Salt.yaml","Tobramycin sulfate salt"],["mapped/Tomatidine_Hydrochloride.yaml","Tomatidine Hydrochloride"],["mapped/UW_Concentrated_Base.yaml","UW concentrated base"],["mapped/UW_Concentrated_Base_No_Sulfur.yaml","UW concentrated base no sulfur"],["mapped/Uranyl_Acetate.yaml","Uranyl acetate"],["mapped/Uranyl_Acetate_Dihydrate.yaml","Uranyl Acetate Dihydrate"],["mapped/Uridine_5-monophosphate_Disodium_Salt.yaml","Uridine 5-monophosphate disodium salt"],["mapped/Ursololactone_Acetate.yaml","Ursololactone Acetate"],["mapped/Vanadium_Chloride.yaml","vanadium chloride"],["mapped/Vancomycin_Hydrochloride_Hydrate.yaml","Vancomycin Hydrochloride Hydrate"],["mapped/Veratrine_Hydrochloride.yaml","Veratrine hydrochloride"],["mapped/Xanthan_From_Xanthomonas_Campestris.yaml","Xanthan from Xanthomonas campestris"],["mapped/Xyloglucan_From_Tamarind.yaml","Xyloglucan from tamarind"],["mapped/Zymosan.yaml","Zymosan"],["mapped/backups/2-6-dihydroxybenzoic_Acid_20260807_213601.yaml","2-6-dihydroxybenzoic acid"],["mapped/%CE%911-Acid_Glycoprotein_From_Bovine_Plasma.yaml","α1-Acid Glycoprotein from bovine plasma"]]} \ No newline at end of file +{"mech":"MediaIngredientMech","prefix":"CAS","base":"https://github.com/CultureBotAI/MediaIngredientMech/blob/main/data/ingredients/","total":278,"records":[["mapped/1-ethyl-3-methylimidazolium_Acetate.yaml","1-ethyl-3-methylimidazolium acetate"],["mapped/13-Hexanediol.yaml","1,3-Hexanediol"],["mapped/14-B-D-Galactobiose.yaml","1,4-B-D-Galactobiose"],["mapped/16-Hexanediamine.yaml","1,6-Hexanediamine"],["mapped/2-6-dihydroxybenzoic_Acid.yaml","2,6-dihydroxybenzoic acid"],["mapped/2-Deoxy-D-ribonic_Acid_Lithium_Salt.yaml","2-Deoxy-D-ribonic acid lithium salt"],["mapped/2-Deoxyadenosine_Monohydrate.yaml","2-Deoxyadenosine monohydrate"],["mapped/2-Hydroxybutyric_Acid_Sodium_Salt.yaml","2-Hydroxybutyric acid sodium salt"],["mapped/2-Keto-D-gluconic_Acid_Hemicalcium_Salt_Hydrate.yaml","2-Keto-D-gluconic acid hemicalcium salt hydrate"],["mapped/2-Keto-D-gluconic_Acid_Hemicalcium_Salt_Monohydrate.yaml","2-Keto-D-gluconic acid hemicalcium salt monohydrate"],["mapped/2-oxobutyric_Acid_Sodium_Salt.yaml","2-oxobutyric acid sodium salt"],["mapped/22-dibromo-2-cyanoacetamide.yaml","2,2-dibromo-2-cyanoacetamide"],["mapped/25-Dihydroxy-4-Methoxychalcone.yaml","2',5'-Dihydroxy-4-Methoxychalcone"],["mapped/3-O-Methyl-D-glucopyranose.yaml","3-O-Methyl-D-glucopyranose"],["mapped/3-Pyridinesulfonic_Acid.yaml","3-Pyridinesulfonic acid"],["mapped/3-fucosyllactose.yaml","3'-fucosyllactose"],["mapped/3-sialyllactose_Sodium_Salt.yaml","3'-sialyllactose sodium salt"],["mapped/34-Dihydroxyflavone.yaml","3,4'-Dihydroxyflavone"],["mapped/36-Dihydroxyflavone.yaml","3',6-Dihydroxyflavone"],["mapped/4-Hydroxymandelic_Acid_Monohydrate.yaml","4-Hydroxymandelic acid monohydrate"],["mapped/4-Methoxyflavone.yaml","4'-Methoxyflavone"],["mapped/4-Methyl-2-oxopentanoic_Acid_Sodium_Salt.yaml","4-Methyl-2-oxopentanoic acid sodium salt"],["mapped/5-Fluoroorotic_Acid_Hydrate.yaml","5-Fluoroorotic acid hydrate"],["mapped/5-Keto-D-Gluconic_Acid_Potassium_Salt.yaml","5-Keto-D-Gluconic Acid potassium salt"],["mapped/5-_2-thienyl-pentanoic_Acid.yaml","5-(2-thienyl)-pentanoic acid"],["mapped/574-Trimethoxyisoflavone.yaml","5,7,4'-Trimethoxyisoflavone"],["mapped/5z-4-bromo-5-_Bromomethylene-2_5h-furanone.yaml","(5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone"],["mapped/6-O-sialyllactose_Sodium_Salt.yaml","6'-O-sialyllactose sodium salt"],["mapped/6-Pentyl-2H-pyran-2-one.yaml","6-Pentyl-2H-pyran-2-one"],["mapped/72-Dihydroxyflavone.yaml","7,2'-Dihydroxyflavone"],["mapped/A-Ketoglutaric_Acid_Disodium_Salt_Hydrate.yaml","a-Ketoglutaric acid disodium salt hydrate"],["mapped/AQDS.yaml","AQDS"],["mapped/Acriflavine.yaml","Acriflavine"],["mapped/Adenine_Hydrochloride_Hydrate.yaml","Adenine hydrochloride hydrate"],["mapped/Aesculetin.yaml","Aesculetin"],["mapped/Aluminum_Chloride_Hydrate.yaml","Aluminum chloride hydrate"],["mapped/Ammonium_Molybdate_Tetrahydrate.yaml","ammonium molybdate tetrahydrate"],["mapped/Ammonium_Sulfide_Solution.yaml","ammonium sulfide solution"],["mapped/Ammonium_Sulfite_Monohydrate.yaml","Ammonium sulfite monohydrate"],["mapped/Anabasine_Hydrochloride.yaml","Anabasine Hydrochloride"],["mapped/Andirobin.yaml","Andirobin"],["mapped/Anisodamine_Hydrobromide.yaml","Anisodamine Hydrobromide ()"],["mapped/Apigenin_Dimethyl_Ether.yaml","Apigenin Dimethyl Ether"],["mapped/Apramycin_Sulfate_Salt.yaml","Apramycin sulfate salt"],["mapped/Arabinan_From_Sugar_Beet.yaml","Arabinan from Sugar Beet"],["mapped/Arabinobiose.yaml","Arabinobiose"],["mapped/Arabinotriose.yaml","Arabinotriose"],["mapped/Artepaulin.yaml","Artepaulin"],["mapped/Atrazin.yaml","Atrazin"],["mapped/Avidin.yaml","Avidin"],["mapped/B-Mannan_Borohydrate_Reduced_Carob_Seed.yaml","b-Mannan borohydrate reduced carob seed"],["mapped/Bathocuproine_Disulfonic_Acid_Disodium_Salt.yaml","Bathocuproine disulfonic acid disodium salt"],["mapped/Benzylhydrazine_Hydrochloride.yaml","Benzylhydrazine Hydrochloride"],["mapped/Beta-Glycerophosphate_Disodium_Salt_Hydrate.yaml","Beta-Glycerophosphate disodium salt hydrate"],["mapped/Betaine_Hydrochloride.yaml","Betaine hydrochloride"],["mapped/Biochanin_A_Diacetate.yaml","Biochanin a diacetate"],["mapped/Bismuth_Iii_Chloride.yaml","bismuth(III) chloride"],["mapped/Bovine_Serum_Albumin.yaml","bovine serum albumin"],["mapped/Cadmium_Acetate_Dihydrate.yaml","Cadmium acetate dihydrate"],["mapped/Caffeine_Hydrobromide.yaml","Caffeine Hydrobromide"],["mapped/Carboxymethyl_Cellulose.yaml","Carboxymethyl cellulose"],["mapped/Carnitine_Dl_Hydrochloride.yaml","Carnitine (Dl) Hydrochloride"],["mapped/Carnitine_Hydrochloride.yaml","Carnitine Hydrochloride"],["mapped/Ceftazidime_Hydrate.yaml","Ceftazidime hydrate"],["mapped/Cetomacrogol_1000.yaml","Cetomacrogol 1000"],["mapped/Cholin_Acetate.yaml","Cholin acetate"],["mapped/Cholinium_Dihydrogen_Phosphate.yaml","Cholinium dihydrogen phosphate"],["mapped/Chondroitin_Sulfate_A_Sodium_Salt_From_Bovine_Trachea.yaml","Chondroitin sulfate A sodium salt from bovine trachea"],["mapped/Chrysanthemic_Acid_Ethyl_Ester.yaml","Chrysanthemic Acid, Ethyl Ester"],["mapped/Cimicifugoside_H1.yaml","Cimicifugoside H1"],["mapped/Corn_Steep_Liquor_Glucose_Fumarate.yaml","Corn Steep Liquor + Glucose + Fumarate"],["mapped/Cotarnine_Chloride.yaml","Cotarnine Chloride"],["mapped/CrKSO42_X_12_H2O.yaml","CrKSO42 x 12 H2O"],["mapped/Curdlan.yaml","Curdlan"],["mapped/D-Fructose_6-phosphate_Disodium_Salt_Hydrate.yaml","D-Fructose 6-phosphate disodium salt hydrate"],["mapped/D-Galacturonic_Acid_Monohydrate.yaml","D-Galacturonic Acid monohydrate"],["mapped/D-Glucosamine_Hydrochloride.yaml","D-Glucosamine Hydrochloride"],["mapped/D-Glucose-6-Phosphate_Sodium_Salt.yaml","D-Glucose-6-Phosphate sodium salt"],["mapped/D-Glucuronic_Acid_Sodium_Salt_Monohydrate.yaml","D-Glucuronic acid sodium salt monohydrate"],["mapped/D-Leucrose.yaml","D-Leucrose"],["mapped/D-Maltose_Monohydrate.yaml","D-Maltose monohydrate"],["mapped/D-Mannose_6-phosphate_Sodium_Salt.yaml","D-Mannose 6-phosphate sodium salt"],["mapped/D-Raffinose_Pentahydrate.yaml","D-Raffinose pentahydrate"],["mapped/D-Saccharic_Acid_Potassium_Salt.yaml","D-Saccharic acid potassium salt"],["mapped/D-_-melezitose_Hydrate.yaml","D-(+)-Melezitose hydrate"],["mapped/D-_-melezitose_Monohydrate.yaml","D-(+)-melezitose monohydrate"],["mapped/D-limonene.yaml","d-limonene"],["mapped/D-xylose_5-phosphate_Lithium_Salt.yaml","D-xylose 5-phosphate lithium salt"],["mapped/DAMPA.yaml","DAMPA"],["mapped/DEANONOate.yaml","DEANONOate"],["mapped/DL-2-Aminobutyric_Acid.yaml","DL-2-Aminobutyric acid"],["mapped/DL-3-Aminoisobutyric_Acid.yaml","DL-3-Aminoisobutyric acid"],["mapped/DL-3-Hydroxyisobutyric_Acid_Sodium_Salt.yaml","DL-3-Hydroxyisobutyric acid sodium salt"],["mapped/DL-Glyceraldehyde_3-phosphate.yaml","DL-Glyceraldehyde 3-phosphate"],["mapped/DL-Glycerol_1-phosphate_Sodium_Salt_Hydrate.yaml","DL-Glycerol 1-phosphate sodium salt hydrate"],["mapped/DL-Histidine_Monohydrochloride_Monohydrate.yaml","DL-Histidine monohydrochloride monohydrate"],["mapped/DL-glyceraldehyde.yaml","DL-glyceraldehyde"],["mapped/DNA_From_Salmon.yaml","DNA from Salmon"],["mapped/Deuterated_Glucose.yaml","deuterated glucose"],["mapped/Dimethylfraxetin.yaml","Dimethylfraxetin"],["mapped/Dimethylsulfoniopropionate_Hydrochloride.yaml","Dimethylsulfoniopropionate hydrochloride"],["mapped/Disodium_Glutarate.yaml","Disodium Glutarate"],["mapped/Duartin.yaml","Duartin (-)"],["mapped/EDTA_Tetrasodium_Tetrahydrate_Salt.yaml","EDTA tetrasodium tetrahydrate salt"],["mapped/Ethylenediamine-NN-disuccinic_Acid.yaml","Ethylenediamine-N,N'-disuccinic acid"],["mapped/Europium_Iii_Chloride.yaml","Europium(III) chloride"],["mapped/FSL.yaml","FSL"],["mapped/Fosmidomycin_Sodium_Salt_Hydrate.yaml","Fosmidomycin sodium salt hydrate"],["mapped/Fructooligosaccharides_Fos.yaml","Fructooligosaccharides (FOS)"],["mapped/Fructose-asparagine.yaml","Fructose-asparagine"],["mapped/Furaltadone_Hydrochloride.yaml","Furaltadone hydrochloride"],["mapped/Fusidic_Acid_Sodium_Salt.yaml","Fusidic acid sodium salt"],["mapped/G418_Disulfate_Salt_Solution.yaml","G418 disulfate salt solution"],["mapped/Galactomannan_From_Guar.yaml","Galactomannan from guar"],["mapped/Galactose_1-phosphate_Dipotassium_Salt_Pentahydrate.yaml","Galactose 1-phosphate dipotassium salt pentahydrate"],["mapped/Gallium_Iiichloride.yaml","Gallium(III)chloride"],["mapped/Gepotidacin.yaml","Gepotidacin"],["mapped/Glucomannan_Konjac.yaml","Glucomannan (konjac)"],["mapped/Glucuronamide.yaml","Glucuronamide"],["mapped/Gly-DL-Asp.yaml","Gly-DL-Asp"],["mapped/Gly-Gln_Monohydrate.yaml","Gly-Gln monohydrate"],["mapped/Glycerol_Phosphate_Disodium_Salt_Hydrate.yaml","Glycerol phosphate disodium salt hydrate"],["mapped/Glycogen_From_Bovine_Liver.yaml","Glycogen from bovine liver"],["mapped/Glycyrrhizic_Acid_Ammonium_Salt.yaml","Glycyrrhizic Acid, Ammonium Salt"],["mapped/Gold_Iii_Chloride_Hydrate.yaml","gold (III) chloride hydrate"],["mapped/Gramicidin.yaml","Gramicidin"],["mapped/Guanidine_Hydrochloride.yaml","Guanidine Hydrochloride"],["mapped/Gum_Arabic_From_Acacia_Tree.yaml","Gum arabic from acacia tree"],["mapped/HOMOPIPES.yaml","HOMOPIPES"],["mapped/Harmol_Hydrochloride.yaml","Harmol Hydrochloride"],["mapped/Hyaluronic_Acid_Sodium_Salt_From_Streptococcus_Equi.yaml","Hyaluronic acid sodium salt from Streptococcus equi"],["mapped/Hymecromone_Methyl_Ether.yaml","Hymecromone Methyl Ether"],["mapped/Indole-3-pyruvic_Acid.yaml","Indole-3-pyruvic acid"],["mapped/Indole_3-acetic_Acid_Sodium_Salt.yaml","indole 3-acetic acid sodium salt"],["mapped/Izalpinin.yaml","Izalpinin"],["mapped/KH2PO3.yaml","KH2PO3"],["mapped/Kcl.yaml","KCl"],["mapped/L-Asparagine_Monohydrate.yaml","L-Asparagine monohydrate"],["mapped/L-Aspartic_Acid_Potassium_Salt.yaml","L-Aspartic acid potassium salt"],["mapped/L-Aspartic_Acid_Sodium_Salt_Monohydrate.yaml","L-Aspartic acid sodium salt monohydrate"],["mapped/L-Cysteic_Acid_Monohydrate.yaml","L-Cysteic acid monohydrate"],["mapped/L-Glutamic_Acid_Monopotassium_Salt_Monohydrate.yaml","L-Glutamic acid monopotassium salt monohydrate"],["mapped/L-Histidine_Monohydrochloride_Monohydrate.yaml","L-Histidine monohydrochloride monohydrate"],["mapped/L-Malic_Acid_Disodium_Salt_Monohydrate.yaml","L-Malic acid disodium salt monohydrate"],["mapped/L-Meta-tyrosine.yaml","L-Meta-tyrosine"],["mapped/L-Rhamnose_Monohydrate.yaml","L-Rhamnose monohydrate"],["mapped/L-%CE%B1-phosphatidylinositol_From_Glycine_Max_Soybean.yaml","L-α-Phosphatidylinositol from Glycine max (soybean)"],["mapped/Lacto-N-fucopentaose_I.yaml","Lacto-N-fucopentaose I"],["mapped/Lacto-N-fucopentaose_III.yaml","Lacto-N-fucopentaose III"],["mapped/Lacto-N-tetraose.yaml","Lacto-N-tetraose"],["mapped/Lanthanum_Iii_Chloride.yaml","Lanthanum (III) chloride"],["mapped/Lignin_Alkali.yaml","Lignin alkali"],["mapped/Lithium_Chloride_Hydrate.yaml","Lithium chloride hydrate"],["mapped/Locust_Bean_Gum.yaml","Locust bean gum"],["mapped/Lysozyme.yaml","Lysozyme"],["mapped/MES_Hydrat.yaml","MES Hydrat"],["mapped/MME_Trace_Minerals.yaml","MME Trace Minerals"],["mapped/Magnesium_Nitrate_Hexahydrate.yaml","magnesium nitrate hexahydrate"],["mapped/Malondialdehyde_Tetrabutylammonium_Salt.yaml","Malondialdehyde tetrabutylammonium salt"],["mapped/Maltotriose_Hydrate.yaml","Maltotriose hydrate"],["mapped/Mannan_From_Saccharomyces_Cerevisiae.yaml","Mannan from Saccharomyces cerevisiae"],["mapped/Mc_trace_minerals.yaml","Mc_trace_minerals"],["mapped/Mc_trace_minerals_SO4free.yaml","Mc_trace_minerals_SO4free"],["mapped/Menthol.yaml","Menthol"],["mapped/Methyl-2-Hydroxy-Phenylproprionate.yaml","Methyl-2-Hydroxy-Phenylproprionate"],["mapped/Methyl-alpha-D-xylopyranoside.yaml","methyl-alpha-D-xylopyranoside"],["mapped/Methyl-beta-D-xylopyranoside.yaml","methyl-beta-D-xylopyranoside"],["mapped/Methyl-beta-L-arabinopyranoside.yaml","methyl-beta-L-arabinopyranoside"],["mapped/Methyl-trans-p-coumarate.yaml","methyl-trans-p-coumarate"],["mapped/Methyl_Ferulate.yaml","methyl ferulate"],["mapped/Methylxanthoxylin.yaml","Methylxanthoxylin"],["mapped/Mexicanolide.yaml","Mexicanolide"],["mapped/MreB_Perturbing_Compound_A22.yaml","MreB Perturbing Compound A22"],["mapped/Mucin_Bovine_Submaxillary_Gland_Type_I-S.yaml","Mucin, Bovine Submaxillary Gland, type I-S"],["mapped/Mucin_From_Porcine_StomachType_II.yaml","Mucin from porcine stomach,Type II"],["mapped/Mucin_From_Porcine_Stomach_Type_III.yaml","Mucin from porcine stomach type III"],["mapped/N-_3-oxohexanoyl-dl-homoserine_Lactone.yaml","N-(3-oxohexanoyl)-DL-homoserine lactone"],["mapped/N-lauroylsarcosine_Sodium_Salt.yaml","N-lauroylsarcosine sodium salt"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Na2glycerophosphate5h2o.yaml","Na2glycerophosphate•5H2O"],["mapped/Nah2po4h2o.yaml","NaH2PO4•H2O"],["mapped/Nalidixic_Acid_Sodium_Salt.yaml","Nalidixic acid sodium salt"],["mapped/Nigericin_Sodium_Salt.yaml","Nigericin sodium salt"],["mapped/Nitrilotriacetic_Acid_Disodium_Salt.yaml","Nitrilotriacetic acid disodium salt"],["mapped/P-lacto-N-neo-hexaose.yaml","p-lacto-N-neo-hexaose"],["mapped/PIPES_Sesquisodium_Salt.yaml","PIPES sesquisodium salt"],["mapped/Palatinose_Hydrate.yaml","palatinose hydrate"],["mapped/Palmatine_Chloride.yaml","Palmatine chloride"],["mapped/Parachlorophenylalanine.yaml","Parachlorophenylalanine"],["mapped/Pediocin.yaml","Pediocin"],["mapped/Pentasodium_Tripolyphosphate_Hexahydrate.yaml","Pentasodium tripolyphosphate hexahydrate"],["mapped/Peucenin.yaml","Peucenin"],["mapped/Phenazine_Ethosulfate.yaml","Phenazine ethosulfate"],["mapped/Phosphomycin_Disodium_Salt.yaml","Phosphomycin disodium salt"],["mapped/Piperic_Acid.yaml","Piperic acid"],["mapped/Platinum_Iv_Chloride.yaml","platinum (IV) chloride"],["mapped/Poly_3-hydroxybutyric_Acid.yaml","Poly(3-hydroxybutyric acid)"],["mapped/Polygalacturonic_Acid_Sodium_Salt.yaml","Polygalacturonic acid sodium salt"],["mapped/Potassium_4-aminobenzoate.yaml","Potassium 4-aminobenzoate"],["mapped/Potassium_Aluminum_Chloride.yaml","Potassium aluminum chloride"],["mapped/Potassium_Citramalate_Monohydrate.yaml","potassium citramalate monohydrate"],["mapped/Potassium_Hexahydroxoantimonate.yaml","potassium hexahydroxoantimonate"],["mapped/Potassium_Oxalate_Monohydrate.yaml","Potassium oxalate monohydrate"],["mapped/Potassium_Phosphate_Dibasic_Trihydrate.yaml","Potassium phosphate dibasic trihydrate"],["mapped/Potassium_Polysulfide.yaml","potassium (poly)sulfide"],["mapped/Potassium_Tellurate_Hydrate.yaml","potassium tellurate hydrate"],["mapped/Potassium_Tellurite_Hydrate.yaml","Potassium tellurite hydrate"],["mapped/Prenyletin.yaml","Prenyletin"],["mapped/Pretomanid.yaml","Pretomanid"],["mapped/Pustulan_B-1-6_Glucan.yaml","Pustulan (b-1-6 glucan)"],["mapped/Putrescine_Dihydrochloride.yaml","Putrescine Dihydrochloride"],["mapped/Quinine_Hdrochloride.yaml","Quinine Hdrochloride"],["mapped/Rac-3-Hydroxypentanoic_Acid.yaml","rac-3-Hydroxypentanoic Acid"],["mapped/Rhamnogalacturonan_From_Soy_Bean_Pectic_Fibre.yaml","Rhamnogalacturonan from soy bean pectic fibre"],["mapped/Rhamnogalacturonan_I_From_Potato_Pectic_Fiber.yaml","Rhamnogalacturonan I from potato pectic fiber"],["mapped/Rhodinyl_Acetate.yaml","Rhodinyl Acetate"],["mapped/Robustic_Acid.yaml","Robustic Acid"],["mapped/Rutilantinone.yaml","Rutilantinone"],["mapped/S-adenosyl_Homocysteine.yaml","S-adenosyl Homocysteine"],["mapped/Sclareolide.yaml","Sclareolide"],["mapped/Sialyllacto-N-tetraose_D.yaml","Sialyllacto-N-tetraose d"],["mapped/Silver_Sulfate.yaml","silver sulfate"],["mapped/Simvastatin_Hydroxy_Acid_Ammonium_Salt.yaml","Simvastatin Hydroxy Acid Ammonium Salt"],["mapped/Sisomicin_Sulfate_Salt.yaml","Sisomicin sulfate salt"],["mapped/Sn-Glycerol_3-phosphate_Lithium_Salt.yaml","sn-Glycerol 3-phosphate lithium salt"],["mapped/Sn-glycerol_3-phosphate_Bis_Cyclohexylammonium_Salt.yaml","sn-Glycerol 3-phosphate bis(cyclohexylammonium) salt"],["mapped/Sodium_2-bromoethanesulfonate.yaml","Sodium 2-bromoethanesulfonate"],["mapped/Sodium_Adipate.yaml","Sodium adipate"],["mapped/Sodium_Antimonate.yaml","Sodium antimonate"],["mapped/Sodium_Carbonate_Monohydrate.yaml","sodium carbonate monohydrate"],["mapped/Sodium_Cholate_Hydrate.yaml","Sodium cholate hydrate"],["mapped/Sodium_D-Lactate.yaml","Sodium D-Lactate"],["mapped/Sodium_Deoxycholate_Monohydrate.yaml","Sodium deoxycholate monohydrate"],["mapped/Sodium_Ethyl_Sulfate.yaml","Sodium ethyl sulfate"],["mapped/Sodium_Hypophosphite_Monohydrate.yaml","Sodium hypophosphite monohydrate"],["mapped/Sodium_Isethionate.yaml","sodium isethionate"],["mapped/Sodium_Methanesulfonate.yaml","Sodium methanesulfonate"],["mapped/Sodium_Perchlorate_Monohydrate.yaml","Sodium perchlorate monohydrate"],["mapped/Sodium_Persulfate.yaml","Sodium Persulfate"],["mapped/Sodium_Phosphite_Dibasic_Pentahydrate.yaml","Sodium phosphite dibasic pentahydrate"],["mapped/Sodium_Pyrophosphate_Dibasic.yaml","Sodium pyrophosphate dibasic"],["mapped/Sodium_Succinate_Dibasic.yaml","Sodium succinate dibasic"],["mapped/Sodium_Thiophosphate_Tribasic_Hydrate.yaml","Sodium thiophosphate tribasic hydrate"],["mapped/Soya_Peptone.yaml","Soya peptone"],["mapped/Sparassol.yaml","Sparassol"],["mapped/Spiramycin.yaml","Spiramycin"],["mapped/Stachyose_Hydrate.yaml","Stachyose hydrate"],["mapped/Sucrose-6-monophosphate_Dipotassium_Salt.yaml","Sucrose-6-monophosphate dipotassium salt"],["mapped/Sulfamethazine_Sodium_Salt.yaml","Sulfamethazine sodium salt"],["mapped/Sulfaquinoxaline.yaml","Sulfaquinoxaline"],["mapped/Sulfaquinoxaline_Sodium_Salt.yaml","Sulfaquinoxaline sodium salt"],["mapped/Sulfur-free_DL_Minerals.yaml","Sulfur-free DL minerals"],["mapped/Sunflower_Oil.yaml","Sunflower oil"],["mapped/Sutezolid.yaml","Sutezolid"],["mapped/Synephrine_Tartrate.yaml","Synephrine Tartrate"],["mapped/TAPS_Sodium_Salt.yaml","TAPS sodium salt"],["mapped/Tapso.yaml","TAPSO"],["mapped/Tara_Gum.yaml","Tara gum"],["mapped/Terpene_Hydrate.yaml","Terpene hydrate"],["mapped/Tetrakis_Hydroxymethylphosphonium_Sulfate.yaml","Tetrakis(hydroxymethyl)phosphonium sulfate"],["mapped/Theaflavin_Digallate.yaml","Theaflavin Digallate"],["mapped/Timentin.yaml","Timentin"],["mapped/TitaniumIII_Chloride.yaml","TitaniumIII chloride"],["mapped/Tobramycin_Sulfate_Salt.yaml","Tobramycin sulfate salt"],["mapped/Tomatidine_Hydrochloride.yaml","Tomatidine Hydrochloride"],["mapped/UW_Concentrated_Base.yaml","UW concentrated base"],["mapped/UW_Concentrated_Base_No_Sulfur.yaml","UW concentrated base no sulfur"],["mapped/Uranyl_Acetate.yaml","Uranyl acetate"],["mapped/Uranyl_Acetate_Dihydrate.yaml","Uranyl Acetate Dihydrate"],["mapped/Uridine_5-monophosphate_Disodium_Salt.yaml","Uridine 5-monophosphate disodium salt"],["mapped/Ursololactone_Acetate.yaml","Ursololactone Acetate"],["mapped/Vanadium_Chloride.yaml","vanadium chloride"],["mapped/Vancomycin_Hydrochloride_Hydrate.yaml","Vancomycin Hydrochloride Hydrate"],["mapped/Veratrine_Hydrochloride.yaml","Veratrine hydrochloride"],["mapped/Xanthan_From_Xanthomonas_Campestris.yaml","Xanthan from Xanthomonas campestris"],["mapped/Xyloglucan_From_Tamarind.yaml","Xyloglucan from tamarind"],["mapped/Zymosan.yaml","Zymosan"],["mapped/%CE%911-Acid_Glycoprotein_From_Bovine_Plasma.yaml","α1-Acid Glycoprotein from bovine plasma"]]} \ No newline at end of file diff --git a/assets/fleet/cells/MediaIngredientMech--CHEBI.json b/assets/fleet/cells/MediaIngredientMech--CHEBI.json index fae8164..a2eaad2 100644 --- a/assets/fleet/cells/MediaIngredientMech--CHEBI.json +++ b/assets/fleet/cells/MediaIngredientMech--CHEBI.json @@ -1 +1 @@ -{"mech":"MediaIngredientMech","prefix":"CHEBI","base":"https://github.com/CultureBotAI/MediaIngredientMech/blob/main/data/ingredients/","total":2231,"records":[["mapped/%28-%29-anisomycin.yaml","(-)-anisomycin"],["mapped/%28-%29-quinic_Acid.yaml","(-)-quinic Acid"],["mapped/%282%29-D-lyxose.yaml","D-lyxose"],["mapped/%28R%29-amygdalin.yaml","(R)-amygdalin"],["mapped/%28R%29-lactate.yaml","(R)-lactate"],["mapped/%28R%29-malic_Acid.yaml","(R)-malic Acid"],["mapped/%28S%29-azetidine-2-carboxylic_Acid.yaml","(S)-azetidine-2-carboxylic Acid"],["mapped/%28S%29-mandelic_Acid.yaml","(S)-mandelic Acid"],["mapped/02_Thiamine_Pyrophosphate.yaml","0.2% Thiamine pyrophosphate"],["mapped/05_M_Nitrilotriacetic_Acid_Disodium_Salt.yaml","0.5 M Nitrilotriacetic acid, disodium salt"],["mapped/1-Kestose.yaml","1-Kestose"],["mapped/1-Pentanol.yaml","1-Pentanol"],["mapped/1-aminocyclopropane-1-carboxylate.yaml","1-aminocyclopropane-1-carboxylate"],["mapped/1-butanolCO2.yaml","1-butanol+CO2"],["mapped/1-chlorobutane.yaml","1-chlorobutane"],["mapped/1-chloropropane.yaml","1-chloropropane"],["mapped/1-ethyl-3-methylimidazolium_Acetate.yaml","1-ethyl-3-methylimidazolium acetate"],["mapped/1-ethyl-3-methylimidazolium_Chloride.yaml","1-ethyl-3-methylimidazolium chloride"],["mapped/1-ethyl-3-methylimidazolium_Lysine.yaml","1-ethyl-3-methylimidazolium lysine"],["mapped/1-methylphenanthrene.yaml","1-methylphenanthrene"],["mapped/1-naphtylacetic_Acid.yaml","1-Naphthylacetic acid"],["mapped/1-o-methyl_Alpha-galactopyranoside.yaml","1-o-methyl Alpha-galactopyranoside"],["mapped/1-octen-3-ol.yaml","1-octen-3-ol"],["mapped/1-phenazinecarboxamide.yaml","1-phenazinecarboxamide"],["mapped/1-propanolCO2.yaml","1-propanol+CO2"],["mapped/11-Biphenyl-2-ol.yaml","[1,1′-Biphenyl]-2-ol"],["mapped/112-trichloroethane.yaml","1,1,2-Trichloroethane"],["mapped/1122-Tetrachloroethane.yaml","1,1,2,2-Tetrachloroethane"],["mapped/12-Propanediol.yaml","1,2-Propanediol"],["mapped/12-dichloropropane.yaml","1,2-Dichloropropane"],["mapped/13-Butandiol.yaml","1,3-Butanediol"],["mapped/13-Propanediol.yaml","1,3-Propanediol"],["mapped/14-B-D-Galactobiose.yaml","1,4-B-D-Galactobiose"],["mapped/14-Butanediol.yaml","1,4-Butanediol"],["mapped/14-naphthoquinone.yaml","1,4-Naphthoquinone"],["mapped/15-Pentanediol.yaml","1,5-Pentanediol"],["mapped/18-Crown-6.yaml","18-Crown-6"],["mapped/2-Acetylpyrrole.yaml","2-Acetylpyrrole"],["mapped/2-Aminoethylphosphonate.yaml","2-Aminoethylphosphonate"],["mapped/2-Azetidinone.yaml","2-Azetidinone"],["mapped/2-Chlorobenzoic_acid.yaml","2-Chlorobenzoic acid"],["mapped/2-Deoxy-D-Ribose.yaml","2-Deoxy-D-Ribose"],["mapped/2-Deoxy-D-glucose.yaml","2-Deoxy-D-glucose"],["mapped/2-Deoxy-D-ribonic_Acid_Lithium_Salt.yaml","2-Deoxy-D-ribonic acid lithium salt"],["mapped/2-Deoxyadenosine_5-monophosphate.yaml","2-Deoxyadenosine 5-monophosphate"],["mapped/2-Deoxyadenosine_Monohydrate.yaml","2-Deoxyadenosine monohydrate"],["mapped/2-Deoxycytidine.yaml","2'-Deoxycytidine"],["mapped/2-Deoxycytidine_5-monophosphate.yaml","2-Deoxycytidine 5-monophosphate"],["mapped/2-Ethylhexanol.yaml","2-Ethylhexanol"],["mapped/2-Furfuraldehyde.yaml","2-Furfuraldehyde"],["mapped/2-Hydroxy-34-Dimethoxybenzoic_Acid.yaml","2-Hydroxy-3,4-Dimethoxybenzoic Acid"],["mapped/2-Hydroxybutyric_Acid_Sodium_Salt.yaml","2-Hydroxybutyric acid sodium salt"],["mapped/2-Hydroxypyridine.yaml","2-Hydroxypyridine"],["mapped/2-Keto-D-gluconic_Acid_Hemicalcium_Salt_Hydrate.yaml","2-Keto-D-gluconic acid hemicalcium salt hydrate"],["mapped/2-Keto-D-gluconic_Acid_Hemicalcium_Salt_Monohydrate.yaml","2-Keto-D-gluconic acid hemicalcium salt monohydrate"],["mapped/2-Mercaptopyridine_N-oxide_Sodium_Salt.yaml","2-Mercaptopyridine N-oxide sodium salt"],["mapped/2-Nitrophenol.yaml","2-Nitrophenol"],["mapped/2-Piperidinone.yaml","2-Piperidinone"],["mapped/2-_Methylthioethanol.yaml","2-(Methylthio)ethanol"],["mapped/2-aminobenzoate.yaml","2-aminobenzoate"],["mapped/2-aminopentanoic_Acid.yaml","2-aminopentanoic Acid"],["mapped/2-bromo-2-nitro-13-propanediol.yaml","2-bromo-2-nitro-1,3-propanediol"],["mapped/2-butanolCO2.yaml","2-butanol+CO2"],["mapped/2-chloro-4ethylamino-6-isopropylamino-135-triazine.yaml","2-chloro-4ethylamino-6-isopropylamino-1,3,5-triazine"],["mapped/2-dehydro-D-gluconate.yaml","2-dehydro-D-gluconate"],["mapped/2-deoxyadenosine.yaml","2-deoxyadenosine"],["mapped/2-deoxyinosine.yaml","2'-Deoxyinosine"],["mapped/2-deoxyuridine.yaml","2'-Deoxyuridine"],["mapped/2-dichloroethane.yaml","1,2-dichloroethane"],["mapped/2-dimethylsuccinic_Acid.yaml","2-dimethylsuccinic Acid"],["mapped/2-fucosyllactose.yaml","2'-fucosyllactose"],["mapped/2-furoic_Acid.yaml","2-Furoic acid"],["mapped/2-hydroxybutyrate.yaml","2-hydroxybutyrate"],["mapped/2-mercaptoethanesulfonate.yaml","2-Mercaptoethanesulfonate"],["mapped/2-mercaptoethanol.yaml","2-Mercaptoethanol"],["mapped/2-methyl-1-butanol.yaml","2-methyl-1-butanol"],["mapped/2-methyl-4-isothizaolin-3-one.yaml","2-methyl-4-isothizaolin-3-one"],["mapped/2-n-Heptyl-4-hydroxyquinoline_N-oxide.yaml","2-n-Heptyl-4-hydroxyquinoline N-oxide"],["mapped/2-naphthyl_Dihydrogen_Phosphate.yaml","2-naphthyl Dihydrogen Phosphate"],["mapped/2-naphthyl_Tetradecanoate.yaml","2-naphthyl Tetradecanoate"],["mapped/2-oxobutanoate.yaml","2-oxobutanoate"],["mapped/2-oxobutyric_Acid_Sodium_Salt.yaml","2-oxobutyric acid sodium salt"],["mapped/2-oxopentanoate.yaml","2-oxopentanoate"],["mapped/2-pentyl-furan.yaml","2-pentyl-furan"],["mapped/2-propanolCO2.yaml","2-propanol+CO2"],["mapped/2-undecanol.yaml","2-undecanol"],["mapped/22-Dipyridyl.yaml","2,2'-Dipyridyl"],["mapped/2244688-heptamethylnonane.yaml","2,2,4,4,6,8,8-Heptamethylnonane"],["mapped/23-butanediol.yaml","2,3-butanediol"],["mapped/23-dihydroxybenzoic_Acid.yaml","2,3-dihydroxybenzoic acid"],["mapped/235-Triphenyltetrazolium_Chloride.yaml","2,3,5-Triphenyltetrazolium chloride"],["mapped/24-Dichlorophenoxyacetic_acid.yaml","2,4-Dichlorophenoxyacetic acid"],["mapped/24-Dihydroxybenzoic_acid.yaml","2,4-Dihydroxybenzoic acid"],["mapped/24-Dinitrophenol.yaml","2,4-Dinitrophenol"],["mapped/24-diamino-67-di-iso-propylpteridine_phosphate.yaml","2,4-diamino-6,7-di-iso-propylpteridine phosphate"],["mapped/3-Aminophenol.yaml","3-Aminophenol"],["mapped/3-Aminopropionitrile_Fumarate.yaml","3-Aminopropionitrile Fumarate"],["mapped/3-Chloro-4-hydroxyphenylacetic_acid.yaml","3-Chloro-4-hydroxyphenylacetic acid"],["mapped/3-Chloro-L-tyrosine.yaml","3-Chloro-L-tyrosine"],["mapped/3-Chloroacrylic_acid.yaml","3-Chloroacrylic acid"],["mapped/3-Hydroxydecanoic_Acid.yaml","3-Hydroxydecanoic acid"],["mapped/3-Hydroxyhexanoic_Acid.yaml","3-Hydroxyhexanoic acid"],["mapped/3-Hydroxypropanal.yaml","3-Hydroxypropanal"],["mapped/3-Hydroxypropionate.yaml","3-Hydroxypropionate"],["mapped/3-Methyl-2-Oxobutanoic_Acid.yaml","3-Methyl-2-Oxobutanoic Acid"],["mapped/3-Methyl-2-oxobutanoic_Acid_Sodium_Salt.yaml","3-Methyl-2-oxobutanoic acid sodium salt"],["mapped/3-Methylcatechol.yaml","3-Methylcatechol"],["mapped/3-Methylglutaric_Acid.yaml","3-Methylglutaric acid"],["mapped/3-O-methyl-glucose.yaml","3-O-methyl-glucose"],["mapped/3-O-methylgallate.yaml","3-O-methylgallate"],["mapped/3-_N-morpholinopropanesulfonic_Acid.yaml","3-(N-morpholino)propanesulfonic acid"],["mapped/3-acetylpyridine.yaml","3-acetylpyridine"],["mapped/3-aminobenzoate.yaml","3-aminobenzoate"],["mapped/3-aminobutyrate.yaml","3-aminobutyrate"],["mapped/3-aminobutyric_Acid.yaml","3-aminobutyric acid"],["mapped/3-beta-d-glucan.yaml","3-beta-D-glucan"],["mapped/3-dehydro-D-gluconate.yaml","3-dehydro-D-gluconate"],["mapped/3-fucosyllactose.yaml","3'-fucosyllactose"],["mapped/3-hydroxybenzoate.yaml","3-hydroxybenzoate"],["mapped/3-hydroxybenzoic_Acid.yaml","3-Hydroxybenzoic acid"],["mapped/3-hydroxybutyrate.yaml","3-hydroxybutyrate"],["mapped/3-hydroxybutyric_Acid.yaml","3-hydroxybutyric acid"],["mapped/3-indolyl_Acetic_Acid.yaml","3-Indolyl acetic acid"],["mapped/3-methyl-1-butanol.yaml","3-methyl-1-butanol"],["mapped/3-methyl-2-butenol.yaml","3-methyl-2-butenol"],["mapped/3-methyl-2-oxopentanoic_Acid.yaml","3-methyl-2-oxopentanoic acid"],["mapped/3-methyl-3-butenol.yaml","3-methyl-3-butenol"],["mapped/3-nitropropanoate.yaml","3-nitropropanoate"],["mapped/3-octanone.yaml","3-octanone"],["mapped/3-phenylpropionate.yaml","3-phenylpropionate"],["mapped/3-sialyllactose_Sodium_Salt.yaml","3'-sialyllactose sodium salt"],["mapped/3-trehalosamine.yaml","3-trehalosamine"],["mapped/3-trichloropropane.yaml","1,2,3-trichloropropane"],["mapped/34-Dihydroxyphenylacetate.yaml","3,4-Dihydroxyphenylacetate"],["mapped/34-Dimethoxyflavone.yaml","3,4'-Dimethoxyflavone"],["mapped/345-Trimethoxycinnamic_acid.yaml","3,4,5-Trimethoxycinnamic acid"],["mapped/35-Dihydroxybenzoic_acid.yaml","3,5-Dihydroxybenzoic acid"],["mapped/35-Dinitrosalicylic_Acid.yaml","3,5-Dinitrosalicylic acid"],["mapped/36-Dihydroxyflavone.yaml","3',6-Dihydroxyflavone"],["mapped/4-Acetoxy-3-methoxycinnamic_Acid.yaml","4-Acetoxy-3-methoxycinnamic acid"],["mapped/4-Amino-5-hydroxymethyl-2-methylpyrimidine.yaml","4-Amino-5-hydroxymethyl-2-methylpyrimidine"],["mapped/4-Anisaldehyde.yaml","4-Anisaldehyde"],["mapped/4-Cresol.yaml","4-Cresol"],["mapped/4-Deoxypyridoxine.yaml","4-Deoxypyridoxine"],["mapped/4-Hydroxyacetophenone.yaml","4-Hydroxyacetophenone"],["mapped/4-Hydroxybenzaldehyde.yaml","4-Hydroxybenzaldehyde"],["mapped/4-Hydroxymandelic_Acid_Monohydrate.yaml","4-Hydroxymandelic acid monohydrate"],["mapped/4-Hydroxynonanoic_Acid.yaml","4-Hydroxynonanoic acid"],["mapped/4-Hydroxynonenal.yaml","4-Hydroxynonenal"],["mapped/4-Hydroxyphenylpropionic_Acid.yaml","4-Hydroxyphenylpropionic acid"],["mapped/4-Methoxyflavone.yaml","4'-Methoxyflavone"],["mapped/4-Methyl-2-oxopentanoic_Acid_Sodium_Salt.yaml","4-Methyl-2-oxopentanoic acid sodium salt"],["mapped/4-Methyl-2-oxovaleric_Acid.yaml","4-Methyl-2-oxovaleric acid"],["mapped/4-Methylimidazole.yaml","4-Methylimidazole"],["mapped/4-Pyridoxic_Acid.yaml","4-Pyridoxic acid"],["mapped/4-acetoxyphenol.yaml","4-acetoxyphenol"],["mapped/4-aminobenzoate.yaml","4-Aminobenzoate"],["mapped/4-aminobutyrate.yaml","4-aminobutyrate"],["mapped/4-azido-L-phenylalanine.yaml","4-azido-L-phenylalanine"],["mapped/4-benzoyl-L-phenylalanine.yaml","4-benzoyl-L-phenylalanine"],["mapped/4-coumarate.yaml","4-coumarate"],["mapped/4-dihydroxy-biphenyl.yaml","4,4'-dihydroxybiphenyl"],["mapped/4-guanidinobutyric_Acid.yaml","4-Guanidinobutyric acid"],["mapped/4-hydroxy-L-proline.yaml","4-hydroxy-L-proline"],["mapped/4-hydroxybenzoic_Acid.yaml","4-Hydroxybenzoic acid"],["mapped/4-hydroxybutyrate.yaml","4-hydroxybutyrate"],["mapped/4-hydroxybutyric_Acid.yaml","4-hydroxybutyric acid"],["mapped/4-hydroxychalcone.yaml","4-hydroxychalcone"],["mapped/4-hydroxyphenyl_Acetic_Acid.yaml","4-Hydroxyphenyl acetic acid"],["mapped/4-methylumbelliferone_Beta-d-glucuronide.yaml","4-methylumbelliferone Beta-D-glucuronide"],["mapped/4-nitrophenyl_6-O-phosphono-beta-D-galactoside.yaml","4-nitrophenyl 6-O-phosphono-beta-D-galactoside"],["mapped/4-nitrophenyl_Alpha-D-galactoside.yaml","4-nitrophenyl Alpha-D-galactoside"],["mapped/4-nitrophenyl_Alpha-D-glucopyranoside.yaml","4-nitrophenyl Alpha-D-glucopyranoside"],["mapped/4-nitrophenyl_Beta-D-galactopyranoside.yaml","4-nitrophenyl beta-D-galactopyranoside"],["mapped/4-nitrophenyl_Beta-D-glucopyranoside.yaml","4-nitrophenyl Beta-D-glucopyranoside"],["mapped/4-nitrophenyl_Beta-D-glucuronide.yaml","4-nitrophenyl Beta-D-glucuronide"],["mapped/4-nitrophenyl_Beta-D-xylopyranoside.yaml","4-nitrophenyl Beta-D-xylopyranoside"],["mapped/4-nitrophenyl_N-acetyl-beta-D-glucosaminide.yaml","4-nitrophenyl N-acetyl-beta-D-glucosaminide"],["mapped/4-nitrophenyl_Phosphate.yaml","4-nitrophenyl Phosphate"],["mapped/4-oxopentanoate.yaml","4-oxopentanoate"],["mapped/4-vinylphenol.yaml","4-vinylphenol"],["mapped/4_Carbon_Mix.yaml","4 Carbon Mix"],["mapped/4h-pyran-4-one.yaml","4h-pyran-4-one"],["mapped/5-Aminolevulinic_Acid.yaml","5-Aminolevulinic acid"],["mapped/5-Azacytidine.yaml","5-Azacytidine"],["mapped/5-Deoxy-5-fluorocytidine.yaml","5'-Deoxy-5-fluorocytidine"],["mapped/5-Fluorodihydropyrimidine-24-dione.yaml","5-Fluorodihydropyrimidine-2,4-dione"],["mapped/5-Fluoroorotic_Acid_Hydrate.yaml","5-Fluoroorotic acid hydrate"],["mapped/5-Hydroxydodecanoate.yaml","5-Hydroxydodecanoate"],["mapped/5-Hydroxymethylfurfural.yaml","5-Hydroxymethylfurfural"],["mapped/5-Hydroxyoctanoate.yaml","5-Hydroxyoctanoate"],["mapped/5-Keto-D-Gluconic_Acid_Potassium_Salt.yaml","5-Keto-D-Gluconic Acid potassium salt"],["mapped/5-aminovaleric_Acid.yaml","5-Aminovaleric acid"],["mapped/5-dehydro-D-gluconate.yaml","5-dehydro-D-gluconate"],["mapped/5-deoxy-5-_Methylthioadenosine.yaml","5'-Deoxy-5'-(methylthio)adenosine"],["mapped/5-didehydro-D-gluconic_Acid.yaml","2,5-didehydro-D-gluconic acid"],["mapped/5-fluorouracil.yaml","5-fluorouracil"],["mapped/5-methyluridine.yaml","5-methyluridine"],["mapped/5-oxoproline.yaml","5-oxoproline"],["mapped/5-trimethoxybenzoate.yaml","3,4,5-trimethoxybenzoate"],["mapped/6-Hydroxyflavone.yaml","6-Hydroxyflavone"],["mapped/6-O-Acetyl-D-glucose.yaml","6-O-Acetyl-D-glucose"],["mapped/6-O-sialyllactose_Sodium_Salt.yaml","6'-O-sialyllactose sodium salt"],["mapped/6-Pentyl-2H-pyran-2-one.yaml","6-Pentyl-2H-pyran-2-one"],["mapped/6-deoxy-d-galactose.yaml","6-deoxy-D-galactose"],["mapped/6-hydroxypyridine-3-carboxylic_Acid.yaml","6-hydroxypyridine-3-carboxylic acid"],["mapped/6-methoxy-2_3h-benzoxazolone.yaml","6-methoxy-2(3H)-benzoxazolone"],["mapped/7-hydroxyflavone.yaml","7-hydroxyflavone"],["mapped/72-Dihydroxyflavone.yaml","7,2'-Dihydroxyflavone"],["mapped/8-azaguanine.yaml","8-azaguanine"],["mapped/8-hydroxy-nitroquinoline.yaml","8-hydroxy-nitroquinoline"],["mapped/84_GL_NaHCO3_Solution.yaml","84 g/L NaHCO3 solution"],["mapped/A-Cyclodextrin.yaml","a-Cyclodextrin"],["mapped/A-Ketoglutaric_Acid_Disodium_Salt_Hydrate.yaml","a-Ketoglutaric acid disodium salt hydrate"],["mapped/AQDS.yaml","AQDS"],["mapped/ATCC_Wolfes_Mineral_Mix.yaml","ATCC Wolfe's mineral mix"],["mapped/ATCC_Wolfes_Vitamin_Mix.yaml","ATCC Wolfe's vitamin mix"],["mapped/Abietic_Acid.yaml","Abietic Acid"],["mapped/Abikoviromycin.yaml","Abikoviromycin"],["mapped/Abscisic_Acid.yaml","Abscisic acid"],["mapped/Aburamycin_A.yaml","Aburamycin A"],["mapped/Abyssomicin_B.yaml","Abyssomicin B"],["mapped/Abyssomicin_D.yaml","Abyssomicin D"],["mapped/Abyssomicin_G.yaml","Abyssomicin G"],["mapped/Abyssomicin_H.yaml","Abyssomicin H"],["mapped/Acacetin.yaml","Acacetin"],["mapped/Aces.yaml","ACES"],["mapped/Acetaldehyde.yaml","acetaldehyde"],["mapped/Acetamide.yaml","Acetamide"],["mapped/Acetate.yaml","Acetate"],["mapped/Acetate_Carbon_Source.yaml","Acetate (carbon source)"],["mapped/Acetic_Acid.yaml","Acetic acid"],["mapped/Acetoacetate.yaml","Acetoacetate"],["mapped/Acetoin.yaml","Acetoin"],["mapped/Acetomycin.yaml","Acetomycin"],["mapped/Acetone.yaml","acetone"],["mapped/Acetosyringone.yaml","Acetosyringone"],["mapped/Acetovanillone.yaml","Acetovanillone"],["mapped/Acetylated_Xylan.yaml","Acetylated xylan"],["mapped/Acetylene.yaml","Acetylene"],["mapped/Aconitate.yaml","Aconitate"],["mapped/Acridine_Orange.yaml","Acridine orange"],["mapped/Actein.yaml","Actein"],["mapped/Actinomycin_A.yaml","Actinomycin A"],["mapped/Actinomycin_D.yaml","Actinomycin D"],["mapped/Adenine.yaml","Adenine"],["mapped/Adenine_Hydrochloride_Hydrate.yaml","Adenine hydrochloride hydrate"],["mapped/Adenosine.yaml","Adenosine"],["mapped/Adenosine_35-Cyclic_Monophosphate.yaml","Adenosine 3,5-Cyclic Monophosphate"],["mapped/Adenosine_5-monophosphate.yaml","Adenosine 5'-monophosphate"],["mapped/Adipate.yaml","Adipate"],["mapped/Adipic_Acid.yaml","Adipic acid"],["mapped/Agar.yaml","Agar"],["mapped/Agarose.yaml","Agarose"],["mapped/Al2_So43_X_18_H2o.yaml","Al2(SO4)3 x 18 H2O"],["mapped/Alanosine.yaml","alanosine"],["mapped/Alazopeptin.yaml","Alazopeptin"],["mapped/Alcl3.yaml","AlCl3"],["mapped/Alcl3_X_6_H2o.yaml","AlCl3 x 6 H2O"],["mapped/Alginate.yaml","Alginate"],["mapped/Alk_So42.yaml","AlK(SO4)2"],["mapped/Alk_So42_X_12_H2o.yaml","AlK(SO4)2 x 12 H2O"],["mapped/Allantoin.yaml","Allantoin"],["mapped/Allopurinol.yaml","Allopurinol"],["mapped/Allura_Red_AC.yaml","Allura Red AC"],["mapped/Aloin.yaml","Aloin"],["mapped/Alpha-D-glucose_6-phosphate.yaml","Alpha-D-glucose 6-phosphate"],["mapped/Alpha-L-rhamnose.yaml","Alpha-L-rhamnose"],["mapped/Alpha-Lactose.yaml","alpha-Lactose"],["mapped/Alpha-Tocopherol.yaml","alpha-Tocopherol"],["mapped/Alpha-aminobutyrate.yaml","Alpha-aminobutyrate"],["mapped/Alpha-bisabolol.yaml","(-)-alpha-bisabolol"],["mapped/Alpha-d-glucose.yaml","alpha-D-Glucose"],["mapped/Alpha-hydroxyglutarate-gamma-lactone.yaml","Alpha-hydroxyglutarate-gamma-lactone"],["mapped/Alpha-ketoglutaric_Acid.yaml","alpha-ketoglutaric acid"],["mapped/Alpha-toxicarol_Dl.yaml","Alpha-Toxicarol (Dl)"],["mapped/Alphaalpha-Trehalose.yaml","alpha,alpha-Trehalose"],["mapped/Althiomycin.yaml","Althiomycin"],["mapped/Aluminium_Sulfate.yaml","Aluminium sulfate"],["mapped/Amicoumacin_B.yaml","Amicoumacin B"],["mapped/Amikacin.yaml","Amikacin"],["mapped/Amikacin_Disulfate_Salt.yaml","Amikacin disulfate salt"],["mapped/Amino_Acid.yaml","Amino Acid"],["mapped/Aminoglycoside_Antibiotic.yaml","Aminoglycoside Antibiotic"],["mapped/Aminophenazone.yaml","Aminophenazone"],["mapped/Ammonia.yaml","Ammonia"],["mapped/Ammonium.yaml","Ammonium"],["mapped/Ammonium_Acetate.yaml","Ammonium acetate"],["mapped/Ammonium_Chloride_Nitrogen_Source.yaml","Ammonium chloride (nitrogen source)"],["mapped/Ammonium_Molybdate_Tetrahydrate.yaml","ammonium molybdate tetrahydrate"],["mapped/Ammonium_Persulfate.yaml","ammonium persulfate"],["mapped/Ammonium_Sulfamate.yaml","Ammonium Sulfamate"],["mapped/Amoxicillin.yaml","Amoxicillin"],["mapped/Amphomycin.yaml","Amphomycin"],["mapped/Amphotericin_A.yaml","Amphotericin A"],["mapped/Amphotericin_B.yaml","Amphotericin B"],["mapped/Ampicillin.yaml","Ampicillin"],["mapped/Ampicillin_Sodium_Salt.yaml","Ampicillin sodium salt"],["mapped/Amygdalin.yaml","Amygdalin"],["mapped/Amylopectin_From_Maize.yaml","amylopectin from maize"]]} \ No newline at end of file +{"mech":"MediaIngredientMech","prefix":"CHEBI","base":"https://github.com/CultureBotAI/MediaIngredientMech/blob/main/data/ingredients/","total":2226,"records":[["mapped/%28-%29-anisomycin.yaml","(-)-anisomycin"],["mapped/%28-%29-quinic_Acid.yaml","(-)-quinic Acid"],["mapped/%282%29-D-lyxose.yaml","D-lyxose"],["mapped/%28R%29-amygdalin.yaml","(R)-amygdalin"],["mapped/%28R%29-lactate.yaml","(R)-lactate"],["mapped/%28R%29-malic_Acid.yaml","(R)-malic Acid"],["mapped/%28S%29-azetidine-2-carboxylic_Acid.yaml","(S)-azetidine-2-carboxylic Acid"],["mapped/%28S%29-mandelic_Acid.yaml","(S)-mandelic Acid"],["mapped/02_Thiamine_Pyrophosphate.yaml","0.2% Thiamine pyrophosphate"],["mapped/05_M_Nitrilotriacetic_Acid_Disodium_Salt.yaml","0.5 M Nitrilotriacetic acid, disodium salt"],["mapped/1-Kestose.yaml","1-Kestose"],["mapped/1-Pentanol.yaml","1-Pentanol"],["mapped/1-aminocyclopropane-1-carboxylate.yaml","1-aminocyclopropane-1-carboxylate"],["mapped/1-butanolCO2.yaml","1-butanol+CO2"],["mapped/1-chlorobutane.yaml","1-chlorobutane"],["mapped/1-chloropropane.yaml","1-chloropropane"],["mapped/1-ethyl-3-methylimidazolium_Acetate.yaml","1-ethyl-3-methylimidazolium acetate"],["mapped/1-ethyl-3-methylimidazolium_Chloride.yaml","1-ethyl-3-methylimidazolium chloride"],["mapped/1-ethyl-3-methylimidazolium_Lysine.yaml","1-ethyl-3-methylimidazolium lysine"],["mapped/1-methylphenanthrene.yaml","1-methylphenanthrene"],["mapped/1-naphtylacetic_Acid.yaml","1-Naphthylacetic acid"],["mapped/1-o-methyl_Alpha-galactopyranoside.yaml","1-o-methyl Alpha-galactopyranoside"],["mapped/1-octen-3-ol.yaml","1-octen-3-ol"],["mapped/1-phenazinecarboxamide.yaml","1-phenazinecarboxamide"],["mapped/1-propanolCO2.yaml","1-propanol+CO2"],["mapped/11-Biphenyl-2-ol.yaml","[1,1′-Biphenyl]-2-ol"],["mapped/112-trichloroethane.yaml","1,1,2-Trichloroethane"],["mapped/1122-Tetrachloroethane.yaml","1,1,2,2-Tetrachloroethane"],["mapped/12-Propanediol.yaml","1,2-Propanediol"],["mapped/12-dichloropropane.yaml","1,2-Dichloropropane"],["mapped/13-Butandiol.yaml","1,3-Butanediol"],["mapped/13-Propanediol.yaml","1,3-Propanediol"],["mapped/14-B-D-Galactobiose.yaml","1,4-B-D-Galactobiose"],["mapped/14-Butanediol.yaml","1,4-Butanediol"],["mapped/14-naphthoquinone.yaml","1,4-Naphthoquinone"],["mapped/15-Pentanediol.yaml","1,5-Pentanediol"],["mapped/18-Crown-6.yaml","18-Crown-6"],["mapped/2-Acetylpyrrole.yaml","2-Acetylpyrrole"],["mapped/2-Aminoethylphosphonate.yaml","2-Aminoethylphosphonate"],["mapped/2-Azetidinone.yaml","2-Azetidinone"],["mapped/2-Chlorobenzoic_acid.yaml","2-Chlorobenzoic acid"],["mapped/2-Deoxy-D-Ribose.yaml","2-Deoxy-D-Ribose"],["mapped/2-Deoxy-D-glucose.yaml","2-Deoxy-D-glucose"],["mapped/2-Deoxy-D-ribonic_Acid_Lithium_Salt.yaml","2-Deoxy-D-ribonic acid lithium salt"],["mapped/2-Deoxyadenosine_5-monophosphate.yaml","2-Deoxyadenosine 5-monophosphate"],["mapped/2-Deoxyadenosine_Monohydrate.yaml","2-Deoxyadenosine monohydrate"],["mapped/2-Deoxycytidine.yaml","2'-Deoxycytidine"],["mapped/2-Deoxycytidine_5-monophosphate.yaml","2-Deoxycytidine 5-monophosphate"],["mapped/2-Ethylhexanol.yaml","2-Ethylhexanol"],["mapped/2-Furfuraldehyde.yaml","2-Furfuraldehyde"],["mapped/2-Hydroxy-34-Dimethoxybenzoic_Acid.yaml","2-Hydroxy-3,4-Dimethoxybenzoic Acid"],["mapped/2-Hydroxybutyric_Acid_Sodium_Salt.yaml","2-Hydroxybutyric acid sodium salt"],["mapped/2-Hydroxypyridine.yaml","2-Hydroxypyridine"],["mapped/2-Keto-D-gluconic_Acid_Hemicalcium_Salt_Hydrate.yaml","2-Keto-D-gluconic acid hemicalcium salt hydrate"],["mapped/2-Keto-D-gluconic_Acid_Hemicalcium_Salt_Monohydrate.yaml","2-Keto-D-gluconic acid hemicalcium salt monohydrate"],["mapped/2-Mercaptopyridine_N-oxide_Sodium_Salt.yaml","2-Mercaptopyridine N-oxide sodium salt"],["mapped/2-Nitrophenol.yaml","2-Nitrophenol"],["mapped/2-Piperidinone.yaml","2-Piperidinone"],["mapped/2-_Methylthioethanol.yaml","2-(Methylthio)ethanol"],["mapped/2-aminobenzoate.yaml","2-aminobenzoate"],["mapped/2-aminopentanoic_Acid.yaml","2-aminopentanoic Acid"],["mapped/2-bromo-2-nitro-13-propanediol.yaml","2-bromo-2-nitro-1,3-propanediol"],["mapped/2-butanolCO2.yaml","2-butanol+CO2"],["mapped/2-chloro-4ethylamino-6-isopropylamino-135-triazine.yaml","2-chloro-4ethylamino-6-isopropylamino-1,3,5-triazine"],["mapped/2-dehydro-D-gluconate.yaml","2-dehydro-D-gluconate"],["mapped/2-deoxyadenosine.yaml","2-deoxyadenosine"],["mapped/2-deoxyinosine.yaml","2'-Deoxyinosine"],["mapped/2-deoxyuridine.yaml","2'-Deoxyuridine"],["mapped/2-dichloroethane.yaml","1,2-dichloroethane"],["mapped/2-dimethylsuccinic_Acid.yaml","2-dimethylsuccinic Acid"],["mapped/2-fucosyllactose.yaml","2'-fucosyllactose"],["mapped/2-furoic_Acid.yaml","2-Furoic acid"],["mapped/2-hydroxybutyrate.yaml","2-hydroxybutyrate"],["mapped/2-mercaptoethanesulfonate.yaml","2-Mercaptoethanesulfonate"],["mapped/2-mercaptoethanol.yaml","2-Mercaptoethanol"],["mapped/2-methyl-1-butanol.yaml","2-methyl-1-butanol"],["mapped/2-methyl-4-isothizaolin-3-one.yaml","2-methyl-4-isothizaolin-3-one"],["mapped/2-n-Heptyl-4-hydroxyquinoline_N-oxide.yaml","2-n-Heptyl-4-hydroxyquinoline N-oxide"],["mapped/2-naphthyl_Dihydrogen_Phosphate.yaml","2-naphthyl Dihydrogen Phosphate"],["mapped/2-naphthyl_Tetradecanoate.yaml","2-naphthyl Tetradecanoate"],["mapped/2-oxobutanoate.yaml","2-oxobutanoate"],["mapped/2-oxobutyric_Acid_Sodium_Salt.yaml","2-oxobutyric acid sodium salt"],["mapped/2-oxopentanoate.yaml","2-oxopentanoate"],["mapped/2-pentyl-furan.yaml","2-pentyl-furan"],["mapped/2-propanolCO2.yaml","2-propanol+CO2"],["mapped/2-undecanol.yaml","2-undecanol"],["mapped/22-Dipyridyl.yaml","2,2'-Dipyridyl"],["mapped/2244688-heptamethylnonane.yaml","2,2,4,4,6,8,8-Heptamethylnonane"],["mapped/23-butanediol.yaml","2,3-butanediol"],["mapped/23-dihydroxybenzoic_Acid.yaml","2,3-dihydroxybenzoic acid"],["mapped/235-Triphenyltetrazolium_Chloride.yaml","2,3,5-Triphenyltetrazolium chloride"],["mapped/24-Dichlorophenoxyacetic_acid.yaml","2,4-Dichlorophenoxyacetic acid"],["mapped/24-Dihydroxybenzoic_acid.yaml","2,4-Dihydroxybenzoic acid"],["mapped/24-Dinitrophenol.yaml","2,4-Dinitrophenol"],["mapped/24-diamino-67-di-iso-propylpteridine_phosphate.yaml","2,4-diamino-6,7-di-iso-propylpteridine phosphate"],["mapped/3-Aminophenol.yaml","3-Aminophenol"],["mapped/3-Aminopropionitrile_Fumarate.yaml","3-Aminopropionitrile Fumarate"],["mapped/3-Chloro-4-hydroxyphenylacetic_acid.yaml","3-Chloro-4-hydroxyphenylacetic acid"],["mapped/3-Chloro-L-tyrosine.yaml","3-Chloro-L-tyrosine"],["mapped/3-Chloroacrylic_acid.yaml","3-Chloroacrylic acid"],["mapped/3-Hydroxydecanoic_Acid.yaml","3-Hydroxydecanoic acid"],["mapped/3-Hydroxyhexanoic_Acid.yaml","3-Hydroxyhexanoic acid"],["mapped/3-Hydroxypropanal.yaml","3-Hydroxypropanal"],["mapped/3-Hydroxypropionate.yaml","3-Hydroxypropionate"],["mapped/3-Methyl-2-Oxobutanoic_Acid.yaml","3-Methyl-2-Oxobutanoic Acid"],["mapped/3-Methyl-2-oxobutanoic_Acid_Sodium_Salt.yaml","3-Methyl-2-oxobutanoic acid sodium salt"],["mapped/3-Methylcatechol.yaml","3-Methylcatechol"],["mapped/3-Methylglutaric_Acid.yaml","3-Methylglutaric acid"],["mapped/3-O-methyl-glucose.yaml","3-O-methyl-glucose"],["mapped/3-O-methylgallate.yaml","3-O-methylgallate"],["mapped/3-_N-morpholinopropanesulfonic_Acid.yaml","3-(N-morpholino)propanesulfonic acid"],["mapped/3-acetylpyridine.yaml","3-acetylpyridine"],["mapped/3-aminobenzoate.yaml","3-aminobenzoate"],["mapped/3-aminobutyrate.yaml","3-aminobutyrate"],["mapped/3-aminobutyric_Acid.yaml","3-aminobutyric acid"],["mapped/3-beta-d-glucan.yaml","3-beta-D-glucan"],["mapped/3-dehydro-D-gluconate.yaml","3-dehydro-D-gluconate"],["mapped/3-fucosyllactose.yaml","3'-fucosyllactose"],["mapped/3-hydroxybenzoate.yaml","3-hydroxybenzoate"],["mapped/3-hydroxybenzoic_Acid.yaml","3-Hydroxybenzoic acid"],["mapped/3-hydroxybutyrate.yaml","3-hydroxybutyrate"],["mapped/3-hydroxybutyric_Acid.yaml","3-hydroxybutyric acid"],["mapped/3-indolyl_Acetic_Acid.yaml","3-Indolyl acetic acid"],["mapped/3-methyl-1-butanol.yaml","3-methyl-1-butanol"],["mapped/3-methyl-2-butenol.yaml","3-methyl-2-butenol"],["mapped/3-methyl-2-oxopentanoic_Acid.yaml","3-methyl-2-oxopentanoic acid"],["mapped/3-methyl-3-butenol.yaml","3-methyl-3-butenol"],["mapped/3-nitropropanoate.yaml","3-nitropropanoate"],["mapped/3-octanone.yaml","3-octanone"],["mapped/3-phenylpropionate.yaml","3-phenylpropionate"],["mapped/3-sialyllactose_Sodium_Salt.yaml","3'-sialyllactose sodium salt"],["mapped/3-trehalosamine.yaml","3-trehalosamine"],["mapped/3-trichloropropane.yaml","1,2,3-trichloropropane"],["mapped/34-Dihydroxyphenylacetate.yaml","3,4-Dihydroxyphenylacetate"],["mapped/34-Dimethoxyflavone.yaml","3,4'-Dimethoxyflavone"],["mapped/345-Trimethoxycinnamic_acid.yaml","3,4,5-Trimethoxycinnamic acid"],["mapped/35-Dihydroxybenzoic_acid.yaml","3,5-Dihydroxybenzoic acid"],["mapped/35-Dinitrosalicylic_Acid.yaml","3,5-Dinitrosalicylic acid"],["mapped/36-Dihydroxyflavone.yaml","3',6-Dihydroxyflavone"],["mapped/4-Acetoxy-3-methoxycinnamic_Acid.yaml","4-Acetoxy-3-methoxycinnamic acid"],["mapped/4-Amino-5-hydroxymethyl-2-methylpyrimidine.yaml","4-Amino-5-hydroxymethyl-2-methylpyrimidine"],["mapped/4-Anisaldehyde.yaml","4-Anisaldehyde"],["mapped/4-Cresol.yaml","4-Cresol"],["mapped/4-Deoxypyridoxine.yaml","4-Deoxypyridoxine"],["mapped/4-Hydroxyacetophenone.yaml","4-Hydroxyacetophenone"],["mapped/4-Hydroxybenzaldehyde.yaml","4-Hydroxybenzaldehyde"],["mapped/4-Hydroxymandelic_Acid_Monohydrate.yaml","4-Hydroxymandelic acid monohydrate"],["mapped/4-Hydroxynonanoic_Acid.yaml","4-Hydroxynonanoic acid"],["mapped/4-Hydroxynonenal.yaml","4-Hydroxynonenal"],["mapped/4-Hydroxyphenylpropionic_Acid.yaml","4-Hydroxyphenylpropionic acid"],["mapped/4-Methoxyflavone.yaml","4'-Methoxyflavone"],["mapped/4-Methyl-2-oxopentanoic_Acid_Sodium_Salt.yaml","4-Methyl-2-oxopentanoic acid sodium salt"],["mapped/4-Methyl-2-oxovaleric_Acid.yaml","4-Methyl-2-oxovaleric acid"],["mapped/4-Methylimidazole.yaml","4-Methylimidazole"],["mapped/4-Pyridoxic_Acid.yaml","4-Pyridoxic acid"],["mapped/4-acetoxyphenol.yaml","4-acetoxyphenol"],["mapped/4-aminobenzoate.yaml","4-Aminobenzoate"],["mapped/4-aminobutyrate.yaml","4-aminobutyrate"],["mapped/4-azido-L-phenylalanine.yaml","4-azido-L-phenylalanine"],["mapped/4-benzoyl-L-phenylalanine.yaml","4-benzoyl-L-phenylalanine"],["mapped/4-coumarate.yaml","4-coumarate"],["mapped/4-dihydroxy-biphenyl.yaml","4,4'-dihydroxybiphenyl"],["mapped/4-guanidinobutyric_Acid.yaml","4-Guanidinobutyric acid"],["mapped/4-hydroxy-L-proline.yaml","4-hydroxy-L-proline"],["mapped/4-hydroxybenzoic_Acid.yaml","4-Hydroxybenzoic acid"],["mapped/4-hydroxybutyrate.yaml","4-hydroxybutyrate"],["mapped/4-hydroxybutyric_Acid.yaml","4-hydroxybutyric acid"],["mapped/4-hydroxychalcone.yaml","4-hydroxychalcone"],["mapped/4-hydroxyphenyl_Acetic_Acid.yaml","4-Hydroxyphenyl acetic acid"],["mapped/4-methylumbelliferone_Beta-d-glucuronide.yaml","4-methylumbelliferone Beta-D-glucuronide"],["mapped/4-nitrophenyl_6-O-phosphono-beta-D-galactoside.yaml","4-nitrophenyl 6-O-phosphono-beta-D-galactoside"],["mapped/4-nitrophenyl_Alpha-D-galactoside.yaml","4-nitrophenyl Alpha-D-galactoside"],["mapped/4-nitrophenyl_Alpha-D-glucopyranoside.yaml","4-nitrophenyl Alpha-D-glucopyranoside"],["mapped/4-nitrophenyl_Beta-D-galactopyranoside.yaml","4-nitrophenyl beta-D-galactopyranoside"],["mapped/4-nitrophenyl_Beta-D-glucopyranoside.yaml","4-nitrophenyl Beta-D-glucopyranoside"],["mapped/4-nitrophenyl_Beta-D-glucuronide.yaml","4-nitrophenyl Beta-D-glucuronide"],["mapped/4-nitrophenyl_Beta-D-xylopyranoside.yaml","4-nitrophenyl Beta-D-xylopyranoside"],["mapped/4-nitrophenyl_N-acetyl-beta-D-glucosaminide.yaml","4-nitrophenyl N-acetyl-beta-D-glucosaminide"],["mapped/4-nitrophenyl_Phosphate.yaml","4-nitrophenyl Phosphate"],["mapped/4-oxopentanoate.yaml","4-oxopentanoate"],["mapped/4-vinylphenol.yaml","4-vinylphenol"],["mapped/4_Carbon_Mix.yaml","4 Carbon Mix"],["mapped/4h-pyran-4-one.yaml","4h-pyran-4-one"],["mapped/5-Aminolevulinic_Acid.yaml","5-Aminolevulinic acid"],["mapped/5-Azacytidine.yaml","5-Azacytidine"],["mapped/5-Deoxy-5-fluorocytidine.yaml","5'-Deoxy-5-fluorocytidine"],["mapped/5-Fluorodihydropyrimidine-24-dione.yaml","5-Fluorodihydropyrimidine-2,4-dione"],["mapped/5-Fluoroorotic_Acid_Hydrate.yaml","5-Fluoroorotic acid hydrate"],["mapped/5-Hydroxydodecanoate.yaml","5-Hydroxydodecanoate"],["mapped/5-Hydroxymethylfurfural.yaml","5-Hydroxymethylfurfural"],["mapped/5-Hydroxyoctanoate.yaml","5-Hydroxyoctanoate"],["mapped/5-Keto-D-Gluconic_Acid_Potassium_Salt.yaml","5-Keto-D-Gluconic Acid potassium salt"],["mapped/5-aminovaleric_Acid.yaml","5-Aminovaleric acid"],["mapped/5-dehydro-D-gluconate.yaml","5-dehydro-D-gluconate"],["mapped/5-deoxy-5-_Methylthioadenosine.yaml","5'-Deoxy-5'-(methylthio)adenosine"],["mapped/5-didehydro-D-gluconic_Acid.yaml","2,5-didehydro-D-gluconic acid"],["mapped/5-fluorouracil.yaml","5-fluorouracil"],["mapped/5-methyluridine.yaml","5-methyluridine"],["mapped/5-oxoproline.yaml","5-oxoproline"],["mapped/5-trimethoxybenzoate.yaml","3,4,5-trimethoxybenzoate"],["mapped/6-Hydroxyflavone.yaml","6-Hydroxyflavone"],["mapped/6-O-Acetyl-D-glucose.yaml","6-O-Acetyl-D-glucose"],["mapped/6-O-sialyllactose_Sodium_Salt.yaml","6'-O-sialyllactose sodium salt"],["mapped/6-Pentyl-2H-pyran-2-one.yaml","6-Pentyl-2H-pyran-2-one"],["mapped/6-deoxy-d-galactose.yaml","6-deoxy-D-galactose"],["mapped/6-hydroxypyridine-3-carboxylic_Acid.yaml","6-hydroxypyridine-3-carboxylic acid"],["mapped/6-methoxy-2_3h-benzoxazolone.yaml","6-methoxy-2(3H)-benzoxazolone"],["mapped/7-hydroxyflavone.yaml","7-hydroxyflavone"],["mapped/72-Dihydroxyflavone.yaml","7,2'-Dihydroxyflavone"],["mapped/8-azaguanine.yaml","8-azaguanine"],["mapped/8-hydroxy-nitroquinoline.yaml","8-hydroxy-nitroquinoline"],["mapped/84_GL_NaHCO3_Solution.yaml","84 g/L NaHCO3 solution"],["mapped/A-Cyclodextrin.yaml","a-Cyclodextrin"],["mapped/A-Ketoglutaric_Acid_Disodium_Salt_Hydrate.yaml","a-Ketoglutaric acid disodium salt hydrate"],["mapped/AQDS.yaml","AQDS"],["mapped/ATCC_Wolfes_Mineral_Mix.yaml","ATCC Wolfe's mineral mix"],["mapped/ATCC_Wolfes_Vitamin_Mix.yaml","ATCC Wolfe's vitamin mix"],["mapped/Abietic_Acid.yaml","Abietic Acid"],["mapped/Abikoviromycin.yaml","Abikoviromycin"],["mapped/Abscisic_Acid.yaml","Abscisic acid"],["mapped/Aburamycin_A.yaml","Aburamycin A"],["mapped/Abyssomicin_B.yaml","Abyssomicin B"],["mapped/Abyssomicin_D.yaml","Abyssomicin D"],["mapped/Abyssomicin_G.yaml","Abyssomicin G"],["mapped/Abyssomicin_H.yaml","Abyssomicin H"],["mapped/Acacetin.yaml","Acacetin"],["mapped/Aces.yaml","ACES"],["mapped/Acetaldehyde.yaml","acetaldehyde"],["mapped/Acetamide.yaml","Acetamide"],["mapped/Acetate.yaml","Acetate"],["mapped/Acetate_Carbon_Source.yaml","Acetate (carbon source)"],["mapped/Acetic_Acid.yaml","Acetic acid"],["mapped/Acetoacetate.yaml","Acetoacetate"],["mapped/Acetoin.yaml","Acetoin"],["mapped/Acetomycin.yaml","Acetomycin"],["mapped/Acetone.yaml","acetone"],["mapped/Acetosyringone.yaml","Acetosyringone"],["mapped/Acetovanillone.yaml","Acetovanillone"],["mapped/Acetylated_Xylan.yaml","Acetylated xylan"],["mapped/Acetylene.yaml","Acetylene"],["mapped/Aconitate.yaml","Aconitate"],["mapped/Acridine_Orange.yaml","Acridine orange"],["mapped/Actein.yaml","Actein"],["mapped/Actinomycin_A.yaml","Actinomycin A"],["mapped/Actinomycin_D.yaml","Actinomycin D"],["mapped/Adenine.yaml","Adenine"],["mapped/Adenine_Hydrochloride_Hydrate.yaml","Adenine hydrochloride hydrate"],["mapped/Adenosine.yaml","Adenosine"],["mapped/Adenosine_35-Cyclic_Monophosphate.yaml","Adenosine 3,5-Cyclic Monophosphate"],["mapped/Adenosine_5-monophosphate.yaml","Adenosine 5'-monophosphate"],["mapped/Adipate.yaml","Adipate"],["mapped/Adipic_Acid.yaml","Adipic acid"],["mapped/Agar.yaml","Agar"],["mapped/Agarose.yaml","Agarose"],["mapped/Al2_So43_X_18_H2o.yaml","Al2(SO4)3 x 18 H2O"],["mapped/Alanosine.yaml","alanosine"],["mapped/Alazopeptin.yaml","Alazopeptin"],["mapped/Alcl3.yaml","AlCl3"],["mapped/Alcl3_X_6_H2o.yaml","AlCl3 x 6 H2O"],["mapped/Alginate.yaml","Alginate"],["mapped/Alk_So42.yaml","AlK(SO4)2"],["mapped/Alk_So42_X_12_H2o.yaml","AlK(SO4)2 x 12 H2O"],["mapped/Allantoin.yaml","Allantoin"],["mapped/Allopurinol.yaml","Allopurinol"],["mapped/Allura_Red_AC.yaml","Allura Red AC"],["mapped/Aloin.yaml","Aloin"],["mapped/Alpha-D-glucose_6-phosphate.yaml","Alpha-D-glucose 6-phosphate"],["mapped/Alpha-L-rhamnose.yaml","Alpha-L-rhamnose"],["mapped/Alpha-Lactose.yaml","alpha-Lactose"],["mapped/Alpha-Tocopherol.yaml","alpha-Tocopherol"],["mapped/Alpha-aminobutyrate.yaml","Alpha-aminobutyrate"],["mapped/Alpha-bisabolol.yaml","(-)-alpha-bisabolol"],["mapped/Alpha-d-glucose.yaml","alpha-D-Glucose"],["mapped/Alpha-hydroxyglutarate-gamma-lactone.yaml","Alpha-hydroxyglutarate-gamma-lactone"],["mapped/Alpha-ketoglutaric_Acid.yaml","alpha-ketoglutaric acid"],["mapped/Alpha-toxicarol_Dl.yaml","Alpha-Toxicarol (Dl)"],["mapped/Alphaalpha-Trehalose.yaml","alpha,alpha-Trehalose"],["mapped/Althiomycin.yaml","Althiomycin"],["mapped/Aluminium_Sulfate.yaml","Aluminium sulfate"],["mapped/Amicoumacin_B.yaml","Amicoumacin B"],["mapped/Amikacin.yaml","Amikacin"],["mapped/Amikacin_Disulfate_Salt.yaml","Amikacin disulfate salt"],["mapped/Amino_Acid.yaml","Amino Acid"],["mapped/Aminoglycoside_Antibiotic.yaml","Aminoglycoside Antibiotic"],["mapped/Aminophenazone.yaml","Aminophenazone"],["mapped/Ammonia.yaml","Ammonia"],["mapped/Ammonium.yaml","Ammonium"],["mapped/Ammonium_Acetate.yaml","Ammonium acetate"],["mapped/Ammonium_Chloride_Nitrogen_Source.yaml","Ammonium chloride (nitrogen source)"],["mapped/Ammonium_Molybdate_Tetrahydrate.yaml","ammonium molybdate tetrahydrate"],["mapped/Ammonium_Persulfate.yaml","ammonium persulfate"],["mapped/Ammonium_Sulfamate.yaml","Ammonium Sulfamate"],["mapped/Amoxicillin.yaml","Amoxicillin"],["mapped/Amphomycin.yaml","Amphomycin"],["mapped/Amphotericin_A.yaml","Amphotericin A"],["mapped/Amphotericin_B.yaml","Amphotericin B"],["mapped/Ampicillin.yaml","Ampicillin"],["mapped/Ampicillin_Sodium_Salt.yaml","Ampicillin sodium salt"],["mapped/Amygdalin.yaml","Amygdalin"],["mapped/Amylopectin_From_Maize.yaml","amylopectin from maize"]]} \ No newline at end of file diff --git a/assets/fleet/cells/ProteinTraitsMech--NCBITaxon.json b/assets/fleet/cells/ProteinTraitsMech--NCBITaxon.json index 47f8d1e..b43f3ea 100644 --- a/assets/fleet/cells/ProteinTraitsMech--NCBITaxon.json +++ b/assets/fleet/cells/ProteinTraitsMech--NCBITaxon.json @@ -1 +1 @@ -{"mech":"ProteinTraitsMech","prefix":"NCBITaxon","base":"https://culturebotai.github.io/proteintraitsmech/browse.html#record=","total":98697,"records":[["EC%3A1.1.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.1.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.1.98.-","With other, known, acceptors"],["EC%3A1.1.99.-","With other acceptors"],["EC%3A1.1.-.-","Acting on the CH-OH group of donors"],["EC%3A1.10.3.-","With oxygen as acceptor"],["EC%3A1.11.1.-","Peroxidases"],["EC%3A1.11.2.-","With H2O2 as acceptor, one oxygen atom of which is incorporated into the product"],["EC%3A1.12.99.-","With other acceptors"],["EC%3A1.13.11.-","With incorporation of two atoms of oxygen"],["EC%3A1.13.12.-","With incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)"],["EC%3A1.14.11.-","With 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors"],["EC%3A1.14.13.-","With NADH or NADPH as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.14.-","With reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.15.-","With reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.17.-","With reduced ascorbate as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.18.-","With another compound as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.19.-","With oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water"],["EC%3A1.14.99.-","Miscellaneous"],["EC%3A1.14.-.-","Acting on paired donors, with incorporation or reduction of molecular oxygen. The oxygen incorporated need not be derived from O2"],["EC%3A1.16.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.16.-.-","Oxidizing metal ions"],["EC%3A1.17.4.-","With a disulfide as acceptor"],["EC%3A1.17.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.18.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.2.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.2.4.-","With a disulfide as acceptor"],["EC%3A1.2.7.-","With an iron-sulfur protein as acceptor"],["EC%3A1.21.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.21.98.-","With other, known acceptors"],["EC%3A1.23.1.-","With NADH or NADPH as donor"],["EC%3A1.3.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.3.3.-","With oxygen as acceptor"],["EC%3A1.3.99.-","With other acceptors"],["EC%3A1.3.-.-","Acting on the CH-CH group of donors"],["EC%3A1.4.3.-","With oxygen as acceptor"],["EC%3A1.4.99.-","With other acceptors"],["EC%3A1.5.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.5.3.-","With oxygen as acceptor"],["EC%3A1.5.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.6.3.-","With oxygen as acceptor"],["EC%3A1.6.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.6.99.-","With other acceptors"],["EC%3A1.6.-.-","Acting on NADH or NADPH"],["EC%3A1.7.2.-","With a cytochrome as acceptor"],["EC%3A1.7.-.-","Acting on other nitrogenous compounds as donors"],["EC%3A1.8.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.8.4.-","With a disulfide as acceptor"],["EC%3A1.8.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.8.98.-","With other, known, acceptors"],["EC%3A1.8.99.-","With other acceptors"],["EC%3A1.8.-.-","Acting on a sulfur group of donors"],["EC%3A1.97.1.-","Other oxidoreductases"],["EC%3A1.-.-.-","Oxidoreductases"],["EC%3A2.1.1.-","Methyltransferases"],["EC%3A2.1.2.-","Hydroxymethyl-, formyl- and related transferases"],["EC%3A2.1.3.-","Carboxy- and carbamoyltransferases"],["EC%3A2.1.-.-","Transferring one-carbon groups"],["EC%3A2.3.1.-","Transferring groups other than amino-acyl groups"],["EC%3A2.3.2.-","Aminoacyltransferases"],["EC%3A2.3.3.-","Acyl groups converted into alkyl groups on transfer"],["EC%3A2.3.-.-","Acyltransferases"],["EC%3A2.4.1.-","Hexosyltransferases"],["EC%3A2.4.2.-","Pentosyltransferases"],["EC%3A2.4.3.-","Sialyltransferases"],["EC%3A2.4.99.-","Transferring other glycosyl groups"],["EC%3A2.4.-.-","Glycosyltransferases"],["EC%3A2.5.1.-","Transferring alkyl or aryl groups, other than methyl groups"],["EC%3A2.6.1.-","Transaminases"],["EC%3A2.6.-.-","Transferring nitrogenous groups"],["EC%3A2.7.1.-","Phosphotransferases with an alcohol group as acceptor"],["EC%3A2.7.10.-","Protein-tyrosine kinases"],["EC%3A2.7.11.-","Protein-serine/threonine kinases"],["EC%3A2.7.2.-","Phosphotransferases with a carboxy group as acceptor"],["EC%3A2.7.4.-","Phosphotransferases with a phosphate group as acceptor"],["EC%3A2.7.6.-","Diphosphotransferases"],["EC%3A2.7.7.-","Nucleotidyltransferases"],["EC%3A2.7.8.-","Transferases for other substituted phosphate groups"],["EC%3A2.7.-.-","Transferring phosphorus-containing groups"],["EC%3A2.8.1.-","Sulfurtransferases"],["EC%3A2.8.2.-","Sulfotransferases"],["EC%3A2.8.3.-","CoA-transferases"],["EC%3A2.-.-.-","Transferases"],["EC%3A3.1.1.-","Carboxylic ester hydrolases"],["EC%3A3.1.11.-","Exodeoxyribonucleases producing 5'-phosphomonoesters"],["EC%3A3.1.13.-","Exoribonucleases producing 5'-phosphomonoesters"],["EC%3A3.1.15.-","Exonucleases active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters"],["EC%3A3.1.2.-","Thiolester hydrolases"],["EC%3A3.1.21.-","Endodeoxyribonucleases producing 5'-phosphomonoesters"],["EC%3A3.1.22.-","Endodeoxyribonucleases producing other than 5'-phosphomonoesters"],["EC%3A3.1.24.-","Site specific endodeoxyribonucleases: cleavage is not sequence specific"],["EC%3A3.1.25.-","Site-specific endodeoxyribonucleases specific for altered bases"],["EC%3A3.1.26.-","Endoribonucleases producing 5'-phosphomonoesters"],["EC%3A3.1.27.-","Endoribonucleases producing other than 5'-phosphomonoesters"],["EC%3A3.1.3.-","Phosphoric monoester hydrolases"],["EC%3A3.1.30.-","Endoribonucleases active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters"],["EC%3A3.1.31.-","Endoribonucleases active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters"],["EC%3A3.1.4.-","Phosphoric diester hydrolases"],["EC%3A3.1.5.-","Triphosphoric monoester hydrolases"],["EC%3A3.1.6.-","Sulfuric ester hydrolases"],["EC%3A3.1.-.-","Acting on ester bonds"],["EC%3A3.2.1.-","Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds"],["EC%3A3.2.2.-","Hydrolyzing N-glycosyl compounds"],["EC%3A3.2.-.-","Glycosylases"],["EC%3A3.3.-.-","Acting on ether bonds"],["EC%3A3.4.11.-","Aminopeptidases"],["EC%3A3.4.13.-","Dipeptidases"],["EC%3A3.4.14.-","Dipeptidyl-peptidases and tripeptidyl-peptidases"],["EC%3A3.4.16.-","Serine-type carboxypeptidases"],["EC%3A3.4.17.-","Metallocarboxypeptidases"],["EC%3A3.4.19.-","Omega peptidases"],["EC%3A3.4.21.-","Serine endopeptidases"],["EC%3A3.4.22.-","Cysteine endopeptidases"],["EC%3A3.4.23.-","Aspartic endopeptidases"],["EC%3A3.4.24.-","Metalloendopeptidases"],["EC%3A3.4.25.-","Threonine endopeptidases"],["EC%3A3.4.-.-","Acting on peptide bonds (peptidases)"],["EC%3A3.5.1.-","In linear amides"],["EC%3A3.5.2.-","In cyclic amides"],["EC%3A3.5.3.-","In linear amidines"],["EC%3A3.5.4.-","In cyclic amidines"],["EC%3A3.5.99.-","In other compounds"],["EC%3A3.5.-.-","Acting on carbon-nitrogen bonds, other than peptide bonds"],["EC%3A3.6.1.-","In phosphorus-containing anhydrides"],["EC%3A3.6.3.-","Acting on acid anhydrides; catalyzing transmembrane movement of substances"],["EC%3A3.6.4.-","Acting on ATP; involved in cellular and subcellular movement"],["EC%3A3.6.5.-","Acting on GTP; involved in cellular and subcellular movement"],["EC%3A3.6.-.-","Acting on acid anhydrides"],["EC%3A3.9.1.-","Acting on phosphorus-nitrogen bonds"],["EC%3A3.-.-.-","Hydrolases"],["EC%3A4.1.1.-","Carboxy-lyases"],["EC%3A4.1.2.-","Aldehyde-lyases"],["EC%3A4.1.3.-","Oxo-acid-lyases"],["EC%3A4.1.-.-","Carbon-carbon lyases"],["EC%3A4.2.1.-","Hydro-lyases"],["EC%3A4.2.2.-","Acting on polysaccharides"],["EC%3A4.2.3.-","Acting on phosphates"],["EC%3A4.2.99.-","Other carbon-oxygen lyases"],["EC%3A4.2.-.-","Carbon-oxygen lyases"],["EC%3A4.4.1.-","Carbon-sulfur lyases"],["EC%3A4.6.1.-","Phosphorus-oxygen lyases"],["EC%3A4.-.-.-","Lyases"],["EC%3A5.1.3.-","Acting on carbohydrates and derivatives"],["EC%3A5.1.-.-","Racemases and epimerases"],["EC%3A5.3.1.-","Interconverting aldoses and ketoses"],["EC%3A5.3.2.-","Interconverting keto- and enol-groups"],["EC%3A5.3.3.-","Transposing C=C bonds"],["EC%3A5.4.2.-","Phosphotransferases (phosphomutases)"],["EC%3A5.4.3.-","Transferring amino groups"],["EC%3A5.4.99.-","Transferring other groups"],["EC%3A5.4.-.-","Intramolecular transferases"],["EC%3A5.6.2.-","Enzymes altering nucleic acid conformation"],["EC%3A5.99.-.-","Other isomerases"],["EC%3A5.-.-.-","Isomerases"],["EC%3A6.1.1.-","Ligases forming aminoacyl-tRNA and related compounds"],["EC%3A6.1.-.-","Forming carbon-oxygen bonds"],["EC%3A6.2.1.-","Acid--thiol ligases"],["EC%3A6.2.-.-","Forming carbon-sulfur bonds"],["EC%3A6.3.1.-","Acid--ammonia (or amine) ligases (amide synthases)"],["EC%3A6.3.2.-","Acid--amino-acid ligases (peptide synthases)"],["EC%3A6.3.4.-","Other carbon--nitrogen ligases"],["EC%3A6.3.5.-","Carbon--nitrogen ligases with glutamine as amido-N-donor"],["EC%3A6.4.1.-","Forming carbon-carbon bonds"],["EC%3A6.5.1.-","Forming phosphoric ester bonds"],["EC%3A6.-.-.-","Ligases"],["EC%3A7.1.1.-","Hydron translocation or charge separation linked to oxidoreductase reactions"],["EC%3A7.2.1.-","Linked to oxidoreductase reactions"],["EC%3A7.2.2.-","Linked to the hydrolysis of a nucleoside triphosphate"],["EC%3A7.4.2.-","Linked to the hydrolysis of a nucleoside triphosphate"],["EC%3A7.5.2.-","Linked to the hydrolysis of a nucleoside triphosphate"],["EC%3A7.6.2.-","Linked to the hydrolysis of a nucleoside triphosphate"],["EC%3A7.6.-.-","Catalysing the translocation of other compounds"],["EC%3A7.-.-.-","Translocases"],["GO%3A0000148","1,3-beta-D-glucan synthase complex"],["GO%3A0008247","1-alkyl-2-acetylglycerophosphocholine esterase complex"],["GO%3A0120513","2-(3-amino-3-carboxypropyl)histidine synthase complex"],["GO%3A1902508","2-iminoacetate synthase complex"],["GO%3A0005729","2-micrometer circle DNA"],["GO%3A0009316","3-isopropylmalate dehydratase complex"],["GO%3A1990393","3M complex"],["GO%3A0032144","4-aminobutyrate transaminase complex"],["GO%3A0043540","6-phosphofructo-2-kinase/fructose-2,6-biphosphatase complex"],["GO%3A0005945","6-phosphofructokinase complex"],["GO%3A0120259","7SK snRNP"],["GO%3A0097728","9+0 motile cilium"],["GO%3A0097731","9+0 non-motile cilium"],["GO%3A0097729","9+2 motile cilium"],["GO%3A0030686","90S preribosome"],["GO%3A0031672","A band"],["GO%3A0009329","acetate CoA-transferase complex"],["GO%3A0005948","acetolactate synthase complex"],["GO%3A0009317","acetyl-CoA carboxylase complex"],["GO%3A0005892","acetylcholine-gated channel complex"],["GO%3A0016590","ACF complex"],["GO%3A1904097","acid phosphatase complex"],["GO%3A0036063","acroblast"],["GO%3A0043160","acrosomal lumen"],["GO%3A0043159","acrosomal matrix"],["GO%3A0002080","acrosomal membrane"],["GO%3A0001669","acrosomal vesicle"],["GO%3A0098858","actin-based cell projection"],["GO%3A0030478","actin cap"],["GO%3A0030479","actin cortical patch"],["GO%3A0015629","actin cytoskeleton"],["GO%3A1990964","actin cytoskeleton-regulatory complex"],["GO%3A0061834","actin filament branch point"],["GO%3A0032432","actin filament bundle"],["GO%3A0005884","actin filament"],["GO%3A0008232","activator ecdysone receptor complex"],["GO%3A0043509","activin A complex"],["GO%3A0048179","activin receptor complex"],["GO%3A0032444","activin responsive factor complex"],["GO%3A1903144","actomyosin contractile ring actin filament"],["GO%3A0005826","actomyosin contractile ring"],["GO%3A0042641","actomyosin"],["GO%3A0042642","actomyosin, myosin complex part"],["GO%3A0061576","acyl-CoA ceramide synthase complex"],["GO%3A0140671","ADA complex"],["GO%3A1902503","adenylyltransferase complex"],["GO%3A0005912","adherens junction"],["GO%3A1903143","adrenomedullin receptor complex"],["GO%3A0016235","aggresome"],["GO%3A0097169","AIM2 inflammasome complex"],["GO%3A0110131","Aim21-Tda2 complex"],["GO%3A1990597","AIP1-IRE1 complex"],["GO%3A0060111","alae of collagen and cuticulin-based cuticle extracellular matrix"],["GO%3A1990201","alkanesulfonate monooxygenase complex"],["GO%3A0009321","alkyl hydroperoxide reductase complex"],["GO%3A0005946","alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)"],["GO%3A0042105","alpha-beta T cell receptor complex"],["GO%3A0061694","alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase complex"],["GO%3A0005658","alpha DNA polymerase:primase complex"],["GO%3A0005723","alpha-heterochromatin"],["GO%3A0071133","alpha9-beta1 integrin-ADAM8 complex"],["GO%3A0071065","alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex"],["GO%3A0035868","alphav-beta3 integrin-HMGB1 complex"],["GO%3A0035867","alphav-beta3 integrin-IGF-1-IGF1R complex"],["GO%3A0035866","alphav-beta3 integrin-PKCalpha complex"],["GO%3A0071062","alphav-beta3 integrin-vitronectin complex"],["GO%3A0097208","alveolar lamellar body"],["GO%3A0097233","alveolar lamellar body membrane"],["GO%3A1990184","amino acid transport complex"],["GO%3A0017101","aminoacyl-tRNA synthetase multienzyme complex"],["GO%3A0009356","aminodeoxychorismate synthase complex"],["GO%3A0032281","AMPA glutamate receptor complex"],["GO%3A0044753","amphisome"],["GO%3A1904930","amphisome membrane"],["GO%3A0150056","amylin receptor complex 1"],["GO%3A0150057","amylin receptor complex 2"],["GO%3A0150058","amylin receptor complex 3"],["GO%3A0106003","amyloid-beta complex"],["GO%3A0009501","amyloplast"],["GO%3A0033097","amyloplast membrane"],["GO%3A0031250","anaerobic ribonucleoside-triphosphate reductase complex"],["GO%3A0005680","anaphase-promoting complex"],["GO%3A0070161","anchoring junction"],["GO%3A0032311","angiogenin-PRI complex"],["GO%3A0170014","ankyrin-1 complex"],["GO%3A0060108","annular furrow extracellular matrix"],["GO%3A0005642","annulate lamellae"],["GO%3A0060107","annuli extracellular matrix"],["GO%3A0061802","anterior cell cortex"],["GO%3A0005950","anthranilate synthase complex"],["GO%3A1990665","AnxA2-p11 complex"],["GO%3A0030121","AP-1 adaptor complex"],["GO%3A0030122","AP-2 adaptor complex"],["GO%3A0030123","AP-3 adaptor complex"],["GO%3A0030124","AP-4 adaptor complex"],["GO%3A0044599","AP-5 adaptor complex"],["GO%3A0030119","AP-type membrane coat adaptor complex"],["GO%3A0020007","apical complex"],["GO%3A0045179","apical cortex"],["GO%3A0090651","apical cytoplasm"],["GO%3A0097440","apical dendrite"],["GO%3A0150014","apical distal dendrite"],["GO%3A0061831","apical ectoplasmic specialization"],["GO%3A0043296","apical junction complex"],["GO%3A0045177","apical part of cell"],["GO%3A0016324","apical plasma membrane"],["GO%3A0120001","apical plasma membrane urothelial plaque"],["GO%3A0044225","apical pole of neuron"],["GO%3A0061828","apical tubulobulbar complex"],["GO%3A0016327","apicolateral plasma membrane"],["GO%3A0106037","apicomedial cortex"],["GO%3A0020026","apicomplexan dense granule"],["GO%3A0020011","apicoplast"],["GO%3A0030895","apolipoprotein B mRNA editing enzyme complex"],["GO%3A0048046","apoplast"],["GO%3A0043293","apoptosome"],["GO%3A0097589","archaeal-type flagellum"],["GO%3A0005885","Arp2/3 protein complex"],["GO%3A0034751","aryl hydrocarbon receptor complex"],["GO%3A0061574","ASAP complex"],["GO%3A0042764","ascospore-type prospore"],["GO%3A0005619","ascospore wall"],["GO%3A0005633","ascus lipid droplet"],["GO%3A0097658","Asi complex"],["GO%3A0009347","aspartate carbamoyltransferase complex"],["GO%3A0005818","aster"],["GO%3A0000235","astral microtubule"]]} \ No newline at end of file +{"mech":"ProteinTraitsMech","prefix":"NCBITaxon","base":"https://culturebotai.github.io/proteintraitsmech/browse.html#record=","total":111963,"records":[["EC%3A1.1.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.1.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.1.98.-","With other, known, acceptors"],["EC%3A1.1.99.-","With other acceptors"],["EC%3A1.1.-.-","Acting on the CH-OH group of donors"],["EC%3A1.10.3.-","With oxygen as acceptor"],["EC%3A1.11.1.-","Peroxidases"],["EC%3A1.11.2.-","With H2O2 as acceptor, one oxygen atom of which is incorporated into the product"],["EC%3A1.12.99.-","With other acceptors"],["EC%3A1.13.11.-","With incorporation of two atoms of oxygen"],["EC%3A1.13.12.-","With incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)"],["EC%3A1.14.11.-","With 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors"],["EC%3A1.14.13.-","With NADH or NADPH as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.14.-","With reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.15.-","With reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.17.-","With reduced ascorbate as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.18.-","With another compound as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.19.-","With oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water"],["EC%3A1.14.99.-","Miscellaneous"],["EC%3A1.14.-.-","Acting on paired donors, with incorporation or reduction of molecular oxygen. The oxygen incorporated need not be derived from O2"],["EC%3A1.16.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.16.-.-","Oxidizing metal ions"],["EC%3A1.17.4.-","With a disulfide as acceptor"],["EC%3A1.17.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.18.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.2.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.2.4.-","With a disulfide as acceptor"],["EC%3A1.2.7.-","With an iron-sulfur protein as acceptor"],["EC%3A1.21.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.21.98.-","With other, known acceptors"],["EC%3A1.23.1.-","With NADH or NADPH as donor"],["EC%3A1.3.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.3.3.-","With oxygen as acceptor"],["EC%3A1.3.99.-","With other acceptors"],["EC%3A1.3.-.-","Acting on the CH-CH group of donors"],["EC%3A1.4.3.-","With oxygen as acceptor"],["EC%3A1.4.99.-","With other acceptors"],["EC%3A1.5.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.5.3.-","With oxygen as acceptor"],["EC%3A1.5.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.6.3.-","With oxygen as acceptor"],["EC%3A1.6.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.6.99.-","With other acceptors"],["EC%3A1.6.-.-","Acting on NADH or NADPH"],["EC%3A1.7.2.-","With a cytochrome as acceptor"],["EC%3A1.7.-.-","Acting on other nitrogenous compounds as donors"],["EC%3A1.8.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.8.4.-","With a disulfide as acceptor"],["EC%3A1.8.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.8.98.-","With other, known, acceptors"],["EC%3A1.8.99.-","With other acceptors"],["EC%3A1.8.-.-","Acting on a sulfur group of donors"],["EC%3A1.97.1.-","Other oxidoreductases"],["EC%3A1.-.-.-","Oxidoreductases"],["EC%3A2.1.1.-","Methyltransferases"],["EC%3A2.1.2.-","Hydroxymethyl-, formyl- and related transferases"],["EC%3A2.1.3.-","Carboxy- and carbamoyltransferases"],["EC%3A2.1.-.-","Transferring one-carbon groups"],["EC%3A2.3.1.-","Transferring groups other than amino-acyl groups"],["EC%3A2.3.2.-","Aminoacyltransferases"],["EC%3A2.3.3.-","Acyl groups converted into alkyl groups on transfer"],["EC%3A2.3.-.-","Acyltransferases"],["EC%3A2.4.1.-","Hexosyltransferases"],["EC%3A2.4.2.-","Pentosyltransferases"],["EC%3A2.4.3.-","Sialyltransferases"],["EC%3A2.4.99.-","Transferring other glycosyl groups"],["EC%3A2.4.-.-","Glycosyltransferases"],["EC%3A2.5.1.-","Transferring alkyl or aryl groups, other than methyl groups"],["EC%3A2.6.1.-","Transaminases"],["EC%3A2.6.-.-","Transferring nitrogenous groups"],["EC%3A2.7.1.-","Phosphotransferases with an alcohol group as acceptor"],["EC%3A2.7.10.-","Protein-tyrosine kinases"],["EC%3A2.7.11.-","Protein-serine/threonine kinases"],["EC%3A2.7.2.-","Phosphotransferases with a carboxy group as acceptor"],["EC%3A2.7.4.-","Phosphotransferases with a phosphate group as acceptor"],["EC%3A2.7.6.-","Diphosphotransferases"],["EC%3A2.7.7.-","Nucleotidyltransferases"],["EC%3A2.7.8.-","Transferases for other substituted phosphate groups"],["EC%3A2.7.-.-","Transferring phosphorus-containing groups"],["EC%3A2.8.1.-","Sulfurtransferases"],["EC%3A2.8.2.-","Sulfotransferases"],["EC%3A2.8.3.-","CoA-transferases"],["EC%3A2.-.-.-","Transferases"],["EC%3A3.1.1.-","Carboxylic ester hydrolases"],["EC%3A3.1.11.-","Exodeoxyribonucleases producing 5'-phosphomonoesters"],["EC%3A3.1.13.-","Exoribonucleases producing 5'-phosphomonoesters"],["EC%3A3.1.15.-","Exonucleases active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters"],["EC%3A3.1.2.-","Thiolester hydrolases"],["EC%3A3.1.21.-","Endodeoxyribonucleases producing 5'-phosphomonoesters"],["EC%3A3.1.22.-","Endodeoxyribonucleases producing other than 5'-phosphomonoesters"],["EC%3A3.1.24.-","Site specific endodeoxyribonucleases: cleavage is not sequence specific"],["EC%3A3.1.25.-","Site-specific endodeoxyribonucleases specific for altered bases"],["EC%3A3.1.26.-","Endoribonucleases producing 5'-phosphomonoesters"],["EC%3A3.1.27.-","Endoribonucleases producing other than 5'-phosphomonoesters"],["EC%3A3.1.3.-","Phosphoric monoester hydrolases"],["EC%3A3.1.30.-","Endoribonucleases active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters"],["EC%3A3.1.31.-","Endoribonucleases active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters"],["EC%3A3.1.4.-","Phosphoric diester hydrolases"],["EC%3A3.1.5.-","Triphosphoric monoester hydrolases"],["EC%3A3.1.6.-","Sulfuric ester hydrolases"],["EC%3A3.1.-.-","Acting on ester bonds"],["EC%3A3.2.1.-","Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds"],["EC%3A3.2.2.-","Hydrolyzing N-glycosyl compounds"],["EC%3A3.2.-.-","Glycosylases"],["EC%3A3.3.-.-","Acting on ether bonds"],["EC%3A3.4.11.-","Aminopeptidases"],["EC%3A3.4.13.-","Dipeptidases"],["EC%3A3.4.14.-","Dipeptidyl-peptidases and tripeptidyl-peptidases"],["EC%3A3.4.16.-","Serine-type carboxypeptidases"],["EC%3A3.4.17.-","Metallocarboxypeptidases"],["EC%3A3.4.19.-","Omega peptidases"],["EC%3A3.4.21.-","Serine endopeptidases"],["EC%3A3.4.22.-","Cysteine endopeptidases"],["EC%3A3.4.23.-","Aspartic endopeptidases"],["EC%3A3.4.24.-","Metalloendopeptidases"],["EC%3A3.4.25.-","Threonine endopeptidases"],["EC%3A3.4.-.-","Acting on peptide bonds (peptidases)"],["EC%3A3.5.1.-","In linear amides"],["EC%3A3.5.2.-","In cyclic amides"],["EC%3A3.5.3.-","In linear amidines"],["EC%3A3.5.4.-","In cyclic amidines"],["EC%3A3.5.99.-","In other compounds"],["EC%3A3.5.-.-","Acting on carbon-nitrogen bonds, other than peptide bonds"],["EC%3A3.6.1.-","In phosphorus-containing anhydrides"],["EC%3A3.6.3.-","Acting on acid anhydrides; catalyzing transmembrane movement of substances"],["EC%3A3.6.4.-","Acting on ATP; involved in cellular and subcellular movement"],["EC%3A3.6.5.-","Acting on GTP; involved in cellular and subcellular movement"],["EC%3A3.6.-.-","Acting on acid anhydrides"],["EC%3A3.9.1.-","Acting on phosphorus-nitrogen bonds"],["EC%3A3.-.-.-","Hydrolases"],["EC%3A4.1.1.-","Carboxy-lyases"],["EC%3A4.1.2.-","Aldehyde-lyases"],["EC%3A4.1.3.-","Oxo-acid-lyases"],["EC%3A4.1.-.-","Carbon-carbon lyases"],["EC%3A4.2.1.-","Hydro-lyases"],["EC%3A4.2.2.-","Acting on polysaccharides"],["EC%3A4.2.3.-","Acting on phosphates"],["EC%3A4.2.99.-","Other carbon-oxygen lyases"],["EC%3A4.2.-.-","Carbon-oxygen lyases"],["EC%3A4.4.1.-","Carbon-sulfur lyases"],["EC%3A4.6.1.-","Phosphorus-oxygen lyases"],["EC%3A4.-.-.-","Lyases"],["EC%3A5.1.3.-","Acting on carbohydrates and derivatives"],["EC%3A5.1.-.-","Racemases and epimerases"],["EC%3A5.3.1.-","Interconverting aldoses and ketoses"],["EC%3A5.3.2.-","Interconverting keto- and enol-groups"],["EC%3A5.3.3.-","Transposing C=C bonds"],["EC%3A5.4.2.-","Phosphotransferases (phosphomutases)"],["EC%3A5.4.3.-","Transferring amino groups"],["EC%3A5.4.99.-","Transferring other groups"],["EC%3A5.4.-.-","Intramolecular transferases"],["EC%3A5.6.2.-","Enzymes altering nucleic acid conformation"],["EC%3A5.99.-.-","Other isomerases"],["EC%3A5.-.-.-","Isomerases"],["EC%3A6.1.1.-","Ligases forming aminoacyl-tRNA and related compounds"],["EC%3A6.1.-.-","Forming carbon-oxygen bonds"],["EC%3A6.2.1.-","Acid--thiol ligases"],["EC%3A6.2.-.-","Forming carbon-sulfur bonds"],["EC%3A6.3.1.-","Acid--ammonia (or amine) ligases (amide synthases)"],["EC%3A6.3.2.-","Acid--amino-acid ligases (peptide synthases)"],["EC%3A6.3.4.-","Other carbon--nitrogen ligases"],["EC%3A6.3.5.-","Carbon--nitrogen ligases with glutamine as amido-N-donor"],["EC%3A6.4.1.-","Forming carbon-carbon bonds"],["EC%3A6.5.1.-","Forming phosphoric ester bonds"],["EC%3A6.-.-.-","Ligases"],["EC%3A7.1.1.-","Hydron translocation or charge separation linked to oxidoreductase reactions"],["EC%3A7.2.1.-","Linked to oxidoreductase reactions"],["EC%3A7.2.2.-","Linked to the hydrolysis of a nucleoside triphosphate"],["EC%3A7.4.2.-","Linked to the hydrolysis of a nucleoside triphosphate"],["EC%3A7.5.2.-","Linked to the hydrolysis of a nucleoside triphosphate"],["EC%3A7.6.2.-","Linked to the hydrolysis of a nucleoside triphosphate"],["EC%3A7.6.-.-","Catalysing the translocation of other compounds"],["EC%3A7.-.-.-","Translocases"],["GO%3A0000148","1,3-beta-D-glucan synthase complex"],["GO%3A0008247","1-alkyl-2-acetylglycerophosphocholine esterase complex"],["GO%3A0120513","2-(3-amino-3-carboxypropyl)histidine synthase complex"],["GO%3A1902508","2-iminoacetate synthase complex"],["GO%3A0005729","2-micrometer circle DNA"],["GO%3A0009316","3-isopropylmalate dehydratase complex"],["GO%3A1990393","3M complex"],["GO%3A0032144","4-aminobutyrate transaminase complex"],["GO%3A0043540","6-phosphofructo-2-kinase/fructose-2,6-biphosphatase complex"],["GO%3A0005945","6-phosphofructokinase complex"],["GO%3A0120259","7SK snRNP"],["GO%3A0097728","9+0 motile cilium"],["GO%3A0097731","9+0 non-motile cilium"],["GO%3A0097729","9+2 motile cilium"],["GO%3A0030686","90S preribosome"],["GO%3A0031672","A band"],["GO%3A0009329","acetate CoA-transferase complex"],["GO%3A0005948","acetolactate synthase complex"],["GO%3A0009317","acetyl-CoA carboxylase complex"],["GO%3A0005892","acetylcholine-gated channel complex"],["GO%3A0016590","ACF complex"],["GO%3A1904097","acid phosphatase complex"],["GO%3A0036063","acroblast"],["GO%3A0043160","acrosomal lumen"],["GO%3A0043159","acrosomal matrix"],["GO%3A0002080","acrosomal membrane"],["GO%3A0001669","acrosomal vesicle"],["GO%3A0098858","actin-based cell projection"],["GO%3A0030478","actin cap"],["GO%3A0030479","actin cortical patch"],["GO%3A0015629","actin cytoskeleton"],["GO%3A1990964","actin cytoskeleton-regulatory complex"],["GO%3A0061834","actin filament branch point"],["GO%3A0032432","actin filament bundle"],["GO%3A0005884","actin filament"],["GO%3A0008232","activator ecdysone receptor complex"],["GO%3A0043509","activin A complex"],["GO%3A0048179","activin receptor complex"],["GO%3A0032444","activin responsive factor complex"],["GO%3A1903144","actomyosin contractile ring actin filament"],["GO%3A0005826","actomyosin contractile ring"],["GO%3A0042641","actomyosin"],["GO%3A0042642","actomyosin, myosin complex part"],["GO%3A0061576","acyl-CoA ceramide synthase complex"],["GO%3A0140671","ADA complex"],["GO%3A1902503","adenylyltransferase complex"],["GO%3A0005912","adherens junction"],["GO%3A1903143","adrenomedullin receptor complex"],["GO%3A0016235","aggresome"],["GO%3A0097169","AIM2 inflammasome complex"],["GO%3A0110131","Aim21-Tda2 complex"],["GO%3A1990597","AIP1-IRE1 complex"],["GO%3A0060111","alae of collagen and cuticulin-based cuticle extracellular matrix"],["GO%3A1990201","alkanesulfonate monooxygenase complex"],["GO%3A0009321","alkyl hydroperoxide reductase complex"],["GO%3A0005946","alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)"],["GO%3A0042105","alpha-beta T cell receptor complex"],["GO%3A0061694","alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase complex"],["GO%3A0005658","alpha DNA polymerase:primase complex"],["GO%3A0005723","alpha-heterochromatin"],["GO%3A0071133","alpha9-beta1 integrin-ADAM8 complex"],["GO%3A0071065","alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex"],["GO%3A0035868","alphav-beta3 integrin-HMGB1 complex"],["GO%3A0035867","alphav-beta3 integrin-IGF-1-IGF1R complex"],["GO%3A0035866","alphav-beta3 integrin-PKCalpha complex"],["GO%3A0071062","alphav-beta3 integrin-vitronectin complex"],["GO%3A0097208","alveolar lamellar body"],["GO%3A0097233","alveolar lamellar body membrane"],["GO%3A1990184","amino acid transport complex"],["GO%3A0017101","aminoacyl-tRNA synthetase multienzyme complex"],["GO%3A0009356","aminodeoxychorismate synthase complex"],["GO%3A0032281","AMPA glutamate 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oxidase"]]},{"id":"UniProt:P07363","l":"","na":1,"nb":32,"a":[["other/methyl_accepting_chemotaxis_protein_complex.html","methyl accepting chemotaxis protein complex"]],"b":[["ComplexPortal%3ACPX-1077","Chemotaxis phosphorelay complex CheA-CheY"],["GO%3A0098561","methyl accepting chemotaxis protein complex"],["GO%3A0004673","protein histidine kinase activity"],["GO%3A0009454","aerotaxis"],["GO%3A0071977","bacterial-type flagellum-dependent swimming motility"],["GO%3A0051649","establishment of localization in cell"]]},{"id":"GO:0004298","l":"threonine-type endopeptidase activity","na":1,"nb":30,"a":[["other/proteasome_core_complex.html","proteasome core complex"]],"b":[["ComplexPortal%3ACPX-9082","19S-20S-PA28-alphabeta hybrid proteasome complex"],["ComplexPortal%3ACPX-9085","19S-20S-PA28-gamma hybrid proteasome complex"],["ComplexPortal%3ACPX-9021","20S spermatoproteasome complex"],["ComplexPortal%3ACPX-9004","20S thymoproteasome complex"],["ComplexPortal%3ACPX-2262","26S proteasome 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variant"]]},{"id":"Pfam:PF00015","l":"Methyl-accepting chemotaxis protein (MCP) signalling domain","na":1,"nb":28,"a":[["other/methyl_accepting_chemotaxis_protein_complex.html","methyl accepting chemotaxis protein complex"]],"b":[["GO%3A0009454","aerotaxis"],["CDD%3Acd01068","globin_sensor"],["CDD%3Acd19411","MCP2201-like_sensor"],["CDD%3Acd11386","MCP_signal"],["InterPro%3AIPR007891","CHASE3"],["InterPro%3AIPR024478","Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain"]]},{"id":"GO:0005770","l":"late endosome","na":1,"nb":27,"a":[["membrane_organelle/multivesicular_body.html","multivesicular body"]],"b":[["ComplexPortal%3ACPX-5181","AP-5 Adaptor complex"],["ComplexPortal%3ACPX-5182","AP-5 Adaptor complex"],["ComplexPortal%3ACPX-20045","AP5-Spastizin-spatacsin complex"],["ComplexPortal%3ACPX-3233","GSE complex"],["ComplexPortal%3ACPX-8153","MON1-CCZ1 guanyl-nucleotide exchange factor complex, MON1A variant"],["ComplexPortal%3ACPX-8152","MON1-CCZ1 guanyl-nucleotide exchange factor complex, MON1B variant"]]},{"id":"GO:0015627","l":"type II protein secretion system complex","na":1,"nb":26,"a":[["secretion_system/type_ii_protein_secretion_system_complex.html","type II protein secretion system complex"]],"b":[["GO%3A0015627","type II protein secretion system complex"],["NCBIfam%3ATIGR02533","type II secretion system ATPase GspE"],["NCBIfam%3ATIGR02120","type II secretion system inner membrane protein GspF"],["NCBIfam%3ATIGR01710","type II secretion system major pseudopilin GspG"],["NCBIfam%3ATIGR01708","type II secretion system minor pseudopilin GspH"],["NCBIfam%3ATIGR01707","type II secretion system minor pseudopilin GspI"]]},{"id":"GO:0005885","l":"Arp2/3 protein complex","na":1,"nb":25,"a":[["cytoskeleton/actin_cortical_patch.html","actin cortical patch"]],"b":[["ComplexPortal%3ACPX-2586","Actin-related protein 2/3 complex, ARPC1A-ACTR3-ARPC5 variant"],["ComplexPortal%3ACPX-2592","Actin-related protein 2/3 complex, ARPC1A-ACTR3-ARPC5L variant"],["ComplexPortal%3ACPX-2490","Actin-related protein 2/3 complex, ARPC1A-ACTR3B-ARPC5 variant"],["ComplexPortal%3ACPX-2579","Actin-related protein 2/3 complex, ARPC1B-ACTR3-ARPC5 variant"],["ComplexPortal%3ACPX-2663","Actin-related protein 2/3 complex, ARPC1B-ACTR3-ARPC5L variant"],["ComplexPortal%3ACPX-2583","Actin-related protein 2/3 complex, ARPC1B-ACTR3B-ARPC5 variant"]]},{"id":"GO:0005618","l":"cell wall","na":1,"nb":24,"a":[["envelope/fungal_type_cell_wall.html","fungal-type cell wall"]],"b":[["GO%3A0005618","cell wall"],["GO%3A0097570","cyst wall"],["GO%3A0009277","fungal-type cell wall"],["GO%3A0009274","peptidoglycan-based cell wall"],["GO%3A0009505","plant-type cell wall"],["GO%3A0031160","spore wall"]]},{"id":"GO:0031968","l":"organelle outer membrane","na":1,"nb":24,"a":[["membrane_organelle/mitochondrial_outer_membrane.html","mitochondrial outer membrane"]],"b":[["GO%3A0009535","chloroplast thylakoid membrane"],["GO%3A0005741","mitochondrial outer 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Li(+)(out) + Ca(2+)(in) = 3 Li(+)(in) + Ca(2+)(out)"],["RHEA%3A55884","[aequorin] + 3 Ca(2+) = [aequorin]--dioxetanone"],["RHEA%3A55888","[aequorin]--dioxetanone = excited state-[aequorin] + CO2"]]},{"id":"GO:0030658","l":"transport vesicle membrane","na":1,"nb":20,"a":[["membrane_organelle/er_to_golgi_transport_vesicle_membrane.html","ER to Golgi transport vesicle membrane"]],"b":[["GO%3A0060201","clathrin-sculpted acetylcholine transport vesicle membrane"],["GO%3A0060203","clathrin-sculpted glutamate transport vesicle membrane"],["GO%3A0070083","clathrin-sculpted monoamine transport vesicle membrane"],["GO%3A0012507","ER to Golgi transport vesicle membrane"],["GO%3A0099501","exocytic vesicle membrane"],["GO%3A0012508","Golgi to ER transport vesicle membrane"]]},{"id":"NCBITaxon:1422","l":"Geobacillus stearothermophilus","na":1,"nb":20,"a":[["envelope/s_layer.html","S-layer"]],"b":[["Pfam%3APF09154","Alpha-amylase C-terminal"],["Pfam%3APF27529","AMPT"],["Pfam%3APF24856","L-arabinose isomerase central domain"],["Pfam%3APF02610","L-arabinose isomerase N-terminal domain"],["Pfam%3APF11762","L-arabinose isomerase C-terminal domain"],["Pfam%3APF17727","CtsR C-terminal dimerization domain"]]},{"id":"GO:0099512","l":"supramolecular fiber","na":1,"nb":19,"a":[["cytoskeleton/cytoophidium.html","cytoophidium"]],"b":[["GO%3A0098647","collagen beaded filament"],["GO%3A0043292","contractile muscle fiber"],["GO%3A0097268","cytoophidium"],["GO%3A0071953","elastic fiber"],["GO%3A0061800","fibronectin fibril"],["GO%3A0061836","intranuclear rod"]]},{"id":"NCBITaxon:330779","l":"Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)","na":1,"nb":19,"a":[["appendage/archaeal_type_flagellum.html","archaeal-type flagellum"]],"b":[["Pfam%3APF12846","AAA-like domain"],["Pfam%3APF27338","Cytochrome b558/566 subunit B"],["Pfam%3APF18822","CdvA-like coiled-coil domain"],["Pfam%3APF27303","Cell division protein CdvB, C-terminal HTH domain"],["Pfam%3APF27251","DNA import protein CedA1"],["Pfam%3APF18533","Domain of unknown function (DUF5622)"]]},{"id":"UniProt:P02942","l":"","na":1,"nb":19,"a":[["other/methyl_accepting_chemotaxis_protein_complex.html","methyl accepting chemotaxis protein complex"]],"b":[["GO%3A0098561","methyl accepting chemotaxis protein complex"],["GO%3A0009593","detection of chemical stimulus"],["GO%3A1902021","regulation of bacterial-type flagellum-dependent cell motility"],["NCBIfam%3ANF011615","methyl-accepting chemotaxis protein"],["CDD%3Acd06225","HAMP"],["CDD%3Acd19407","Tar_Tsr_sensor"]]},{"id":"UniProt:P07017","l":"","na":1,"nb":19,"a":[["other/methyl_accepting_chemotaxis_protein_complex.html","methyl accepting chemotaxis protein complex"]],"b":[["GO%3A0098561","methyl accepting chemotaxis protein complex"],["GO%3A0043424","protein histidine kinase binding"],["GO%3A0009593","detection of chemical stimulus"],["NCBIfam%3ANF011622","methyl-accepting chemotaxis protein II"],["CDD%3Acd06225","HAMP"],["CDD%3Acd19407","Tar_Tsr_sensor"]]},{"id":"UniProt:P60723","l":"Large ribosomal subunit protein uL4","na":1,"nb":19,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["GO%3A0022625","cytosolic large ribosomal subunit"],["GO%3A0015934","large ribosomal subunit"],["GO%3A0060698","endoribonuclease inhibitor activity"],["GO%3A0048027","mRNA 5'-UTR binding"],["GO%3A0001070","RNA-binding transcription regulator activity"]]},{"id":"CHEBI:16838","l":"polyphosphate","na":1,"nb":18,"a":[["membrane_organelle/acidocalcisome.html","acidocalcisome"]],"b":[["EC%3A2.7.1.63","polyphosphate--glucose phosphotransferase"],["EC%3A2.7.4.1","ATP-polyphosphate phosphotransferase"],["EC%3A2.7.4.17","3-phosphoglyceroyl-phosphate--polyphosphate phosphotransferase"],["EC%3A2.7.4.20","dolichyl-diphosphate--polyphosphate phosphotransferase"],["EC%3A2.7.4.33","AMP-polyphosphate phosphotransferase"],["EC%3A2.7.4.34","GDP-polyphosphate phosphotransferase"]]},{"id":"GO:0000048","l":"peptidyltransferase activity","na":1,"nb":18,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["EC%3A2.3.2.12","peptidyltransferase"],["ComplexPortal%3ACPX-5226","39S mitochondrial large ribosomal subunit"],["ComplexPortal%3ACPX-5302","39S mitochondrial large ribosomal subunit"],["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["ComplexPortal%3ACPX-1602","54S mitochondrial large ribosomal subunit"],["ComplexPortal%3ACPX-1601","60S cytosolic large ribosomal subunit"]]},{"id":"GO:0030257","l":"type III protein secretion system complex","na":1,"nb":18,"a":[["secretion_system/type_iii_protein_secretion_system_complex.html","type III protein secretion system complex"]],"b":[["ComplexPortal%3ACPX-5885","Flagellar export complex"],["GO%3A0030257","type III protein secretion system complex"],["NCBIfam%3ANF006290","flagellar protein export ATPase FliI"],["NCBIfam%3ATIGR03498","flagellar protein export ATPase FliI"],["NCBIfam%3ATIGR01026","FliI/YscN family ATPase"],["NCBIfam%3ATIGR02554","PrgH/EprH family type III secretion apparatus protein"]]},{"id":"GO:0031253","l":"cell projection membrane","na":1,"nb":18,"a":[["appendage/ciliary_membrane.html","ciliary membrane"]],"b":[["GO%3A0031526","brush border membrane"],["GO%3A0031253","cell projection membrane"],["GO%3A0060170","ciliary membrane"],["GO%3A0031527","filopodium membrane"],["GO%3A0031258","lamellipodium membrane"],["GO%3A0070686","macropinocytic cup membrane"]]},{"id":"GO:0031982","l":"vesicle","na":1,"nb":18,"a":[["membrane_organelle/cytoplasmic_vesicle.html","cytoplasmic vesicle"]],"b":[["GO%3A1903561","extracellular vesicle"],["GO%3A0097708","intracellular vesicle"],["GO%3A0031982","vesicle"],["PANTHER%3APTHR47395","BPI FOLD-CONTAINING FAMILY B MEMBER 1"],["PANTHER%3APTHR15152","CD70 ANTIGEN"],["PANTHER%3APTHR44314","CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 70"]]},{"id":"GO:0140737","l":"encapsulin nanocompartment","na":1,"nb":18,"a":[["microcompartment/encapsulin_nanocompartment.html","encapsulin nanocompartment"]],"b":[["GO%3A0140737","encapsulin nanocompartment"],["NCBIfam%3ATIGR04535","encapsulin-associated ferritin-like protein"],["NCBIfam%3ANF058680","encapsulin nanocompartment cargo ferric reductase EncD"],["NCBIfam%3ANF058678","encapsulin nanocompartment ferritin-like cargo protein EncB"],["NCBIfam%3ANF058679","encapsulin nanocompartment ferritin-likeEncB family encapsulin nanocompartment ferritin-like cargo protein cargo protein"],["NCBIfam%3ANF041155","family 1 encapsulin nanocompartment shell protein"]]},{"id":"GO:0160303","l":"protein secretion by the type IX secretion system","na":1,"nb":18,"a":[["secretion_system/type_ix_protein_secretion_system_complex.html","type IX protein secretion system complex"]],"b":[["GO%3A0160303","protein secretion by the type IX secretion system"],["NCBIfam%3ANF052230","PorE family type IX secretion system protein"],["NCBIfam%3ATIGR03519","PorP/SprF family type IX secretion system membrane protein"],["NCBIfam%3ANF052314","PorY family sensor histidine kinase"],["NCBIfam%3ATIGR04189","T9SS outer membrane translocon Sov/SprA"],["NCBIfam%3ANF052313","T9SS response regulator signal transducer PorX"]]},{"id":"UniProt:P24073","l":"","na":1,"nb":18,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"]],"b":[["EC%3A3.-.-.-","Hydrolases"],["GO%3A0009425","bacterial-type flagellum basal body"],["GO%3A0003774","cytoskeletal motor activity"],["GO%3A0044780","bacterial-type flagellum assembly"],["GO%3A0071978","bacterial-type flagellum-dependent swarming motility"],["GO%3A0016311","dephosphorylation"]]},{"id":"GO:0000407","l":"phagophore assembly site","na":1,"nb":17,"a":[["other/phagophore_assembly_site.html","phagophore assembly site"]],"b":[["ComplexPortal%3ACPX-1383","TRAPPIII protein complex"],["ComplexPortal%3ACPX-373","ULK1-ATG13-RB1CC1-ATG101 autophagy 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germination"]]},{"id":"DOI:10.1128/ecosalplus.ESP-0034-2018","l":"","na":1,"nb":16,"a":[["secretion_system/type_ii_protein_secretion_system_complex.html","type II protein secretion system complex"]],"b":[["NCBIfam%3ANF037978","type II secretion system assembly factor GspB"],["NCBIfam%3ATIGR02533","type II secretion system ATPase GspE"],["NCBIfam%3ATIGR01710","type II secretion system major pseudopilin GspG"],["NCBIfam%3ATIGR01708","type II secretion system minor pseudopilin GspH"],["NCBIfam%3ATIGR01707","type II secretion system minor pseudopilin GspI"],["NCBIfam%3ATIGR01711","type II secretion system minor pseudopilin GspJ"]]},{"id":"GO:0030968","l":"endoplasmic reticulum unfolded protein response","na":1,"nb":16,"a":[["membrane_organelle/endoplasmic_reticulum.html","endoplasmic reticulum"]],"b":[["GO%3A0036500","ATF6-mediated unfolded protein response"],["GO%3A0030968","endoplasmic reticulum unfolded protein response"],["GO%3A0036498","IRE1-mediated unfolded protein response"],["GO%3A0036499","PERK-mediated unfolded protein response"],["Reactome%3AR-HSA-8874177","ATF6B (ATF6-beta) activates chaperones"],["Reactome%3AR-HSA-381119","Unfolded Protein Response (UPR)"]]},{"id":"NCBITaxon:1428","l":"Bacillus thuringiensis","na":1,"nb":16,"a":[["cytoskeleton/tubz_filament.html","TubZ filament"]],"b":[["Pfam%3APF10014","2OG-Fe dioxygenase"],["Pfam%3APF28265","Lipoprotein N-acylation protein LnsA-like"],["Pfam%3APF16403","Bacterial surface protein, Ig-like domain"],["Pfam%3APF03944","delta endotoxin"],["Pfam%3APF03945","delta endotoxin, N-terminal domain"],["Pfam%3APF06355","Aegerolysin"]]},{"id":"UniProt:P0A7S3","l":"Small ribosomal subunit protein uS12","na":1,"nb":16,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["GO%3A0022627","cytosolic small ribosomal subunit"],["GO%3A0005840","ribosome"],["GO%3A0034336","misfolded RNA binding"],["GO%3A0019843","rRNA binding"],["GO%3A0000049","tRNA binding"]]},{"id":"DOI:10.1038/nrmicro1887","l":"","na":15,"nb":1,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"],["appendage/bacterial_type_flagellum_basal_body.html","bacterial-type flagellum basal body"],["appendage/bacterial_type_flagellum_basal_body_c_ring.html","bacterial-type flagellum basal body, C ring"],["appendage/bacterial_type_flagellum_basal_body_distal_rod.html","bacterial-type flagellum basal body, distal rod"],["appendage/bacterial_type_flagellum_basal_body_distal_rod_l_ring.html","bacterial-type flagellum basal body, distal rod, L ring"],["appendage/bacterial_type_flagellum_basal_body_distal_rod_p_ring.html","bacterial-type flagellum basal body, distal rod, P ring"]],"b":[["NCBIfam%3ANF024544","flagella basal body P-ring formation protein FlgA"]]},{"id":"GO:0005811","l":"lipid droplet","na":1,"nb":15,"a":[["inclusion/lipid_droplet.html","lipid droplet"]],"b":[["ComplexPortal%3ACPX-2148","Phosphatidylinositol transporter complex"],["ComplexPortal%3ACPX-3342","Seipin complex"],["GO%3A0005633","ascus lipid droplet"],["GO%3A0005811","lipid droplet"],["GO%3A0012511","monolayer-surrounded lipid storage body"],["NCBIfam%3ATIGR04278","antiviral radical SAM protein viperin"]]},{"id":"UniProt:P0A7J7","l":"Large ribosomal subunit protein uL11","na":1,"nb":15,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["GO%3A0015968","stringent response"],["GO%3A0006415","translational termination"],["NCBIfam%3ATIGR01632","50S ribosomal protein L11"],["InterPro%3AIPR020785","Large ribosomal subunit protein uL11, conserved site"],["CDD%3Acd00349","Ribosomal_L11"]]},{"id":"GO:0006360","l":"transcription by RNA polymerase I","na":1,"nb":14,"a":[["other/nucleolus.html","nucleolus"]],"b":[["GO%3A0042790","nucleolar large rRNA transcription by RNA polymerase I"],["GO%3A0006360","transcription by RNA polymerase I"],["Reactome%3AR-HSA-73864","RNA Polymerase I Transcription"],["PANTHER%3APTHR14440","DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49"],["PANTHER%3APTHR47227","DNA-DIRECTED RNA POLYMERASE SUBUNIT K"],["PANTHER%3APTHR10535","DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1"]]},{"id":"GO:0009277","l":"fungal-type cell wall","na":1,"nb":14,"a":[["envelope/fungal_type_cell_wall.html","fungal-type cell wall"]],"b":[["ComplexPortal%3ACPX-1812","1,3-beta-D-glucan synthase complex, FKS1-RHO1 variant"],["GO%3A0005619","ascospore wall"],["GO%3A0009277","fungal-type cell wall"],["GO%3A0030446","hyphal cell wall"],["GO%3A0030445","yeast-form cell wall"],["InterPro%3AIPR019778","Class I Hydrophobin, conserved site"]]},{"id":"GO:0010494","l":"cytoplasmic stress granule","na":1,"nb":14,"a":[["ribonucleoprotein/cytoplasmic_stress_granule.html","cytoplasmic stress granule"]],"b":[["ComplexPortal%3ACPX-21432","CAPRIN1-G3BP1, stress granules assembly regulating complex"],["ComplexPortal%3ACPX-18979","CAPRIN1-G3BP2, stress granules assembly regulating complex"],["ComplexPortal%3ACPX-8306","FMR1-FXR1 RNA-binding complex"],["ComplexPortal%3ACPX-8322","FMR1-FXR2 RNA-binding complex"],["ComplexPortal%3ACPX-8305","FMR1 RNA-binding homodimer"],["ComplexPortal%3ACPX-8342","FXR1-FXR2 RNA-binding complex"]]},{"id":"UniProt:P0A7R5","l":"Small ribosomal subunit protein uS10","na":1,"nb":14,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["ComplexPortal%3ACPX-5780","lambdaN-dependent processive transcription antitermination complex"],["ComplexPortal%3ACPX-5674","Transcription elongation complex"],["GO%3A0001072","transcription antitermination factor activity, RNA binding"],["GO%3A0032784","regulation of DNA-templated transcription elongation"],["GO%3A0031564","transcription antitermination"]]},{"id":"UniProt:P23446","l":"","na":1,"nb":14,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"]],"b":[["GO%3A0030694","bacterial-type flagellum basal body, rod"],["GO%3A0009424","bacterial-type flagellum hook"],["NCBIfam%3ATIGR02490","flagellar basal-body rod protein FlgF"],["NCBIfam%3ANF009278","flagellar basal body rod protein FlgG"],["NCBIfam%3ATIGR03506","flagellar hook-basal body complex protein"],["InterPro%3AIPR019776","Flagellar basal body rod protein, conserved site"]]},{"id":"GO:0030990","l":"intraciliary transport particle","na":1,"nb":13,"a":[["appendage/cilium.html","cilium"]],"b":[["GO%3A0030990","intraciliary transport particle"],["PANTHER%3APTHR16011","IFT57/HIPPI"],["PANTHER%3APTHR31978","INTRAFLAGELLAR TRANSPORT PROTEIN 20 HOMOLOG"],["PANTHER%3APTHR33724","INTRAFLAGELLAR TRANSPORT PROTEIN 43 HOMOLOG"],["PANTHER%3APTHR13376","INTRAFLAGELLAR TRANSPORT PROTEIN 46 HOMOLOG"],["PANTHER%3APTHR14781","INTRAFLAGELLAR TRANSPORT PROTEIN 56"]]},{"id":"GO:0032153","l":"cell division site","na":1,"nb":13,"a":[["division_machinery/divisome_complex.html","divisome 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ribosomal subunit protein bL27","na":1,"nb":13,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["GO%3A0022625","cytosolic large ribosomal subunit"],["GO%3A0043022","ribosome binding"],["GO%3A0000049","tRNA binding"],["GO%3A1902626","assembly of large subunit precursor of preribosome"],["GO%3A0002181","cytoplasmic translation"]]},{"id":"UniProt:P0AG67","l":"Small ribosomal subunit protein bS1","na":1,"nb":13,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ANF004951","30S ribosomal protein S1"],["NCBIfam%3ANF004952","30S ribosomal protein S1"],["NCBIfam%3ANF004954","30S ribosomal protein S1"],["NCBIfam%3ATIGR00717","30S ribosomal protein S1"],["proteintraitsmech%3AMEROPS_CLEAVAGE_A02_011","human endogenous retrovirus K retropepsin cleavage specificity"]]},{"id":"UniProt:P0AGA2","l":"","na":1,"nb":13,"a":[["secretion_system/secyeg_translocon_complex.html","SecYEG translocon complex"]],"b":[["ComplexPortal%3ACPX-1095","Holo-translocon SecYEG-SecDF-YajC-YidC complex"],["ComplexPortal%3ACPX-1096","Protein-conducting channel SecYEG complex"],["GO%3A0031522","cell envelope Sec protein transport complex"],["GO%3A0005048","signal sequence receptor activity"],["GO%3A0043952","protein transport by the Sec complex"],["GO%3A0006616","SRP-dependent cotranslational protein targeting to membrane, translocation"]]},{"id":"UniProt:P61175","l":"Large ribosomal subunit protein uL22","na":1,"nb":13,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["GO%3A0015934","large ribosomal subunit"],["GO%3A0070180","large ribosomal subunit rRNA binding"],["GO%3A1902626","assembly of large subunit precursor of preribosome"],["GO%3A0042256","cytosolic ribosome assembly"],["GO%3A0042255","ribosome assembly"]]},{"id":"GO:0061617","l":"MICOS complex","na":1,"nb":12,"a":[["membrane_organelle/mitochondrial_crista.html","mitochondrial crista"]],"b":[["ComplexPortal%3ACPX-140","MICOS mitochondrial contact site and cristae organizing system complex"],["ComplexPortal%3ACPX-25732","MICOS mitochondrial contact site and cristae organizing system complex, MIC10A variant"],["ComplexPortal%3ACPX-25733","MICOS mitochondrial contact site and cristae organizing system complex, MIC10B variant"],["ComplexPortal%3ACPX-25735","MICOS mitochondrial contact site and cristae organizing system complex, MIC10C variant"],["ComplexPortal%3ACPX-6141","MICOS mitochondrial contact site and cristae organizing system complex"],["GO%3A0061617","MICOS complex"]]},{"id":"NCBITaxon:203119","l":"Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)","na":1,"nb":12,"a":[["other/cellulosome.html","cellulosome"]],"b":[["Pfam%3APF03425","Carbohydrate binding domain (family 11)"],["Pfam%3APF00942","Cellulose binding domain"],["Pfam%3APF17996","Carbohydrate esterase 2 N-terminal"],["Pfam%3APF00963","Cohesin domain"],["Pfam%3APF16654","Diaminopimelic acid dehydrogenase C-terminal domain"],["Pfam%3APF00404","Dockerin type I domain"]]},{"id":"NCBITaxon:224326","l":"Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)","na":1,"nb":12,"a":[["appendage/periplasmic_flagellum.html","periplasmic flagellum"]],"b":[["Pfam%3APF09822","ABC-type uncharacterized transport system"],["Pfam%3APF02352","Decorin binding protein"],["Pfam%3APF23357","Domain of unknown function (DUF7088)"],["Pfam%3APF27167","GRAD helix-turn-helix domain"],["Pfam%3APF28090","BB0208-like"],["Pfam%3APF02999","Borrelia orf-D family"]]},{"id":"NCBITaxon:5702","l":"Trypanosoma brucei brucei","na":1,"nb":12,"a":[["appendage/paraflagellar_rod.html","paraflagellar rod"]],"b":[["IDPO%3A0000031","flexible C-terminal tail"],["IDPO%3A0000032","flexible N-terminal tail"],["Pfam%3APF05887","Procyclic acidic repetitive protein (PARP)"],["Pfam%3APF18526","Thymine dioxygenase JBP1 DNA-binding domain"],["Pfam%3APF22592","FCaBP EF-hand domain"],["Pfam%3APF12131","Protein of unknown function (DUF3586)"]]},{"id":"UniProt:P0A7R1","l":"Large ribosomal subunit protein bL9","na":1,"nb":12,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR00158","50S ribosomal protein L9"],["InterPro%3AIPR020069","Large ribosomal subunit protein bL9, C-terminal"],["InterPro%3AIPR020070","Large ribosomal subunit protein bL9, N-terminal"],["Pfam%3APF03948","Ribosomal protein L9, C-terminal domain"],["Pfam%3APF01281","Ribosomal protein L9, N-terminal domain"]]},{"id":"UniProt:P0AG96","l":"","na":1,"nb":12,"a":[["secretion_system/secyeg_translocon_complex.html","SecYEG translocon complex"]],"b":[["ComplexPortal%3ACPX-1095","Holo-translocon SecYEG-SecDF-YajC-YidC complex"],["ComplexPortal%3ACPX-1096","Protein-conducting channel SecYEG complex"],["GO%3A0031522","cell envelope Sec protein transport complex"],["GO%3A0043952","protein transport by the Sec complex"],["GO%3A0006616","SRP-dependent cotranslational protein targeting to membrane, translocation"],["NCBIfam%3ANF004372","preprotein translocase subunit SecE"]]},{"id":"UniProt:P23448","l":"","na":1,"nb":12,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"]],"b":[["GO%3A0009425","bacterial-type flagellum basal body"],["GO%3A0071973","bacterial-type flagellum-dependent cell motility"],["GO%3A0071978","bacterial-type flagellum-dependent swarming motility"],["NCBIfam%3ATIGR00207","flagellar motor switch protein FliG"],["InterPro%3AIPR023087","Flagellar motor switch protein FliG, C-terminal"],["InterPro%3AIPR032779","Flagellar motor switch protein FliG, middle domain"]]},{"id":"UniProt:P60422","l":"Large ribosomal subunit protein uL2","na":1,"nb":12,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["ComplexPortal%3ACPX-1944","DnaA-L2 DNA replication initiation inhibitory complex"],["GO%3A0032297","negative regulation of DNA-templated DNA replication initiation"],["NCBIfam%3ATIGR01171","50S ribosomal protein L2"],["InterPro%3AIPR022671","Large ribosomal subunit protein uL2, conserved site"],["InterPro%3AIPR022669","Large ribosomal subunit protein uL2, C-terminal"]]},{"id":"DOI:10.1038/nature00769","l":"","na":1,"nb":11,"a":[["other/nucleolus.html","nucleolus"]],"b":[["InterPro%3AIPR018972","Sas10 C-terminal domain"],["InterPro%3AIPR007148","Small-subunit processome, Utp12"],["InterPro%3AIPR022125","U3 small nucleolar RNA-associated protein 10, N-terminal"],["InterPro%3AIPR013934","U3 small nucleolar RNA-associated protein 13, C-terminal"],["InterPro%3AIPR018983","U3 small nucleolar RNA-associated protein 15, C-terminal"],["InterPro%3AIPR056907","U3 small nucleolar RNA-associated protein 6 homolog, C-terminal"]]},{"id":"GO:0030660","l":"Golgi-associated vesicle membrane","na":1,"nb":11,"a":[["membrane_organelle/copi_coated_vesicle_membrane.html","COPI-coated vesicle membrane"]],"b":[["GO%3A0030663","COPI-coated vesicle membrane"],["GO%3A0030660","Golgi-associated vesicle membrane"],["GO%3A0012510","trans-Golgi network transport vesicle membrane"],["PANTHER%3APTHR16156","AFTIPHILIN A-RELATED"],["PANTHER%3APTHR15463","AP1 GAMMA SUBUNIT BINDING PROTEIN 1"],["PANTHER%3APTHR19876","COATOMER"]]},{"id":"GO:0031262","l":"Ndc80 complex","na":1,"nb":11,"a":[["other/kinetochore.html","kinetochore"]],"b":[["ComplexPortal%3ACPX-26614","NDC80 complex"],["ComplexPortal%3ACPX-548","NDC80 complex"],["ComplexPortal%3ACPX-549","Ndc80 complex"],["ComplexPortal%3ACPX-550","Ndc80 complex"],["ComplexPortal%3ACPX-551","Ndc80 complex"],["ComplexPortal%3ACPX-806","Ndc80 complex"]]},{"id":"GO:1990586","l":"divisome complex","na":1,"nb":11,"a":[["division_machinery/divisome_complex.html","divisome complex"]],"b":[["ComplexPortal%3ACPX-1936","Divisome complex"],["ComplexPortal%3ACPX-3299","FtsBL complex"],["ComplexPortal%3ACPX-3099","FtsQBL complex"],["GO%3A1990586","divisome complex"],["GO%3A1990588","FtsBL complex"],["GO%3A1990587","FtsQBL complex"]]},{"id":"UniProt:O32062","l":"","na":1,"nb":11,"a":[["spore/endospore_external_encapsulating_structure.html","endospore external encapsulating structure"]],"b":[["GO%3A0043595","endospore cortex"],["GO%3A0042763","intracellular immature spore"],["GO%3A0008932","lytic endotransglycosylase activity"],["CDD%3Acd00118","LysM"],["InterPro%3AIPR018392","LysM domain"],["InterPro%3AIPR014248","Spore coat assembly protein SafA"]]},{"id":"UniProt:P02359","l":"Small ribosomal subunit protein uS7","na":1,"nb":11,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["GO%3A0022627","cytosolic small ribosomal subunit"],["GO%3A0000028","ribosomal small subunit assembly"],["NCBIfam%3ATIGR01029","30S ribosomal protein S7"],["InterPro%3AIPR020606","Small ribosomal subunit protein uS7, conserved site"],["CDD%3Acd14869","uS7_Bacteria"]]},{"id":"UniProt:P0A6E6","l":"","na":1,"nb":11,"a":[["energy_complex/proton_transporting_atp_synthase_complex.html","proton-transporting ATP synthase complex"]],"b":[["ComplexPortal%3ACPX-4022","ATP synthase complex"],["NCBIfam%3ATIGR01216","ATP synthase F1 subunit epsilon"],["NCBIfam%3ANF001847","F0F1 ATP synthase subunit epsilon"],["CDD%3Acd12152","F1-ATPase_delta"],["InterPro%3AIPR020547","ATP synthase epsilon subunit, C-terminal domain"],["InterPro%3AIPR020546","ATP synthase, F1 complex, delta/epsilon subunit, N-terminal"]]},{"id":"UniProt:P0A7J3","l":"Large ribosomal subunit protein uL10","na":1,"nb":11,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ANF000955","50S ribosomal protein L10"],["InterPro%3AIPR002363","Large ribosomal subunit protein uL10, conserved site, bacteria"],["CDD%3Acd05797","Ribosomal_L10"],["InterPro%3AIPR001790","Large ribosomal subunit protein uL10, N-terminal"],["Pfam%3APF00466","Ribosomal protein L10"]]},{"id":"UniProt:P0A7K2","l":"Large ribosomal subunit protein bL12","na":1,"nb":11,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR00855","50S ribosomal protein L7/L12"],["CDD%3Acd00387","Ribosomal_L7_L12"],["InterPro%3AIPR013823","Large ribosomal subunit protein bL12, C-terminal"],["InterPro%3AIPR008932","Large ribosomal subunit protein bL12, oligomerization"],["Pfam%3APF16320","Ribosomal protein L7/L12 dimerisation domain"]]},{"id":"UniProt:P68699","l":"","na":1,"nb":11,"a":[["energy_complex/proton_transporting_atp_synthase_complex.html","proton-transporting ATP synthase complex"]],"b":[["RHEA%3A57720","ATP + H2O + 4 H(+)(in) = ADP + phosphate + 5 H(+)(out)"],["ComplexPortal%3ACPX-4022","ATP synthase complex"],["GO%3A0033177","proton-transporting two-sector ATPase complex, proton-transporting domain"],["GO%3A0042777","proton motive force-driven plasma membrane ATP synthesis"],["NCBIfam%3ATIGR01260","ATP synthase F0 subunit C"],["NCBIfam%3ANF005363","F0F1 ATP synthase subunit C"]]},{"id":"GO:0000940","l":"outer kinetochore","na":1,"nb":10,"a":[["other/mis12_mind_type_complex.html","MIS12/MIND type complex"]],"b":[["GO%3A0000444","MIS12/MIND type complex"],["GO%3A0000940","outer kinetochore"],["PANTHER%3APTHR14778","KINETOCHORE-ASSOCIATED PROTEIN DSN1 HOMOLOG"],["PANTHER%3APTHR31749","KINETOCHORE-ASSOCIATED PROTEIN NSL1 HOMOLOG"],["PANTHER%3APTHR10643","KINETOCHORE PROTEIN 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ribosomal protein L31"],["Pfam%3APF01197","Ribosomal protein L31"]]},{"id":"UniProt:P0A7S9","l":"Small ribosomal subunit protein uS13","na":1,"nb":10,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ATIGR03631","30S ribosomal protein S13"],["InterPro%3AIPR018269","Small ribosomal subunit protein uS13, conserved site"],["Pfam%3APF00416","Ribosomal protein S13/S18"],["InterPro%3AIPR027437","Small ribosomal subunit protein uS13, C-terminal"],["InterPro%3AIPR010979","Small ribosomal subunit protein uS13-like, H2TH"]]},{"id":"UniProt:P0A7V3","l":"Small ribosomal subunit protein uS3","na":1,"nb":10,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ATIGR01009","30S ribosomal protein S3"],["InterPro%3AIPR018280","Small ribosomal subunit protein uS3, conserved site"],["CDD%3Acd02412","KH-II_30S_S3"],["InterPro%3AIPR001351","Small ribosomal subunit protein uS3, C-terminal"],["Pfam%3APF07650","KH domain"]]},{"id":"UniProt:P0A964","l":"","na":1,"nb":10,"a":[["other/methyl_accepting_chemotaxis_protein_complex.html","methyl accepting chemotaxis protein complex"]],"b":[["GO%3A0098561","methyl accepting chemotaxis protein complex"],["GO%3A0009454","aerotaxis"],["GO%3A0051649","establishment of localization in cell"],["NCBIfam%3ANF007903","chemotaxis protein CheW"],["CDD%3Acd00732","CheW"],["InterPro%3AIPR002545","CheW-like domain"]]},{"id":"UniProt:P0AB98","l":"","na":1,"nb":10,"a":[["energy_complex/proton_transporting_atp_synthase_complex.html","proton-transporting ATP synthase complex"]],"b":[["ComplexPortal%3ACPX-4022","ATP synthase complex"],["NCBIfam%3ANF004477","F0F1 ATP synthase subunit A"],["NCBIfam%3ATIGR01131","F0F1 ATP synthase subunit A"],["InterPro%3AIPR023011","ATP synthase, F0 complex, subunit A, active site"],["CDD%3Acd00310","ATP-synt_Fo_a_6"],["Pfam%3APF00119","ATP synthase A chain"]]},{"id":"UniProt:P0ABA6","l":"","na":1,"nb":10,"a":[["energy_complex/proton_transporting_atp_synthase_complex.html","proton-transporting ATP synthase complex"]],"b":[["ComplexPortal%3ACPX-4022","ATP synthase complex"],["GO%3A0042777","proton motive force-driven plasma membrane ATP synthesis"],["NCBIfam%3ATIGR01146","ATP synthase F1 subunit gamma"],["NCBIfam%3ANF004144","F0F1 ATP synthase subunit gamma"],["InterPro%3AIPR023632","ATP synthase, F1 complex, gamma subunit conserved site"],["CDD%3Acd12151","F1-ATPase_gamma"]]},{"id":"UniProt:P0ABB0","l":"","na":1,"nb":10,"a":[["energy_complex/proton_transporting_atp_synthase_complex.html","proton-transporting ATP synthase complex"]],"b":[["ComplexPortal%3ACPX-4022","ATP synthase complex"],["NCBIfam%3ANF009884","F0F1 ATP synthase subunit alpha"],["NCBIfam%3ATIGR00962","F0F1 ATP synthase subunit 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3"],["InterPro%3AIPR042196","FHIPEP, domain 4"]]},{"id":"UniProt:P39064","l":"","na":1,"nb":10,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"]],"b":[["GO%3A0120101","bacterial-type flagellum stator complex"],["NCBIfam%3ANF005382","flagellar motor protein MotS"],["CDD%3Acd07185","OmpA_C-like"],["InterPro%3AIPR025713","Motility protein B-like, N-terminal domain"],["InterPro%3AIPR006665","OmpA-like domain"],["Pfam%3APF13677","Membrane MotB of proton-channel complex MotA/MotB"]]},{"id":"UniProt:P62399","l":"Large ribosomal subunit protein uL5","na":1,"nb":10,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ANF000585","50S ribosomal protein L5"],["InterPro%3AIPR020929","Large ribosomal subunit protein uL5, conserved site"],["InterPro%3AIPR031309","Large ribosomal subunit protein uL5, C-terminal"],["InterPro%3AIPR031310","Large ribosomal subunit protein uL5, N-terminal"],["Pfam%3APF00673","ribosomal L5P family C-terminus"]]},{"id":"CHEBI:18248","l":"iron atom","na":1,"nb":9,"a":[["membrane_organelle/magnetosome.html","magnetosome"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_18248","requires Fe"],["proteintraitsmech%3AMETALPDB_FE_DINUCLEAR","dinuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_HEPTANUCLEAR","heptanuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_HEXANUCLEAR","hexanuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_MONONUCLEAR","mononuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_OCTANUCLEAR","octanuclear iron site"]]},{"id":"DOI:10.1126/science.289.5481.905","l":"","na":1,"nb":9,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["NCBIfam%3ANF003303","50S ribosomal protein L21e"],["InterPro%3AIPR020052","Large ribosomal subunit protein eL31, conserved site"],["InterPro%3AIPR018263","Large ribosomal subunit protein eL32, conserved site"],["InterPro%3AIPR018260","Large ribosomal subunit protein uL22, 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pneumoniae","na":1,"nb":9,"a":[["envelope/capsule.html","capsule"]],"b":[["Pfam%3APF19567","Capsular polysaccharide synthesis, CpsB/CapC"],["Pfam%3APF07501","G5 domain"],["Pfam%3APF13551","Winged helix-turn helix"],["Pfam%3APF02920","DNA binding domain of tn916 integrase"],["Pfam%3APF03047","COMC family"],["Pfam%3APF04556","DpnII restriction endonuclease"]]},{"id":"NCBITaxon:5691","l":"Trypanosoma brucei","na":9,"nb":1,"a":[["cytoskeleton/bilobe_structure.html","bilobe structure"],["cytoskeleton/ciliary_pocket_collar.html","ciliary pocket collar"],["cytoskeleton/flagellum_attachment_zone.html","flagellum attachment zone"],["cytoskeleton/tripartite_attachment_complex.html","tripartite attachment complex"],["membrane_organelle/flagellar_pocket.html","flagellar pocket"],["membrane_organelle/glycosome.html","glycosome"]],"b":[["TED%3AAF-A0A1J0R543-F1-model_v4_TED02","TED novel fold AF-A0A1J0R543-F1-model_v4_TED02"]]},{"id":"UniProt:P02358","l":"Small ribosomal subunit protein bS6","na":1,"nb":9,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ATIGR00166","30S ribosomal protein S6"],["InterPro%3AIPR020815","Small ribosomal subunit protein bS6, conserved site"],["CDD%3Acd00473","bS6"],["Pfam%3APF01250","Ribosomal protein S6"],["InterPro%3AIPR035980","Small ribosomal subunit protein bS6 superfamily"]]},{"id":"UniProt:P0A7L3","l":"Large ribosomal subunit protein bL20","na":1,"nb":9,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR01032","50S ribosomal protein L20"],["InterPro%3AIPR049946","Large ribosomal subunit protein bL20, conserved site"],["CDD%3Acd07026","Ribosomal_L20"],["Pfam%3APF00453","Ribosomal protein L20"],["InterPro%3AIPR035566","Ribosomal protein bL20, C-terminal"]]},{"id":"UniProt:P0A9X4","l":"","na":1,"nb":9,"a":[["cytoskeleton/mreb_filament.html","MreB filament"]],"b":[["ComplexPortal%3ACPX-5718","Elongasome complex"],["GO%3A0099513","polymeric cytoskeletal fiber"],["GO%3A0043093","FtsZ-dependent cytokinesis"],["GO%3A0009252","peptidoglycan biosynthetic process"],["GO%3A0051983","regulation of chromosome segregation"],["NCBIfam%3ATIGR00904","MreB/Mrl family cell shape determining protein"]]},{"id":"UniProt:P0AA10","l":"Large ribosomal subunit protein uL13","na":1,"nb":9,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["GO%3A0070180","large ribosomal subunit rRNA binding"],["NCBIfam%3ATIGR01066","50S ribosomal protein L13"],["InterPro%3AIPR023563","Large ribosomal subunit protein uL13, conserved site"],["CDD%3Acd00392","Ribosomal_L13"],["Pfam%3APF00572","Ribosomal protein L13"]]},{"id":"UniProt:P0ADZ4","l":"Small ribosomal subunit protein uS15","na":1,"nb":9,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["GO%3A0070181","small ribosomal subunit rRNA binding"],["NCBIfam%3ATIGR00952","30S ribosomal protein S15"],["CDD%3Acd00353","Ribosomal_S15p_S13e"],["Pfam%3APF00312","Ribosomal protein S15"],["InterPro%3AIPR009068","uS15/NS1, RNA-binding domain superfamily"]]},{"id":"UniProt:P23453","l":"","na":1,"nb":9,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"]],"b":[["GO%3A0009425","bacterial-type flagellum basal body"],["NCBIfam%3ATIGR01397","flagellar motor switch protein FliM"],["CDD%3Acd17908","FliM"],["InterPro%3AIPR001543","Flagellar motor switch protein FliN-like, C-terminal domain"],["Pfam%3APF02154","Flagellar motor switch protein FliM"],["InterPro%3AIPR028976","CheC-like superfamily"]]},{"id":"DOI:10.1038/s41467-017-02784-7","l":"","na":1,"nb":8,"a":[["secretion_system/type_ix_protein_secretion_system_complex.html","type IX protein secretion system complex"]],"b":[["NCBIfam%3ATIGR03517","type IX secretion system motor protein PorM/GldM"],["InterPro%3AIPR022719","Gliding motility-associated protein GldM, C-terminal"],["InterPro%3AIPR048405","Type IX secretion system motor protein PorM/GldM, first immunoglobulin-like domain"],["InterPro%3AIPR022720","Type IX secretion system motor protein PorM/GldM, N-terminal"],["InterPro%3AIPR048406","Type IX secretion system motor protein PorM/GldM, second immunoglobulin-like domain"],["NCBIfam%3ANF023503","GldM family protein"]]},{"id":"GO:0000917","l":"division septum assembly","na":1,"nb":8,"a":[["division_machinery/divisome_complex.html","divisome complex"]],"b":[["ComplexPortal%3ACPX-1936","Divisome complex"],["GO%3A0000917","division septum assembly"],["GO%3A0140278","mitotic division septum assembly"],["NCBIfam%3ATIGR02205","cell division protein ZipA"],["NCBIfam%3ATIGR00172","Maf family nucleotide pyrophosphatase"],["PANTHER%3APTHR36419","ARRESTIN FAMILY PROTEIN 1"]]},{"id":"GO:0005798","l":"Golgi-associated vesicle","na":1,"nb":8,"a":[["membrane_organelle/copi_coated_vesicle.html","COPI-coated vesicle"]],"b":[["ComplexPortal%3ACPX-1698","EMP24 complex"],["GO%3A0030137","COPI-coated vesicle"],["GO%3A0005798","Golgi-associated vesicle"],["GO%3A0030140","trans-Golgi network transport vesicle"],["PANTHER%3APTHR31975","BUD SITE SELECTION PROTEIN 7-RELATED"],["PANTHER%3APTHR10261","COATOMER SUBUNIT GAMMA"]]},{"id":"GO:0033176","l":"proton-transporting V-type ATPase complex","na":1,"nb":8,"a":[["energy_complex/vacuolar_proton_transporting_v_type_atpase_complex.html","vacuolar proton-transporting V-type ATPase complex"]],"b":[["ComplexPortal%3ACPX-2470","Vacuolar proton translocating ATPase complex, ATP6V0A1 variant"],["ComplexPortal%3ACPX-6904","Vacuolar proton translocating ATPase complex, ATP6V0A2 variant"],["ComplexPortal%3ACPX-6905","Vacuolar proton translocating ATPase complex, ATP6V0A3 variant"],["ComplexPortal%3ACPX-6912","Vacuolar proton translocating ATPase complex, ATP6V0A4 variant"],["ComplexPortal%3ACPX-1192","Vacuolar proton translocating ATPase complex, Golgi variant"],["GO%3A0033181","plasma membrane proton-transporting V-type ATPase complex"]]},{"id":"GO:0098799","l":"outer mitochondrial membrane protein complex","na":1,"nb":8,"a":[["other/mitochondrial_outer_membrane_translocase_complex.html","mitochondrial outer membrane translocase complex"]],"b":[["ComplexPortal%3ACPX-3196","ERMES complex"],["ComplexPortal%3ACPX-6100","SARS-CoV-2 9b complex"],["ComplexPortal%3ACPX-6101","SARS-CoV 9b complex"],["GO%3A0036266","Cdc48p-Npl4p-Vms1p AAA ATPase complex"],["GO%3A0032865","ERMES complex"],["GO%3A0140595","MIM complex"]]},{"id":"NCBITaxon:1515","l":"Acetivibrio thermocellus","na":1,"nb":8,"a":[["other/cellulosome.html","cellulosome"]],"b":[["Pfam%3APF02927","Cellulase N-terminal ig-like domain"],["Pfam%3APF00404","Dockerin type I domain"],["PROSITE%3APS00448","Clostridium cellulosome enzymes repeated domain signature"],["PROSITE%3APS60032","Glycosyl hydrolases family 9 (GH9) active site signature 1"],["PROSITE%3APS00592","Glycosyl hydrolases family 9 (GH9) active site signature 2"],["PROSITE%3APS00698","Glycosyl hydrolases family 9 (GH9) active site signature 3"]]},{"id":"NCBITaxon:572477","l":"Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)","na":1,"nb":8,"a":[["inclusion/sulfur_globule.html","sulfur globule"]],"b":[["Pfam%3APF01322","Cytochrome C'"],["Pfam%3APF02635","DsrE/DsrF-like family"],["Pfam%3APF21706","Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain, central"],["Pfam%3APF09242","Flavocytochrome c sulphide dehydrogenase, flavin-binding"],["Pfam%3APF01355","High potential iron-sulfur protein"],["Pfam%3APF13686","DsrE/DsrF/DrsH-like family"]]},{"id":"UniProt:P05704","l":"","na":1,"nb":8,"a":[["other/methyl_accepting_chemotaxis_protein_complex.html","methyl accepting chemotaxis protein complex"]],"b":[["GO%3A0098561","methyl accepting chemotaxis protein complex"],["CDD%3Acd19407","Tar_Tsr_sensor"],["InterPro%3AIPR003122","Chemotaxis methyl-accepting receptor Tar-related, ligand-binding"],["Pfam%3APF02203","Tar ligand binding domain homologue"],["InterPro%3AIPR035440","Methyl-accepting chemotaxis protein, four helix bundle domain superfamily"],["PROSITE%3APS00538","Bacterial chemotaxis sensory transducers signature"]]},{"id":"UniProt:P07018","l":"","na":1,"nb":8,"a":[["other/methyl_accepting_chemotaxis_protein_complex.html","methyl accepting chemotaxis protein complex"]],"b":[["NCBIfam%3ANF007309","methyl-accepting chemotaxis protein IV"],["CDD%3Acd19407","Tar_Tsr_sensor"],["InterPro%3AIPR003122","Chemotaxis methyl-accepting receptor Tar-related, ligand-binding"],["Pfam%3APF02203","Tar ligand binding domain homologue"],["InterPro%3AIPR035440","Methyl-accepting chemotaxis protein, four helix bundle domain superfamily"],["PROSITE%3APS00538","Bacterial chemotaxis sensory transducers signature"]]},{"id":"UniProt:P0A7M6","l":"Large ribosomal subunit protein uL29","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR00012","50S ribosomal protein L29"],["InterPro%3AIPR018254","Large ribosomal subunit protein uL29, conserved site"],["CDD%3Acd00427","Ribosomal_L29_HIP"],["Pfam%3APF00831","Ribosomal L29 protein"],["InterPro%3AIPR036049","Large ribosomal subunit protein uL29 superfamily"]]},{"id":"UniProt:P0A7N9","l":"Large ribosomal subunit protein bL33","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ANF001860","50S ribosomal protein L33"],["NCBIfam%3ATIGR01023","50S ribosomal protein L33"],["InterPro%3AIPR018264","Large ribosomal subunit protein bL33, conserved site"],["Pfam%3APF00471","Ribosomal protein L33"],["InterPro%3AIPR038584","Large ribosomal subunit protein bL33 superfamily"]]},{"id":"UniProt:P0A7R9","l":"Small ribosomal subunit protein uS11","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ANF003698","30S ribosomal protein S11"],["NCBIfam%3ATIGR03632","30S ribosomal protein S11"],["InterPro%3AIPR018102","Small ribosomal subunit protein uS11, conserved site"],["Pfam%3APF00411","Ribosomal protein S11"],["InterPro%3AIPR036967","Small ribosomal subunit protein uS11 superfamily"]]},{"id":"UniProt:P0A7W1","l":"Small ribosomal subunit protein uS5","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ATIGR01021","30S ribosomal protein S5"],["InterPro%3AIPR018192","Small ribosomal subunit protein uS5, N-terminal, conserved site"],["InterPro%3AIPR005324","Small ribosomal subunit protein uS5, C-terminal"],["InterPro%3AIPR013810","Small ribosomal subunit protein uS5, N-terminal"],["Pfam%3APF03719","Ribosomal protein S5, C-terminal domain"]]},{"id":"UniProt:P0A7W7","l":"Small ribosomal subunit protein uS8","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ANF001109","30S ribosomal protein S8"],["InterPro%3AIPR047863","Small ribosomal subunit protein uS8, conserved site"],["Pfam%3APF00410","Ribosomal protein S8"],["InterPro%3AIPR035987","Small ribosomal subunit protein uS8 superfamily"],["PROSITE%3APS00053","Ribosomal protein S8 signature"]]},{"id":"UniProt:P0ABA0","l":"","na":1,"nb":8,"a":[["energy_complex/proton_transporting_atp_synthase_complex.html","proton-transporting ATP synthase complex"]],"b":[["ComplexPortal%3ACPX-4022","ATP synthase complex"],["NCBIfam%3ANF004411","F0F1 ATP synthase subunit B"],["NCBIfam%3ANF004413","F0F1 ATP synthase subunit B"],["NCBIfam%3ATIGR01144","F0F1 ATP synthase subunit B"],["CDD%3Acd06503","ATP-synt_Fo_b"],["Pfam%3APF00430","ATP synthase B/B' CF(0)"]]},{"id":"UniProt:P0ABA4","l":"","na":1,"nb":8,"a":[["energy_complex/proton_transporting_atp_synthase_complex.html","proton-transporting ATP synthase complex"]],"b":[["ComplexPortal%3ACPX-4022","ATP synthase complex"],["NCBIfam%3ATIGR01145","ATP synthase F1 subunit delta"],["NCBIfam%3ANF004402","F0F1 ATP synthase subunit delta"],["NCBIfam%3ANF004404","F0F1 ATP synthase subunit delta"],["InterPro%3AIPR020781","ATPase, OSCP/delta subunit, conserved site"],["Pfam%3APF00213","ATP synthase delta (OSCP) subunit"]]},{"id":"UniProt:P0ABG7","l":"","na":1,"nb":8,"a":[["division_machinery/elongasome.html","elongasome"]],"b":[["ComplexPortal%3ACPX-5718","Elongasome complex"],["GO%3A0015648","lipid-linked peptidoglycan transporter activity"],["GO%3A0031504","peptidoglycan-based cell wall organization"],["NCBIfam%3ANF008060","peptidoglycan glycosyltransferase MrdB"],["NCBIfam%3ATIGR02210","rod shape-determining protein RodA"],["InterPro%3AIPR018365","Cell cycle, FtsW / RodA / SpoVE, conserved site"]]},{"id":"UniProt:P0ABH0","l":"","na":1,"nb":8,"a":[["division_machinery/divisome_complex.html","divisome complex"]],"b":[["ComplexPortal%3ACPX-1936","Divisome complex"],["NCBIfam%3ANF007009","cell division protein FtsA"],["NCBIfam%3ATIGR01174","cell division protein FtsA"],["CDD%3Acd24048","ASKHA_NBD_FtsA"],["InterPro%3AIPR003494","SHS2 domain inserted in FtsA"],["Pfam%3APF14450","Cell division protein FtsA"]]},{"id":"UniProt:P0ADY3","l":"Large ribosomal subunit protein uL14","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR01067","50S ribosomal protein L14"],["InterPro%3AIPR019972","Large ribosomal subunit protein uL14, conserved site"],["CDD%3Acd00337","Ribosomal_uL14"],["Pfam%3APF00238","Ribosomal protein L14p/L23e"],["InterPro%3AIPR036853","Large ribosomal subunit protein uL14 superfamily"]]},{"id":"UniProt:P0AG51","l":"Large ribosomal subunit protein uL30","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR01308","50S ribosomal protein L30"],["InterPro%3AIPR018038","Large ribosomal subunit protein uL30, conserved site"],["CDD%3Acd01658","Ribosomal_L30"],["InterPro%3AIPR016082","Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain"],["Pfam%3APF00327","Ribosomal protein L30p/L7e"]]},{"id":"UniProt:P0AG55","l":"Large ribosomal subunit protein uL6","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR03654","50S ribosomal protein L6"],["InterPro%3AIPR002358","Large ribosomal subunit protein uL6, conserved site"],["InterPro%3AIPR020040","Large ribosomal subunit protein uL6, alpha-beta domain"],["Pfam%3APF00347","Ribosomal protein L6"],["InterPro%3AIPR036789","Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily"]]},{"id":"UniProt:P16926","l":"","na":1,"nb":8,"a":[["division_machinery/elongasome.html","elongasome"]],"b":[["ComplexPortal%3ACPX-5718","Elongasome complex"],["NCBIfam%3ATIGR00219","rod shape-determining protein MreC"],["InterPro%3AIPR055342","Rod shape-determining protein MreC, beta-barrel core"],["Pfam%3APF04085","Rod shape-determining protein MreC, barrel core"],["InterPro%3AIPR042177","Cell/Rod shape-determining protein MreC, domain 1"],["InterPro%3AIPR042175","Cell/Rod shape-determining protein MreC, domain 2"]]},{"id":"UniProt:P60624","l":"Large ribosomal subunit protein uL24","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR01079","50S ribosomal protein L24"],["InterPro%3AIPR005825","Large ribosomal subunit protein uL24, conserved site"],["CDD%3Acd06089","KOW_RPL26"],["InterPro%3AIPR057264","Large ribosomal subunit protein uL24, C-terminal domain"],["InterPro%3AIPR041988","Large ribosomal subunit protein uL24, KOW domain"]]},{"id":"UniProt:P68919","l":"Large ribosomal subunit protein bL25","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ANF004612","50S ribosomal protein L25"],["CDD%3Acd00495","Ribosomal_L25_TL5_CTC"],["InterPro%3AIPR029751","Large ribosomal subunit protein bL25, L25 domain"],["Pfam%3APF01386","Ribosomal L25p family"],["InterPro%3AIPR011035","Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily"]]},{"id":"GO:0030479","l":"actin cortical patch","na":1,"nb":7,"a":[["cytoskeleton/actin_cortical_patch.html","actin cortical patch"]],"b":[["ComplexPortal%3ACPX-3541","AIM21-TDA2 actin assembly regulator complex"],["ComplexPortal%3ACPX-1500","Myosin class I complex, MYO3 variant"],["ComplexPortal%3ACPX-1470","Myosin class I complex, MYO5 variant"],["ComplexPortal%3ACPX-1335","RVS161-RVS167 amphiphysin complex"],["GO%3A0030479","actin cortical patch"],["PANTHER%3APTHR47789","LAS SEVENTEEN-BINDING PROTEIN 5"]]},{"id":"GO:0032156","l":"septin cytoskeleton","na":1,"nb":7,"a":[["cytoskeleton/septin_ring.html","septin ring"]],"b":[["GO%3A0150050","postsynaptic septin cytoskeleton"],["GO%3A0032159","septin cap"],["GO%3A0032173","septin collar"],["GO%3A0032156","septin cytoskeleton"],["GO%3A0032160","septin filament array"],["GO%3A0005940","septin ring"]]},{"id":"GO:0033115","l":"cyanelle thylakoid membrane","na":7,"nb":1,"a":[["membrane_organelle/cyanelle.html","cyanelle"],["membrane_organelle/cyanelle_membrane.html","cyanelle membrane"],["membrane_organelle/cyanelle_stroma.html","cyanelle stroma"],["membrane_organelle/cyanelle_thylakoid.html","cyanelle thylakoid"],["membrane_organelle/cyanelle_thylakoid_lumen.html","cyanelle thylakoid lumen"],["membrane_organelle/cyanelle_thylakoid_membrane.html","cyanelle thylakoid membrane"]],"b":[["GO%3A0033115","cyanelle thylakoid membrane"]]},{"id":"GO:0033179","l":"proton-transporting V-type ATPase, V0 domain","na":1,"nb":7,"a":[["energy_complex/vacuolar_proton_transporting_v_type_atpase_v0_domain.html","vacuolar proton-transporting V-type ATPase, V0 domain"]],"b":[["GO%3A0000222","plasma membrane proton-transporting V-type ATPase, V0 domain"],["GO%3A0033179","proton-transporting V-type ATPase, V0 domain"],["GO%3A0000220","vacuolar proton-transporting V-type ATPase, V0 domain"],["NCBIfam%3ATIGR02923","ATP synthase A1 subunit C"],["NCBIfam%3ANF013647","V-type ATPase 116kDa subunit family protein"],["Pfam%3APF05493","ATP synthase subunit H"]]},{"id":"GO:0043953","l":"protein transport by the Tat complex","na":1,"nb":7,"a":[["secretion_system/tat_protein_transport_complex.html","TAT protein transport complex"]],"b":[["ComplexPortal%3ACPX-3445","Twin-arginine translocation complex"],["GO%3A0043953","protein transport by the Tat complex"],["NCBIfam%3ANF001854","Sec-independent protein translocase subunit TatA"],["NCBIfam%3ANF002813","Sec-independent protein translocase subunit TatA"],["NCBIfam%3ATIGR01912","Sec-independent protein translocase TatC"],["NCBIfam%3ANF001940","twin-arginine translocase TatA/TatE family subunit"]]},{"id":"GO:0044284","l":"mitochondrial crista junction","na":1,"nb":7,"a":[["membrane_organelle/mitochondrial_crista.html","mitochondrial crista"]],"b":[["ComplexPortal%3ACPX-140","MICOS mitochondrial contact site and cristae organizing system complex"],["ComplexPortal%3ACPX-25732","MICOS mitochondrial contact site and cristae organizing system complex, MIC10A variant"],["ComplexPortal%3ACPX-25733","MICOS mitochondrial contact site and cristae organizing system complex, MIC10B variant"],["ComplexPortal%3ACPX-25735","MICOS mitochondrial contact site and cristae organizing system complex, MIC10C variant"],["ComplexPortal%3ACPX-6141","MICOS mitochondrial contact site and cristae organizing system complex"],["GO%3A0044284","mitochondrial crista junction"]]},{"id":"GO:0097597","l":"ventral disc","na":7,"nb":1,"a":[["cytoskeleton/ventral_disc.html","ventral disc"],["cytoskeleton/ventral_disc_crossbridge.html","ventral disc crossbridge"],["cytoskeleton/ventral_disc_dorsal_microribbon.html","ventral disc dorsal microribbon"],["cytoskeleton/ventral_disc_lateral_crest.html","ventral disc lateral crest"],["cytoskeleton/ventral_disc_microtubule_array.html","ventral disc microtubule array"],["cytoskeleton/ventral_disc_overlap_zone.html","ventral disc overlap zone"]],"b":[["GO%3A0097597","ventral disc"]]},{"id":"InterPro:IPR001119","l":"S-layer homology domain","na":1,"nb":7,"a":[["envelope/s_layer.html","S-layer"]],"b":[["InterPro%3AIPR011459","Domain of unknown function DUF1565"],["InterPro%3AIPR001119","S-layer homology domain"],["Pfam%3APF13205","Bacterial Ig-like domain"],["Pfam%3APF03424","Carbohydrate binding domain (family 17/28)"],["Pfam%3APF06452","Carbohydrate family 9 binding domain-like"],["Pfam%3APF07602","Protein of unknown function (DUF1565)"]]},{"id":"NCBITaxon:837","l":"Porphyromonas gingivalis","na":1,"nb":7,"a":[["secretion_system/type_ix_protein_secretion_system_complex.html","type IX protein secretion system complex"]],"b":[["Pfam%3APF07675","Cleaved Adhesin Domain"],["Pfam%3APF22492","FimA4 pilin C-terminal domain"],["Pfam%3APF15495","Major fimbrial subunit protein type IV, Fimbrillin, C-terminal"],["Pfam%3APF26306","FimD protein third domain"],["Pfam%3APF27397","FimE C-terminal domain"],["Pfam%3APF10365","Domain of unknown function (DUF2436)"]]},{"id":"Pfam:PF04728","l":"Lipoprotein leucine-zipper","na":1,"nb":7,"a":[["envelope/gram_negative_bacterium_type_cell_wall.html","Gram-negative-bacterium-type cell wall"]],"b":[["GO%3A0043580","periplasmic space organization"],["NCBIfam%3ANF007428","lipoprotein YqhH"],["NCBIfam%3ANF040598","Lpp/OprI family alanine-zipper lipoprotein"],["NCBIfam%3ANF011925","major outer membrane lipoprotein"],["InterPro%3AIPR006817","Lipoprotein leucine-zipper"],["Pfam%3APF04728","Lipoprotein leucine-zipper"]]},{"id":"UniProt:P0A7K6","l":"Large ribosomal subunit protein bL19","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR01024","50S ribosomal protein L19"],["InterPro%3AIPR018257","Large ribosomal subunit protein bL19, conserved site"],["Pfam%3APF01245","Ribosomal protein L19"],["InterPro%3AIPR038657","Large ribosomal subunit protein bL19 superfamily"],["PROSITE%3APS01015","Ribosomal protein L19 signature"]]},{"id":"UniProt:P0A7N1","l":"Large ribosomal subunit protein bL31B","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR00105","50S ribosomal protein L31"],["NCBIfam%3ANF002462","type B 50S ribosomal protein L31"],["Pfam%3APF01197","Ribosomal protein L31"],["InterPro%3AIPR042105","Large ribosomal subunit protein bL31 superfamily"],["PROSITE%3APS01143","Ribosomal protein L31 signature"]]},{"id":"UniProt:P0A7Q1","l":"Large ribosomal subunit protein bL35","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR00001","50S ribosomal protein L35"],["InterPro%3AIPR018265","Large ribosomal subunit protein bL35, conserved site"],["Pfam%3APF01632","Ribosomal protein L35"],["InterPro%3AIPR037229","Large ribosomal subunit protein bL35 superfamily"],["PROSITE%3APS00936","Ribosomal protein L35 signature"]]},{"id":"UniProt:P0A7T3","l":"Small ribosomal subunit protein bS16","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ATIGR00002","30S ribosomal protein S16"],["InterPro%3AIPR020592","Small ribosomal subunit protein bS16, conserved site"],["Pfam%3APF00886","Ribosomal protein S16"],["InterPro%3AIPR023803","Small ribosomal subunit protein bS16 domain superfamily"],["PROSITE%3APS00732","Ribosomal protein S16 signature"]]},{"id":"UniProt:P0A7T7","l":"Small ribosomal subunit protein bS18","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ATIGR00165","30S ribosomal protein S18"],["InterPro%3AIPR018275","Small ribosomal subunit protein bS18, conserved site"],["Pfam%3APF01084","Ribosomal protein S18"],["InterPro%3AIPR036870","Small ribosomal subunit protein bS18 superfamily"],["PROSITE%3APS00057","Ribosomal protein S18 signature"]]},{"id":"UniProt:P0A7U3","l":"Small ribosomal subunit protein uS19","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ATIGR01050","30S ribosomal protein S19"],["InterPro%3AIPR020934","Small ribosomal subunit protein uS19, conserved site"],["Pfam%3APF00203","Ribosomal protein S19"],["InterPro%3AIPR023575","Small ribosomal subunit protein uS19, superfamily"],["PROSITE%3APS00323","Ribosomal protein S19 signature"]]},{"id":"UniProt:P0A7U7","l":"Small ribosomal subunit protein bS20","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["GO%3A0008073","ornithine decarboxylase inhibitor activity"],["GO%3A0070181","small ribosomal subunit rRNA binding"],["NCBIfam%3ATIGR00029","30S ribosomal protein S20"],["Pfam%3APF01649","Ribosomal protein S20"],["InterPro%3AIPR036510","Small ribosomal subunit protein bS20 superfamily"]]},{"id":"UniProt:P0A9A6","l":"","na":1,"nb":7,"a":[["division_machinery/divisome_complex.html","divisome complex"]],"b":[["ComplexPortal%3ACPX-1936","Divisome complex"],["NCBIfam%3ATIGR00065","cell division protein FtsZ"],["InterPro%3AIPR020805","Cell division protein FtsZ, conserved site"],["CDD%3Acd02201","FtsZ_type1"],["InterPro%3AIPR024757","Cell division protein FtsZ, C-terminal"],["PROSITE%3APS01134","FtsZ protein signature 1"]]},{"id":"UniProt:P0AG44","l":"Large ribosomal subunit protein bL17","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR00059","50S ribosomal protein L17"],["InterPro%3AIPR047859","Large ribosomal subunit protein bL17, conserved site"],["Pfam%3APF01196","Ribosomal protein L17"],["InterPro%3AIPR036373","Large ribosomal subunit protein bL17 superfamily"],["PROSITE%3APS01167","Ribosomal protein L17 signature"]]},{"id":"UniProt:P0AG63","l":"Small ribosomal subunit protein uS17","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ANF004123","30S ribosomal protein S17"],["NCBIfam%3ATIGR03635","30S ribosomal protein S17"],["InterPro%3AIPR019979","Small ribosomal subunit protein uS17, conserved site"],["CDD%3Acd00364","Ribosomal_uS17"],["Pfam%3APF00366","Ribosomal protein S17"]]},{"id":"UniProt:P23447","l":"","na":1,"nb":7,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"]],"b":[["GO%3A0009431","bacterial-type flagellum basal body, MS ring"],["NCBIfam%3ATIGR00206","flagellar basal-body MS-ring/collar protein FliF"],["InterPro%3AIPR013556","Flagellar M-ring C-terminal"],["InterPro%3AIPR006182","Flagellar M-ring, N-terminal"],["Pfam%3APF08345","Flagellar M-ring protein C-terminal"],["Pfam%3APF01514","Secretory protein of YscJ/FliF RBM domain"]]},{"id":"UniProt:P28611","l":"","na":1,"nb":7,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"]],"b":[["NCBIfam%3ANF005997","flagellar motor stator protein MotA"],["InterPro%3AIPR000540","Flagellar motor protein MotA, conserved site"],["InterPro%3AIPR002898","MotA/TolQ/ExbB proton channel"],["InterPro%3AIPR046786","Motility protein A, N-terminal"],["Pfam%3APF20560","Motility protein A N-terminal"],["Pfam%3APF01618","MotA/TolQ/ExbB proton channel family"]]},{"id":"UniProt:P68679","l":"Small ribosomal subunit protein bS21","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ATIGR00030","30S ribosomal protein S21"],["InterPro%3AIPR018278","Small ribosomal subunit protein bS21, conserved site"],["Pfam%3APF01165","Ribosomal protein S21"],["InterPro%3AIPR038380","Small ribosomal subunit protein bS21 superfamily"],["PROSITE%3APS01181","Ribosomal protein S21 signature"]]},{"id":"UniProt:P77173","l":"","na":1,"nb":7,"a":[["division_machinery/divisome_complex.html","divisome complex"]],"b":[["ComplexPortal%3ACPX-1936","Divisome complex"],["NCBIfam%3ATIGR02205","cell division protein ZipA"],["CDD%3Acd00231","ZipA"],["InterPro%3AIPR007449","ZipA, C-terminal FtsZ-binding domain"],["Pfam%3APF04354","ZipA, C-terminal FtsZ-binding 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II secretion system major pseudopilin GspG"],["NCBIfam%3ATIGR01708","type II secretion system minor pseudopilin GspH"],["NCBIfam%3ATIGR01707","type II secretion system minor pseudopilin GspI"]]},{"id":"GO:0005885","l":"Arp2/3 protein complex","na":1,"nb":25,"a":[["cytoskeleton/actin_cortical_patch.html","actin cortical patch"]],"b":[["ComplexPortal%3ACPX-2586","Actin-related protein 2/3 complex, ARPC1A-ACTR3-ARPC5 variant"],["ComplexPortal%3ACPX-2592","Actin-related protein 2/3 complex, ARPC1A-ACTR3-ARPC5L variant"],["ComplexPortal%3ACPX-2490","Actin-related protein 2/3 complex, ARPC1A-ACTR3B-ARPC5 variant"],["ComplexPortal%3ACPX-2579","Actin-related protein 2/3 complex, ARPC1B-ACTR3-ARPC5 variant"],["ComplexPortal%3ACPX-2663","Actin-related protein 2/3 complex, ARPC1B-ACTR3-ARPC5L variant"],["ComplexPortal%3ACPX-2583","Actin-related protein 2/3 complex, ARPC1B-ACTR3B-ARPC5 variant"]]},{"id":"GO:0005618","l":"cell wall","na":1,"nb":24,"a":[["envelope/fungal_type_cell_wall.html","fungal-type cell wall"]],"b":[["GO%3A0005618","cell wall"],["GO%3A0097570","cyst wall"],["GO%3A0009277","fungal-type cell wall"],["GO%3A0009274","peptidoglycan-based cell wall"],["GO%3A0009505","plant-type cell wall"],["GO%3A0031160","spore wall"]]},{"id":"GO:0006893","l":"Golgi to plasma membrane transport","na":1,"nb":24,"a":[["other/exomer_complex.html","exomer complex"]],"b":[["ComplexPortal%3ACPX-1719","Exomer complex"],["ComplexPortal%3ACPX-26504","Exomer complex"],["ComplexPortal%3ACPX-1365","Vesicular SNARE complex SSO1-SEC9-SNC1"],["ComplexPortal%3ACPX-5463","Vesicular SNARE complex SSO1-SEC9-SNC2"],["ComplexPortal%3ACPX-1369","Vesicular SNARE complex SSO2-SEC9-SNC1"],["ComplexPortal%3ACPX-5465","Vesicular SNARE complex SSO2-SEC9-SNC2"]]},{"id":"GO:0031968","l":"organelle outer membrane","na":1,"nb":24,"a":[["membrane_organelle/mitochondrial_outer_membrane.html","mitochondrial outer membrane"]],"b":[["GO%3A0009535","chloroplast thylakoid membrane"],["GO%3A0005741","mitochondrial outer membrane"],["GO%3A0005640","nuclear outer membrane"],["GO%3A0031968","organelle outer membrane"],["GO%3A0009527","plastid outer membrane"],["PANTHER%3APTHR37278","AUTOPHAGY-RELATED PROTEIN 33-RELATED"]]},{"id":"GO:0072686","l":"mitotic spindle","na":1,"nb":24,"a":[["cytoskeleton/mitotic_spindle.html","mitotic spindle"]],"b":[["ComplexPortal%3ACPX-1041","DASH complex"],["ComplexPortal%3ACPX-4027","gpr-1-gpr-2-lin-5 complex"],["GO%3A0072686","mitotic spindle"],["PANTHER%3APTHR46930","CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 2"],["PANTHER%3APTHR47078","CYTOSKELETON-ASSOCIATED PROTEIN 2-LIKE"],["PANTHER%3APTHR28036","DASH COMPLEX SUBUNIT DAD2"]]},{"id":"GO:0097729","l":"9+2 motile cilium","na":1,"nb":23,"a":[["appendage/paraflagellar_rod.html","paraflagellar rod"]],"b":[["ComplexPortal%3ACPX-8161","Radial spoke complex, ciliiar variant"],["ComplexPortal%3ACPX-8163","Radial spoke 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progression"],["GO%3A0048219","inter-Golgi cisterna vesicle-mediated transport"],["GO%3A0006891","intra-Golgi vesicle-mediated transport"],["GO%3A0000301","retrograde transport, vesicle recycling within Golgi"],["InterPro%3AIPR012955","CASP, C-terminal"]]},{"id":"CHEBI:29108","l":"calcium(2+)","na":1,"nb":21,"a":[["membrane_organelle/trichocyst.html","trichocyst"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_29108","requires calcium(2+)"],["EC%3A1.13.12.24","calcium-regulated photoprotein"],["EC%3A7.2.2.10","P-type Ca(2+) transporter"],["RHEA%3A72631","3 Li(+)(out) + Ca(2+)(in) = 3 Li(+)(in) + Ca(2+)(out)"],["RHEA%3A55884","[aequorin] + 3 Ca(2+) = [aequorin]--dioxetanone"],["RHEA%3A55888","[aequorin]--dioxetanone = excited state-[aequorin] + CO2"]]},{"id":"GO:0042729","l":"DASH complex","na":1,"nb":21,"a":[["other/dash_complex.html","DASH complex"]],"b":[["ComplexPortal%3ACPX-10081","DASH complex"],["ComplexPortal%3ACPX-1041","DASH complex"],["GO%3A0042729","DASH 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57"]]},{"id":"GO:0000178","l":"exosome (RNase complex)","na":1,"nb":19,"a":[["ribonucleoprotein/exosome_rnase_complex.html","exosome (RNase complex)"]],"b":[["ComplexPortal%3ACPX-603","Cytoplasmic exosome complex, DIS3 variant"],["ComplexPortal%3ACPX-2596","Cytoplasmic exosome"],["ComplexPortal%3ACPX-593","Exosome complex, DIS3 variant"],["ComplexPortal%3ACPX-598","Exosome complex, Dis3 variant"],["ComplexPortal%3ACPX-2595","Nuclear exosome"],["ComplexPortal%3ACPX-599","Nuclear/nucleolar exosome complex, DIS3-RRP6 variant"]]},{"id":"GO:0044232","l":"organelle membrane contact site","na":1,"nb":19,"a":[["membrane_organelle/mitochondrial_crista_junction.html","mitochondrial crista junction"]],"b":[["GO%3A0140284","endoplasmic reticulum-endosome membrane contact site"],["GO%3A0140268","endoplasmic reticulum-plasma membrane contact site"],["GO%3A0160258","endoplasmic reticulum-trans-Golgi network membrane contact site"],["GO%3A0098853","endoplasmic reticulum-vacuole membrane contact site"],["GO%3A0044233","mitochondria-associated endoplasmic reticulum membrane contact site"],["GO%3A0044284","mitochondrial crista junction"]]},{"id":"GO:0099512","l":"supramolecular fiber","na":1,"nb":19,"a":[["cytoskeleton/cytoophidium.html","cytoophidium"]],"b":[["GO%3A0098647","collagen beaded filament"],["GO%3A0043292","contractile muscle fiber"],["GO%3A0097268","cytoophidium"],["GO%3A0071953","elastic fiber"],["GO%3A0061800","fibronectin fibril"],["GO%3A0061836","intranuclear rod"]]},{"id":"NCBITaxon:330779","l":"Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)","na":1,"nb":19,"a":[["appendage/archaeal_type_flagellum.html","archaeal-type flagellum"]],"b":[["Pfam%3APF12846","AAA-like domain"],["Pfam%3APF27338","Cytochrome b558/566 subunit B"],["Pfam%3APF18822","CdvA-like coiled-coil domain"],["Pfam%3APF27303","Cell division protein CdvB, C-terminal HTH domain"],["Pfam%3APF27251","DNA import protein CedA1"],["Pfam%3APF18533","Domain of unknown function (DUF5622)"]]},{"id":"UniProt:P02942","l":"","na":1,"nb":19,"a":[["other/methyl_accepting_chemotaxis_protein_complex.html","methyl accepting chemotaxis protein complex"]],"b":[["GO%3A0098561","methyl accepting chemotaxis protein complex"],["GO%3A0009593","detection of chemical stimulus"],["GO%3A1902021","regulation of bacterial-type flagellum-dependent cell motility"],["NCBIfam%3ANF011615","methyl-accepting chemotaxis protein"],["CDD%3Acd06225","HAMP"],["CDD%3Acd19407","Tar_Tsr_sensor"]]},{"id":"UniProt:P07017","l":"","na":1,"nb":19,"a":[["other/methyl_accepting_chemotaxis_protein_complex.html","methyl accepting chemotaxis protein complex"]],"b":[["GO%3A0098561","methyl accepting chemotaxis protein complex"],["GO%3A0043424","protein histidine kinase binding"],["GO%3A0009593","detection of chemical stimulus"],["NCBIfam%3ANF011622","methyl-accepting chemotaxis protein II"],["CDD%3Acd06225","HAMP"],["CDD%3Acd19407","Tar_Tsr_sensor"]]},{"id":"UniProt:P60723","l":"Large ribosomal subunit protein uL4","na":1,"nb":19,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["GO%3A0022625","cytosolic large ribosomal subunit"],["GO%3A0015934","large ribosomal subunit"],["GO%3A0060698","endoribonuclease inhibitor activity"],["GO%3A0048027","mRNA 5'-UTR binding"],["GO%3A0001070","RNA-binding transcription regulator activity"]]},{"id":"CHEBI:16838","l":"polyphosphate","na":1,"nb":18,"a":[["membrane_organelle/acidocalcisome.html","acidocalcisome"]],"b":[["EC%3A2.7.1.63","polyphosphate--glucose phosphotransferase"],["EC%3A2.7.4.1","ATP-polyphosphate phosphotransferase"],["EC%3A2.7.4.17","3-phosphoglyceroyl-phosphate--polyphosphate phosphotransferase"],["EC%3A2.7.4.20","dolichyl-diphosphate--polyphosphate phosphotransferase"],["EC%3A2.7.4.33","AMP-polyphosphate phosphotransferase"],["EC%3A2.7.4.34","GDP-polyphosphate phosphotransferase"]]},{"id":"GO:0005876","l":"spindle microtubule","na":1,"nb":18,"a":[["cytoskeleton/mitotic_spindle.html","mitotic spindle"]],"b":[["GO%3A0000235","astral microtubule"],["GO%3A0005828","kinetochore microtubule"],["GO%3A1990498","mitotic spindle microtubule"],["GO%3A0005827","polar microtubule"],["GO%3A0005876","spindle microtubule"],["PANTHER%3APTHR46725","COILED-COIL DOMAIN-CONTAINING PROTEIN 57"]]},{"id":"GO:0030257","l":"type III protein secretion system complex","na":1,"nb":18,"a":[["secretion_system/type_iii_protein_secretion_system_complex.html","type III protein secretion system complex"]],"b":[["ComplexPortal%3ACPX-5885","Flagellar export complex"],["GO%3A0030257","type III protein secretion system complex"],["NCBIfam%3ANF006290","flagellar protein export ATPase FliI"],["NCBIfam%3ATIGR03498","flagellar protein export ATPase FliI"],["NCBIfam%3ATIGR01026","FliI/YscN family ATPase"],["NCBIfam%3ATIGR02554","PrgH/EprH family type III secretion apparatus protein"]]},{"id":"GO:0031253","l":"cell projection membrane","na":1,"nb":18,"a":[["appendage/ciliary_membrane.html","ciliary membrane"]],"b":[["GO%3A0031526","brush border membrane"],["GO%3A0031253","cell projection membrane"],["GO%3A0060170","ciliary membrane"],["GO%3A0031527","filopodium membrane"],["GO%3A0031258","lamellipodium membrane"],["GO%3A0070686","macropinocytic cup membrane"]]},{"id":"GO:0031982","l":"vesicle","na":1,"nb":18,"a":[["membrane_organelle/cytoplasmic_vesicle.html","cytoplasmic vesicle"]],"b":[["GO%3A1903561","extracellular vesicle"],["GO%3A0097708","intracellular vesicle"],["GO%3A0031982","vesicle"],["PANTHER%3APTHR47395","BPI FOLD-CONTAINING FAMILY B MEMBER 1"],["PANTHER%3APTHR15152","CD70 ANTIGEN"],["PANTHER%3APTHR44314","CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 70"]]},{"id":"GO:0045048","l":"protein insertion into ER membrane","na":1,"nb":18,"a":[["other/emc_complex.html","EMC complex"]],"b":[["ComplexPortal%3ACPX-6464","GET complex"],["ComplexPortal%3ACPX-956","GET complex"],["ComplexPortal%3ACPX-7020","PAT intramembrane chaperone complex"],["GO%3A0160063","multi-pass transmembrane protein insertion into ER membrane"],["GO%3A0045051","protein insertion into ER membrane by internal uncleaved signal-anchor sequence"],["GO%3A0045049","protein insertion into ER membrane by N-terminal cleaved signal sequence"]]},{"id":"GO:0140737","l":"encapsulin nanocompartment","na":1,"nb":18,"a":[["microcompartment/encapsulin_nanocompartment.html","encapsulin nanocompartment"]],"b":[["GO%3A0140737","encapsulin nanocompartment"],["NCBIfam%3ATIGR04535","encapsulin-associated ferritin-like protein"],["NCBIfam%3ANF058680","encapsulin nanocompartment cargo ferric reductase EncD"],["NCBIfam%3ANF058678","encapsulin nanocompartment ferritin-like cargo protein EncB"],["NCBIfam%3ANF058679","encapsulin nanocompartment ferritin-likeEncB family encapsulin nanocompartment ferritin-like cargo protein cargo protein"],["NCBIfam%3ANF041155","family 1 encapsulin nanocompartment shell protein"]]},{"id":"GO:0160303","l":"protein secretion by the type IX secretion system","na":1,"nb":18,"a":[["secretion_system/type_ix_protein_secretion_system_complex.html","type IX protein secretion system complex"]],"b":[["GO%3A0160303","protein secretion by the type IX secretion system"],["NCBIfam%3ANF052230","PorE family type IX secretion system protein"],["NCBIfam%3ATIGR03519","PorP/SprF family type IX secretion system membrane protein"],["NCBIfam%3ANF052314","PorY family sensor histidine kinase"],["NCBIfam%3ATIGR04189","T9SS outer membrane translocon Sov/SprA"],["NCBIfam%3ANF052313","T9SS response regulator signal transducer PorX"]]},{"id":"UniProt:P24073","l":"","na":1,"nb":18,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"]],"b":[["EC%3A3.-.-.-","Hydrolases"],["GO%3A0009425","bacterial-type flagellum basal body"],["GO%3A0003774","cytoskeletal motor activity"],["GO%3A0044780","bacterial-type flagellum assembly"],["GO%3A0071978","bacterial-type flagellum-dependent swarming motility"],["GO%3A0016311","dephosphorylation"]]},{"id":"GO:0000407","l":"phagophore assembly site","na":1,"nb":17,"a":[["other/phagophore_assembly_site.html","phagophore assembly site"]],"b":[["ComplexPortal%3ACPX-1383","TRAPPIII protein complex"],["ComplexPortal%3ACPX-373","ULK1-ATG13-RB1CC1-ATG101 autophagy initiation complex"],["ComplexPortal%3ACPX-380","ULK1-ATG13-RB1CC1-ATG101 autophagy initiation complex"],["GO%3A0000407","phagophore assembly site"],["PANTHER%3APTHR13038","APG9 AUTOPHAGY 9"],["PANTHER%3APTHR13385","AUTOPHAGY PROTEIN 12"]]},{"id":"GO:0030863","l":"cortical cytoskeleton","na":1,"nb":17,"a":[["cytoskeleton/eisosome_filament.html","eisosome filament"]],"b":[["ComplexPortal%3ACPX-658","Actin junctional complex"],["GO%3A0030864","cortical actin cytoskeleton"],["GO%3A0030863","cortical cytoskeleton"],["GO%3A0030981","cortical microtubule cytoskeleton"],["GO%3A0048788","cytoskeleton of presynaptic active zone"],["PANTHER%3APTHR15012","APICAL PROTEIN/SHROOM-RELATED"]]},{"id":"GO:0033103","l":"protein secretion by the type VI secretion system","na":1,"nb":17,"a":[["secretion_system/type_vi_protein_secretion_system_complex.html","type VI protein secretion system complex"]],"b":[["GO%3A0033103","protein secretion by the type VI secretion system"],["NCBIfam%3ATIGR03354","type VI secretion system-associated FHA domain protein TagH"],["NCBIfam%3ATIGR03345","type VI secretion system ATPase TssH"],["NCBIfam%3ATIGR03357","type VI secretion system baseplate subunit TssE"],["NCBIfam%3ATIGR03359","type VI secretion system baseplate subunit TssF"],["NCBIfam%3ATIGR03347","type VI secretion system baseplate subunit TssG"]]},{"id":"GO:0072546","l":"EMC complex","na":1,"nb":17,"a":[["other/emc_complex.html","EMC complex"]],"b":[["ComplexPortal%3ACPX-307","Endoplasmic Reticulum Membrane Complex"],["ComplexPortal%3ACPX-2445","Endoplasmic reticulum membrane complex, EMC2A variant"],["ComplexPortal%3ACPX-2451","Endoplasmic reticulum membrane complex, EMC2B variant"],["ComplexPortal%3ACPX-5848","Endoplasmic reticulum membrane complex, EMC8 variant"],["ComplexPortal%3ACPX-5882","Endoplasmic reticulum membrane complex, EMC8 variant"],["ComplexPortal%3ACPX-5881","Endoplasmic reticulum membrane complex, EMC9 variant"]]},{"id":"GO:1905369","l":"endopeptidase complex","na":1,"nb":17,"a":[["other/proteasome_complex.html","proteasome complex"]],"b":[["ComplexPortal%3ACPX-3905","Caspase-2 PIDDosome"],["ComplexPortal%3ACPX-3963","Caspase-2 PIDDosome"],["ComplexPortal%3ACPX-5777","MERS-CoV main protease complex"],["ComplexPortal%3ACPX-5685","SARS-CoV-2 main protease complex"],["ComplexPortal%3ACPX-5706","SARS-CoV main protease complex"],["GO%3A0008303","caspase complex"]]},{"id":"NCBITaxon:208963","l":"Pseudomonas aeruginosa (strain UCBPP-PA14)","na":1,"nb":17,"a":[["inclusion/r_body.html","R-body"]],"b":[["IDPO%3A0000031","flexible C-terminal tail"],["IDPO%3A0000032","flexible N-terminal tail"],["Pfam%3APF21384","CRISPR-associated nuclease/helicase Cas3, I-F/YPEST, Cas2 domain"],["Pfam%3APF21802","CRISPR-associated Cas3 subtype I-F/YPEST-like, C-terminal domain"],["Pfam%3APF20975","DGC-associated coil"],["Pfam%3APF19502","Nucleotidyltransferase of unknown function (DUF6036)"]]},{"id":"NCBITaxon:5888","l":"Paramecium tetraurelia","na":1,"nb":17,"a":[["membrane_organelle/trichocyst.html","trichocyst"]],"b":[["Pfam%3APF14926","Cilia- and flagella-associated protein 300"],["TED%3AAF-A0C038-F1-model_v4_TED07","TED highly-symmetric fold AF-A0C038-F1-model_v4_TED07"],["TED%3AAF-A0CFS1-F1-model_v4_TED02","TED highly-symmetric fold AF-A0CFS1-F1-model_v4_TED02"],["TED%3AAF-A0CHQ8-F1-model_v4_TED01","TED highly-symmetric fold AF-A0CHQ8-F1-model_v4_TED01"],["TED%3AAF-A0CHQ8-F1-model_v4_TED02","TED highly-symmetric fold AF-A0CHQ8-F1-model_v4_TED02"],["TED%3AAF-A0CHR9-F1-model_v4_TED02","TED highly-symmetric fold AF-A0CHR9-F1-model_v4_TED02"]]},{"id":"Pfam:PF01584","l":"CheW-like 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external encapsulating structure"]],"b":[["EC%3A3.6.1.-","In phosphorus-containing anhydrides"],["GO%3A0043595","endospore cortex"],["GO%3A0042601","endospore-forming forespore"],["GO%3A0031160","spore wall"],["GO%3A0000270","peptidoglycan metabolic process"],["GO%3A0009847","spore germination"]]},{"id":"CHEBI:16247","l":"","na":1,"nb":16,"a":[["inclusion/monolayer_surrounded_lipid_storage_body_outer_lipid_monolayer.html","monolayer-surrounded lipid storage body outer lipid monolayer"]],"b":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A9.A.79","The Autophagosomal Phospholipid Transmembrane Translocase (Atg9) Family"],["TCDB%3A9.A.36","The Ca2+-dependent Phospholipid Scramblase (Scramblase) Family"],["TCDB%3A1.A.17","The Calcium-dependent Chloride Channel (Ca-ClC) Family"],["TCDB%3A9.B.27","The Death Effector Domain A (DedA) Family"],["TCDB%3A8.A.97","The EPG-3/VMP1 (EPG/VPM) Scramblase Family"]]},{"id":"DOI:10.1128/ecosalplus.ESP-0034-2018","l":"","na":1,"nb":16,"a":[["secretion_system/type_ii_protein_secretion_system_complex.html","type II protein secretion system complex"]],"b":[["NCBIfam%3ANF037978","type II secretion system assembly factor GspB"],["NCBIfam%3ATIGR02533","type II secretion system ATPase GspE"],["NCBIfam%3ATIGR01710","type II secretion system major pseudopilin GspG"],["NCBIfam%3ATIGR01708","type II secretion system minor pseudopilin GspH"],["NCBIfam%3ATIGR01707","type II secretion system minor pseudopilin GspI"],["NCBIfam%3ATIGR01711","type II secretion system minor pseudopilin GspJ"]]},{"id":"GO:0030968","l":"endoplasmic reticulum unfolded protein response","na":1,"nb":16,"a":[["membrane_organelle/endoplasmic_reticulum.html","endoplasmic reticulum"]],"b":[["GO%3A0036500","ATF6-mediated unfolded protein response"],["GO%3A0030968","endoplasmic reticulum unfolded protein response"],["GO%3A0036498","IRE1-mediated unfolded protein response"],["GO%3A0036499","PERK-mediated unfolded protein response"],["Reactome%3AR-HSA-8874177","ATF6B (ATF6-beta) activates chaperones"],["Reactome%3AR-HSA-381119","Unfolded Protein Response (UPR)"]]},{"id":"GO:1904262","l":"negative regulation of TORC1 signaling","na":1,"nb":16,"a":[["other/gator1_complex.html","GATOR1 complex"]],"b":[["ComplexPortal%3ACPX-2665","CASTOR1 arginine-sensing complex"],["ComplexPortal%3ACPX-2667","CASTOR1-CASTOR2 arginine binding complex"],["ComplexPortal%3ACPX-26523","GATOR1 complex"],["ComplexPortal%3ACPX-2781","GATOR1 complex"],["ComplexPortal%3ACPX-6226","GATOR1 complex"],["ComplexPortal%3ACPX-26527","GATOR2 complex"]]},{"id":"GO:1904263","l":"positive regulation of TORC1 signaling","na":1,"nb":16,"a":[["other/gator2_complex.html","GATOR2 complex"]],"b":[["ComplexPortal%3ACPX-26527","GATOR2 complex"],["ComplexPortal%3ACPX-6227","GATOR2 complex"],["ComplexPortal%3ACPX-26516","RAG guanosine triphosphatase complex"],["ComplexPortal%3ACPX-26517","RAG guanosine triphosphatase complex"],["ComplexPortal%3ACPX-2542","RAG guanosine triphosphatase complex, RAGA-RAGC variant"],["ComplexPortal%3ACPX-2513","RAG guanosine triphosphatase complex, RAGA-RAGD variant"]]},{"id":"UniProt:P0A7S3","l":"Small ribosomal subunit protein uS12","na":1,"nb":16,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["GO%3A0022627","cytosolic small ribosomal subunit"],["GO%3A0005840","ribosome"],["GO%3A0034336","misfolded RNA binding"],["GO%3A0019843","rRNA binding"],["GO%3A0000049","tRNA binding"]]},{"id":"DOI:10.1038/nrmicro1887","l":"","na":15,"nb":1,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"],["appendage/bacterial_type_flagellum_basal_body.html","bacterial-type flagellum basal body"],["appendage/bacterial_type_flagellum_basal_body_c_ring.html","bacterial-type flagellum basal body, C ring"],["appendage/bacterial_type_flagellum_basal_body_distal_rod.html","bacterial-type flagellum basal body, distal rod"],["appendage/bacterial_type_flagellum_basal_body_distal_rod_l_ring.html","bacterial-type flagellum basal body, distal rod, L ring"],["appendage/bacterial_type_flagellum_basal_body_distal_rod_p_ring.html","bacterial-type flagellum basal body, distal rod, P ring"]],"b":[["NCBIfam%3ANF024544","flagella basal body P-ring formation protein FlgA"]]},{"id":"GO:0030121","l":"AP-1 adaptor complex","na":1,"nb":15,"a":[["other/ap_1_adaptor_complex.html","AP-1 adaptor complex"]],"b":[["ComplexPortal%3ACPX-2510","Adaptor complex AP-1"],["ComplexPortal%3ACPX-26625","Adaptor complex AP-1"],["ComplexPortal%3ACPX-532","Adaptor complex AP-1"],["ComplexPortal%3ACPX-533","Adaptor complex AP-1R"],["ComplexPortal%3ACPX-26626","Adaptor complex AP-2"],["ComplexPortal%3ACPX-2725","Adaptor complex AP-2"]]},{"id":"GO:0045039","l":"protein insertion into mitochondrial inner 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I","na":1,"nb":14,"a":[["other/nucleolus.html","nucleolus"]],"b":[["GO%3A0042790","nucleolar large rRNA transcription by RNA polymerase I"],["GO%3A0006360","transcription by RNA polymerase I"],["Reactome%3AR-HSA-73864","RNA Polymerase I Transcription"],["PANTHER%3APTHR14440","DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49"],["PANTHER%3APTHR47227","DNA-DIRECTED RNA POLYMERASE SUBUNIT K"],["PANTHER%3APTHR10535","DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1"]]},{"id":"GO:0010494","l":"cytoplasmic stress granule","na":1,"nb":14,"a":[["ribonucleoprotein/cytoplasmic_stress_granule.html","cytoplasmic stress granule"]],"b":[["ComplexPortal%3ACPX-21432","CAPRIN1-G3BP1, stress granules assembly regulating complex"],["ComplexPortal%3ACPX-18979","CAPRIN1-G3BP2, stress granules assembly regulating complex"],["ComplexPortal%3ACPX-8306","FMR1-FXR1 RNA-binding complex"],["ComplexPortal%3ACPX-8322","FMR1-FXR2 RNA-binding complex"],["ComplexPortal%3ACPX-8305","FMR1 RNA-binding homodimer"],["ComplexPortal%3ACPX-8342","FXR1-FXR2 RNA-binding complex"]]},{"id":"GO:0030123","l":"AP-3 adaptor complex","na":1,"nb":14,"a":[["other/ap_3_adaptor_complex.html","AP-3 adaptor complex"]],"b":[["ComplexPortal%3ACPX-535","Adapter complex AP-3"],["ComplexPortal%3ACPX-26627","Adaptor complex AP-3"],["ComplexPortal%3ACPX-2727","Adaptor complex AP-3"],["ComplexPortal%3ACPX-5055","Neuronal AP-3 Adaptor complex, sigma3a variant"],["ComplexPortal%3ACPX-5147","Neuronal AP-3 Adaptor complex, sigma3a variant"],["ComplexPortal%3ACPX-5053","Neuronal AP-3 Adaptor complex, sigma3b variant"]]},{"id":"NCBITaxon:5702","l":"Trypanosoma brucei brucei","na":1,"nb":14,"a":[["appendage/paraflagellar_rod.html","paraflagellar rod"]],"b":[["IDPO%3A0000031","flexible C-terminal tail"],["IDPO%3A0000032","flexible N-terminal tail"],["Pfam%3APF05887","Procyclic acidic repetitive protein (PARP)"],["Pfam%3APF18526","Thymine dioxygenase JBP1 DNA-binding domain"],["Pfam%3APF22592","FCaBP EF-hand domain"],["Pfam%3APF12131","Protein of unknown function (DUF3586)"]]},{"id":"UniProt:P0A7R5","l":"Small ribosomal subunit protein uS10","na":1,"nb":14,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["ComplexPortal%3ACPX-5780","lambdaN-dependent processive transcription antitermination complex"],["ComplexPortal%3ACPX-5674","Transcription elongation complex"],["GO%3A0001072","transcription antitermination factor activity, RNA binding"],["GO%3A0032784","regulation of DNA-templated transcription elongation"],["GO%3A0031564","transcription antitermination"]]},{"id":"UniProt:P23446","l":"","na":1,"nb":14,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"]],"b":[["GO%3A0030694","bacterial-type flagellum basal body, rod"],["GO%3A0009424","bacterial-type flagellum hook"],["NCBIfam%3ATIGR02490","flagellar basal-body rod protein FlgF"],["NCBIfam%3ANF009278","flagellar basal body rod protein FlgG"],["NCBIfam%3ATIGR03506","flagellar hook-basal body complex protein"],["InterPro%3AIPR019776","Flagellar basal body rod protein, conserved site"]]},{"id":"GO:0030990","l":"intraciliary transport particle","na":1,"nb":13,"a":[["appendage/cilium.html","cilium"]],"b":[["GO%3A0030990","intraciliary transport particle"],["PANTHER%3APTHR16011","IFT57/HIPPI"],["PANTHER%3APTHR31978","INTRAFLAGELLAR TRANSPORT PROTEIN 20 HOMOLOG"],["PANTHER%3APTHR33724","INTRAFLAGELLAR TRANSPORT PROTEIN 43 HOMOLOG"],["PANTHER%3APTHR13376","INTRAFLAGELLAR TRANSPORT PROTEIN 46 HOMOLOG"],["PANTHER%3APTHR14781","INTRAFLAGELLAR TRANSPORT PROTEIN 56"]]},{"id":"GO:0032153","l":"cell division site","na":1,"nb":13,"a":[["division_machinery/divisome_complex.html","divisome complex"]],"b":[["ComplexPortal%3ACPX-1936","Divisome complex"],["GO%3A0032153","cell division site"],["PANTHER%3APTHR36419","ARRESTIN FAMILY PROTEIN 1"],["PANTHER%3APTHR30474","CELL CYCLE PROTEIN"],["PANTHER%3APTHR37479","CELL DIVISION PROTEIN FTSL"],["PANTHER%3APTHR30314","CELL DIVISION PROTEIN FTSZ-RELATED"]]},{"id":"GO:0033104","l":"type VI protein secretion system complex","na":1,"nb":13,"a":[["secretion_system/type_vi_protein_secretion_system_complex.html","type VI protein secretion system complex"]],"b":[["GO%3A0033104","type VI protein secretion system complex"],["NCBIfam%3ANF053769","CIS1 family contractile injection system inner tube protein"],["NCBIfam%3ANF053768","CIS12 family contractile injection system protein"],["NCBIfam%3ANF053767","CIS13 family contractile injection system protein"],["NCBIfam%3ANF053770","CIS5 family contractile injection system inner tube adaptor"],["NCBIfam%3ATIGR03345","type VI secretion system ATPase TssH"]]},{"id":"NCBITaxon:203119","l":"Acetivibrio thermocellus ATCC 27405","na":1,"nb":13,"a":[["other/cellulosome.html","cellulosome"]],"b":[["Pfam%3APF03425","Carbohydrate binding domain (family 11)"],["Pfam%3APF00942","Cellulose binding domain"],["Pfam%3APF17996","Carbohydrate esterase 2 N-terminal"],["Pfam%3APF00963","Cohesin domain"],["Pfam%3APF16654","Diaminopimelic acid dehydrogenase C-terminal domain"],["Pfam%3APF00404","Dockerin type I domain"]]},{"id":"UniProt:P0A7L8","l":"Large ribosomal subunit protein bL27","na":1,"nb":13,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["GO%3A0022625","cytosolic large ribosomal subunit"],["GO%3A0043022","ribosome binding"],["GO%3A0000049","tRNA binding"],["GO%3A1902626","assembly of large subunit precursor of preribosome"],["GO%3A0002181","cytoplasmic translation"]]},{"id":"UniProt:P0AG67","l":"Small ribosomal subunit protein bS1","na":1,"nb":13,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ANF004951","30S ribosomal protein S1"],["NCBIfam%3ANF004952","30S ribosomal protein S1"],["NCBIfam%3ANF004954","30S ribosomal protein S1"],["NCBIfam%3ATIGR00717","30S ribosomal protein S1"],["proteintraitsmech%3AMEROPS_CLEAVAGE_A02_011","human endogenous retrovirus K retropepsin cleavage specificity"]]},{"id":"UniProt:P0AGA2","l":"","na":1,"nb":13,"a":[["secretion_system/secyeg_translocon_complex.html","SecYEG translocon complex"]],"b":[["ComplexPortal%3ACPX-1095","Holo-translocon SecYEG-SecDF-YajC-YidC complex"],["ComplexPortal%3ACPX-1096","Protein-conducting channel SecYEG complex"],["GO%3A0031522","cell envelope Sec protein transport complex"],["GO%3A0005048","signal sequence receptor activity"],["GO%3A0043952","protein transport by the Sec complex"],["GO%3A0006616","SRP-dependent cotranslational protein targeting to membrane, translocation"]]},{"id":"UniProt:P61175","l":"Large ribosomal subunit protein uL22","na":1,"nb":13,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["GO%3A0015934","large ribosomal subunit"],["GO%3A0070180","large ribosomal subunit rRNA binding"],["GO%3A1902626","assembly of large subunit precursor of preribosome"],["GO%3A0042256","cytosolic ribosome assembly"],["GO%3A0042255","ribosome assembly"]]},{"id":"GO:0017119","l":"COG complex","na":1,"nb":12,"a":[["other/cog_complex.html","COG complex"]],"b":[["ComplexPortal%3ACPX-1840","COG Golgi transport complex"],["ComplexPortal%3ACPX-2794","COG tethering complex"],["ComplexPortal%3ACPX-6199","COG tethering complex"],["GO%3A0017119","COG complex"],["PANTHER%3APTHR21506","COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6"],["PANTHER%3APTHR12961","CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2"]]},{"id":"GO:0045040","l":"protein insertion into mitochondrial outer membrane","na":1,"nb":12,"a":[["other/sam_complex.html","SAM complex"]],"b":[["ComplexPortal%3ACPX-2281","MIM mitochondrial import complex"],["ComplexPortal%3ACPX-26566","MIM mitochondrial import complex"],["ComplexPortal%3ACPX-6133","SAM mitochondrial sorting and assembly machinery complex"],["ComplexPortal%3ACPX-6121","TOM40 mitochondrial outer membrane translocase complex"],["ComplexPortal%3ACPX-8921","TOM40 mitochondrial outer membrane translocase complex"],["ComplexPortal%3ACPX-8926","TOM40 mitochondrial outer membrane translocase complex, testis-specific variant"]]},{"id":"UniProt:P0A7R1","l":"Large ribosomal subunit protein bL9","na":1,"nb":12,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR00158","50S ribosomal protein L9"],["InterPro%3AIPR020069","Large ribosomal subunit protein bL9, C-terminal"],["InterPro%3AIPR020070","Large ribosomal subunit protein bL9, N-terminal"],["Pfam%3APF03948","Ribosomal protein L9, C-terminal domain"],["Pfam%3APF01281","Ribosomal protein L9, N-terminal domain"]]},{"id":"UniProt:P0AG96","l":"","na":1,"nb":12,"a":[["secretion_system/secyeg_translocon_complex.html","SecYEG translocon complex"]],"b":[["ComplexPortal%3ACPX-1095","Holo-translocon SecYEG-SecDF-YajC-YidC complex"],["ComplexPortal%3ACPX-1096","Protein-conducting channel SecYEG complex"],["GO%3A0031522","cell envelope Sec protein transport complex"],["GO%3A0043952","protein transport by the Sec complex"],["GO%3A0006616","SRP-dependent cotranslational protein targeting to membrane, translocation"],["NCBIfam%3ANF004372","preprotein translocase subunit SecE"]]},{"id":"UniProt:P23448","l":"","na":1,"nb":12,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"]],"b":[["GO%3A0009425","bacterial-type flagellum basal body"],["GO%3A0071973","bacterial-type flagellum-dependent cell motility"],["GO%3A0071978","bacterial-type flagellum-dependent swarming motility"],["NCBIfam%3ATIGR00207","flagellar motor switch protein FliG"],["InterPro%3AIPR023087","Flagellar motor switch protein FliG, C-terminal"],["InterPro%3AIPR032779","Flagellar motor switch protein FliG, middle domain"]]},{"id":"UniProt:P60422","l":"Large ribosomal subunit protein uL2","na":1,"nb":12,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["ComplexPortal%3ACPX-1944","DnaA-L2 DNA replication initiation inhibitory complex"],["GO%3A0032297","negative regulation of DNA-templated DNA replication initiation"],["NCBIfam%3ATIGR01171","50S ribosomal protein L2"],["InterPro%3AIPR022671","Large ribosomal subunit protein uL2, conserved site"],["InterPro%3AIPR022669","Large ribosomal subunit protein uL2, C-terminal"]]},{"id":"DOI:10.1016/j.cell.2006.10.037","l":"","na":1,"nb":11,"a":[["ribonucleoprotein/exosome_rnase_complex.html","exosome (RNase complex)"]],"b":[["InterPro%3AIPR001247","Exoribonuclease, phosphorolytic domain 1"],["InterPro%3AIPR015847","Exoribonuclease, phosphorolytic domain 2"],["InterPro%3AIPR012588","Exosome-associated factor Rrp6, N-terminal"],["InterPro%3AIPR019495","Exosome complex component CSL4, C-terminal"],["InterPro%3AIPR048541","Exosome complex component RRP40, N-terminal domain"],["InterPro%3AIPR049469","Exosome complex component RRP40, type I KH domain"]]},{"id":"DOI:10.1038/nature00769","l":"","na":1,"nb":11,"a":[["other/nucleolus.html","nucleolus"]],"b":[["InterPro%3AIPR018972","Sas10 C-terminal domain"],["InterPro%3AIPR007148","Small-subunit processome, Utp12"],["InterPro%3AIPR022125","U3 small nucleolar RNA-associated protein 10, N-terminal"],["InterPro%3AIPR013934","U3 small nucleolar RNA-associated protein 13, C-terminal"],["InterPro%3AIPR018983","U3 small nucleolar RNA-associated protein 15, C-terminal"],["InterPro%3AIPR056907","U3 small nucleolar RNA-associated protein 6 homolog, C-terminal"]]},{"id":"GO:1990586","l":"divisome complex","na":1,"nb":11,"a":[["division_machinery/divisome_complex.html","divisome complex"]],"b":[["ComplexPortal%3ACPX-1936","Divisome complex"],["ComplexPortal%3ACPX-3299","FtsBL complex"],["ComplexPortal%3ACPX-3099","FtsQBL complex"],["GO%3A1990586","divisome complex"],["GO%3A1990588","FtsBL complex"],["GO%3A1990587","FtsQBL complex"]]},{"id":"UniProt:O32062","l":"","na":1,"nb":11,"a":[["spore/endospore_external_encapsulating_structure.html","endospore external encapsulating structure"]],"b":[["GO%3A0043595","endospore cortex"],["GO%3A0042763","intracellular immature spore"],["GO%3A0008932","lytic endotransglycosylase activity"],["CDD%3Acd00118","LysM"],["InterPro%3AIPR018392","LysM domain"],["InterPro%3AIPR014248","Spore coat assembly protein SafA"]]},{"id":"UniProt:P02359","l":"Small ribosomal subunit protein uS7","na":1,"nb":11,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["GO%3A0022627","cytosolic small ribosomal subunit"],["GO%3A0000028","ribosomal small subunit assembly"],["NCBIfam%3ATIGR01029","30S ribosomal protein S7"],["InterPro%3AIPR020606","Small ribosomal subunit protein uS7, conserved site"],["CDD%3Acd14869","uS7_Bacteria"]]},{"id":"UniProt:P0A6E6","l":"","na":1,"nb":11,"a":[["energy_complex/proton_transporting_atp_synthase_complex.html","proton-transporting ATP synthase complex"]],"b":[["ComplexPortal%3ACPX-4022","ATP synthase complex"],["NCBIfam%3ATIGR01216","ATP synthase F1 subunit epsilon"],["NCBIfam%3ANF001847","F0F1 ATP synthase subunit epsilon"],["CDD%3Acd12152","F1-ATPase_delta"],["InterPro%3AIPR020547","ATP synthase epsilon subunit, C-terminal domain"],["InterPro%3AIPR020546","ATP synthase, F1 complex, delta/epsilon subunit, N-terminal"]]},{"id":"UniProt:P0A7J3","l":"Large ribosomal subunit protein uL10","na":1,"nb":11,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ANF000955","50S ribosomal protein L10"],["InterPro%3AIPR002363","Large ribosomal subunit protein uL10, conserved site, bacteria"],["CDD%3Acd05797","Ribosomal_L10"],["InterPro%3AIPR001790","Large ribosomal subunit protein uL10, N-terminal"],["Pfam%3APF00466","Ribosomal protein L10"]]},{"id":"UniProt:P0A7K2","l":"Large ribosomal subunit protein bL12","na":1,"nb":11,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR00855","50S ribosomal protein L7/L12"],["CDD%3Acd00387","Ribosomal_L7_L12"],["InterPro%3AIPR013823","Large ribosomal subunit protein bL12, C-terminal"],["InterPro%3AIPR008932","Large ribosomal subunit protein bL12, oligomerization"],["Pfam%3APF16320","Ribosomal protein L7/L12 dimerisation domain"]]},{"id":"UniProt:P68699","l":"","na":1,"nb":11,"a":[["energy_complex/proton_transporting_atp_synthase_complex.html","proton-transporting ATP synthase complex"]],"b":[["RHEA%3A57720","ATP + H2O + 4 H(+)(in) = ADP + phosphate + 5 H(+)(out)"],["ComplexPortal%3ACPX-4022","ATP synthase complex"],["GO%3A0033177","proton-transporting two-sector ATPase complex, proton-transporting domain"],["GO%3A0042777","proton motive force-driven plasma membrane ATP synthesis"],["NCBIfam%3ATIGR01260","ATP synthase F0 subunit C"],["NCBIfam%3ANF005363","F0F1 ATP synthase subunit C"]]},{"id":"GO:0005736","l":"RNA polymerase I complex","na":1,"nb":10,"a":[["other/nucleolus.html","nucleolus"]],"b":[["ComplexPortal%3ACPX-1664","DNA-directed RNA Polymerase I complex"],["ComplexPortal%3ACPX-2386","DNA-directed RNA polymerase I complex"],["ComplexPortal%3ACPX-2602","DNA-directed RNA polymerase I complex"],["ComplexPortal%3ACPX-8907","DNA-directed RNA polymerase I complex"],["ComplexPortal%3ACPX-8913","DNA-directed RNA polymerase I complex"],["GO%3A0005736","RNA polymerase I complex"]]},{"id":"GO:0043952","l":"protein transport by the Sec complex","na":1,"nb":10,"a":[["secretion_system/secyeg_translocon_complex.html","SecYEG translocon complex"]],"b":[["ComplexPortal%3ACPX-1095","Holo-translocon SecYEG-SecDF-YajC-YidC complex"],["ComplexPortal%3ACPX-1096","Protein-conducting channel SecYEG complex"],["GO%3A0043952","protein 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3"],["InterPro%3AIPR042196","FHIPEP, domain 4"]]},{"id":"UniProt:P39064","l":"","na":1,"nb":10,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"]],"b":[["GO%3A0120101","bacterial-type flagellum stator complex"],["NCBIfam%3ANF005382","flagellar motor protein MotS"],["CDD%3Acd07185","OmpA_C-like"],["InterPro%3AIPR025713","Motility protein B-like, N-terminal domain"],["InterPro%3AIPR006665","OmpA-like domain"],["Pfam%3APF13677","Membrane MotB of proton-channel complex MotA/MotB"]]},{"id":"UniProt:P62399","l":"Large ribosomal subunit protein uL5","na":1,"nb":10,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ANF000585","50S ribosomal protein L5"],["InterPro%3AIPR020929","Large ribosomal subunit protein uL5, conserved site"],["InterPro%3AIPR031309","Large ribosomal subunit protein uL5, C-terminal"],["InterPro%3AIPR031310","Large ribosomal subunit protein uL5, N-terminal"],["Pfam%3APF00673","ribosomal L5P family C-terminus"]]},{"id":"CHEBI:18248","l":"iron atom","na":1,"nb":9,"a":[["membrane_organelle/magnetosome.html","magnetosome"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_18248","requires Fe"],["proteintraitsmech%3AMETALPDB_FE_DINUCLEAR","dinuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_HEPTANUCLEAR","heptanuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_HEXANUCLEAR","hexanuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_MONONUCLEAR","mononuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_OCTANUCLEAR","octanuclear iron site"]]},{"id":"DOI:10.1038/nsmb.1548","l":"","na":1,"nb":9,"a":[["other/dsl1_nzr_complex.html","Dsl1/NZR complex"]],"b":[["InterPro%3AIPR021876","Retrograde transport protein Dsl1, C-terminal domain"],["InterPro%3AIPR021875","Retrograde transport protein Dsl1 N-terminal domain"],["InterPro%3AIPR038442","Dsl1, N-terminal domain superfamily"],["InterPro%3AIPR042044","EXOC6/PINT-1/Sec15/Tip20, 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component"]]},{"id":"GO:0097546","l":"ciliary base","na":1,"nb":9,"a":[["appendage/cilium.html","cilium"]],"b":[["GO%3A0097546","ciliary base"],["PANTHER%3APTHR38326","CHROMOSOME 11 OPEN READING FRAME 97"],["PANTHER%3APTHR31978","INTRAFLAGELLAR TRANSPORT PROTEIN 20 HOMOLOG"],["PANTHER%3APTHR14781","INTRAFLAGELLAR TRANSPORT PROTEIN 56"],["PANTHER%3APTHR44117","INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG"],["PANTHER%3APTHR21532","PHOSPHODIESTERASE HL"]]},{"id":"GO:1905354","l":"exoribonuclease complex","na":1,"nb":9,"a":[["ribonucleoprotein/exosome_rnase_complex.html","exosome (RNase complex)"]],"b":[["ComplexPortal%3ACPX-5783","MERS-CoV 3'-5' exoribonuclease proof-reading complex"],["ComplexPortal%3ACPX-5692","SARS-CoV-2 3'-5' exoribonuclease proof-reading complex"],["ComplexPortal%3ACPX-5707","SARS-CoV 3'-5' exoribonuclease proof-reading complex"],["GO%3A1905354","exoribonuclease complex"],["GO%3A0000178","exosome (RNase complex)"],["GO%3A0090730","Las1 complex"]]},{"id":"NCBITaxon:5691","l":"Trypanosoma brucei","na":9,"nb":1,"a":[["cytoskeleton/bilobe_structure.html","bilobe structure"],["cytoskeleton/ciliary_pocket_collar.html","ciliary pocket collar"],["cytoskeleton/flagellum_attachment_zone.html","flagellum attachment zone"],["cytoskeleton/tripartite_attachment_complex.html","tripartite attachment complex"],["membrane_organelle/flagellar_pocket.html","flagellar pocket"],["membrane_organelle/glycosome.html","glycosome"]],"b":[["TED%3AAF-A0A1J0R543-F1-model_v4_TED02","TED novel fold AF-A0A1J0R543-F1-model_v4_TED02"]]},{"id":"UniProt:P02358","l":"Small ribosomal subunit protein bS6","na":1,"nb":9,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ATIGR00166","30S ribosomal protein S6"],["InterPro%3AIPR020815","Small ribosomal subunit protein bS6, conserved site"],["CDD%3Acd00473","bS6"],["Pfam%3APF01250","Ribosomal protein S6"],["InterPro%3AIPR035980","Small ribosomal subunit protein bS6 superfamily"]]},{"id":"UniProt:P0A7L3","l":"Large ribosomal subunit protein bL20","na":1,"nb":9,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR01032","50S ribosomal protein L20"],["InterPro%3AIPR049946","Large ribosomal subunit protein bL20, conserved site"],["CDD%3Acd07026","Ribosomal_L20"],["Pfam%3APF00453","Ribosomal protein L20"],["InterPro%3AIPR035566","Ribosomal protein bL20, C-terminal"]]},{"id":"UniProt:P0A9X4","l":"","na":1,"nb":9,"a":[["cytoskeleton/mreb_filament.html","MreB filament"]],"b":[["ComplexPortal%3ACPX-5718","Elongasome complex"],["GO%3A0099513","polymeric cytoskeletal fiber"],["GO%3A0043093","FtsZ-dependent cytokinesis"],["GO%3A0009252","peptidoglycan biosynthetic process"],["GO%3A0051983","regulation of chromosome segregation"],["NCBIfam%3ATIGR00904","MreB/Mrl family cell shape determining protein"]]},{"id":"UniProt:P0AA10","l":"Large ribosomal subunit protein uL13","na":1,"nb":9,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["GO%3A0070180","large ribosomal subunit rRNA binding"],["NCBIfam%3ATIGR01066","50S ribosomal protein L13"],["InterPro%3AIPR023563","Large ribosomal subunit protein uL13, conserved site"],["CDD%3Acd00392","Ribosomal_L13"],["Pfam%3APF00572","Ribosomal protein L13"]]},{"id":"UniProt:P0ADZ4","l":"Small ribosomal subunit protein uS15","na":1,"nb":9,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["GO%3A0070181","small ribosomal subunit rRNA binding"],["NCBIfam%3ATIGR00952","30S ribosomal protein S15"],["CDD%3Acd00353","Ribosomal_S15p_S13e"],["Pfam%3APF00312","Ribosomal protein S15"],["InterPro%3AIPR009068","uS15/NS1, RNA-binding domain superfamily"]]},{"id":"UniProt:P23453","l":"","na":1,"nb":9,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type 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PROTEIN 1"]]},{"id":"GO:0071816","l":"tail-anchored membrane protein insertion into ER membrane","na":1,"nb":8,"a":[["other/get_complex.html","GET complex"]],"b":[["ComplexPortal%3ACPX-2445","Endoplasmic reticulum membrane complex, EMC2A variant"],["ComplexPortal%3ACPX-2451","Endoplasmic reticulum membrane complex, EMC2B variant"],["ComplexPortal%3ACPX-5848","Endoplasmic reticulum membrane complex, EMC8 variant"],["ComplexPortal%3ACPX-5882","Endoplasmic reticulum membrane complex, EMC8 variant"],["ComplexPortal%3ACPX-5881","Endoplasmic reticulum membrane complex, EMC9 variant"],["ComplexPortal%3ACPX-5883","Endoplasmic reticulum membrane complex, EMC9 variant"]]},{"id":"NCBITaxon:1515","l":"Acetivibrio thermocellus","na":1,"nb":8,"a":[["other/cellulosome.html","cellulosome"]],"b":[["Pfam%3APF02927","Cellulase N-terminal ig-like domain"],["Pfam%3APF00404","Dockerin type I domain"],["PROSITE%3APS00448","Clostridium cellulosome enzymes repeated domain 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signature"]]},{"id":"UniProt:P0A7M6","l":"Large ribosomal subunit protein uL29","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR00012","50S ribosomal protein L29"],["InterPro%3AIPR018254","Large ribosomal subunit protein uL29, conserved site"],["CDD%3Acd00427","Ribosomal_L29_HIP"],["Pfam%3APF00831","Ribosomal L29 protein"],["InterPro%3AIPR036049","Large ribosomal subunit protein uL29 superfamily"]]},{"id":"UniProt:P0A7N9","l":"Large ribosomal subunit protein bL33","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ANF001860","50S ribosomal protein L33"],["NCBIfam%3ATIGR01023","50S ribosomal protein L33"],["InterPro%3AIPR018264","Large ribosomal subunit protein bL33, conserved site"],["Pfam%3APF00471","Ribosomal protein L33"],["InterPro%3AIPR038584","Large ribosomal subunit protein bL33 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N-terminal"],["Pfam%3APF03719","Ribosomal protein S5, C-terminal domain"]]},{"id":"UniProt:P0A7W7","l":"Small ribosomal subunit protein uS8","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ANF001109","30S ribosomal protein S8"],["InterPro%3AIPR047863","Small ribosomal subunit protein uS8, conserved site"],["Pfam%3APF00410","Ribosomal protein S8"],["InterPro%3AIPR035987","Small ribosomal subunit protein uS8 superfamily"],["PROSITE%3APS00053","Ribosomal protein S8 signature"]]},{"id":"UniProt:P0ABA0","l":"","na":1,"nb":8,"a":[["energy_complex/proton_transporting_atp_synthase_complex.html","proton-transporting ATP synthase complex"]],"b":[["ComplexPortal%3ACPX-4022","ATP synthase complex"],["NCBIfam%3ANF004411","F0F1 ATP synthase subunit B"],["NCBIfam%3ANF004413","F0F1 ATP synthase subunit B"],["NCBIfam%3ATIGR01144","F0F1 ATP synthase subunit B"],["CDD%3Acd06503","ATP-synt_Fo_b"],["Pfam%3APF00430","ATP synthase B/B' CF(0)"]]},{"id":"UniProt:P0ABA4","l":"","na":1,"nb":8,"a":[["energy_complex/proton_transporting_atp_synthase_complex.html","proton-transporting ATP synthase complex"]],"b":[["ComplexPortal%3ACPX-4022","ATP synthase complex"],["NCBIfam%3ATIGR01145","ATP synthase F1 subunit delta"],["NCBIfam%3ANF004402","F0F1 ATP synthase subunit delta"],["NCBIfam%3ANF004404","F0F1 ATP synthase subunit delta"],["InterPro%3AIPR020781","ATPase, OSCP/delta subunit, conserved site"],["Pfam%3APF00213","ATP synthase delta (OSCP) subunit"]]},{"id":"UniProt:P0ABG7","l":"","na":1,"nb":8,"a":[["division_machinery/elongasome.html","elongasome"]],"b":[["ComplexPortal%3ACPX-5718","Elongasome complex"],["GO%3A0015648","lipid-linked peptidoglycan transporter activity"],["GO%3A0031504","peptidoglycan-based cell wall organization"],["NCBIfam%3ANF008060","peptidoglycan glycosyltransferase MrdB"],["NCBIfam%3ATIGR02210","rod shape-determining protein RodA"],["InterPro%3AIPR018365","Cell cycle, FtsW / RodA / SpoVE, conserved site"]]},{"id":"UniProt:P0ABH0","l":"","na":1,"nb":8,"a":[["division_machinery/divisome_complex.html","divisome complex"]],"b":[["ComplexPortal%3ACPX-1936","Divisome complex"],["NCBIfam%3ANF007009","cell division protein FtsA"],["NCBIfam%3ATIGR01174","cell division protein FtsA"],["CDD%3Acd24048","ASKHA_NBD_FtsA"],["InterPro%3AIPR003494","SHS2 domain inserted in FtsA"],["Pfam%3APF14450","Cell division protein FtsA"]]},{"id":"UniProt:P0ADY3","l":"Large ribosomal subunit protein uL14","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR01067","50S ribosomal protein L14"],["InterPro%3AIPR019972","Large ribosomal subunit protein uL14, conserved site"],["CDD%3Acd00337","Ribosomal_uL14"],["Pfam%3APF00238","Ribosomal protein L14p/L23e"],["InterPro%3AIPR036853","Large ribosomal subunit protein uL14 superfamily"]]},{"id":"UniProt:P0AG51","l":"Large ribosomal subunit protein uL30","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR01308","50S ribosomal protein L30"],["InterPro%3AIPR018038","Large ribosomal subunit protein uL30, conserved site"],["CDD%3Acd01658","Ribosomal_L30"],["InterPro%3AIPR016082","Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain"],["Pfam%3APF00327","Ribosomal protein L30p/L7e"]]},{"id":"UniProt:P0AG55","l":"Large ribosomal subunit protein uL6","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR03654","50S ribosomal protein L6"],["InterPro%3AIPR002358","Large ribosomal subunit protein uL6, conserved site"],["InterPro%3AIPR020040","Large ribosomal subunit protein uL6, alpha-beta domain"],["Pfam%3APF00347","Ribosomal protein L6"],["InterPro%3AIPR036789","Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily"]]},{"id":"UniProt:P16926","l":"","na":1,"nb":8,"a":[["division_machinery/elongasome.html","elongasome"]],"b":[["ComplexPortal%3ACPX-5718","Elongasome complex"],["NCBIfam%3ATIGR00219","rod shape-determining protein MreC"],["InterPro%3AIPR055342","Rod shape-determining protein MreC, beta-barrel core"],["Pfam%3APF04085","Rod shape-determining protein MreC, barrel core"],["InterPro%3AIPR042177","Cell/Rod shape-determining protein MreC, domain 1"],["InterPro%3AIPR042175","Cell/Rod shape-determining protein MreC, domain 2"]]},{"id":"UniProt:P60624","l":"Large ribosomal subunit protein uL24","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR01079","50S ribosomal protein L24"],["InterPro%3AIPR005825","Large ribosomal subunit protein uL24, conserved site"],["CDD%3Acd06089","KOW_RPL26"],["InterPro%3AIPR057264","Large ribosomal subunit protein uL24, C-terminal domain"],["InterPro%3AIPR041988","Large ribosomal subunit protein uL24, KOW domain"]]},{"id":"UniProt:P68919","l":"Large ribosomal subunit protein bL25","na":1,"nb":8,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ANF004612","50S ribosomal protein L25"],["CDD%3Acd00495","Ribosomal_L25_TL5_CTC"],["InterPro%3AIPR029751","Large ribosomal subunit protein bL25, L25 domain"],["Pfam%3APF01386","Ribosomal L25p family"],["InterPro%3AIPR011035","Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily"]]},{"id":"DOI:10.1371/journal.pbio.1001170","l":"","na":1,"nb":7,"a":[["other/ap_5_adaptor_complex.html","AP-5 adaptor complex"]],"b":[["InterPro%3AIPR048980","AP-5 complex subunit beta-1, beta-barrel domain"],["InterPro%3AIPR048978","AP-5 complex subunit beta-1, N-terminal domain"],["InterPro%3AIPR055450","AP-5 complex subunit zeta-1, ARM repeats domain"],["InterPro%3AIPR056856","AP-5 complex subunit zeta-1, C-terminal TPR domain"],["InterPro%3AIPR056857","AP-5 complex subunit zeta-1, N-terminal TPR domain"],["InterPro%3AIPR048981","AP5B1, C-terminal domain"]]},{"id":"GO:0005771","l":"multivesicular body","na":7,"nb":1,"a":[["membrane_organelle/endosome.html","endosome"],["membrane_organelle/endosome_lumen.html","endosome lumen"],["membrane_organelle/endosome_membrane.html","endosome membrane"],["membrane_organelle/late_endosome.html","late endosome"],["membrane_organelle/multivesicular_body.html","multivesicular body"],["membrane_organelle/multivesicular_body_lumen.html","multivesicular body lumen"]],"b":[["GO%3A0005771","multivesicular body"]]},{"id":"GO:0006901","l":"vesicle coat assembly","na":1,"nb":7,"a":[["other/vesicle_coat.html","vesicle coat"]],"b":[["ComplexPortal%3ACPX-4764","TRAPP II complex"],["ComplexPortal%3ACPX-4749","TRAPP II 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patch"]],"b":[["ComplexPortal%3ACPX-3541","AIM21-TDA2 actin assembly regulator complex"],["ComplexPortal%3ACPX-1500","Myosin class I complex, MYO3 variant"],["ComplexPortal%3ACPX-1470","Myosin class I complex, MYO5 variant"],["ComplexPortal%3ACPX-1335","RVS161-RVS167 amphiphysin complex"],["GO%3A0030479","actin cortical patch"],["PANTHER%3APTHR47789","LAS SEVENTEEN-BINDING PROTEIN 5"]]},{"id":"GO:0030897","l":"HOPS complex","na":1,"nb":7,"a":[["other/hops_complex.html","HOPS complex"]],"b":[["ComplexPortal%3ACPX-1136","HOPS tethering complex"],["ComplexPortal%3ACPX-1625","HOPS tethering complex"],["ComplexPortal%3ACPX-6212","HOPS tethering complex"],["ComplexPortal%3ACPX-936","HOPS tethering complex"],["GO%3A0030897","HOPS complex"],["GO%3A1902502","multivesicular body HOPS complex"]]},{"id":"GO:0030905","l":"retromer, tubulation complex","na":1,"nb":7,"a":[["other/retromer_complex.html","retromer complex"]],"b":[["ComplexPortal%3ACPX-8837","SNX1-SNX32 sorting nexin complex"],["ComplexPortal%3ACPX-8823","SNX1-SNX5 sorting nexin complex"],["ComplexPortal%3ACPX-8835","SNX1-SNX6 sorting nexin complex"],["ComplexPortal%3ACPX-8840","SNX2-SNX32 sorting nexin complex"],["ComplexPortal%3ACPX-8838","SNX2-SNX5 sorting nexin complex"],["ComplexPortal%3ACPX-8839","SNX2-SNX6 sorting nexin complex"]]},{"id":"GO:0032156","l":"septin cytoskeleton","na":1,"nb":7,"a":[["cytoskeleton/septin_ring.html","septin ring"]],"b":[["GO%3A0150050","postsynaptic septin cytoskeleton"],["GO%3A0032159","septin cap"],["GO%3A0032173","septin collar"],["GO%3A0032156","septin cytoskeleton"],["GO%3A0032160","septin filament array"],["GO%3A0005940","septin ring"]]},{"id":"GO:0033115","l":"cyanelle thylakoid membrane","na":7,"nb":1,"a":[["membrane_organelle/cyanelle.html","cyanelle"],["membrane_organelle/cyanelle_membrane.html","cyanelle membrane"],["membrane_organelle/cyanelle_stroma.html","cyanelle stroma"],["membrane_organelle/cyanelle_thylakoid.html","cyanelle thylakoid"],["membrane_organelle/cyanelle_thylakoid_lumen.html","cyanelle thylakoid lumen"],["membrane_organelle/cyanelle_thylakoid_membrane.html","cyanelle thylakoid membrane"]],"b":[["GO%3A0033115","cyanelle thylakoid membrane"]]},{"id":"GO:0035964","l":"COPI-coated vesicle budding","na":7,"nb":1,"a":[["membrane_organelle/copi_coated_vesicle.html","COPI-coated vesicle"],["membrane_organelle/copi_coated_vesicle_membrane.html","COPI-coated vesicle membrane"],["membrane_organelle/golgi_associated_vesicle.html","Golgi-associated vesicle"],["membrane_organelle/golgi_associated_vesicle_membrane.html","Golgi-associated vesicle membrane"],["membrane_organelle/golgi_membrane.html","Golgi membrane"],["other/copi_vesicle_coat.html","COPI vesicle coat"]],"b":[["GO%3A0035964","COPI-coated vesicle budding"]]},{"id":"GO:0043953","l":"protein transport by the Tat complex","na":1,"nb":7,"a":[["secretion_system/tat_protein_transport_complex.html","TAT protein transport complex"]],"b":[["ComplexPortal%3ACPX-3445","Twin-arginine translocation complex"],["GO%3A0043953","protein transport by the Tat complex"],["NCBIfam%3ANF001854","Sec-independent protein translocase subunit TatA"],["NCBIfam%3ANF002813","Sec-independent protein translocase subunit TatA"],["NCBIfam%3ATIGR01912","Sec-independent protein translocase TatC"],["NCBIfam%3ANF001940","twin-arginine translocase TatA/TatE family subunit"]]},{"id":"GO:0097597","l":"ventral disc","na":7,"nb":1,"a":[["cytoskeleton/ventral_disc.html","ventral disc"],["cytoskeleton/ventral_disc_crossbridge.html","ventral disc crossbridge"],["cytoskeleton/ventral_disc_dorsal_microribbon.html","ventral disc dorsal microribbon"],["cytoskeleton/ventral_disc_lateral_crest.html","ventral disc lateral crest"],["cytoskeleton/ventral_disc_microtubule_array.html","ventral disc microtubule array"],["cytoskeleton/ventral_disc_overlap_zone.html","ventral disc overlap zone"]],"b":[["GO%3A0097597","ventral disc"]]},{"id":"InterPro:IPR001119","l":"S-layer homology domain","na":1,"nb":7,"a":[["envelope/s_layer.html","S-layer"]],"b":[["InterPro%3AIPR011459","Domain of unknown function DUF1565"],["InterPro%3AIPR001119","S-layer homology domain"],["Pfam%3APF13205","Bacterial Ig-like domain"],["Pfam%3APF03424","Carbohydrate binding domain (family 17/28)"],["Pfam%3APF06452","Carbohydrate family 9 binding domain-like"],["Pfam%3APF07602","Protein of unknown function (DUF1565)"]]},{"id":"NCBITaxon:837","l":"Porphyromonas gingivalis","na":1,"nb":7,"a":[["secretion_system/type_ix_protein_secretion_system_complex.html","type IX protein secretion system complex"]],"b":[["Pfam%3APF07675","Cleaved Adhesin Domain"],["Pfam%3APF22492","FimA4 pilin C-terminal domain"],["Pfam%3APF15495","Major fimbrial subunit protein type IV, Fimbrillin, C-terminal"],["Pfam%3APF26306","FimD protein third domain"],["Pfam%3APF27397","FimE C-terminal domain"],["Pfam%3APF10365","Domain of unknown function (DUF2436)"]]},{"id":"Pfam:PF04728","l":"Lipoprotein leucine-zipper","na":1,"nb":7,"a":[["envelope/gram_negative_bacterium_type_cell_wall.html","Gram-negative-bacterium-type cell wall"]],"b":[["GO%3A0043580","periplasmic space organization"],["NCBIfam%3ANF007428","lipoprotein YqhH"],["NCBIfam%3ANF040598","Lpp/OprI family alanine-zipper lipoprotein"],["NCBIfam%3ANF011925","major outer membrane lipoprotein"],["InterPro%3AIPR006817","Lipoprotein leucine-zipper"],["Pfam%3APF04728","Lipoprotein leucine-zipper"]]},{"id":"UniProt:P0A7K6","l":"Large ribosomal subunit protein bL19","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR01024","50S ribosomal protein L19"],["InterPro%3AIPR018257","Large ribosomal subunit protein bL19, conserved site"],["Pfam%3APF01245","Ribosomal protein L19"],["InterPro%3AIPR038657","Large ribosomal subunit protein bL19 superfamily"],["PROSITE%3APS01015","Ribosomal protein L19 signature"]]},{"id":"UniProt:P0A7N1","l":"Large ribosomal subunit protein bL31B","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR00105","50S ribosomal protein L31"],["NCBIfam%3ANF002462","type B 50S ribosomal protein L31"],["Pfam%3APF01197","Ribosomal protein L31"],["InterPro%3AIPR042105","Large ribosomal subunit protein bL31 superfamily"],["PROSITE%3APS01143","Ribosomal protein L31 signature"]]},{"id":"UniProt:P0A7Q1","l":"Large ribosomal subunit protein bL35","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR00001","50S ribosomal protein L35"],["InterPro%3AIPR018265","Large ribosomal subunit protein bL35, conserved site"],["Pfam%3APF01632","Ribosomal protein L35"],["InterPro%3AIPR037229","Large ribosomal subunit protein bL35 superfamily"],["PROSITE%3APS00936","Ribosomal protein L35 signature"]]},{"id":"UniProt:P0A7T3","l":"Small ribosomal subunit protein bS16","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ATIGR00002","30S ribosomal protein S16"],["InterPro%3AIPR020592","Small ribosomal subunit protein bS16, conserved site"],["Pfam%3APF00886","Ribosomal protein S16"],["InterPro%3AIPR023803","Small ribosomal subunit protein bS16 domain superfamily"],["PROSITE%3APS00732","Ribosomal protein S16 signature"]]},{"id":"UniProt:P0A7T7","l":"Small ribosomal subunit protein bS18","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ATIGR00165","30S ribosomal protein S18"],["InterPro%3AIPR018275","Small ribosomal subunit protein bS18, conserved site"],["Pfam%3APF01084","Ribosomal protein S18"],["InterPro%3AIPR036870","Small ribosomal subunit protein bS18 superfamily"],["PROSITE%3APS00057","Ribosomal protein S18 signature"]]},{"id":"UniProt:P0A7U3","l":"Small ribosomal subunit protein uS19","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ATIGR01050","30S ribosomal protein S19"],["InterPro%3AIPR020934","Small ribosomal subunit protein uS19, conserved site"],["Pfam%3APF00203","Ribosomal protein S19"],["InterPro%3AIPR023575","Small ribosomal subunit protein uS19, superfamily"],["PROSITE%3APS00323","Ribosomal protein S19 signature"]]},{"id":"UniProt:P0A7U7","l":"Small ribosomal subunit protein bS20","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["GO%3A0008073","ornithine decarboxylase inhibitor activity"],["GO%3A0070181","small ribosomal subunit rRNA binding"],["NCBIfam%3ATIGR00029","30S ribosomal protein S20"],["Pfam%3APF01649","Ribosomal protein S20"],["InterPro%3AIPR036510","Small ribosomal subunit protein bS20 superfamily"]]},{"id":"UniProt:P0A9A6","l":"","na":1,"nb":7,"a":[["division_machinery/divisome_complex.html","divisome complex"]],"b":[["ComplexPortal%3ACPX-1936","Divisome complex"],["NCBIfam%3ATIGR00065","cell division protein FtsZ"],["InterPro%3AIPR020805","Cell division protein FtsZ, conserved site"],["CDD%3Acd02201","FtsZ_type1"],["InterPro%3AIPR024757","Cell division protein FtsZ, C-terminal"],["PROSITE%3APS01134","FtsZ protein signature 1"]]},{"id":"UniProt:P0AG44","l":"Large ribosomal subunit protein bL17","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3807","50S large ribosomal subunit"],["NCBIfam%3ATIGR00059","50S ribosomal protein L17"],["InterPro%3AIPR047859","Large ribosomal subunit protein bL17, conserved site"],["Pfam%3APF01196","Ribosomal protein L17"],["InterPro%3AIPR036373","Large ribosomal subunit protein bL17 superfamily"],["PROSITE%3APS01167","Ribosomal protein L17 signature"]]},{"id":"UniProt:P0AG63","l":"Small ribosomal subunit protein uS17","na":1,"nb":7,"a":[["ribonucleoprotein/ribosome.html","ribosome"]],"b":[["ComplexPortal%3ACPX-3802","30S small ribosomal subunit"],["NCBIfam%3ANF004123","30S ribosomal protein S17"],["NCBIfam%3ATIGR03635","30S ribosomal protein S17"],["InterPro%3AIPR019979","Small ribosomal subunit protein uS17, conserved site"],["CDD%3Acd00364","Ribosomal_uS17"],["Pfam%3APF00366","Ribosomal protein S17"]]},{"id":"UniProt:P23447","l":"","na":1,"nb":7,"a":[["appendage/bacterial_type_flagellum.html","bacterial-type flagellum"]],"b":[["GO%3A0009431","bacterial-type flagellum basal body, MS ring"],["NCBIfam%3ATIGR00206","flagellar basal-body MS-ring/collar protein FliF"],["InterPro%3AIPR013556","Flagellar M-ring C-terminal"],["InterPro%3AIPR006182","Flagellar M-ring, N-terminal"],["Pfam%3APF08345","Flagellar M-ring protein C-terminal"],["Pfam%3APF01514","Secretory 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Bacillus coagulans + Pseudomonas putida Lactic-acid Co-culture"]],"b":[["EC%3A1.1.3.38","vanillyl-alcohol oxidase"],["EC%3A1.11.1.16","versatile peroxidase"],["EC%3A1.13.11.43","lignostilbene alphabeta-dioxygenase"],["EC%3A1.13.11.88","isoeugenol monooxygenase"],["EC%3A1.13.11.94","4-vinylguaiacol dioxygenase"],["EC%3A1.2.1.67","vanillin dehydrogenase"]]},{"id":"GO:0031347","l":"regulation of defense response","na":1,"nb":25,"a":[["Dangl_SynComm_35.html","Jeff Dangl's SynComm 35"]],"b":[["GO%3A0031348","negative regulation of defense response"],["GO%3A0031349","positive regulation of defense response"],["GO%3A0002759","regulation of antimicrobial humoral response"],["GO%3A2000822","regulation of behavioral fear response"],["GO%3A0010185","regulation of cellular defense response"],["GO%3A2000071","regulation of defense response by callose deposition"]]},{"id":"NCBITaxon:226186","l":"Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)","na":1,"nb":25,"a":[["Bacteroides_Eubacterium_Gnotobiotic_Gut_Model.html","Bacteroides-Eubacterium Gnotobiotic Gut Model"]],"b":[["Pfam%3APF06439","3-keto-alpha-glucoside-1,2-lyase-like domain"],["Pfam%3APF13444","Acetyltransferase (GNAT) domain"],["Pfam%3APF19576","Acyltransferase"],["Pfam%3APF23764","GLAA-B beta-barrel domain II"],["Pfam%3APF13715","CarboxypepD_reg-like domain"],["Pfam%3APF26120","SusF, first starch specific CBM"]]},{"id":"NCBITaxon:354","l":"Azotobacter vinelandii","na":1,"nb":25,"a":[["Synechococcus_Azotobacter_Photoproduction_Mutualism.html","Synechococcus-Azotobacter Photoproduction Mutualism"]],"b":[["Pfam%3APF13372","Alginate export"],["Pfam%3APF25965","ALG44 beta-barrel domain"],["Pfam%3APF25964","ALG44, barrel-sandwich hybrid domain"],["Pfam%3APF16844","Dinitrogenase iron-molybdenum cofactor, N-terminal"],["Pfam%3APF00142","4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family"],["Pfam%3APF27446","Uridylyltransferase GlnD fifth 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Fe(III)-[cytochrome c] + H2O = cyanate + sulfur + 2 Fe(II)-[cytochrome c] + 2 H(+)"],["RHEA%3A21464","thiocyanate + H2O + 2 H(+) = carbonyl sulfide + NH4(+)"]]},{"id":"GO:0019319","l":"hexose biosynthetic process","na":1,"nb":19,"a":[["Industrial_Bioreactor_Consortium.html","Industrial Bioleaching Reactor Consortium"]],"b":[["GO%3A0019315","D-allose biosynthetic process"],["GO%3A0046370","fructose biosynthetic process"],["GO%3A0042353","fucose biosynthetic process"],["GO%3A0046369","galactose biosynthetic process"],["GO%3A0006094","gluconeogenesis"],["GO%3A0019319","hexose biosynthetic process"]]},{"id":"CHEBI:16411","l":"indole-3-acetic acid","na":18,"nb":1,"a":[["Chlamydomonas_Methylobacterium_Mutualism.html","Chlamydomonas-Methylobacterium Mutualistic Consortium"],["Chlorella_Azospirillum_Synthetic_Mutualism.html","Chlorella-Azospirillum Synthetic Mutualism"],["Chlorella_Keystone_Taxa_Antifungal_SynCom.html","Chlorella fusca CHK0059 Keystone-Taxa Antifungal 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Bacterial Community"]],"b":[["IDPO%3A0000002","disorder"],["Pfam%3APF14861","Plant antimicrobial peptide"],["Pfam%3APF02041","Auxin binding protein"],["Pfam%3APF25436","BSD2 cysteine rich domain"],["Pfam%3APF23493","Cysteinyl-tRNA ligase anticodon binding domain"],["Pfam%3APF03330","Lytic transglycolase"]]},{"id":"CHEBI:17120","l":"hexanoate","na":1,"nb":17,"a":[["Clostridium_Autoethanogenum_Kluyveri_Syngas_Coculture.html","Clostridium autoethanogenum-Clostridium kluyveri Syngas Coculture"]],"b":[["EC%3A3.5.1.39","alkylamidase"],["RHEA%3A53496","1-hexanoyl-2-acyl-sn-glycero-3-phosphocholine + H2O = hexanoate + a 2-acyl-sn-glycero-3-phosphocholine + H(+)"],["RHEA%3A54464","1-octadecanoyl-2-hexanoyl-sn-glycero-3-phosphocholine + H2O = hexanoate + 1-octadecanoyl-sn-glycero-3-phosphocholine + H(+)"],["RHEA%3A47352","a hexanoate ester + H2O = an aliphatic alcohol + hexanoate + H(+)"],["RHEA%3A79351","hexanal + 2 Fe(III)-[cytochrome c] + H2O = hexanoate + 2 Fe(II)-[cytochrome c] + 3 H(+)"],["RHEA%3A67276","hexanal + NAD(+) + H2O = hexanoate + NADH + 2 H(+)"]]},{"id":"GO:0015940","l":"pantothenate biosynthetic process","na":1,"nb":17,"a":[["Variovorax_Cryptococcus_Vitamin_Mutualism_Microcosm.html","Variovorax-Cryptococcus Vitamin Cross-Feeding Microcosm"]],"b":[["GO%3A0015940","pantothenate biosynthetic process"],["NCBIfam%3ANF005087","2-dehydropantoate 2-reductase"],["NCBIfam%3ANF005092","2-dehydropantoate 2-reductase"],["NCBIfam%3ANF005093","2-dehydropantoate 2-reductase"],["NCBIfam%3ANF005094","2-dehydropantoate 2-reductase"],["NCBIfam%3ANF006083","2-dehydropantoate 2-reductase"]]},{"id":"GO:0006090","l":"pyruvate metabolic process","na":1,"nb":16,"a":[["Caragana_Korshinskii_CrossKingdom_Forage_SynCom.html","Caragana korshinskii Cross-Kingdom Forage Bio-Valorization SynCom"]],"b":[["GO%3A0061678","Entner-Doudoroff pathway"],["GO%3A0061718","glucose catabolic process to pyruvate"],["GO%3A0006096","glycolytic process"],["GO%3A0033508","L-glutamate fermentation"],["GO%3A0019617","protocatechuate catabolic process, meta-cleavage"],["GO%3A0042866","pyruvate biosynthetic process"]]},{"id":"GO:0006527","l":"L-arginine catabolic process","na":1,"nb":16,"a":[["Clostridium_Acetobutylicum_Ljungdahlii_Fusion_Coculture.html","Clostridium acetobutylicum-Clostridium ljungdahlii Syntrophic Fusion Coculture"]],"b":[["GO%3A0006527","L-arginine catabolic process"],["NCBIfam%3ATIGR01273","arginine decarboxylase"],["NCBIfam%3ANF002381","arginine deiminase"],["NCBIfam%3ATIGR01078","arginine deiminase"],["NCBIfam%3ANF007770","arginine N-succinyltransferase"],["NCBIfam%3ATIGR03244","arginine N-succinyltransferase"]]},{"id":"NCBITaxon:3847","l":"Glycine max","na":1,"nb":16,"a":[["Soybean_N_Fixation_sfSynCom.html","Soybean N-Fixation Simplified SynCom"]],"b":[["Pfam%3APF02095","Extensin-like protein"],["Pfam%3APF00477","Small hydrophilic plant seed protein"],["IDPO%3A0000013","pre-molten globule to order"],["Pfam%3APF08027","Albumin I chain b"],["Pfam%3APF10539","Development and cell death domain"],["Pfam%3APF03386","Early nodulin 93 ENOD93 protein"]]},{"id":"CHEBI:36080","l":"protein","na":1,"nb":15,"a":[["Aspergillus_Indium_LED_Recovery.html","Aspergillus Indium LCD Recovery Platform"]],"b":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A3.A.16","The Endoplasmic Reticular Retrotranslocon (ER-RT) Family"],["TCDB%3A3.A.27","The Endoplasmic Reticulum Membrane Protein Insertion Complex (EMC) Family"],["TCDB%3A9.A.57","The Extended-Synaptotagmin (E-Syt) Family"],["TCDB%3A3.A.13","The Filamentous Phage Exporter (FPhE) Family"],["TCDB%3A9.A.37","The Nuclear Import Tax Protein (Tax) Family"]]},{"id":"GO:0044010","l":"single-species biofilm formation","na":1,"nb":15,"a":[["Chlorella_Rhizobium_Bioflocculation.html","Chlorella-Rhizobium Bioflocculation"]],"b":[["ComplexPortal%3ACPX-4063","ChpBS toxin-antitoxin complex"],["ComplexPortal%3ACPX-4743","Curli secretion 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variant"]]},{"id":"NCBITaxon:2157","l":"Archaea","na":15,"nb":1,"a":[["ANME_SRB_Marine_Methane_Seep_Consortium.html","ANME-SRB Marine Methane Seep Consortium"],["Asgard_Wetland_Soil_Methanogenesis_Substrate_Community.html","Asgard Archaea Wetland Soil Methanogenesis-Substrate Community"],["BioModels_MODEL2407300002_Sponge_Holobiont_Network.html","BioModels MODEL2407300002 Sponge Holobiont Network"],["Hanford_300_Area_Unconfined_Aquifer_Community.html","Hanford 300 Area Unconfined Aquifer Community"],["Lac_Pavin_Stratified_Lake_Community.html","Lac Pavin Permanently Stratified Lake Community"],["MUCC_Freshwater_Wetland_Methane_Network_Community.html","MUCC Freshwater Wetland Methane-Cycling Network Community"]],"b":[["proteintraitsmech%3AORTHODB_LEVEL_2157","Archaea orthologous groups (OrthoDB)"]]},{"id":"GO:0009607","l":"response to biotic stimulus","na":1,"nb":14,"a":[["Coscinodiscus_Synthetic_Community.html","Coscinodiscus Synthetic Community"]],"b":[["GO%3A0071216","cellular response to biotic stimulus"],["GO%3A0009595","detection of biotic stimulus"],["GO%3A0036180","filamentous growth of a population of unicellular organisms in response to biotic stimulus"],["GO%3A0009607","response to biotic stimulus"],["GO%3A0043207","response to external biotic stimulus"],["GO%3A1990840","response to lectin"]]},{"id":"NCBITaxon:1061","l":"Rhodobacter capsulatus","na":1,"nb":14,"a":[["Cellulomonas_Rhodobacter_Cellulose_Photohydrogen_Coculture.html","Cellulomonas-Rhodobacter Cellulose Photohydrogen Coculture"]],"b":[["Pfam%3APF03703","Bacterial PH domain"],["Pfam%3APF01322","Cytochrome C'"],["Pfam%3APF03139","Vanadium/alternative nitrogenase delta subunit"],["Pfam%3APF09527","Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter"],["Pfam%3APF03270","Protein of unknown function, DUF269"],["Pfam%3APF11953","Domain of unknown function (DUF3470)"]]},{"id":"NCBITaxon:1140","l":"Synechococcus elongatus PCC 7942 = 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CO2"]]},{"id":"CHEBI:17847","l":"p-cresol","na":1,"nb":11,"a":[["Phenol_Carboxylation_Consortium.html","Phenol Carboxylation Consortium"]],"b":[["EC%3A1.14.13.236","toluene 4-monooxygenase"],["EC%3A1.17.9.1","4-methylphenol dehydrogenase (hydroxylating)"],["EC%3A4.1.1.83","4-hydroxyphenylacetate decarboxylase"],["EC%3A4.1.99.19","2-iminoacetate synthase"],["RHEA%3A22732","4-hydroxyphenylacetate + H(+) = 4-methylphenol + CO2"],["RHEA%3A56976","4-methylphenol + 2 oxidized [azurin] + H2O = 4-hydroxybenzyl alcohol + 2 reduced [azurin] + 2 H(+)"]]},{"id":"CHEBI:18212","l":"selenite(2-)","na":1,"nb":11,"a":[["East_River_Hillslope_Riparian_Transect_Community.html","East River Hillslope Riparian Transect Microbial Community"]],"b":[["EC%3A1.97.1.14","selenate reductase (quinol)"],["EC%3A1.97.1.9","selenate reductase (cytochrome c)"],["RHEA%3A80603","selenite + 2 Fe(III)-[cytochrome c] + H2O = 2 Fe(II)-[cytochrome] + selenate + 2 H(+)"],["RHEA%3A34903","selenite + 4 glutathione + 2 H(+) = selenodiglutathione + glutathione disulfide + 3 H2O"],["RHEA%3A14029","selenite + A + H2O = selenate + AH2"],["RHEA%3A51636","selenite + a quinone + H2O = selenate + a quinol"]]},{"id":"CHEBI:28009","l":"N-acetyl-beta-D-glucosamine","na":1,"nb":11,"a":[["MSC1_Dominant_Core.html","MSC-1 Dominant Core"]],"b":[["RHEA%3A85211","alpha-di-N-acetylchitobiose + H2O = N-acetyl-beta-D-glucosamine + N-acetyl-alpha-D-glucosamine"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A1.B.14","The Outer Membrane Receptor (OMR) Family"],["TCDB%3A4.A.1","The PTS Glucose-Glucoside (Glc) Family"],["TCDB%3A4.A.6","The PTS Mannose-Fructose-Sorbose (Man) Family"]]},{"id":"CHEBI:28685","l":"molybdenum atom","na":1,"nb":11,"a":[["PGM_Spent_Catalyst_Bioleaching.html","PGM Spent Catalyst Bioleaching Consortium"]],"b":[["proteintraitsmech%3ABIOLIP_MO","MO-binding site"],["proteintraitsmech%3AMETALPDB_MO_DINUCLEAR","dinuclear molybdenum 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Family"]]},{"id":"CHEBI:15075","l":"selenate","na":1,"nb":10,"a":[["East_River_Hillslope_Riparian_Transect_Community.html","East River Hillslope Riparian Transect Microbial Community"]],"b":[["EC%3A1.97.1.14","selenate reductase (quinol)"],["EC%3A1.97.1.9","selenate reductase (cytochrome c)"],["RHEA%3A34887","selenate(in) = selenate(out)"],["RHEA%3A72079","selenate(out) + 3 Na(+)(out) = selenate(in) + 3 Na(+)(in)"],["RHEA%3A34883","selenate(out) + ATP + H2O = selenate(in) + ADP + phosphate + H(+)"],["RHEA%3A80603","selenite + 2 Fe(III)-[cytochrome c] + H2O = 2 Fe(II)-[cytochrome] + selenate + 2 H(+)"]]},{"id":"CHEBI:15688","l":"acetoin","na":1,"nb":10,"a":[["Rice_Duckweed_Bacillus_SynCom.html","Rice-Duckweed Bacillus Biocontrol SynCom"]],"b":[["EC%3A2.2.1.4","acetoin--ribose-5-phosphate transaldolase"],["EC%3A2.3.1.190","acetoin dehydrogenase system"],["RHEA%3A54364","2 acetaldehyde = acetoin"],["RHEA%3A76879","3-aminobutan-2-ol + NAD(+) + H2O = acetoin + NH4(+) + NADH + H(+)"],["RHEA%3A76931","3-aminobutan-2-ol + NADP(+) + H2O = acetoin + NH4(+) + NADPH + H(+)"],["RHEA%3A54368","acetaldehyde + pyruvate + H(+) = acetoin + CO2"]]},{"id":"CHEBI:16581","l":"pregnenolone","na":1,"nb":10,"a":[["Suillus_Bacillus_Thiamine_Ectomycorrhizal_SynCom.html","Suillus clintonianus-Bacillus altitudinis Thiamine Cross-Feeding SynCom"]],"b":[["EC%3A1.14.14.19","steroid 17alpha-monooxygenase"],["EC%3A1.14.15.6","cholesterol monooxygenase (side-chain-cleaving)"],["RHEA%3A34343","(20R,22R)-20,22-dihydroxycholesterol + 2 reduced [adrenodoxin] + O2 + 2 H(+) = 4-methylpentanal + pregnenolone + 2 oxidized [adrenodoxin] + 2 H2O"],["RHEA%3A35739","6 reduced [adrenodoxin] + cholesterol + 3 O2 + 6 H(+) = 4-methylpentanal + pregnenolone + 6 oxidized [adrenodoxin] + 4 H2O"],["RHEA%3A52356","pregnenolone + 3'-phosphoadenylyl sulfate = pregnenolone sulfate + adenosine 3',5'-bisphosphate + H(+)"],["RHEA%3A43924","pregnenolone + NAD(+) = pregn-5-ene-3,20-dione + NADH + H(+)"]]},{"id":"CHEBI:17051","l":"fluoride","na":1,"nb":10,"a":[["Defined_Multispecies_Enamel_Caries_Model.html","Defined Multispecies Enamel Caries Model"]],"b":[["EC%3A2.5.1.63","adenosyl-fluoride synthase"],["EC%3A3.8.1.3","haloacetate dehalogenase"],["EC%3A3.8.2.2","diisopropyl-fluorophosphatase"],["RHEA%3A24100","diisopropyl fluorophosphate + H2O = diisopropyl phosphate + fluoride + 2 H(+)"],["RHEA%3A76159","fluoride(in) = fluoride(out)"],["RHEA%3A16661","fluoride + S-adenosyl-L-methionine = 5'-deoxy-5'-fluoroadenosine + L-methionine"]]},{"id":"GO:0006548","l":"L-histidine catabolic process","na":1,"nb":10,"a":[["Clostridium_Acetobutylicum_Ljungdahlii_Fusion_Coculture.html","Clostridium acetobutylicum-Clostridium ljungdahlii Syntrophic Fusion Coculture"]],"b":[["GO%3A0006548","L-histidine catabolic process"],["Reactome%3AR-HSA-70921","Histidine catabolism"],["proteintraitsmech%3ASEED_SUBSYSTEM_Histidine_Degradation","Histidine Degradation"],["NCBIfam%3ATIGR01227","formimidoylglutamase"],["NCBIfam%3ATIGR02022","formimidoylglutamate deiminase"],["NCBIfam%3ATIGR02024","glutamate formimidoyltransferase"]]},{"id":"GO:0070482","l":"response to oxygen levels","na":1,"nb":10,"a":[["Premature_Infant_Gut_Escherichia_Diametric_Ratio_Community.html","Premature Infant Gut Escherichia In-Situ Physiological-Condition Community"]],"b":[["ComplexPortal%3ACPX-3982","dosPC diguanylate cyclase/c-di-GMP phosphodiesterase complex"],["ComplexPortal%3ACPX-1882","HAP1 transcriptional repressor complex, SSA1 variant"],["ComplexPortal%3ACPX-1883","HAP1 transcriptional repressor complex, SSA2 variant"],["ComplexPortal%3ACPX-1276","HMC complex"],["GO%3A0071453","cellular response to oxygen levels"],["GO%3A0003032","detection of oxygen"]]},{"id":"GO:2000146","l":"negative regulation of cell motility","na":1,"nb":10,"a":[["Thermophilic_Pyrite_QS_Consortium.html","Thermophilic Pyrite Quorum Sensing Consortium"]],"b":[["GO%3A1905417","negative regulation of amoeboid sperm motility"],["GO%3A1902201","negative regulation of bacterial-type flagellum-dependent cell motility"],["GO%3A0030336","negative regulation of cell migration"],["GO%3A2000146","negative regulation of cell motility"],["GO%3A1902020","negative regulation of cilium-dependent cell motility"],["PANTHER%3APTHR28616","COILED-COIL DOMAIN-CONTAINING PROTEIN 125"]]},{"id":"NCBITaxon:316","l":"Stutzerimonas stutzeri","na":1,"nb":10,"a":[["Pseudomonas_stutzeri_Rhodococcus_Naphthalene_Biochar_Engineered_Consortium.html","Pseudomonas stutzeri + Rhodococcus Naphthalene-degrading Biochar-bridged Engineered Consortium"]],"b":[["Pfam%3APF12679","ABC-2 family transporter protein"],["Pfam%3APF09081","Glucan 1,4-alpha-maltotetraohydrolase, domain C"],["Pfam%3APF09459","Ethylbenzene dehydrogenase"],["Pfam%3APF08406","CbbQ/NirQ/NorQ C-terminal"],["Pfam%3APF11953","Domain of unknown function (DUF3470)"],["Pfam%3APF18793","Nitrous oxide reductase propeller repeat 2"]]},{"id":"NCBITaxon:853","l":"Faecalibacterium prausnitzii","na":1,"nb":10,"a":[["Human_Gut_FourMember_Proteome_Complementarity_Consortium.html","Human Gut Four-Member Proteome-Complementarity Consortium"]],"b":[["TED%3AAF-A0A2A7AJ69-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2A7AJ69-F1-model_v4_TED01"],["TED%3AAF-A0A329UNG0-F1-model_v4_TED05","TED highly-symmetric fold AF-A0A329UNG0-F1-model_v4_TED05"],["TED%3AAF-A0A3F3JVN3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A3F3JVN3-F1-model_v4_TED01"],["TED%3AAF-A0A564SWB8-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A564SWB8-F1-model_v4_TED02"],["TED%3AAF-A0A173SIF7-F1-model_v4_TED01","TED novel fold AF-A0A173SIF7-F1-model_v4_TED01"],["TED%3AAF-A0A173WYP6-F1-model_v4_TED01","TED novel fold AF-A0A173WYP6-F1-model_v4_TED01"]]},{"id":"CHEBI:18248","l":"iron atom","na":1,"nb":9,"a":[["Drought_Rhizosphere_Iron_Actinobacteria_Community.html","Drought-Induced Rhizosphere Iron-Enriched Actinobacteria Community"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_18248","requires Fe"],["proteintraitsmech%3AMETALPDB_FE_DINUCLEAR","dinuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_HEPTANUCLEAR","heptanuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_HEXANUCLEAR","hexanuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_MONONUCLEAR","mononuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_OCTANUCLEAR","octanuclear iron site"]]},{"id":"CHEBI:26710","l":"sodium chloride","na":9,"nb":1,"a":[["Coastal_Forested_Wetland_Seawater_Ion_Microcosm_Community.html","Coastal Forested Wetland Seawater-Ion Microcosm Community"],["Desert_Tomato_Salt_Stress_SynCom5.html","Desert-Derived Tomato Salt Stress SynCom5"],["Geobacter_Methanosarcina_DIET.html","Geobacter-Methanosarcina DIET Community"],["Populus_Salt_Tolerant_SynComs.html","Populus Salt-Tolerant Rhizosphere SynComs"],["SF356_Cellulose_Degrader.html","SF356 Thermophilic Cellulose-Degrading Community"],["Salar_Atacama_Lithium_Brine_Community.html","Salar de Atacama Lithium Brine Community"]],"b":[["TCDB%3A2.A.30","The Cation-Chloride Cotransporter (CCC) Family"]]},{"id":"GO:0009266","l":"response to temperature stimulus","na":1,"nb":9,"a":[["Industrial_Bioreactor_Consortium.html","Industrial Bioleaching Reactor Consortium"]],"b":[["GO%3A0071502","cellular response to temperature stimulus"],["GO%3A0016048","detection of temperature stimulus"],["GO%3A0009409","response to cold"],["GO%3A0009408","response to heat"],["GO%3A0009266","response to temperature stimulus"],["GO%3A0010378","temperature compensation of the circadian clock"]]},{"id":"GO:0043903","l":"regulation of biological process involved in symbiotic interaction","na":1,"nb":9,"a":[["Coscinodiscus_Synthetic_Community.html","Coscinodiscus Synthetic Community"]],"b":[["GO%3A0052372","modulation by symbiont of entry into host"],["GO%3A0140471","positive regulation of transepithelial migration of symbiont in host"],["GO%3A0043903","regulation of biological process involved in symbiotic interaction"],["GO%3A0075045","regulation of formation by symbiont of haustorium for nutrient acquisition from host"],["GO%3A1901252","regulation of intracellular transport of viral material"],["GO%3A0070949","regulation of neutrophil mediated killing of symbiont cell"]]},{"id":"NCBITaxon:1344414","l":"Trichoderma reesei RUT C-30","na":1,"nb":9,"a":[["Trichoderma_Streptomyces_Filamentous_Cellulose_Coculture.html","Trichoderma-Streptomyces Filamentous Cellulose Coculture"]],"b":[["Pfam%3APF00457","Glycosyl hydrolases family 11"],["Pfam%3APF01341","Glycosyl hydrolases family 6"],["PROSITE%3APS00155","Cutinase, serine active site"],["PROSITE%3APS00776","Glycosyl hydrolases family 11 (GH11) active site signature 1"],["PROSITE%3APS00777","Glycosyl hydrolases family 11 (GH11) active site signature 2"],["PROSITE%3APS00655","Glycosyl hydrolases family 6 signature 1"]]},{"id":"NCBITaxon:266","l":"Paracoccus 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AF-A0A7S3W9Q3-F1-model_v4_TED01"],["TED%3AAF-R1DPG1-F1-model_v4_TED01","TED highly-symmetric fold AF-R1DPG1-F1-model_v4_TED01"],["TED%3AAF-A0A7S3TQB6-F1-model_v4_TED02","TED novel fold AF-A0A7S3TQB6-F1-model_v4_TED02"],["TED%3AAF-R1BEB4-F1-model_v4_TED01","TED novel fold AF-R1BEB4-F1-model_v4_TED01"]]},{"id":"CHEBI:27698","l":"vanadium atom","na":1,"nb":8,"a":[["BioAsteroid_ISS_Chondrite_Biomining_Consortium.html","BioAsteroid ISS Chondrite Biomining Consortium"]],"b":[["proteintraitsmech%3AMETALPDB_V_DECANUCLEAR","decanuclear vanadium site"],["proteintraitsmech%3AMETALPDB_V_DINUCLEAR","dinuclear vanadium site"],["proteintraitsmech%3AMETALPDB_V_HEPTANUCLEAR","heptanuclear vanadium site"],["proteintraitsmech%3AMETALPDB_V_HEXANUCLEAR","hexanuclear vanadium site"],["proteintraitsmech%3AMETALPDB_V_MONONUCLEAR","mononuclear vanadium site"],["proteintraitsmech%3AMETALPDB_V_OCTANUCLEAR","octanuclear vanadium site"]]},{"id":"GO:0042402","l":"biogenic amine catabolic 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complex"]]},{"id":"CHEBI:16810","l":"2-oxoglutarate(2-)","na":1,"nb":672,"a":[["Chlorochromatium_Aggregatum_Phototrophic_Consortium.html","Chlorochromatium aggregatum Phototrophic Consortium"]],"b":[["EC%3A1.1.1.286","isocitrate--homoisocitrate dehydrogenase"],["EC%3A1.1.1.399","2-oxoglutarate reductase"],["EC%3A1.1.1.41","isocitrate dehydrogenase (NAD(+))"],["EC%3A1.1.1.42","isocitrate dehydrogenase (NADP(+))"],["EC%3A1.1.5.13","(S)-2-hydroxyglutarate dehydrogenase"],["EC%3A1.1.99.2","L-2-hydroxyglutarate dehydrogenase"]]},{"id":"GO:0006412","l":"translation","na":1,"nb":455,"a":[["Clostridium_Acetobutylicum_Ljungdahlii_Fusion_Coculture.html","Clostridium acetobutylicum-Clostridium ljungdahlii Syntrophic Fusion Coculture"]],"b":[["GO%3A0002181","cytoplasmic translation"],["GO%3A0032543","mitochondrial translation"],["GO%3A0032544","plastid translation"],["GO%3A0140241","translation at synapse"],["GO%3A0006412","translation"],["Reactome%3AR-HSA-72766","Translation"]]},{"id":"GO:0055085","l":"transmembrane transport","na":1,"nb":439,"a":[["Model_Cyanobacterial_Consortia_Core_Microbiome.html","Model Cyanobacterial Consortia Core Microbiome"]],"b":[["ComplexPortal%3ACPX-271","5-hydroxytryptamine-3A/B receptor complex"],["ComplexPortal%3ACPX-275","5-hydroxytryptamine-3A/B receptor complex"],["ComplexPortal%3ACPX-277","5-hydroxytryptamine-3A/B receptor complex"],["ComplexPortal%3ACPX-276","5-hydroxytryptamine-3A/C receptor complex"],["ComplexPortal%3ACPX-272","5-hydroxytryptamine-3A/D receptor complex"],["ComplexPortal%3ACPX-273","5-hydroxytryptamine-3A/E receptor complex"]]},{"id":"CHEBI:29985","l":"L-glutamate(1-)","na":1,"nb":426,"a":[["Clostridium_Acetobutylicum_Ljungdahlii_Fusion_Coculture.html","Clostridium acetobutylicum-Clostridium ljungdahlii Syntrophic Fusion Coculture"]],"b":[["EC%3A1.14.11.76","L-glutamate 3(R)-hydroxylase"],["EC%3A1.2.1.88","L-glutamate 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CO2"],["RHEA%3A56976","4-methylphenol + 2 oxidized [azurin] + H2O = 4-hydroxybenzyl alcohol + 2 reduced [azurin] + 2 H(+)"]]},{"id":"CHEBI:18212","l":"selenite(2-)","na":1,"nb":11,"a":[["East_River_Hillslope_Riparian_Transect_Community.html","East River Hillslope Riparian Transect Microbial Community"]],"b":[["EC%3A1.97.1.14","selenate reductase (quinol)"],["EC%3A1.97.1.9","selenate reductase (cytochrome c)"],["RHEA%3A80603","selenite + 2 Fe(III)-[cytochrome c] + H2O = 2 Fe(II)-[cytochrome] + selenate + 2 H(+)"],["RHEA%3A34903","selenite + 4 glutathione + 2 H(+) = selenodiglutathione + glutathione disulfide + 3 H2O"],["RHEA%3A14029","selenite + A + H2O = selenate + AH2"],["RHEA%3A51636","selenite + a quinone + H2O = selenate + a quinol"]]},{"id":"CHEBI:28009","l":"N-acetyl-beta-D-glucosamine","na":1,"nb":11,"a":[["MSC1_Dominant_Core.html","MSC-1 Dominant Core"]],"b":[["RHEA%3A85211","alpha-di-N-acetylchitobiose + H2O = N-acetyl-beta-D-glucosamine + N-acetyl-alpha-D-glucosamine"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A1.B.14","The Outer Membrane Receptor (OMR) Family"],["TCDB%3A4.A.1","The PTS Glucose-Glucoside (Glc) Family"],["TCDB%3A4.A.6","The PTS Mannose-Fructose-Sorbose (Man) Family"]]},{"id":"CHEBI:28685","l":"molybdenum atom","na":1,"nb":11,"a":[["PGM_Spent_Catalyst_Bioleaching.html","PGM Spent Catalyst Bioleaching Consortium"]],"b":[["proteintraitsmech%3ABIOLIP_MO","MO-binding site"],["proteintraitsmech%3AMETALPDB_MO_DINUCLEAR","dinuclear molybdenum site"],["proteintraitsmech%3AMETALPDB_MO_HEPTANUCLEAR","heptanuclear molybdenum site"],["proteintraitsmech%3AMETALPDB_MO_HEXANUCLEAR","hexanuclear molybdenum site"],["proteintraitsmech%3AMETALPDB_MO_MONONUCLEAR","mononuclear molybdenum site"],["proteintraitsmech%3AMETALPDB_MO_MULTINUCLEAR","multinuclear molybdenum site"]]},{"id":"CHEBI:49807","l":"lead(2+)","na":1,"nb":11,"a":[["Australian_Lead_Zinc_Polymetallic.html","Australian Lead Zinc Polymetallic Tailings Consortium"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_49807","requires lead(2+)"],["RHEA%3A52580","Pb(2+)(in) + ATP + H2O = Pb(2+)(out) + ADP + phosphate + H(+)"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.4","The Cation Diffusion Facilitator (CDF) Family"],["TCDB%3A2.A.11","The Citrate-Mg2+:H+ (CitM) Citrate-Ca2+:H+ (CitH) Symporter (CitMHS) Family"],["TCDB%3A1.A.87","The Mechanosensitive Calcium Channel (MCA) Family"]]},{"id":"NCBITaxon:266","l":"Paracoccus denitrificans","na":1,"nb":11,"a":[["Phylogenetically_Diverse_Denitrifying_SynCom.html","Phylogenetically Diverse Denitrifying SynCom"]],"b":[["Pfam%3APF07835","Bacterial aa3 type cytochrome c oxidase subunit IV"],["Pfam%3APF04828","Glutathione-dependent formaldehyde-activating enzyme"],["Pfam%3APF16448","LapD/MoxY periplasmic domain"],["Pfam%3APF17267","Family of unknown function (DUF5333)"],["Pfam%3APF17272","Family of unknown function (DUF5337)"],["PROSITE%3APS00364","Bacterial quinoprotein dehydrogenases signature 2"]]},{"id":"CHEBI:15075","l":"selenate","na":1,"nb":10,"a":[["East_River_Hillslope_Riparian_Transect_Community.html","East River Hillslope Riparian Transect Microbial Community"]],"b":[["EC%3A1.97.1.14","selenate reductase (quinol)"],["EC%3A1.97.1.9","selenate reductase (cytochrome c)"],["RHEA%3A34887","selenate(in) = selenate(out)"],["RHEA%3A72079","selenate(out) + 3 Na(+)(out) = selenate(in) + 3 Na(+)(in)"],["RHEA%3A34883","selenate(out) + ATP + H2O = selenate(in) + ADP + phosphate + H(+)"],["RHEA%3A80603","selenite + 2 Fe(III)-[cytochrome c] + H2O = 2 Fe(II)-[cytochrome] + selenate + 2 H(+)"]]},{"id":"CHEBI:15688","l":"acetoin","na":1,"nb":10,"a":[["Rice_Duckweed_Bacillus_SynCom.html","Rice-Duckweed Bacillus Biocontrol SynCom"]],"b":[["EC%3A2.2.1.4","acetoin--ribose-5-phosphate transaldolase"],["EC%3A2.3.1.190","acetoin dehydrogenase system"],["RHEA%3A54364","2 acetaldehyde = acetoin"],["RHEA%3A76879","3-aminobutan-2-ol + NAD(+) + H2O = acetoin + NH4(+) + NADH + H(+)"],["RHEA%3A76931","3-aminobutan-2-ol + NADP(+) + H2O = acetoin + NH4(+) + NADPH + H(+)"],["RHEA%3A54368","acetaldehyde + pyruvate + H(+) = acetoin + CO2"]]},{"id":"CHEBI:16581","l":"pregnenolone","na":1,"nb":10,"a":[["Suillus_Bacillus_Thiamine_Ectomycorrhizal_SynCom.html","Suillus clintonianus-Bacillus altitudinis Thiamine Cross-Feeding SynCom"]],"b":[["EC%3A1.14.14.19","steroid 17alpha-monooxygenase"],["EC%3A1.14.15.6","cholesterol monooxygenase (side-chain-cleaving)"],["RHEA%3A34343","(20R,22R)-20,22-dihydroxycholesterol + 2 reduced [adrenodoxin] + O2 + 2 H(+) = 4-methylpentanal + pregnenolone + 2 oxidized [adrenodoxin] + 2 H2O"],["RHEA%3A35739","6 reduced [adrenodoxin] + cholesterol + 3 O2 + 6 H(+) = 4-methylpentanal + pregnenolone + 6 oxidized [adrenodoxin] + 4 H2O"],["RHEA%3A52356","pregnenolone + 3'-phosphoadenylyl sulfate = pregnenolone sulfate + adenosine 3',5'-bisphosphate + H(+)"],["RHEA%3A43924","pregnenolone + NAD(+) = pregn-5-ene-3,20-dione + NADH + H(+)"]]},{"id":"CHEBI:17051","l":"fluoride","na":1,"nb":10,"a":[["Defined_Multispecies_Enamel_Caries_Model.html","Defined Multispecies Enamel Caries Model"]],"b":[["EC%3A2.5.1.63","adenosyl-fluoride synthase"],["EC%3A3.8.1.3","haloacetate dehalogenase"],["EC%3A3.8.2.2","diisopropyl-fluorophosphatase"],["RHEA%3A24100","diisopropyl fluorophosphate + H2O = diisopropyl phosphate + fluoride + 2 H(+)"],["RHEA%3A76159","fluoride(in) = fluoride(out)"],["RHEA%3A16661","fluoride + S-adenosyl-L-methionine = 5'-deoxy-5'-fluoroadenosine + L-methionine"]]},{"id":"GO:0006548","l":"L-histidine catabolic process","na":1,"nb":10,"a":[["Clostridium_Acetobutylicum_Ljungdahlii_Fusion_Coculture.html","Clostridium acetobutylicum-Clostridium ljungdahlii Syntrophic Fusion 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oxygen"]]},{"id":"GO:2000146","l":"negative regulation of cell motility","na":1,"nb":10,"a":[["Thermophilic_Pyrite_QS_Consortium.html","Thermophilic Pyrite Quorum Sensing Consortium"]],"b":[["GO%3A1905417","negative regulation of amoeboid sperm motility"],["GO%3A1902201","negative regulation of bacterial-type flagellum-dependent cell motility"],["GO%3A0030336","negative regulation of cell migration"],["GO%3A2000146","negative regulation of cell motility"],["GO%3A1902020","negative regulation of cilium-dependent cell motility"],["PANTHER%3APTHR28616","COILED-COIL DOMAIN-CONTAINING PROTEIN 125"]]},{"id":"NCBITaxon:316","l":"Stutzerimonas stutzeri","na":1,"nb":10,"a":[["Pseudomonas_stutzeri_Rhodococcus_Naphthalene_Biochar_Engineered_Consortium.html","Pseudomonas stutzeri + Rhodococcus Naphthalene-degrading Biochar-bridged Engineered Consortium"]],"b":[["Pfam%3APF12679","ABC-2 family transporter protein"],["Pfam%3APF09081","Glucan 1,4-alpha-maltotetraohydrolase, domain 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AF-A0A1H6I5C3-F1-model_v4_TED03"],["TED%3AAF-A0A1K2AQV3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1K2AQV3-F1-model_v4_TED01"],["TED%3AAF-A0A1M7IZN6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1M7IZN6-F1-model_v4_TED01"],["TED%3AAF-A0A1H6IY18-F1-model_v4_TED01","TED novel fold AF-A0A1H6IY18-F1-model_v4_TED01"],["TED%3AAF-A0A1K1WYY5-F1-model_v4_TED01","TED novel fold AF-A0A1K1WYY5-F1-model_v4_TED01"],["TED%3AAF-A0A1K2C3A7-F1-model_v4_TED01","TED novel fold AF-A0A1K2C3A7-F1-model_v4_TED01"]]},{"id":"NCBITaxon:1352","l":"Enterococcus faecium","na":17,"nb":8,"a":[["catheter-device-ncit-c50344.html","Catheter Device"],["animal-house-envo-00003040.html","animal house"],["hospital-envo-00002173.html","hospital"],["egg-food-product-foodon-00001274.html","egg food product"],["environmental-system-determined-by-an-organism-envo-01001000.html","environmental system determined by an organism"],["feces-uberon-0001988.html","feces"]],"b":[["Pfam%3APF01721","Class II 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AF-A0A2T6UWI4-F1-model_v4_TED01"],["TED%3AAF-A0A1Q9JB12-F1-model_v4_TED01","TED novel fold AF-A0A1Q9JB12-F1-model_v4_TED01"]]},{"id":"NCBITaxon:1404","l":"Priestia megaterium","na":8,"nb":8,"a":[["organic-waste-material-envo-00002873.html","organic waste material"],["engineered-product-habitatmech-bacdive-9c253e43c0.html","Engineered-product"],["lab-synthesis-habitatmech-bacdive-0e92e77cd4.html","Lab-synthesis"],["medical-product-habitatmech-bacdive-5209e5b46e.html","Medical-product"],["oil-spill-envo-00002061.html","oil spill"],["temperate-envo-01000206.html","temperate"]],"b":[["Pfam%3APF01890","Cobalamin synthesis G C-terminus"],["Pfam%3APF11761","Cobalamin biosynthesis central region"],["Pfam%3APF11760","Cobalamin synthesis G N-terminal"],["Pfam%3APF02570","Precorrin-8X methylmutase"],["PROSITE%3APS00304","Small, acid-soluble spore proteins, alpha/beta type, signature 1"],["PROSITE%3APS00684","Small, acid-soluble spore proteins, alpha/beta type, signature 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jejuni","na":10,"nb":7,"a":[["bovine-associated-environment-habitatmech-bacdive-a4a67c4a7f.html","bovine-associated environment"],["canid-associated-environment-habitatmech-bacdive-33fde10528.html","canid-associated environment"],["caprine-associated-environment-habitatmech-bacdive-4d3086a839.html","caprine-associated environment"],["environmental-system-determined-by-an-organism-envo-01001000.html","environmental system determined by an organism"],["feces-uberon-0001988.html","feces"],["human-associated-environment-habitatmech-gold-cd0b0940e5.html","human-associated environment"]],"b":[["Pfam%3APF04439","Streptomycin adenylyltransferase"],["TED%3AAF-A0A696J2C3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A696J2C3-F1-model_v4_TED01"],["TED%3AAF-A0A825M6H4-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A825M6H4-F1-model_v4_TED01"],["TED%3AAF-A0A5T0SBG5-F1-model_v4_TED01","TED novel fold AF-A0A5T0SBG5-F1-model_v4_TED01"],["TED%3AAF-A0A698JVM3-F1-model_v4_TED03","TED novel fold AF-A0A698JVM3-F1-model_v4_TED03"],["TED%3AAF-A0A824N1N8-F1-model_v4_TED01","TED novel fold AF-A0A824N1N8-F1-model_v4_TED01"]]},{"id":"NCBITaxon:28901","l":"Salmonella enterica","na":7,"nb":10,"a":[["environmental-system-determined-by-an-organism-envo-01001000.html","environmental system determined by an organism"],["feces-uberon-0001988.html","feces"],["human-associated-environment-habitatmech-gold-cd0b0940e5.html","human-associated environment"],["pseudostem-bto-0005992.html","pseudostem"],["infection-habitatmech-bacdive-995fbdda26.html","Infection"],["patient-habitatmech-bacdive-b8fea19ee8.html","Patient"]],"b":[["TED%3AAF-A0A5T2E4X7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A5T2E4X7-F1-model_v4_TED01"],["TED%3AAF-A0A5Y4BP44-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A5Y4BP44-F1-model_v4_TED01"],["TED%3AAF-A0A623P6F3-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A623P6F3-F1-model_v4_TED02"],["TED%3AAF-A0A721BDS7-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A721BDS7-F1-model_v4_TED02"],["TED%3AAF-A0A743P324-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A743P324-F1-model_v4_TED01"],["TED%3AAF-A0A757VWR3-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A757VWR3-F1-model_v4_TED02"]]},{"id":"NCBITaxon:1314","l":"Streptococcus pyogenes","na":9,"nb":7,"a":[["estuarine-biome-envo-01000020.html","estuarine biome"],["alga-associated-environment-habitatmech-gold-02383c20a7.html","alga-associated environment"],["epithelial-cell-bto-0000414.html","epithelial cell"],["nasopharynx-bto-0000662.html","nasopharynx"],["skin-of-body-uberon-0002097.html","skin of body"],["throat-bto-0000828.html","throat"]],"b":[["Pfam%3APF13585","CHU_C Type IX secretion signal domain"],["Pfam%3APF24547","Domain of unknown function (DUF7601)"],["Pfam%3APF08998","Bacterial epsilon antitoxin"],["Pfam%3APF06280","Fn3-like domain"],["Pfam%3APF02274","Arginine deiminase"],["Pfam%3APF13734","Spi protease inhibitor"]]},{"id":"NCBITaxon:358","l":"Agrobacterium 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AF-A0A4S3H3T1-F1-model_v4_TED02"]]},{"id":"NCBITaxon:391625","l":"Plesiocystis pacifica SIR-1","na":5,"nb":6,"a":[["coral-reef-envo-00000150.html","coral reef"],["marine-oligotrophic-desert-envo-01000073.html","marine oligotrophic desert"],["aquatic-environment-envo-01000317.html","aquatic environment"],["bulk-soil-envo-00005802.html","bulk soil"],["surface-soil-envo-02000059.html","surface soil"]],"b":[["TED%3AAF-A6FXI2-F1-model_v4_TED01","TED highly-symmetric fold AF-A6FXI2-F1-model_v4_TED01"],["TED%3AAF-A6G0J0-F1-model_v4_TED01","TED highly-symmetric fold AF-A6G0J0-F1-model_v4_TED01"],["TED%3AAF-A6G9Q2-F1-model_v4_TED01","TED highly-symmetric fold AF-A6G9Q2-F1-model_v4_TED01"],["TED%3AAF-A6G861-F1-model_v4_TED02","TED novel fold AF-A6G861-F1-model_v4_TED02"],["TED%3AAF-A6GGD7-F1-model_v4_TED01","TED novel fold AF-A6GGD7-F1-model_v4_TED01"],["TED%3AAF-A6GI73-F1-model_v4_TED02","TED novel fold AF-A6GI73-F1-model_v4_TED02"]]},{"id":"NCBITaxon:549","l":"Pantoea 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AF-A0A3Q0JAD0-F1-model_v4_TED01"],["TED%3AAF-A0A1S4EQL6-F1-model_v4_TED01","TED novel fold AF-A0A1S4EQL6-F1-model_v4_TED01"]]},{"id":"NCBITaxon:1359","l":"Lactococcus lactis subsp. cremoris","na":3,"nb":8,"a":[["b-lymphocyte-bto-0000776.html","B-lymphocyte"],["peripheral-blood-mononuclear-cell-bto-0001025.html","peripheral blood mononuclear cell"],["spleen-bto-0001281.html","spleen"]],"b":[["Pfam%3APF16873","Putative abortive phage resistance protein AbiGii toxin"],["Pfam%3APF21368","AI2M/AI1M-like, HNH endonuclease"],["Pfam%3APF09136","Glucodextranase, domain B"],["Pfam%3APF10899","Putative abortive phage resistance protein AbiGi, antitoxin"],["Pfam%3APF04556","DpnII restriction endonuclease"],["Pfam%3APF04369","Lactococcin-like family"]]},{"id":"NCBITaxon:246197","l":"Myxococcus xanthus DK1622","na":3,"nb":8,"a":[["aquatic-environment-envo-01000317.html","aquatic environment"],["agricultural-soil-envo-00002259.html","agricultural soil"],["bulk-soil-envo-00005802.html","bulk 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AF-A0A6T9Y0H6-F1-model_v4_TED01"]]},{"id":"NCBITaxon:335543","l":"","na":3,"nb":3,"a":[["anaerobic-sludge-envo-00002129.html","anaerobic sludge"],["submerged-bed-envo-00000501.html","submerged bed"],["surface-soil-envo-02000059.html","surface soil"]],"b":[["Pfam%3APF03746","LamB/YcsF family"],["Pfam%3APF03588","Leucyl/phenylalanyl-tRNA protein transferase"],["Pfam%3APF05167","Uncharacterised ACR (DUF711)"]]},{"id":"NCBITaxon:340102","l":"","na":3,"nb":3,"a":[["saline-marsh-envo-00000054.html","saline marsh"],["silty-sediment-envo-01000119.html","silty sediment"],["solfatara-envo-00000217.html","solfatara"]],"b":[["Pfam%3APF22039","Imidazolonepropionase-like composite domain, bacteria"],["Pfam%3APF01949","Endonuclease dU"],["TED%3AAF-A4WK08-F1-model_v4_TED01","TED novel fold AF-A4WK08-F1-model_v4_TED01"]]},{"id":"NCBITaxon:386415","l":"","na":3,"nb":3,"a":[["myocardium-bto-0000901.html","myocardium"],["reticuloendothelial-system-bto-0001174.html","reticuloendothelial 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AF-A0A2A3TVW3-F1-model_v4_TED01"],["TED%3AAF-A0A7Z6MPZ0-F1-model_v4_TED02","TED novel fold AF-A0A7Z6MPZ0-F1-model_v4_TED02"]]},{"id":"NCBITaxon:574521","l":"Escherichia coli O127:H6 (strain E2348/69 / EPEC)","na":2,"nb":13,"a":[["enterocyte-bto-0000398.html","enterocyte"],["gut-epithelium-bto-0000956.html","gut epithelium"]],"b":[["IDPO%3A0000006","order"],["IDPO%3A0000045","phosphorylation display site"],["Pfam%3APF02369","Bacterial Ig-like domain (group 1)"],["Pfam%3APF05307","Bundlin"],["Pfam%3APF27328","EcpD C-terminal domain"],["Pfam%3APF11924","Inverse autotransporter, beta-domain"]]},{"id":"NCBITaxon:58172","l":"Paenibacillus sp.","na":12,"nb":2,"a":[["factory-envo-01000536.html","factory"],["plant-associated-environment-envo-01001001.html","plant-associated 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AF-Q01YB9-F1-model_v4_TED05"],["TED%3AAF-Q02DA0-F1-model_v4_TED01","TED highly-symmetric fold AF-Q02DA0-F1-model_v4_TED01"]]},{"id":"NCBITaxon:31234","l":"Caenorhabditis remanei","na":2,"nb":11,"a":[["eutrophic-water-envo-00002224.html","eutrophic water"],["container-of-an-intermittent-water-body-envo-00000549.html","container of an intermittent water body"]],"b":[["TED%3AAF-A0A260YVB9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A260YVB9-F1-model_v4_TED01"],["TED%3AAF-A0A2P4UZM7-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A2P4UZM7-F1-model_v4_TED02"],["TED%3AAF-A0A6A5GBX3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A6A5GBX3-F1-model_v4_TED01"],["TED%3AAF-A0A6A5H6H5-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A6A5H6H5-F1-model_v4_TED01"],["TED%3AAF-A0A6A5HK12-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A6A5HK12-F1-model_v4_TED02"],["TED%3AAF-E3LF65-F1-model_v4_TED02","TED highly-symmetric fold AF-E3LF65-F1-model_v4_TED02"]]},{"id":"NCBITaxon:190650","l":"Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)","na":2,"nb":10,"a":[["blanket-bog-envo-00000511.html","blanket bog"],["peat-soil-envo-00005774.html","peat soil"]],"b":[["IDPO%3A0000060","self-assembly"],["Pfam%3APF27198","FlaEY third domain"],["Pfam%3APF22367","Flagellar hook protein FlgE, third domain"],["Pfam%3APF03799","Cell division protein FtsQ/DivIB, C-terminal"],["Pfam%3APF27294","HfaA"],["Pfam%3APF27277","Holdfast attachment protein D"]]},{"id":"NCBITaxon:853","l":"Faecalibacterium prausnitzii","na":2,"nb":10,"a":[["coral-reef-envo-00000150.html","coral reef"],["tropical-envo-01000204.html","tropical"]],"b":[["TED%3AAF-A0A2A7AJ69-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2A7AJ69-F1-model_v4_TED01"],["TED%3AAF-A0A329UNG0-F1-model_v4_TED05","TED highly-symmetric fold AF-A0A329UNG0-F1-model_v4_TED05"],["TED%3AAF-A0A3F3JVN3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A3F3JVN3-F1-model_v4_TED01"],["TED%3AAF-A0A564SWB8-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A564SWB8-F1-model_v4_TED02"],["TED%3AAF-A0A173SIF7-F1-model_v4_TED01","TED novel fold AF-A0A173SIF7-F1-model_v4_TED01"],["TED%3AAF-A0A173WYP6-F1-model_v4_TED01","TED novel fold AF-A0A173WYP6-F1-model_v4_TED01"]]},{"id":"NCBITaxon:166","l":"Treponema sp.","na":2,"nb":9,"a":[["fresh-animal-manure-envo-00003032.html","fresh animal manure"],["skin-environment-envo-2100003.html","skin environment"]],"b":[["TED%3AAF-A0A351Z2H3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A351Z2H3-F1-model_v4_TED01"],["TED%3AAF-A0A356K0W2-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A356K0W2-F1-model_v4_TED02"],["TED%3AAF-A0A3B8WTM6-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A3B8WTM6-F1-model_v4_TED02"],["TED%3AAF-A0A3C1HX51-F1-model_v4_TED03","TED highly-symmetric fold AF-A0A3C1HX51-F1-model_v4_TED03"],["TED%3AAF-A0A521IH80-F1-model_v4_TED01","TED highly-symmetric fold 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AIM24"],["Pfam%3APF17052","Cap associated factor"],["PROSITE%3APS00885","EPSP synthase signature 2"],["TED%3AAF-A5DUG9-F1-model_v4_TED01","TED novel fold AF-A5DUG9-F1-model_v4_TED01"]]},{"id":"NCBITaxon:1184267","l":"Pseudobdellovibrio exovorus JSS","na":6,"nb":2,"a":[["stream-envo-00000023.html","stream"],["biome-envo-00000428.html","biome"],["desert-biome-envo-01000179.html","desert biome"],["meadow-soil-envo-00005761.html","meadow soil"],["mixed-forest-biome-envo-01000198.html","mixed forest biome"],["temperate-mixed-forest-biome-envo-01000212.html","temperate mixed forest biome"]],"b":[["TED%3AAF-M4VA20-F1-model_v4_TED02","TED highly-symmetric fold AF-M4VA20-F1-model_v4_TED02"],["TED%3AAF-M4VEE5-F1-model_v4_TED01","TED highly-symmetric fold AF-M4VEE5-F1-model_v4_TED01"]]},{"id":"NCBITaxon:34003","l":"Paracoccus aminophilus","na":6,"nb":2,"a":[["eutrophic-water-envo-00002224.html","eutrophic water"],["small-river-biome-envo-00000890.html","small river 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AF-A0A533VS28-F1-model_v4_TED01"],["TED%3AAF-A0A538P7I2-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A538P7I2-F1-model_v4_TED02"],["TED%3AAF-A0A662PPJ2-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A662PPJ2-F1-model_v4_TED01"]]},{"id":"NCBITaxon:211586","l":"Shewanella oneidensis MR-1","na":1,"nb":10,"a":[["underground-water-envo-00005792.html","underground water"]],"b":[["Pfam%3APF27445","Adaptation to cold protein A"],["Pfam%3APF27450","AtcB C-terminal domain"],["Pfam%3APF27486","AtcB N-terminal domain"],["Pfam%3APF02464","CinA C-terminal domain"],["Pfam%3APF13657","HipA N-terminal domain"],["Pfam%3APF01934","Ribonuclease HepT-like"]]},{"id":"NCBITaxon:266264","l":"Cupriavidus metallidurans CH34","na":1,"nb":10,"a":[["aquifer-envo-00012408.html","aquifer"]],"b":[["Pfam%3APF25973","CzcB-like, barrel-sandwich hybrid domain"],["Pfam%3APF09828","ChrB, C-terminal domain"],["Pfam%3APF20229","Protein ChrB, N-terminal"],["Pfam%3APF01923","Cobalamin 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ubonensis","na":1,"nb":6,"a":[["plant-associated-environment-envo-01001001.html","plant-associated environment"]],"b":[["TED%3AAF-A0A118H7W5-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A118H7W5-F1-model_v4_TED01"],["TED%3AAF-A0A853WTK8-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A853WTK8-F1-model_v4_TED01"],["TED%3AAF-A0A104J6D5-F1-model_v4_TED03","TED novel fold AF-A0A104J6D5-F1-model_v4_TED03"],["TED%3AAF-A0A104Z719-F1-model_v4_TED01","TED novel fold AF-A0A104Z719-F1-model_v4_TED01"],["TED%3AAF-A0A106QCV3-F1-model_v4_TED01","TED novel fold AF-A0A106QCV3-F1-model_v4_TED01"],["TED%3AAF-A0A124U5S7-F1-model_v4_TED02","TED novel fold AF-A0A124U5S7-F1-model_v4_TED02"]]},{"id":"NCBITaxon:106590","l":"Cupriavidus necator","na":6,"nb":1,"a":[["humid-habitatmech-bacdive-0fa0234f43.html","Humid"],["microbial-habitatmech-bacdive-e01be4868f.html","Microbial"],["sludge-envo-00002044.html","sludge"],["forested-area-envo-00000111.html","forested 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11"],["Pfam%3APF03422","Carbohydrate binding module (family 6)"],["PROSITE%3APS00776","Glycosyl hydrolases family 11 (GH11) active site signature 1"],["PROSITE%3APS00777","Glycosyl hydrolases family 11 (GH11) active site signature 2"]]},{"id":"NCBITaxon:1871047","l":"Chryseobacterium sp.","na":6,"nb":7,"a":[["dust-ash-habitatmech-bacdive-4b8650dee7.html","Dust-Ash"],["waste-gas-habitatmech-bacdive-3eec8fcfc4.html","waste gas"],["leaf-po-0025034.html","leaf"],["bioremediation-habitatmech-bacdive-99663bb3ee.html","Bioremediation"],["humid-habitatmech-bacdive-0fa0234f43.html","Humid"],["waste-habitatmech-bacdive-36df85e4a4.html","Waste"]],"b":[["TED%3AAF-A0A2W6XQ62-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2W6XQ62-F1-model_v4_TED01"],["TED%3AAF-A0A2W6YLD3-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A2W6YLD3-F1-model_v4_TED02"],["TED%3AAF-A0A5N7U1L3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A5N7U1L3-F1-model_v4_TED01"],["TED%3AAF-A0A3D4JZX5-F1-model_v4_TED04","TED novel fold AF-A0A3D4JZX5-F1-model_v4_TED04"],["TED%3AAF-A0A3N7GZ20-F1-model_v4_TED01","TED novel fold AF-A0A3N7GZ20-F1-model_v4_TED01"],["TED%3AAF-A0A5N7YYR2-F1-model_v4_TED01","TED novel fold AF-A0A5N7YYR2-F1-model_v4_TED01"]]},{"id":"NCBITaxon:1085","l":"Rhodospirillum rubrum","na":19,"nb":5,"a":[["biofilm-envo-00002034.html","biofilm"],["brackish-water-body-envo-01001321.html","brackish water body"],["deep-marine-sediment-envo-00002113.html","deep marine sediment"],["liquid-water-envo-00002006.html","liquid water"],["tidal-mudflat-envo-00000241.html","tidal mudflat"],["river-envo-00000022.html","river"]],"b":[["Pfam%3APF00556","Antenna complex alpha/beta subunit"],["Pfam%3APF09527","Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter"],["Pfam%3APF07357","Dinitrogenase reductase ADP-ribosyltransferase (DRAT)"],["PROSITE%3APS00968","Antenna complexes alpha subunits signature"],["MCSA%3A797","ribulose-bisphosphate carboxylase (type II)"]]},{"id":"NCBITaxon:615","l":"Serratia 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EVYSYLRYTGTPIPDNPNDK"]]},{"id":"NCBITaxon:100226","l":"Streptomyces coelicolor A3(2)","na":4,"nb":34,"a":[["bioreactor-envo-00002123.html","bioreactor"],["human-construction-envo-00000070.html","human construction"],["sediment-envo-00002007.html","sediment"],["woodland-area-envo-00000109.html","woodland area"]],"b":[["Pfam%3APF25848","Rodlin protein"],["Pfam%3APF13420","Acetyltransferase (GNAT) domain"],["Pfam%3APF21086","ACT domain"],["Pfam%3APF03756","A-factor biosynthesis hotdog domain"],["Pfam%3APF26381","BREX System ATPase PglY protein 5th domain"],["Pfam%3APF26382","BREX System ATPase PglY protein 6th domain"]]},{"id":"NCBITaxon:1422","l":"Geobacillus stearothermophilus","na":4,"nb":31,"a":[["bottled-canned-packed-food-habitatmech-bacdive-2acf2810c5.html","Bottled,-canned,-packed-food"],["high-temperature-environment-envo-01000305.html","high temperature environment"],["juice-natural-habitatmech-bacdive-0b7fa25ca9.html","Juice-natural"],["compost-soil-envo-00005747.html","compost soil"]],"b":[["Pfam%3APF09154","Alpha-amylase C-terminal"],["Pfam%3APF27529","AMPT"],["Pfam%3APF24856","L-arabinose isomerase central domain"],["Pfam%3APF02610","L-arabinose isomerase N-terminal domain"],["Pfam%3APF11762","L-arabinose isomerase C-terminal domain"],["Pfam%3APF17727","CtsR C-terminal dimerization domain"]]},{"id":"NCBITaxon:510516","l":"Aspergillus oryzae (strain ATCC 42149 / RIB 40)","na":4,"nb":29,"a":[["blanket-bog-envo-00000511.html","blanket bog"],["mountain-pass-envo-00000084.html","mountain pass"],["peat-soil-envo-00005774.html","peat soil"],["stream-sediment-envo-00002127.html","stream sediment"]],"b":[["Pfam%3APF09260","Alpha-amylase, domain C"],["Pfam%3APF28338","AclK C-terminal domain"],["Pfam%3APF09206","Alpha-L-arabinofuranosidase B, catalytic"],["Pfam%3APF28380","Sesquiterpene cyclase astC-like C-terminal domain"],["Pfam%3APF13364","Beta-galactosidase second all-beta domain"],["Pfam%3APF10435","Beta-galactosidase, domain 2"]]},{"id":"NCBITaxon:3055","l":"Chlamydomonas reinhardtii","na":4,"nb":28,"a":[["coastal-sea-water-envo-00002150.html","coastal sea water"],["large-river-biome-envo-00000887.html","large river biome"],["marine-oligotrophic-desert-envo-01000073.html","marine oligotrophic desert"],["pond-water-envo-00002228.html","pond water"]],"b":[["Pfam%3APF01333","Apocytochrome F, C-terminal"],["Pfam%3APF16639","Apocytochrome F, N-terminal"],["Pfam%3APF00430","ATP synthase B/B' CF(0)"],["Pfam%3APF00401","ATP synthase, Delta/Epsilon chain, long alpha-helix domain"],["Pfam%3APF21771","CFAP58 central coiled coil"],["Pfam%3APF27956","CFAP99 V-shaped coiled-coil domain"]]},{"id":"NCBITaxon:1428","l":"Bacillus thuringiensis","na":4,"nb":21,"a":[["fruit-seed-habitatmech-bacdive-ba016fe448.html","Fruit-Seed"],["plant-associated-environment-envo-01001001.html","plant-associated environment"],["contaminant-habitatmech-bacdive-4d06ff4bb5.html","Contaminant"],["microbial-habitatmech-bacdive-e01be4868f.html","Microbial"]],"b":[["Pfam%3APF10014","2OG-Fe dioxygenase"],["Pfam%3APF28265","Lipoprotein N-acylation protein LnsA-like"],["Pfam%3APF16403","Bacterial surface protein, Ig-like domain"],["Pfam%3APF03944","delta endotoxin"],["Pfam%3APF03945","delta endotoxin, N-terminal domain"],["IEDB%3A125782","epitope CLRIPMTDK"]]},{"id":"NCBITaxon:33","l":"Myxococcus fulvus","na":21,"nb":4,"a":[["fruit-seed-habitatmech-bacdive-ba016fe448.html","Fruit-Seed"],["aquatic-macrophyte-associated-environment-habitatmech-bacdive-38260eea00.html","aquatic macrophyte-associated environment"],["area-of-moss-dominated-vegetation-envo-01000890.html","area of moss-dominated vegetation"],["bovine-associated-environment-habitatmech-bacdive-a4a67c4a7f.html","bovine-associated environment"],["caprine-associated-environment-habitatmech-bacdive-4d3086a839.html","caprine-associated environment"],["environmental-system-determined-by-an-organism-envo-01001000.html","environmental system determined by an organism"]],"b":[["TED%3AAF-A0A511SVC1-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A511SVC1-F1-model_v4_TED01"],["TED%3AAF-A0A511SU64-F1-model_v4_TED01","TED novel fold AF-A0A511SU64-F1-model_v4_TED01"],["TED%3AAF-A0A511T2U3-F1-model_v4_TED02","TED novel fold AF-A0A511T2U3-F1-model_v4_TED02"],["TED%3AAF-A0A511T9F8-F1-model_v4_TED05","TED novel fold AF-A0A511T9F8-F1-model_v4_TED05"]]},{"id":"NCBITaxon:169963","l":"Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)","na":4,"nb":18,"a":[["brain-bto-0000142.html","brain"],["heart-bto-0000562.html","heart"],["macrophage-cell-line-bto-0002278.html","macrophage cell line"],["p-388d1-cell-bto-0000984.html","P-388D1 cell"]],"b":[["Pfam%3APF17936","Bacterial Ig domain"],["Pfam%3APF06778","Chlorite dismutase"],["Pfam%3APF05737","Collagen binding domain"],["Pfam%3APF09479","Listeria-Bacteroides repeat 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AF-A0A496M1E6-F1-model_v4_TED02"],["TED%3AAF-A0A496M2R1-F1-model_v4_TED06","TED novel fold AF-A0A496M2R1-F1-model_v4_TED06"]]},{"id":"NCBITaxon:1311","l":"Streptococcus agalactiae","na":6,"nb":4,"a":[["kidney-bto-0000671.html","kidney"],["milk-uberon-0001913.html","milk"],["oropharynx-bto-0005257.html","oropharynx"],["urine-bto-0001419.html","urine"],["urogenital-system-bto-0003091.html","urogenital system"],["vagina-bto-0000243.html","vagina"]],"b":[["Pfam%3APF19567","Capsular polysaccharide synthesis, CpsB/CapC"],["Pfam%3APF16828","GAG-binding domain on surface antigen"],["Pfam%3APF27244","GtfB middle domain"],["Pfam%3APF07373","CAMP factor (Cfa)"]]},{"id":"NCBITaxon:1366","l":"","na":4,"nb":5,"a":[["animal-house-envo-00003040.html","animal house"],["animal-produced-food-natural-habitatmech-bacdive-57e74dd487.html","Animal-produced-food-natural"],["cropland-biome-envo-01000245.html","cropland biome"],["temperate-broadleaf-forest-biome-envo-01000202.html","temperate broadleaf forest 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AF-A0A825MHY8-F1-model_v4_TED03"],["TED%3AAF-A0A828DMV9-F1-model_v4_TED01","TED novel fold AF-A0A828DMV9-F1-model_v4_TED01"]]},{"id":"NCBITaxon:305","l":"Ralstonia solanacearum","na":4,"nb":5,"a":[["plant-associated-environment-envo-01001001.html","plant-associated environment"],["pseudostem-bto-0005992.html","pseudostem"],["xylem-bto-0001468.html","xylem"],["scrubland-area-envo-00000300.html","scrubland area"]],"b":[["Pfam%3APF14897","EpsG family"],["TED%3AAF-A0A7I8FQZ6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A7I8FQZ6-F1-model_v4_TED01"],["TED%3AAF-A0A7H1MI34-F1-model_v4_TED01","TED novel fold AF-A0A7H1MI34-F1-model_v4_TED01"],["TED%3AAF-A0A7I8FKL4-F1-model_v4_TED01","TED novel fold AF-A0A7I8FKL4-F1-model_v4_TED01"],["TED%3AAF-A0A850FKB0-F1-model_v4_TED01","TED novel fold AF-A0A850FKB0-F1-model_v4_TED01"]]},{"id":"NCBITaxon:529","l":"Brucella 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enterotoxin alpha chain"],["Pfam%3APF09101","Exotoxin A binding"],["Pfam%3APF09009","Exotoxin A catalytic"],["Pfam%3APF09102","Exotoxin A, targeting"]]},{"id":"NCBITaxon:378806","l":"Stigmatella aurantiaca DW4/3-1","na":4,"nb":4,"a":[["marine-oligotrophic-desert-envo-01000073.html","marine oligotrophic desert"],["aquatic-environment-envo-01000317.html","aquatic environment"],["orchard-envo-00000115.html","orchard"],["surface-soil-envo-02000059.html","surface soil"]],"b":[["TED%3AAF-Q098I8-F1-model_v4_TED01","TED highly-symmetric fold AF-Q098I8-F1-model_v4_TED01"],["TED%3AAF-E3FRW3-F1-model_v4_TED01","TED novel fold AF-E3FRW3-F1-model_v4_TED01"],["TED%3AAF-E3G0M4-F1-model_v4_TED01","TED novel fold AF-E3G0M4-F1-model_v4_TED01"],["TED%3AAF-Q08VS7-F1-model_v4_TED01","TED novel fold AF-Q08VS7-F1-model_v4_TED01"]]},{"id":"NCBITaxon:83449","l":"Cystobacter ferrugineus","na":4,"nb":4,"a":[["leporid-associated-environment-habitatmech-bacdive-82dc7d11b9.html","leporid-associated 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highly-symmetric fold AF-A0A357M9E9-F1-model_v4_TED01"]]},{"id":"NCBITaxon:234267","l":"Candidatus Solibacter usitatus Ellin6076","na":11,"nb":2,"a":[["marine-salt-marsh-biome-envo-01000022.html","marine salt marsh biome"],["pond-water-envo-00002228.html","pond water"],["aquatic-environment-envo-01000317.html","aquatic environment"],["desert-sand-envo-00005800.html","desert sand"],["environmental-material-envo-00010483.html","environmental material"],["mud-envo-01000001.html","mud"]],"b":[["TED%3AAF-Q01YB9-F1-model_v4_TED05","TED highly-symmetric fold AF-Q01YB9-F1-model_v4_TED05"],["TED%3AAF-Q02DA0-F1-model_v4_TED01","TED highly-symmetric fold AF-Q02DA0-F1-model_v4_TED01"]]},{"id":"NCBITaxon:31234","l":"Caenorhabditis remanei","na":2,"nb":11,"a":[["eutrophic-water-envo-00002224.html","eutrophic water"],["container-of-an-intermittent-water-body-envo-00000549.html","container of an intermittent water body"]],"b":[["TED%3AAF-A0A260YVB9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A260YVB9-F1-model_v4_TED01"],["TED%3AAF-A0A2P4UZM7-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A2P4UZM7-F1-model_v4_TED02"],["TED%3AAF-A0A6A5GBX3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A6A5GBX3-F1-model_v4_TED01"],["TED%3AAF-A0A6A5H6H5-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A6A5H6H5-F1-model_v4_TED01"],["TED%3AAF-A0A6A5HK12-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A6A5HK12-F1-model_v4_TED02"],["TED%3AAF-E3LF65-F1-model_v4_TED02","TED highly-symmetric fold AF-E3LF65-F1-model_v4_TED02"]]},{"id":"NCBITaxon:190485","l":"","na":2,"nb":10,"a":[["fruit-bto-0000486.html","fruit"],["vascular-tissue-bto-0001432.html","vascular tissue"]],"b":[["Pfam%3APF28546","TonB transmembrane helix"],["Pfam%3APF00325","Bacterial regulatory proteins, crp family"],["Pfam%3APF06165","Glycosyl hydrolase 94, supersandwich domain"],["Pfam%3APF12019","Type II transport protein GspH"],["Pfam%3APF22059","Glucuronosyltransferase GumK, N-terminal domain"],["Pfam%3APF14307","Glycosyltransferase WbsX"]]},{"id":"NCBITaxon:190650","l":"Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)","na":2,"nb":10,"a":[["blanket-bog-envo-00000511.html","blanket bog"],["peat-soil-envo-00005774.html","peat soil"]],"b":[["IDPO%3A0000060","self-assembly"],["Pfam%3APF27198","FlaEY third domain"],["Pfam%3APF22367","Flagellar hook protein FlgE, third domain"],["Pfam%3APF03799","Cell division protein FtsQ/DivIB, C-terminal"],["Pfam%3APF27294","HfaA"],["Pfam%3APF27277","Holdfast attachment protein D"]]},{"id":"NCBITaxon:1911","l":"Streptomyces griseus","na":2,"nb":10,"a":[["fungi-associated-environment-envo-01001041.html","fungi-associated environment"],["agricultural-soil-envo-00002259.html","agricultural soil"]],"b":[["Pfam%3APF13207","AAA domain"],["Pfam%3APF27054","Beta-methylindole-3-pyruvate reductase C-terminal domain"],["Pfam%3APF26558","3-dehydroquinate synthase II C-terminal domain"],["Pfam%3APF01959","3-dehydroquinate synthase II 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AF-A0A1M5HMT5-F1-model_v4_TED01"]]},{"id":"NCBITaxon:107401","l":"Tenacibaculum maritimum","na":12,"nb":1,"a":[["deep-marine-sediment-envo-00002113.html","deep marine sediment"],["low-tide-zone-envo-00000319.html","low tide zone"],["marine-reef-envo-01000143.html","marine reef"],["marine-reef-biome-envo-01000029.html","marine reef biome"],["marine-salt-marsh-biome-envo-01000022.html","marine salt marsh biome"],["marine-water-body-envo-00001999.html","marine water body"]],"b":[["TED%3AAF-A0A5S9T7W6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A5S9T7W6-F1-model_v4_TED01"]]},{"id":"NCBITaxon:1596","l":"Lactobacillus gasseri","na":12,"nb":1,"a":[["biofilm-envo-00002034.html","biofilm"],["catheter-device-ncit-c50344.html","Catheter Device"],["city-envo-00000856.html","city"],["egg-food-product-foodon-00001274.html","egg food product"],["human-associated-environment-habitatmech-gold-cd0b0940e5.html","human-associated 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HC2"],["Pfam%3APF05475","Pgp3 C-terminal domain"],["Pfam%3APF22368","Response regulator protein ChxR, N-terminal domain"],["Pfam%3APF01345","CLIPPER domain"],["Pfam%3APF07577","Domain of Unknown Function (DUF1547)"],["Pfam%3APF03503","Chlamydia cysteine-rich outer membrane protein 3"]]},{"id":"NCBITaxon:5061","l":"Aspergillus niger","na":1,"nb":12,"a":[["intertidal-sediment-envo-00002179.html","intertidal sediment"]],"b":[["Pfam%3APF17433","Glycosyl hydrolase family 49 N-terminal Ig-like domain"],["PROSITE%3APS00820","Glucoamylase active site region signature"],["PROSITE%3APS00920","Nitrilases / cyanide hydratase signature 1"],["PROSITE%3APS00502","Polygalacturonase active site"],["Pfam%3APF18841","Beta solenoid repeat from Dextranase"],["Pfam%3APF03718","Glycosyl hydrolase family 49"]]},{"id":"NCBITaxon:882","l":"Nitratidesulfovibrio vulgaris str. 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synthase"],["RHEA%3A56700","(2S)-3-(1H-indol-3-yl)-2-isocyanopropanoate + 2-oxoglutarate + O2 + H(+) = 3-[(Z)-2-isocyanoethenyl]-1H-indole + succinate + 2 CO2 + H2O"],["RHEA%3A17349","3-[(Z)-2-isocyanoethenyl]-1H-indole + (2E)-geranyl diphosphate = 3-geranyl-3-[(Z)-2-isocyanoethenyl]-1H-indole + diphosphate"]],"b":[["antibacterial/3-z-2-isocyanovinyl-indole.html","3-[(Z)-2-isocyanovinyl]indole"]]},{"id":"CHEBI:140662","l":"2,4-diacetylphloroglucinol(1−)","na":4,"nb":1,"a":[["EC%3A2.3.1.272","2-acetylphloroglucinol acetyltransferase"],["EC%3A3.7.1.24","2,4-diacetylphloroglucinol hydrolase"],["RHEA%3A48236","2 2-acetylphloroglucinol = 2,4-diacetylphloroglucinol + 1,3,5-trihydroxybenzene + H(+)"],["RHEA%3A59184","2,4-diacetylphloroglucinol + H2O = 2-acetylphloroglucinol + acetate"]],"b":[["antifungal/2-4-diacetylphloroglucinol-1.html","2,4-diacetylphloroglucinol(1−)"]]},{"id":"CHEBI:16786","l":"vestitone","na":4,"nb":1,"a":[["EC%3A1.1.1.348","(3R)-2'-hydroxyisoflavanone reductase"],["EC%3A1.3.1.45","2'-hydroxyisoflavone reductase"],["RHEA%3A35403","(3R,4R)-7,2'-dihydroxy-4'-methoxyisoflavanol + NADP(+) = (3R)-vestitone + NADPH + H(+)"],["RHEA%3A22560","(3R)-vestitone + NADP(+) = 2'-hydroxyformononetin + NADPH + 2 H(+)"]],"b":[["antibacterial/vestitone.html","vestitone"]]},{"id":"CHEBI:17302","l":"pentadecanal","na":4,"nb":1,"a":[["EC%3A1.11.1.3","fatty-acid peroxidase"],["RHEA%3A68480","(2R)-2-hydroperoxyhexadecanoate + H(+) = pentadecanal + CO2 + H2O"],["RHEA%3A55212","(2R)-hydroxyhexadecanoyl-CoA = pentadecanal + formyl-CoA"],["RHEA%3A23960","hexadecanoate + 2 H2O2 + H(+) = pentadecanal + CO2 + 3 H2O"]],"b":[["unspecified/pentadecanal.html","pentadecanal"]]},{"id":"CHEBI:192702","l":"ladanein","na":4,"nb":1,"a":[["RHEA%3A73435","apigenin 4',7-dimethyl ether + reduced [NADPH--hemoprotein reductase] + O2 = ladanein + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A73247","ladanein + S-adenosyl-L-methionine = salvigenin + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A73111","scutellarein 4'-methyl ether + S-adenosyl-L-methionine = ladanein + S-adenosyl-L-homocysteine"],["RHEA%3A73239","scutellarein 7-methyl ether + S-adenosyl-L-methionine = ladanein + S-adenosyl-L-homocysteine + H(+)"]],"b":[["antiviral/ladanein.html","ladanein"]]},{"id":"CHEBI:24043","l":"","na":4,"nb":1,"a":[["EC%3A1.14.19.76","flavone synthase II"],["EC%3A1.14.20.5","flavone synthase I"],["RHEA%3A10448","a flavanone + 2-oxoglutarate + O2 = a flavone + succinate + CO2 + H2O"],["RHEA%3A57680","a flavanone + reduced [NADPH--hemoprotein reductase] + O2 = a flavone + oxidized [NADPH--hemoprotein reductase] + 2 H2O + H(+)"]],"b":[["antibacterial/flavocillin.html","flavocillin"]]},{"id":"CHEBI:2448","l":"actinorhodin","na":4,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"],["proteintraitsmech%3ABIOLIP_ZCT","ZCT-binding site"]],"b":[["unspecified/actinorhodin.html","actinorhodin"]]},{"id":"CHEBI:25675","l":"","na":1,"nb":4,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"]],"b":[["antifungal/oligomycin-a.html","oligomycin A"],["antifungal/oligomycin-d.html","oligomycin D"],["unspecified/oligomycin-b.html","oligomycin B"],["unspecified/oligomycin-c.html","oligomycin C"]]},{"id":"CHEBI:26580","l":"","na":1,"nb":4,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"]],"b":[["antibacterial/rifaximin.html","rifaximin"],["antimycobacterial/rifampicin.html","rifampicin"],["antimycobacterial/rifamycin-sv.html","rifamycin SV"],["antimycobacterial/rifapentine.html","rifapentine"]]},{"id":"CHEBI:27659","l":"","na":4,"nb":1,"a":[["EC%3A1.2.1.23","2-oxoaldehyde dehydrogenase (NAD(+))"],["EC%3A1.2.1.49","2-oxoaldehyde dehydrogenase (NADP(+))"],["RHEA%3A22276","2-oxoaldehyde + NAD(+) + H2O = a 2-oxocarboxylate + NADH + 2 H(+)"],["RHEA%3A18129","2-oxoaldehyde + NADP(+) + H2O = a 2-oxocarboxylate + NADPH + 2 H(+)"]],"b":[["antibacterial/4-hydroxy-2-oxobutanal.html","4-hydroxy-2-oxobutanal"]]},{"id":"CHEBI:27856","l":"","na":4,"nb":1,"a":[["EC%3A3.5.1.4","amidase"],["RHEA%3A85603","acetamide = acetonitrile + H2O"],["RHEA%3A45048","acetamide + H2O = acetate + NH4(+)"],["RHEA%3A51648","N(6)-acetyl-L-lysyl-[protein] + O2 + H2O = acetamide + (S)-2-amino-6-oxohexanoyl-[protein] + H2O2"]],"b":[["unspecified/acetylblasticidin-s.html","acetylblasticidin S"]]},{"id":"CHEBI:28327","l":"naringenin 7-O-β-D-glucoside","na":4,"nb":1,"a":[["EC%3A2.4.1.185","flavanone 7-O-beta-glucosyltransferase"],["RHEA%3A69671","(2S)-naringenin 7-O-beta-D-glucoside + H2O = (2S)-naringenin + beta-D-glucose"],["RHEA%3A67356","(2S)-naringenin 7-O-beta-D-glucoside + malonyl-CoA = (2S)-naringenin 7-O-(6-O-malonyl-beta-D-glucoside) + CoA"],["RHEA%3A65152","(2S)-naringenin + UDP-alpha-D-glucose = (2S)-naringenin 7-O-beta-D-glucoside + UDP + H(+)"]],"b":[["antibacterial/naringenin-7-o-%CE%B2-d-glucoside.html","naringenin 7-O-β-D-glucoside"]]},{"id":"CHEBI:28913","l":"(2E)-hexenal","na":4,"nb":1,"a":[["RHEA%3A60988","(E)-hex-2-en-1-ol + NAD(+) = (E)-hex-2-enal + NADH + H(+)"],["RHEA%3A58424","(E)-hex-2-en-1-ol + NADP(+) = (E)-hex-2-enal + NADPH + H(+)"],["RHEA%3A77419","(E)-hex-2-enal + hydrogen cyanide = (2S,3E)-2-hydroxyhept-3-enenitrile"],["RHEA%3A50776","hexanal + NADP(+) = (E)-hex-2-enal + NADPH + H(+)"]],"b":[["antibacterial/2e-hexenal.html","(2E)-hexenal"]]},{"id":"CHEBI:28927","l":"sakuranetin","na":4,"nb":1,"a":[["EC%3A2.1.1.232","naringenin 7-O-methyltransferase"],["RHEA%3A31539","(2S)-naringenin + S-adenosyl-L-methionine = (2S)-sakuranetin + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A73431","(2S)-sakuranetin + reduced [NADPH--hemoprotein reductase] + O2 = (2S)-7-methylcarthamidin + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A73255","(2S)-sakuranetin + S-adenosyl-L-methionine = (2S)-naringenin 4',7-dimethyl ether + S-adenosyl-L-homocysteine + H(+)"]],"b":[["antimycobacterial/sakuranetin.html","sakuranetin"]]},{"id":"CHEBI:31144","l":"8-demethyltetracenomycin C","na":4,"nb":1,"a":[["EC%3A1.14.13.200","tetracenomycin A2 monooxygenase-diooxygenase"],["EC%3A2.4.1.331","8-demethyltetracenomycin C L-rhamnosyltransferase"],["RHEA%3A42848","8-demethyltetracenomycin C + dTDP-beta-L-rhamnose = 8-demethyl-8-alpha-L-rhamnosyl-tetracenomycin C + dTDP + H(+)"],["RHEA%3A76467","tetracenomycin B2 + 2 NADPH + 2 O2 + 2 H(+) = 8-demethyltetracenomycin C + 2 NADP(+) + H2O"]],"b":[["unspecified/8-demethyltetracenomycin-c.html","8-demethyltetracenomycin C"]]},{"id":"CHEBI:33859","l":"","na":1,"nb":4,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"]],"b":[["antibacterial/oxolinic-acid.html","oxolinic acid"],["antifungal/1-2-3-benzothiadiazole-7-carboxylic-acid.html","1,2,3-benzothiadiazole-7-carboxylic acid"],["antifungal/phenazine-1-carboxylic-acid.html","phenazine-1-carboxylic acid"],["antifungal/piperonylic-acid.html","piperonylic acid"]]},{"id":"CHEBI:34848","l":"mevastatin","na":4,"nb":1,"a":[["RHEA%3A51668","mevastatin + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = pravastatin lactone + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O"],["RHEA%3A62744","mevastatin + H2O = compactin diol lactone + (S)-2-methylbutanoate + H(+)"],["RHEA%3A63044","mevastatin + H2O = mevinic carboxylate + H(+)"],["proteintraitsmech%3ABIOLIP_2UO","2UO-binding site"]],"b":[["antifungal/mevastatin.html","mevastatin"]]},{"id":"CHEBI:3508","l":"ceftazidime","na":4,"nb":1,"a":[["TCDB%3A8.A.213","The Bon Domain-containing Protein (Bon DP) Family"],["TCDB%3A1.B.1","The General Bacterial Porin (GBP) Family"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"],["TCDB%3A2.C.1","The TonB-ExbB-ExbD/TolA-TolQ-TolR Outer Membrane Receptor Energizers and Stabilizers (TonB/TolA) Family"]],"b":[["antibacterial/ceftazidime.html","ceftazidime"]]},{"id":"CHEBI:45744","l":"N-acetyl-β-neuraminic acid","na":4,"nb":1,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.21","The Solute:Sodium Symporter (SSS) Family"],["TCDB%3A2.A.56","The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family"],["proteintraitsmech%3ABIOLIP_SLB","SLB-binding site"]],"b":[["antiviral/n-acetyl-%CE%B2-neuraminic-acid.html","N-acetyl-β-neuraminic acid"]]},{"id":"CHEBI:46081","l":"fluconazole","na":4,"nb":1,"a":[["RHEA%3A61916","fluconazole(in) + ATP + H2O = fluconazole(out) + ADP + phosphate + H(+)"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["proteintraitsmech%3ABIOLIP_TPF","TPF-binding site"]],"b":[["antifungal/fluconazole.html","fluconazole"]]},{"id":"CHEBI:46634","l":"","na":1,"nb":4,"a":[["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["antibacterial/1-carbapenem-3-carboxylic-acid.html","1-carbapenem-3-carboxylic acid"],["antibacterial/carbapenem-mm22383.html","carbapenem MM22383"],["antibacterial/ertapenem.html","ertapenem"],["antibacterial/meropenem.html","meropenem"]]},{"id":"CHEBI:50477","l":"","na":1,"nb":4,"a":[["RHEA%3A47348","a butanoate ester + H2O = an aliphatic alcohol + butanoate + H(+)"]],"b":[["antibacterial/caminoside-a.html","caminoside A"],["antimycobacterial/caseargrewiin-b.html","caseargrewiin B"],["antiviral/clathsterol-disulfonic-acid.html","clathsterol disulfonic acid"],["antiviral/clathsterol.html","clathsterol"]]},{"id":"CHEBI:51460","l":"albaflavenone","na":4,"nb":1,"a":[["EC%3A1.14.15.39","epi-isozizaene 5-monooxygenase"],["RHEA%3A25988","(5R)-albaflavenol + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = albaflavenone + 2 oxidized [2Fe-2S]-[ferredoxin] + 2 H2O"],["RHEA%3A25980","(5S)-albaflavenol + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = albaflavenone + 2 oxidized [2Fe-2S]-[ferredoxin] + 2 H2O"],["RHEA%3A32439","(+)-epi-isozizaene + 4 reduced [2Fe-2S]-[ferredoxin] + 2 O2 + 4 H(+) = albaflavenone + 4 oxidized [2Fe-2S]-[ferredoxin] + 3 H2O"]],"b":[["unspecified/albaflavenone.html","albaflavenone"]]},{"id":"CHEBI:5169","l":"fraxetin","na":4,"nb":1,"a":[["EC%3A1.14.11.60","scopoletin 8-hydroxylase"],["EC%3A1.14.14.164","fraxetin 5-hydroxylase"],["RHEA%3A57844","fraxetin + reduced [NADPH--hemoprotein reductase] + O2 = sideretin (reduced form) + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A57848","scopoletin + 2-oxoglutarate + O2 = fraxetin + succinate + CO2"]],"b":[["antibacterial/fraxetin.html","fraxetin"]]},{"id":"CHEBI:55429","l":"cephamycin","na":1,"nb":4,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"]],"b":[["antibacterial/cefminox.html","cefminox"],["antibacterial/cefotetan.html","cefotetan"],["antibacterial/cefoxitin.html","cefoxitin"],["unspecified/cephamycin-c.html","cephamycin C"]]},{"id":"CHEBI:66331","l":"xanthohumol","na":4,"nb":1,"a":[["EC%3A2.1.1.338","desmethylxanthohumol 6'-O-methyltransferase"],["EC%3A2.1.1.339","xanthohumol 4-O-methyltransferase"],["RHEA%3A51696","desmethylxanthohumol + S-adenosyl-L-methionine = xanthohumol + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A51704","xanthohumol + S-adenosyl-L-methionine = 4-O-methylxanthohumol + S-adenosyl-L-homocysteine + H(+)"]],"b":[["antiviral/xanthohumol.html","xanthohumol"]]},{"id":"CHEBI:67246","l":"(+)-lariciresinol","na":4,"nb":1,"a":[["EC%3A1.23.1.1","(+)-pinoresinol reductase"],["EC%3A1.23.1.2","(+)-lariciresinol reductase"],["RHEA%3A34419","(+)-lariciresinol + NADP(+) = (+)-pinoresinol + NADPH + H(+)"],["RHEA%3A34423","(-)-secoisolariciresinol + NADP(+) = (+)-lariciresinol + NADPH + H(+)"]],"b":[["antifungal/lariciresinol.html","(+)-lariciresinol"]]},{"id":"CHEBI:69023","l":"preaustinoid A","na":4,"nb":1,"a":[["RHEA%3A65144","berkeleyone A + 2-oxoglutarate + O2 = preaustinoid A + succinate + CO2 + H2O"],["RHEA%3A65192","preaustinoid A + 2 2-oxoglutarate + 2 O2 = berkeleytrione + 2 succinate + 2 CO2 + H2O"],["RHEA%3A65168","preaustinoid A + AH2 + O2 = preaustinoid A1 + A + H2O"],["RHEA%3A65180","protoaustinoid B + AH2 + O2 = preaustinoid A + A + H2O"]],"b":[["antibacterial/preaustinoid-a.html","preaustinoid A"]]},{"id":"CHEBI:71311","l":"pyrazine-2-carboxylic acid","na":4,"nb":1,"a":[["ARO%3A3004267","antibiotic resistant pncA"],["ARO%3A3004721","Mycobacterium tuberculosis rpsA mutations conferring resistance to pyrazinamide"],["ARO%3A3004722","pyrazinamide resistant rpsA"],["proteintraitsmech%3ABIOLIP_VGL","VGL-binding site"]],"b":[["antimycobacterial/pyrazine-2-carboxylic-acid.html","pyrazine-2-carboxylic acid"]]},{"id":"CHEBI:74023","l":"dioscin","na":4,"nb":1,"a":[["EC%3A3.2.1.189","dioscin glycosidase (diosgenin-forming)"],["EC%3A3.2.1.190","dioscin glycosidase (3-O-beta-D-Glc-diosgenin-forming)"],["RHEA%3A38939","dioscin + 2 H2O = diosgenin 3-O-beta-D-glucoside + 2 L-rhamnopyranose"],["RHEA%3A36827","dioscin + 3 H2O = diosgenin + 2 L-rhamnopyranose + D-glucose"]],"b":[["antifungal/dioscin.html","dioscin"]]},{"id":"CHEBI:77980","l":"aclacinomycin A zwitterion","na":4,"nb":1,"a":[["EC%3A1.1.3.45","aclacinomycin-N oxidase"],["EC%3A1.3.3.14","aclacinomycin-A oxidase"],["RHEA%3A37791","aclacinomycin A + O2 = aclacinomycin Y + H2O2"],["RHEA%3A37423","aclacinomycin N + O2 = aclacinomycin A + H2O2"]],"b":[["unspecified/aclacinomycin-a-zwitterion.html","aclacinomycin A zwitterion"]]},{"id":"CHEBI:78283","l":"8-demethyl-8-(α-L-rhamnosyl)tetracenomycin C","na":4,"nb":1,"a":[["EC%3A2.1.1.305","8-demethyl-8-alpha-L-rhamnosyl tetracenomycin-C 2'-O-methyltransferase"],["EC%3A2.4.1.331","8-demethyltetracenomycin C L-rhamnosyltransferase"],["RHEA%3A41540","8-demethyl-8-alpha-L-rhamnosyl-tetracenomycin C + S-adenosyl-L-methionine = 8-demethyl-8-(2-O-methyl-alpha-L-rhamnosyl)-tetracenomycin C + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A42848","8-demethyltetracenomycin C + dTDP-beta-L-rhamnose = 8-demethyl-8-alpha-L-rhamnosyl-tetracenomycin C + dTDP + H(+)"]],"b":[["unspecified/8-demethyl-8-%CE%B1-l-rhamnosyl-tetracenomycin-c.html","8-demethyl-8-(α-L-rhamnosyl)tetracenomycin C"]]},{"id":"CHEBI:78285","l":"8-demethyl-8-(2-O-methyl-α-L-rhamnosyl)tetracenomycin C","na":4,"nb":1,"a":[["EC%3A2.1.1.305","8-demethyl-8-alpha-L-rhamnosyl tetracenomycin-C 2'-O-methyltransferase"],["EC%3A2.1.1.306","8-demethyl-8-(2-methoxy-alpha-L-rhamnosyl)-tetracenomycin-C 3'-O- methyltransferase"],["RHEA%3A41544","8-demethyl-8-(2-O-methyl-alpha-L-rhamnosyl)-tetracenomycin C + S-adenosyl-L-methionine = 8-demethyl-8-(2,3-di-O-methyl-alpha-L-rhamnosyl)-tetracenomycin C + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A41540","8-demethyl-8-alpha-L-rhamnosyl-tetracenomycin C + S-adenosyl-L-methionine = 8-demethyl-8-(2-O-methyl-alpha-L-rhamnosyl)-tetracenomycin C + S-adenosyl-L-homocysteine + 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1,4-alpha-maltohydrolase"]],"b":[["4_yaco_media.yaml","4_yaco_media"],["Chopped_Meat_Carbohydrate_Medium.yaml","chopped_meat_carbohydrate_medium"],["Chopped_Meat_Carbohydrate_Medium_w_Tween_80.yaml","chopped_meat_carbohydrate_medium_w_tween_80"],["Chopped_meat_carbohydrates_with_rumen_fluid.yaml","chopped_meat_carbohydrates_with_rumen_fluid"],["KTM_medium.yaml","ktm_medium"],["LACTOBACILLUS_PONTIS_MEDIUM.yaml","lactobacillus_pontis_medium"]]},{"id":"CHEBI:16857","l":"L-threonine","na":9,"nb":35,"a":[["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.23","The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A2.A.42","The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"]],"b":[["CDM_LP.yaml","cdm_lp"],["CTM_MEDIUM.yaml","ctm_medium"],["Hans_Basal_Media_plus_0.2x_20AA_mix.yaml","Hans Basal Media plus 0.2x 20AA mix"],["MOPS_Rich_Defined_media_noCarbon.yaml","MOPS Rich Defined media noCarbon"],["McAA_formate_No_pABA.yaml","McAA formate No pABA"],["Mops_medium.yaml","mops_medium"]]},{"id":"CHEBI:16704","l":"uridine","na":26,"nb":9,"a":[["EC%3A1.14.11.3","pyrimidine-deoxynucleoside 2'-dioxygenase"],["EC%3A2.4.2.2","pyrimidine-nucleoside phosphorylase"],["EC%3A2.4.2.3","uridine phosphorylase"],["EC%3A2.7.1.48","uridine/cytidine kinase"],["EC%3A3.2.2.3","uridine nucleosidase"],["EC%3A3.2.2.8","ribosylpyrimidine nucleosidase"]],"b":[["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"],["SGW_Northen_Exometabolite_mix_5x.yaml","SGW Northen Exometabolite mix 5x"]]},{"id":"CHEBI:18019","l":"L-lysine","na":8,"nb":32,"a":[["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A2.A.53","The Sulfate Permease (SulP) Family"],["MCSA%3A746","L-peptidase"],["MCSA%3A786","peptidyl-Lys metalloendopeptidase"],["MCSA%3A597","ubiquitinyl hydrolase 1 (peptidase C12 type)"]],"b":[["Chamberlain_CDM.yaml","chamberlain_cdm"],["Hans_Basal_Media_plus_0.2x_20AA_mix.yaml","Hans Basal Media plus 0.2x 20AA mix"],["MOPS_Rich_Defined_media_noCarbon.yaml","MOPS Rich Defined media noCarbon"],["McAA_formate_No_pABA.yaml","McAA formate No pABA"],["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"]]},{"id":"CHEBI:17562","l":"cytidine","na":25,"nb":8,"a":[["EC%3A2.7.1.213","cytidine kinase"],["EC%3A2.7.1.48","uridine/cytidine kinase"],["EC%3A3.1.3.91","7-methylguanosine nucleotidase"],["EC%3A3.2.2.8","ribosylpyrimidine nucleosidase"],["EC%3A3.5.1.135","N(4)-acetylcytidine amidohydrolase"],["EC%3A3.5.4.5","cytidine deaminase"]],"b":[["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"],["SGW_Northen_Exometabolite_mix_5x.yaml","SGW Northen Exometabolite mix 5x"]]},{"id":"CHEBI:17748","l":"thymidine","na":21,"nb":8,"a":[["EC%3A2.4.2.2","pyrimidine-nucleoside phosphorylase"],["EC%3A2.4.2.4","thymidine phosphorylase"],["EC%3A2.7.1.114","AMP--thymidine kinase"],["EC%3A2.7.1.118","ADP--thymidine kinase"],["EC%3A2.7.1.145","deoxynucleoside kinase"],["EC%3A2.7.1.21","thymidine kinase"]],"b":[["CHI_1776_MEDIUM.yaml","chi_1776_medium"],["MCD_Medium.yaml","mcd_medium"],["SGW_Northen_Exometabolite_mix_5x.yaml","SGW Northen Exometabolite mix 5x"],["Soil_Defined_Media_%28SDM%29.yaml","Soil Defined Media (SDM)"],["cdm_lab_medium.yaml","cdm_lab_medium"],["cdm_teusink_et_al.yaml","cdm_teusink_et_al"]]},{"id":"CHEBI:16335","l":"adenosine","na":35,"nb":7,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16335","requires vitamin B12"],["EC%3A1.1.3.39","nucleoside oxidase (H2O2-forming)"],["EC%3A2.7.1.114","AMP--thymidine kinase"],["EC%3A2.7.1.20","adenosine kinase"],["EC%3A3.13.2.1","adenosylhomocysteinase"],["EC%3A3.13.2.3","(R)-S-adenosyl-L-methionine hydrolase (adenosine-forming)"]],"b":[["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"],["SGW_Northen_Exometabolite_mix_5x.yaml","SGW Northen Exometabolite mix 5x"]]},{"id":"CHEBI:30742","l":"ethylene glycol","na":7,"nb":21,"a":[["EC%3A3.1.1.102","mono(ethylene terephthalate) hydrolase"],["RHEA%3A42648","(2,5-ethylene furandicarboxylate)(n) + 2 H2O = (2,5-ethylene furandicarboxylate)(n-1) + 2,5-dicarboxyfuran + ethylene glycol + 2 H(+)"],["RHEA%3A49532","4-[(2-hydroxyethoxy)carbonyl]benzoate + H2O = terephthalate + ethylene glycol + H(+)"],["RHEA%3A80759","bis(2-hydroxyethyl) terephthalate + H2O = 4-[(2-hydroxyethoxy)carbonyl]benzoate + ethylene glycol + H(+)"],["RHEA%3A27630","ethylene glycol + NAD(+) = glycolaldehyde + NADH + H(+)"],["MCSA%3A847","epoxide hydrolase"]],"b":[["acetobacterium_medium_marine.yaml","acetobacterium_medium_marine"],["bm_in_arabinose_hodgson_et_al.yaml","bm_in_arabinose_hodgson_et_al"],["bm_in_cellobiose_hodgson_et_al.yaml","bm_in_cellobiose_hodgson_et_al"],["bm_in_fructose_hodgson_et_al.yaml","bm_in_fructose_hodgson_et_al"],["bm_in_galactose_hodgson_et_al.yaml","bm_in_galactose_hodgson_et_al"],["bm_in_glucose_hodgson_et_al.yaml","bm_in_glucose_hodgson_et_al"]]},{"id":"CHEBI:17578","l":"toluene","na":13,"nb":7,"a":[["EC%3A1.14.12.11","toluene dioxygenase"],["EC%3A1.14.13.236","toluene 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phosphorylase"],["EC%3A2.4.1.320","1,4-beta-mannosyl-N-acetylglucosamine phosphorylase"],["EC%3A2.4.1.90","N-acetyllactosamine synthase"]],"b":[["ANAEROBACCA_MEDIUM.yaml","anaerobacca_medium"],["BSK_MEDIUM.yaml","bsk_medium"],["NATRONOARCHAEA_MEDIUM_WITH_GLUCOSAMINE.yaml","natronoarchaea_medium_with_glucosamine"],["barbour_sfoenner_kelly_bsk_ii_medium.yaml","barbour_sfoenner_kelly_bsk_ii_medium"],["m30__354deb2e.yaml","m30"],["modified_bsk_medium__578ddf1c.yaml","modified_bsk_medium"]]},{"id":"CHEBI:24996","l":"lactate","na":23,"nb":6,"a":[["EC%3A1.1.1.436","lactate dehydrogenase (NAD(+),ferredoxin)"],["EC%3A3.5.1.124","protein deglycase"],["RHEA%3A57300","an N(2)-(1-hydroxy-2-oxopropyl)-2'-deoxyguanosine in DNA + H2O = a 2'-deoxyguanosine in DNA + lactate + H(+)"],["RHEA%3A57288","an N(2)-(1-hydroxy-2-oxopropyl)-guanosine in RNA + H2O = a guanosine in RNA + lactate + H(+)"],["RHEA%3A46964","lactate + 2 reduced [2Fe-2S]-[ferredoxin] + 2 NAD(+) = 2 oxidized [2Fe-2S]-[ferredoxin] + pyruvate + 2 NADH"],["RHEA%3A57244","N(2)-(1-hydroxy-2-oxopropyl)-dGTP + H2O = lactate + dGTP + H(+)"]],"b":[["ARCOBACTER_ANAEROPHILUS_MEDIUM.yaml","arcobacter_anaerophilus_medium"],["defined_freshwater_medium_cocl2__f0ffbcc6.yaml","defined_freshwater_medium_cocl2"],["defined_freshwater_medium_coso4__41b1d433.yaml","defined_freshwater_medium_coso4"],["fermentation_medium_lactate_nh4cl.yaml","fermentation_medium_lactate_nh4cl"],["modified_m1_medium_with_20_mm_lactate_pinchuk_et_al.yaml","modified_m1_medium_with_20_mm_lactate_pinchuk_et_al"],["modified_m1_medium_with_lactate_and_glycine_no_nh4cl.yaml","modified_m1_medium_with_lactate_and_glycine_no_nh4cl"]]},{"id":"CHEBI:22653","l":"asparagine","na":6,"nb":21,"a":[["TCDB%3A2.A.25","The Alanine or Glycine:Cation Symporter (AGCS) Family"],["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.13","The C4-Dicarboxylate Uptake (Dcu) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"]],"b":[["CDM_LP.yaml","cdm_lp"],["HALOACTINOMYCES_HALOPHILUS_MEDIUM.yaml","haloactinomyces_halophilus_medium"],["MCD_Medium.yaml","mcd_medium"],["MS10R_Medium.yaml","ms10r_medium"],["MS10_Medium.yaml","ms10_medium"],["MYKORRHIZA_MEDIUM.yaml","mykorrhiza_medium"]]},{"id":"CHEBI:28645","l":"beta-D-fructofuranose","na":6,"nb":20,"a":[["EC%3A2.7.1.3","ketohexokinase"],["EC%3A3.2.1.48","sucrose alpha-glucosidase"],["RHEA%3A18145","beta-D-fructose + ATP = beta-D-fructose 1-phosphate + ADP + H(+)"],["RHEA%3A33791","sucrose 6(F)-phosphate + H2O = beta-D-fructose + beta-D-glucose 6-phosphate"],["RHEA%3A33795","sucrose + H2O = beta-D-fructose + alpha-D-glucose"],["proteintraitsmech%3ABIOLIP_FRU","FRU-binding 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H(+)"]],"b":[["ACETIVIBRIO_CELLULOLYTICUS_MEDIUM.yaml","acetivibrio_cellulolyticus_medium"],["CLOSTRIDIUM_CELLULOVORANS_MEDIUM.yaml","clostridium_cellulovorans_medium"],["Clostridium_Cellulolytic_medium.yaml","clostridium_cellulolytic_medium"],["HALOCELLA_CELLULOLYTICA_MEDIUM.yaml","halocella_cellulolytica_medium"],["RUMINICLOSTRIDIUM_CELLOBIOPARUM_MEDIUM.yaml","ruminiclostridium_cellobioparum_medium"],["RUMINICLOSTRIDIUM_PAPYROSOLVENS_MEDIUM.yaml","ruminiclostridium_papyrosolvens_medium"]]},{"id":"CHEBI:17439","l":"cyanocob(III)alamin","na":5,"nb":187,"a":[["EC%3A1.16.1.6","cyanocobalamin reductase"],["RHEA%3A16113","2 cob(II)alamin-[cyanocobalamin reductase] + 2 hydrogen cyanide + NADP(+) = 2 cyanocob(III)alamin + 2 apo-[cyanocobalamin reductase] + NADPH + H(+)"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A1.B.14","The Outer Membrane Receptor (OMR) Family"],["TCDB%3A9.B.87","The Selenoprotein P Receptor (SelP-Receptor) Family"]],"b":[["2ASW.yaml","2asw"],["2asw__59e92e67.yaml","2asw"],["2x_UGA_defined_nocarbon.yaml","2x UGA defined nocarbon"],["3n_bbm_v_recipe_for_customer_orders.yaml","3n_bbm_v_recipe_for_customer_orders"],["ACY.yaml","ACY"],["ALP_defined.yaml","ALP defined"]]},{"id":"CHEBI:16750","l":"guanosine","na":19,"nb":5,"a":[["EC%3A2.4.2.1","purine-nucleoside phosphorylase"],["EC%3A2.4.2.15","guanosine phosphorylase"],["EC%3A2.7.1.73","inosine kinase"],["EC%3A3.5.4.15","guanosine deaminase"],["RHEA%3A27862","3'-GMP + H2O = guanosine + phosphate"],["RHEA%3A27714","GMP + H2O = guanosine + phosphate"]],"b":[["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"]]},{"id":"CHEBI:18107","l":"xanthosine","na":9,"nb":5,"a":[["EC%3A2.1.1.158","7-methylxanthosine synthase"],["EC%3A2.4.2.1","purine-nucleoside phosphorylase"],["EC%3A3.5.4.15","guanosine deaminase"],["RHEA%3A12861","guanosine + H2O + H(+) = xanthosine + NH4(+)"],["RHEA%3A27994","xanthosine + H2O = D-ribose + xanthine"],["RHEA%3A28939","xanthosine(in) + H(+)(in) = xanthosine(out) + H(+)(out)"]],"b":[["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"]]},{"id":"CHEBI:16634","l":"raffinose","na":8,"nb":5,"a":[["EC%3A2.4.1.166","raffinose--raffinose alpha-galactosyltransferase"],["EC%3A2.4.1.67","galactinol--raffinose galactosyltransferase"],["EC%3A2.4.1.82","galactinol--sucrose galactosyltransferase"],["RHEA%3A14125","2 raffinose = 1(F)-alpha-D-galactosylraffinose + sucrose"],["RHEA%3A20776","alpha-D-galactosyl-(1->3)-1D-myo-inositol + raffinose = stachyose + myo-inositol"],["RHEA%3A20161","alpha-D-galactosyl-(1->3)-1D-myo-inositol + sucrose = raffinose + myo-inositol"]],"b":[["MYXOCOCCUS_FLAVESCENS_MEDIUM.yaml","myxococcus_flavescens_medium"],["Modified_SP_Medium.yaml","modified_sp_medium"],["SP_Medium.yaml","sp_medium"],["myxococcus_flavescens_medium__aa6b37a2.yaml","myxococcus_flavescens_medium"],["sp_medium__3b598fd8.yaml","sp_medium"]]},{"id":"CHEBI:16865","l":"gamma-aminobutyric acid","na":5,"nb":6,"a":[["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A2.A.42","The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family"],["TCDB%3A2.A.22","The Neurotransmitter:Sodium Symporter (NSS) Family"],["proteintraitsmech%3ABIOLIP_ABU","ABU-binding site"]],"b":[["CLOSTRIDIUM_AMINOBUTYRICUM_MEDIUM.yaml","clostridium_aminobutyricum_medium"],["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"]]},{"id":"CHEBI:28911","l":"cob(III)alamin","na":6,"nb":5,"a":[["RHEA%3A81907","(2R,3R,5R)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + methylcob(III)alamin + S-adenosyl-L-methionine = (2R,3R,5S,6R)-6-(methyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A81911","(2R,3R,5S,6R)-6-(methyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + methylcob(III)alamin + S-adenosyl-L-methionine = (2R,3R,5S,6R)-6-(ethyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A76471","cob(III)alamin + AH2 = cob(I)alamin + A + 2 H(+)"],["RHEA%3A81883","cytidine 5'-{[hydroxy(2-hydroxyethyl)phosphonoyl]phosphate} + methylcob(III)alamin + S-adenosyl-L-methionine = cytidine 5'-({hydroxy[(S)-2-hydroxypropyl]phosphonoyl}phosphate) + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A77223","gentamicin X2 + methylcob(III)alamin + S-adenosyl-L-methionine = geneticin + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A81891","N-acetyl-demethyl-L-phosphinothricin + methylcob(III)alamin + S-adenosyl-L-methionine = N-acetyl-L-phosphinothricin + cob(III)alamin + 5'-deoxyadenosine + L-methionine"]],"b":[["MEDIUM_for_SM250.yaml","medium_for_sm250"],["Medium_YCFAGSC.yaml","medium_ycfagsc"],["Medium_for_Freshwater_Flexibacteria.yaml","medium_for_freshwater_flexibacteria"],["Standard_PETC_medium.yaml","standard_petc_medium"],["YCFAG_medium.yaml","ycfag_medium"]]},{"id":"CHEBI:17191","l":"L-isoleucine","na":4,"nb":65,"a":[["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) 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(decarboxylating)"]],"b":[["DIETHYL_PHOSPHONATE_MEDIUM.yaml","diethyl_phosphonate_medium"],["defined_freshwater_medium_cocl2__140b53e4.yaml","defined_freshwater_medium_cocl2"],["defined_freshwater_medium_coso4__7cf7eff3.yaml","defined_freshwater_medium_coso4"],["nutrient_medium_p_hydroxybenzoate.yaml","nutrient_medium_p_hydroxybenzoate"]]},{"id":"CHEBI:16870","l":"choline alfoscerate","na":48,"nb":4,"a":[["EC%3A3.1.1.5","lysophospholipase"],["EC%3A3.1.4.2","glycerophosphocholine phosphodiesterase"],["EC%3A3.1.4.38","glycerophosphocholine cholinephosphodiesterase"],["EC%3A3.3.2.2","lysoplasmalogenase"],["RHEA%3A40835","1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine + 2 H2O = sn-glycerol 3-phosphocholine + 2 (9Z)-octadecenoate + 2 H(+)"],["RHEA%3A40975","1,2-dihexadecanoyl-sn-glycero-3-phosphocholine + 2 H2O = sn-glycerol 3-phosphocholine + 2 hexadecanoate + 2 H(+)"]],"b":[["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"]]},{"id":"CHEBI:18050","l":"L-glutamine","na":4,"nb":42,"a":[["MCSA%3A596","deuterolysin"],["MCSA%3A477","picornain 3C"],["MCSA%3A763","picornain 3C"],["proteintraitsmech%3ABIOLIP_GLN","GLN-binding site"]],"b":[["CDM_LP.yaml","cdm_lp"],["CTM_MEDIUM.yaml","ctm_medium"],["FRANCISELLA_PERSICA_MEDIUM.yaml","francisella_persica_medium"],["GLUTAMINE_MEDIUM.yaml","glutamine_medium"],["Hans_Basal_Media_plus_0.2x_20AA_mix.yaml","Hans Basal Media plus 0.2x 20AA mix"],["MEDIUM_FOR_TREPONEMA_PARVUM.yaml","medium_for_treponema_parvum"]]},{"id":"CHEBI:17115","l":"L-serine","na":4,"nb":41,"a":[["MCSA%3A609","alpha-lytic endopeptidase"],["MCSA%3A238","assemblin"],["MCSA%3A688","classical-complement-pathway C3/C5 convertase"],["proteintraitsmech%3ABIOLIP_SER","SER-binding site"]],"b":[["AMINOMONAS_MEDIUM.yaml","aminomonas_medium"],["CDM_LP.yaml","cdm_lp"],["CMM.yaml","cmm"],["Hans_Basal_Media_plus_0.2x_20AA_mix.yaml","Hans Basal Media plus 0.2x 20AA mix"],["MEDIUM_FOR_TREPONEMA_PARVUM.yaml","medium_for_treponema_parvum"],["MOPS_Rich_Defined_media_noCarbon.yaml","MOPS Rich Defined media noCarbon"]]},{"id":"CHEBI:17925","l":"alpha-D-glucose","na":35,"nb":4,"a":[["EC%3A2.4.1.231","alpha,alpha-trehalose phosphorylase (configuration-retaining)"],["EC%3A3.1.3.58","sugar-terminal-phosphatase"],["EC%3A3.1.3.9","glucose-6-phosphatase"],["EC%3A3.2.1.10","oligo-1,6-glucosidase"],["EC%3A3.2.1.219","palatinase"],["EC%3A3.2.1.28","alpha,alpha-trehalase"]],"b":[["CDMM.yaml","cdmm"],["MDM.yaml","mdm"],["MM3.yaml","mm3"],["tsb_glucose_medium.yaml","tsb_glucose_medium"]]},{"id":"CHEBI:28869","l":"menadione","na":4,"nb":34,"a":[["RHEA%3A35611","menadiol + 2 O2 = menadione + 2 superoxide + 2 H(+)"],["RHEA%3A69695","menadione + NADH + H(+) = menadiol + NAD(+)"],["RHEA%3A63492","menadione + NADPH + H(+) = menadiol + NADP(+)"],["proteintraitsmech%3ABIOLIP_VK3","VK3-binding site"]],"b":[["ABB.yaml","ABB"],["ACY.yaml","ACY"],["BGDM.yaml","bgdm"],["BHIS.yaml","bhis"],["BHIS_K3.yaml","BHIS_K3"],["BHIS_K3_noGlucose.yaml","BHIS_K3_noGlucose"]]},{"id":"CHEBI:15882","l":"phenol","na":31,"nb":4,"a":[["EC%3A1.14.13.244","phenol 2-monooxygenase (NADH)"],["EC%3A1.14.13.7","phenol 2-monooxygenase (NADPH)"],["EC%3A1.14.14.20","phenol 2-monooxygenase (FADH2)"],["EC%3A2.1.1.25","phenol O-methyltransferase"],["EC%3A2.4.2.55","nicotinate D-ribonucleotide:phenol phospho-D-ribosyltransferase"],["EC%3A2.7.1.238","phenol phosphorylase"]],"b":[["MEDIUM_FOR_BACILLUS_STEAROTHERMOPHILUS.yaml","medium_for_bacillus_stearothermophilus"],["anaerobic_bicarbonate_buffered_medium_with_phenol.yaml","anaerobic_bicarbonate_buffered_medium_with_phenol"],["defined_freshwater_medium_cocl2__ac506908.yaml","defined_freshwater_medium_cocl2"],["defined_freshwater_medium_coso4__0930ab53.yaml","defined_freshwater_medium_coso4"]]},{"id":"CHEBI:28262","l":"dimethyl sulfoxide","na":14,"nb":4,"a":[["EC%3A1.14.13.245","assimilatory dimethylsulfide S-monooxygenase"],["EC%3A1.8.1.17","dimethylsulfone reductase"],["EC%3A1.8.2.4","dimethyl sulfide:cytochrome c2 reductase"],["EC%3A1.8.5.3","respiratory dimethylsulfoxide reductase"],["RHEA%3A30587","2-demethylmenaquinol-8 + dimethyl sulfoxide = 2-demethylmenaquinone-8 + dimethyl sulfide + H2O"],["RHEA%3A30227","2 Fe(III)-[cytochrome c2] + dimethyl sulfide + H2O = 2 Fe(II)-[cytochrome c2] + dimethyl sulfoxide + 2 H(+)"]],"b":[["MINERAL_MEDIUM_WITH_DIBENZOFURAN.yaml","mineral_medium_with_dibenzofuran"],["SYNBIOBACTERIUM_KA13_MEDIUM.yaml","synbiobacterium_ka13_medium"],["mineral_medium_with_2_chlorobenzoate.yaml","mineral_medium_with_2_chlorobenzoate"],["synbiobacterium_ka13_medium__e7f47e80.yaml","synbiobacterium_ka13_medium"]]},{"id":"CHEBI:16856","l":"glutathione","na":4,"nb":11,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16856","requires glutathione"],["MCSA%3A359","lactoglutathione lyase"],["MCSA%3A32","lactoylglutathione lyase"],["proteintraitsmech%3ABIOLIP_GSH","GSH-binding 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Superfamily"]],"b":[["CTM_MEDIUM.yaml","ctm_medium"],["MODIFIED_NOS_MEDIUM.yaml","modified_nos_medium"],["TREPONEMA_ISOPTEROCOLA_MEDIUM.yaml","treponema_isopterocola_medium"],["glucose_sulfide_medium__486fbf43.yaml","glucose_sulfide_medium"]]},{"id":"CHEBI:17015","l":"riboflavin","na":3,"nb":1290,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_17015","requires riboflavin"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["proteintraitsmech%3ABIOLIP_RBF","RBF-binding site"]],"b":[["0_3_x_hyphomicrobium_medium.yaml","0_3_x_hyphomicrobium_medium"],["0_3_x_hyphomicrobium_medium__ea4b6083.yaml","0_3_x_hyphomicrobium_medium"],["1650_medium_for_strain_j5b.yaml","1650_medium_for_strain_j5b"],["1_10_PYGV_MEDIUM_modified.yaml","1_10_pygv_medium_modified"],["1_2_SME_MEDIUM_FOR_YA.yaml","1_2_sme_medium_for_ya"],["2x_UGA_defined_nocarbon.yaml","2x UGA defined nocarbon"]]},{"id":"CHEBI:27470","l":"folic acid","na":3,"nb":1262,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_27470","requires 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noCarbon"]]},{"id":"CHEBI:17295","l":"L-phenylalanine","na":3,"nb":63,"a":[["MCSA%3A595","scytalidopepsin B"],["MCSA%3A598","streptopain"],["proteintraitsmech%3ABIOLIP_PHE","PHE-binding site"]],"b":[["BGDM.yaml","bgdm"],["CDM_LP.yaml","cdm_lp"],["CMM.yaml","cmm"],["CTM_MEDIUM.yaml","ctm_medium"],["Hans_Basal_Media_plus_0.2x_20AA_mix.yaml","Hans Basal Media plus 0.2x 20AA mix"],["M9_minimal_media_aromix_noCarbon.yaml","M9 minimal media aromix noCarbon"]]},{"id":"CHEBI:16467","l":"L-arginine","na":3,"nb":51,"a":[["MCSA%3A688","classical-complement-pathway C3/C5 convertase"],["MCSA%3A425","plasmin"],["MCSA%3A798","t-plasminogen activator"]],"b":[["ABB.yaml","ABB"],["ACY.yaml","ACY"],["CAENICOLA_MOBILE_MEDIUM.yaml","caenicola_mobile_medium"],["CMM.yaml","cmm"],["CTM_MEDIUM.yaml","ctm_medium"],["Chamberlain_CDM.yaml","chamberlain_cdm"]]},{"id":"CHEBI:17203","l":"L-proline","na":3,"nb":48,"a":[["MCSA%3A403","astacin"],["MCSA%3A379","Xaa-Pro aminopeptidase"],["proteintraitsmech%3ABIOLIP_PRO","PRO-binding site"]],"b":[["CDM_LP.yaml","cdm_lp"],["Chamberlain_CDM.yaml","chamberlain_cdm"],["FRANCISELLA_PERSICA_MEDIUM.yaml","francisella_persica_medium"],["Hans_Basal_Media_plus_0.2x_20AA_mix.yaml","Hans Basal Media plus 0.2x 20AA mix"],["MDM.yaml","mdm"],["MEIOTHERMUS_MEDIUM_R8.yaml","meiothermus_medium_r8"]]},{"id":"CHEBI:18135","l":"catechol","na":47,"nb":3,"a":[["EC%3A1.1.3.14","catechol oxidase (dimerizing)"],["EC%3A1.10.3.1","catechol oxidase"],["EC%3A1.13.11.1","catechol 1,2-dioxygenase"],["EC%3A1.13.11.2","catechol 2,3-dioxygenase"],["EC%3A1.14.12.1","anthranilate 1,2-dioxygenase (deaminating, decarboxylating)"],["EC%3A1.14.12.13","2-halobenzoate 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rifampicin"]],"b":[["lb_luria_bertani_agar_with_kanamycin_and_rifampicin__0472ff8f.yaml","lb_luria_bertani_agar_with_kanamycin_and_rifampicin"],["luria_bertani_lb_antibiotics.yaml","luria_bertani_lb_antibiotics"]]},{"id":"CHEBI:36218","l":"beta-lactose","na":2,"nb":9,"a":[["RHEA%3A28659","beta-lactose + H2O = beta-D-galactose + beta-D-glucose"],["RHEA%3A59352","beta-lactose + O2 = lactobiono-1,5-lactone + H2O2"]],"b":[["ALKALINE_LACTOSE_AGAR.yaml","alkaline_lactose_agar"],["LACTOBACILLUS_MEDIUM_I.yaml","lactobacillus_medium_i"],["M17_medium_supplemented_with_20_g_L_of_lactose.yaml","m17_medium_supplemented_with_20_g_l_of_lactose"],["ZMB_Gut.yaml","ZMB Gut"],["gam_broth_with_1_lactose.yaml","gam_broth_with_1_lactose"],["m17_broth_containing_lactose.yaml","m17_broth_containing_lactose"]]},{"id":"CHEBI:18403","l":"L-arabinitol","na":8,"nb":2,"a":[["EC%3A1.1.1.12","L-arabinitol 4-dehydrogenase"],["EC%3A1.1.1.13","L-arabinitol 2-dehydrogenase"],["EC%3A1.1.1.21","aldose reductase"],["RHEA%3A25225","L-arabinitol + NAD(+) = L-arabinose + NADH + H(+)"],["RHEA%3A21356","L-arabinitol + NAD(+) = L-ribulose + NADH + H(+)"],["RHEA%3A16381","L-arabinitol + NAD(+) = L-xylulose + NADH + H(+)"]],"b":[["SGW_Northen_Exometabolite_mix_5x.yaml","SGW Northen Exometabolite mix 5x"],["Soil_Defined_Media_%28SDM%29.yaml","Soil Defined Media (SDM)"]]},{"id":"CHEBI:17824","l":"propan-2-ol","na":7,"nb":2,"a":[["EC%3A1.1.1.80","isopropanol dehydrogenase (NADP(+))"],["EC%3A1.14.13.227","propane 2-monooxygenase"],["RHEA%3A62196","propan-2-ol + 2 Fe(III)-[cytochrome c] = acetone + 2 Fe(II)-[cytochrome c] + 2 H(+)"],["RHEA%3A41984","propan-2-ol + NAD(+) = acetone + NADH + H(+)"],["RHEA%3A21792","propan-2-ol + NADP(+) = acetone + NADPH + H(+)"],["RHEA%3A49992","propane + NADH + O2 + H(+) = propan-2-ol + NAD(+) + H2O"]],"b":[["METHANOGENIUM_CV_MEDIUM.yaml","methanogenium_cv_medium"],["METHANOSPIRILLUM_SK_MEDIUM.yaml","methanospirillum_sk_medium"]]},{"id":"CHEBI:45296","l":"hexadecane","na":2,"nb":7,"a":[["RHEA%3A77375","heptadecanoate + hnu + H(+) = hexadecane + CO2"],["RHEA%3A76747","hexadecane + reduced [NADPH--hemoprotein reductase] + O2 = 9-hexadecanol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"]],"b":[["FUNDIBACTER_JADENSIS_MEDIUM.yaml","fundibacter_jadensis_medium"],["MODIFIED_SEA_WATER_AGAR.yaml","modified_sea_water_agar"],["dehalobacter_restrictus_medium_tce.yaml","dehalobacter_restrictus_medium_tce"],["dehalobacter_restrictus_medium_tce__3ce89046.yaml","dehalobacter_restrictus_medium_tce"],["desulfuromonas_medium_tce.yaml","desulfuromonas_medium_tce"],["m9_with_1_0_glucose_and_40_emulsion.yaml","m9_with_1_0_glucose_and_40_emulsion"]]},{"id":"CHEBI:16196","l":"oleic acid","na":2,"nb":6,"a":[["TCDB%3A9.A.76","The Omega3 Fatty Acid Desaturase 3/Putative Transporter (FAD3) 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L-lysyl-[protein]"]],"b":[["SERPENTINICELLA_MEDIUM.yaml","serpentinicella_medium"],["for_dsm_17722.yaml","for_dsm_17722"]]},{"id":"CHEBI:15346","l":"coenzyme A","na":2,"nb":4,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_15346","requires coenzyme A"],["proteintraitsmech%3ABIOLIP_COA","COA-binding site"]],"b":[["HELMUTKOENIGIA_MEDIUM.yaml","helmutkoenigia_medium"],["TREPONEMA_ISOPTEROCOLA_MEDIUM.yaml","treponema_isopterocola_medium"],["omiz_pat_medium_modified.yaml","omiz_pat_medium_modified"],["treponema_isopterocola_medium__e7b07692.yaml","treponema_isopterocola_medium"]]},{"id":"CHEBI:18405","l":"","na":2,"nb":4,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_18405","requires pyridoxal 5'-phosphate"],["proteintraitsmech%3ABIOLIP_PLP","PLP-binding 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H2O"]],"b":[["MEDIUM_FOR_CHELATOCOCCUS_BUHARII.yaml","medium_for_chelatococcus_buharii"],["NITRILOTRIACETATE_MEDIUM.yaml","nitrilotriacetate_medium"],["methanoregula_peat_medium__84e41704.yaml","methanoregula_peat_medium"],["methanosphaerula_peat_medium__1238714d.yaml","methanosphaerula_peat_medium"]]},{"id":"CHEBI:75456","l":"2-stearoylglycerol","na":2,"nb":4,"a":[["RHEA%3A38519","1-(9Z-octadecenoyl)-2-octadecanoyl-sn-glycerol + H2O = 2-octadecanoylglycerol + (9Z)-octadecenoate + H(+)"],["proteintraitsmech%3ABIOLIP_2JT","2JT-binding site"]],"b":[["LEEMING_AND_NOTMAN_AGAR.yaml","leeming_and_notman_agar"],["leeming_amp_notman_agar_lna_leeming_amp_notman_1987_in_the_yeasts_a_taxonomic_study_5th_edn.yaml","leeming_amp_notman_agar_lna_leeming_amp_notman_1987_in_the_yeasts_a_taxonomic_study_5th_edn"],["leeming_amp_notman_agar_modified_mlna.yaml","leeming_amp_notman_agar_modified_mlna"],["leeming_and_notman_agar__33424fef.yaml","leeming_and_notman_agar"]]},{"id":"NCBITaxon:556484","l":"","na":4,"nb":2,"a":[["TED%3AAF-B7GAJ8-F1-model_v4_TED01","TED highly-symmetric fold AF-B7GAJ8-F1-model_v4_TED01"],["TED%3AAF-B7G520-F1-model_v4_TED02","TED novel fold AF-B7G520-F1-model_v4_TED02"],["TED%3AAF-B7G8V4-F1-model_v4_TED02","TED novel fold AF-B7G8V4-F1-model_v4_TED02"],["TED%3AAF-B7GB31-F1-model_v4_TED01","TED novel fold AF-B7GB31-F1-model_v4_TED01"]],"b":[["2ASW.yaml","2asw"],["F_2_Medium.yaml","f_2_medium"]]},{"id":"CHEBI:136511","l":"manganese dioxide","na":3,"nb":2,"a":[["EC%3A1.16.3.3","manganese 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deaminase"]],"b":[["MCD_Medium.yaml","mcd_medium"],["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"]]},{"id":"CHEBI:29032","l":"(R)-pantothenate","na":15,"nb":135,"a":[["EC%3A2.7.1.33","pantothenate kinase"],["EC%3A3.5.1.22","pantothenase"],["EC%3A3.5.1.92","pantetheine hydrolase"],["EC%3A6.3.2.1","pantoate--beta-alanine ligase (AMP-forming)"],["EC%3A6.3.2.44","pantoate--beta-alanine ligase (ADP-forming)"],["RHEA%3A68332","(R)-4'-phosphopantothenate + H2O = (R)-pantothenate + phosphate"]],"b":[["AP11MH_medium.yaml","ap11mh_medium"],["ARCHAEOGLOBUS_FULGIDUS_MEDIUM.yaml","archaeoglobus_fulgidus_medium"],["AS_medium.yaml","as_medium"],["A_medium.yaml","a_medium"],["Artificial_seawater_medium_for_strain_JS_SRB250Lac.yaml","artificial_seawater_medium_for_strain_js_srb250lac"],["Cedears_Standard_Medium_2.yaml","cedears_standard_medium_2"]]},{"id":"CHEBI:17750","l":"glycine betaine","na":33,"nb":15,"a":[["EC%3A1.1.3.17","choline oxidase"],["EC%3A1.13.11.90","[1-hydroxy-2-(trimethylamino)ethyl]phosphonate dioxygenase (glycine- betaine-forming)"],["EC%3A1.14.13.251","glycine betaine monooxygenase"],["EC%3A1.2.1.8","betaine-aldehyde dehydrogenase"],["EC%3A1.21.4.4","betaine reductase"],["EC%3A2.1.1.157","sarcosine/dimethylglycine N-methyltransferase"]],"b":[["CUNICULIPLASMA_MEDIUM.yaml","cuniculiplasma_medium"],["MALEDIVIBACTER_MEDIUM.yaml","maledivibacter_medium"],["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"]]},{"id":"CHEBI:15428","l":"glycine","na":13,"nb":87,"a":[["MCSA%3A718","caspase-1"],["MCSA%3A599","dipeptidase E"],["MCSA%3A906","gelatinase A"],["MCSA%3A762","glycine C-acetyltransferase"],["MCSA%3A746","L-peptidase"],["MCSA%3A477","picornain 3C"]],"b":[["ACETOBACTEROIDES_GLYCINOPHILUS_MEDIUM.yaml","acetobacteroides_glycinophilus_medium"],["ACIDAMINOBACTER_MEDIUM.yaml","acidaminobacter_medium"],["ACIDAMINOCOCCUS_FERMENTANS_MEDIUM.yaml","acidaminococcus_fermentans_medium"],["ANT.yaml","ant"],["CDM_LP.yaml","cdm_lp"],["CMM.yaml","cmm"]]},{"id":"CHEBI:16040","l":"cytosine","na":17,"nb":13,"a":[["EC%3A2.4.2.57","AMP 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H2O"]],"b":[["BTU_MEDIUM.yaml","btu_medium"],["Brucella_agar_plates_supplemented_with_hemin_and_vitamin_K1.yaml","brucella_agar_plates_supplemented_with_hemin_and_vitamin_k1"],["COLON_EXTRACT_MEDIUM.yaml","colon_extract_medium"],["Chopped_meat_carbohydrates_with_rumen_fluid.yaml","chopped_meat_carbohydrates_with_rumen_fluid"],["DIALISTER_MEDIUM.yaml","dialister_medium"],["EUBACTERIUM_LENTUM_MEDIUM.yaml","eubacterium_lentum_medium"]]},{"id":"CHEBI:17368","l":"hypoxanthine","na":28,"nb":11,"a":[["EC%3A1.17.1.4","xanthine dehydrogenase"],["EC%3A1.17.3.2","xanthine oxidase"],["EC%3A2.4.2.44","S-methyl-5'-thioinosine phosphorylase"],["EC%3A2.4.2.8","hypoxanthine phosphoribosyltransferase"],["EC%3A3.2.2.12","inosinate nucleosidase"],["EC%3A3.2.2.2","inosine 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1,4-alpha-maltohydrolase"]],"b":[["4_yaco_media.yaml","4_yaco_media"],["Chopped_Meat_Carbohydrate_Medium.yaml","chopped_meat_carbohydrate_medium"],["Chopped_Meat_Carbohydrate_Medium_w_Tween_80.yaml","chopped_meat_carbohydrate_medium_w_tween_80"],["Chopped_meat_carbohydrates_with_rumen_fluid.yaml","chopped_meat_carbohydrates_with_rumen_fluid"],["KTM_medium.yaml","ktm_medium"],["LACTOBACILLUS_PONTIS_MEDIUM.yaml","lactobacillus_pontis_medium"]]},{"id":"CHEBI:16857","l":"L-threonine","na":9,"nb":35,"a":[["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.23","The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A2.A.42","The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily 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5x"]]},{"id":"CHEBI:18019","l":"L-lysine","na":8,"nb":32,"a":[["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A2.A.53","The Sulfate Permease (SulP) Family"],["MCSA%3A746","L-peptidase"],["MCSA%3A786","peptidyl-Lys metalloendopeptidase"],["MCSA%3A597","ubiquitinyl hydrolase 1 (peptidase C12 type)"]],"b":[["Chamberlain_CDM.yaml","chamberlain_cdm"],["Hans_Basal_Media_plus_0.2x_20AA_mix.yaml","Hans Basal Media plus 0.2x 20AA mix"],["MOPS_Rich_Defined_media_noCarbon.yaml","MOPS Rich Defined media noCarbon"],["McAA_formate_No_pABA.yaml","McAA formate No pABA"],["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"]]},{"id":"CHEBI:17562","l":"cytidine","na":25,"nb":8,"a":[["EC%3A2.7.1.213","cytidine kinase"],["EC%3A2.7.1.48","uridine/cytidine kinase"],["EC%3A3.1.3.91","7-methylguanosine nucleotidase"],["EC%3A3.2.2.8","ribosylpyrimidine nucleosidase"],["EC%3A3.5.1.135","N(4)-acetylcytidine amidohydrolase"],["EC%3A3.5.4.5","cytidine deaminase"]],"b":[["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"],["SGW_Northen_Exometabolite_mix_5x.yaml","SGW Northen Exometabolite mix 5x"]]},{"id":"CHEBI:17748","l":"thymidine","na":21,"nb":8,"a":[["EC%3A2.4.2.2","pyrimidine-nucleoside phosphorylase"],["EC%3A2.4.2.4","thymidine phosphorylase"],["EC%3A2.7.1.114","AMP--thymidine kinase"],["EC%3A2.7.1.118","ADP--thymidine kinase"],["EC%3A2.7.1.145","deoxynucleoside kinase"],["EC%3A2.7.1.21","thymidine kinase"]],"b":[["CHI_1776_MEDIUM.yaml","chi_1776_medium"],["MCD_Medium.yaml","mcd_medium"],["SGW_Northen_Exometabolite_mix_5x.yaml","SGW Northen Exometabolite mix 5x"],["Soil_Defined_Media_%28SDM%29.yaml","Soil Defined Media (SDM)"],["cdm_lab_medium.yaml","cdm_lab_medium"],["cdm_teusink_et_al.yaml","cdm_teusink_et_al"]]},{"id":"CHEBI:16335","l":"adenosine","na":35,"nb":7,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16335","requires vitamin B12"],["EC%3A1.1.3.39","nucleoside oxidase (H2O2-forming)"],["EC%3A2.7.1.114","AMP--thymidine kinase"],["EC%3A2.7.1.20","adenosine kinase"],["EC%3A3.13.2.1","adenosylhomocysteinase"],["EC%3A3.13.2.3","(R)-S-adenosyl-L-methionine hydrolase (adenosine-forming)"]],"b":[["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"],["SGW_Northen_Exometabolite_mix_5x.yaml","SGW Northen Exometabolite mix 5x"]]},{"id":"CHEBI:30742","l":"ethylene glycol","na":7,"nb":21,"a":[["EC%3A3.1.1.102","mono(ethylene terephthalate) hydrolase"],["RHEA%3A42648","(2,5-ethylene furandicarboxylate)(n) + 2 H2O = (2,5-ethylene furandicarboxylate)(n-1) + 2,5-dicarboxyfuran + ethylene glycol + 2 H(+)"],["RHEA%3A49532","4-[(2-hydroxyethoxy)carbonyl]benzoate + H2O = terephthalate + ethylene glycol + H(+)"],["RHEA%3A80759","bis(2-hydroxyethyl) terephthalate + H2O = 4-[(2-hydroxyethoxy)carbonyl]benzoate + ethylene glycol + H(+)"],["RHEA%3A27630","ethylene glycol + NAD(+) = glycolaldehyde + NADH + H(+)"],["MCSA%3A847","epoxide hydrolase"]],"b":[["acetobacterium_medium_marine.yaml","acetobacterium_medium_marine"],["bm_in_arabinose_hodgson_et_al.yaml","bm_in_arabinose_hodgson_et_al"],["bm_in_cellobiose_hodgson_et_al.yaml","bm_in_cellobiose_hodgson_et_al"],["bm_in_fructose_hodgson_et_al.yaml","bm_in_fructose_hodgson_et_al"],["bm_in_galactose_hodgson_et_al.yaml","bm_in_galactose_hodgson_et_al"],["bm_in_glucose_hodgson_et_al.yaml","bm_in_glucose_hodgson_et_al"]]},{"id":"CHEBI:17578","l":"toluene","na":13,"nb":7,"a":[["EC%3A1.14.12.11","toluene dioxygenase"],["EC%3A1.14.13.236","toluene 4-monooxygenase"],["EC%3A1.14.13.243","toluene 2-monooxygenase"],["EC%3A1.14.15.26","toluene methyl-monooxygenase"],["EC%3A4.1.1.119","phenylacetate decarboxylase"],["EC%3A4.1.99.11","benzylsuccinate synthase"]],"b":[["FRESHWATER_MEDIUM_WITH_TOLUENE.yaml","freshwater_medium_with_toluene"],["GEORGFUCHSIA_MEDIUM.yaml","georgfuchsia_medium"],["Modified_m9_with_toluene.yaml","modified_m9_with_toluene"],["defined_freshwater_medium_cocl2__6b305113.yaml","defined_freshwater_medium_cocl2"],["defined_freshwater_medium_coso4__35d08dce.yaml","defined_freshwater_medium_coso4"],["freshwater_medium_with_toluene__185c443d.yaml","freshwater_medium_with_toluene"]]},{"id":"CHEBI:506227","l":"N-acetyl-D-glucosamine","na":44,"nb":6,"a":[["EC%3A1.1.3.29","N-acylhexosamine oxidase"],["EC%3A2.3.1.3","glucosamine N-acetyltransferase"],["EC%3A2.4.1.211","1,3-beta-galactosyl-N-acetylhexosamine phosphorylase"],["EC%3A2.4.1.280","N,N'-diacetylchitobiose phosphorylase"],["EC%3A2.4.1.320","1,4-beta-mannosyl-N-acetylglucosamine phosphorylase"],["EC%3A2.4.1.90","N-acetyllactosamine synthase"]],"b":[["ANAEROBACCA_MEDIUM.yaml","anaerobacca_medium"],["BSK_MEDIUM.yaml","bsk_medium"],["NATRONOARCHAEA_MEDIUM_WITH_GLUCOSAMINE.yaml","natronoarchaea_medium_with_glucosamine"],["barbour_sfoenner_kelly_bsk_ii_medium.yaml","barbour_sfoenner_kelly_bsk_ii_medium"],["m30__354deb2e.yaml","m30"],["modified_bsk_medium__578ddf1c.yaml","modified_bsk_medium"]]},{"id":"CHEBI:24996","l":"lactate","na":23,"nb":6,"a":[["EC%3A1.1.1.436","lactate dehydrogenase (NAD(+),ferredoxin)"],["EC%3A3.5.1.124","protein deglycase"],["RHEA%3A57300","an N(2)-(1-hydroxy-2-oxopropyl)-2'-deoxyguanosine in DNA + H2O = a 2'-deoxyguanosine in DNA + lactate + H(+)"],["RHEA%3A57288","an N(2)-(1-hydroxy-2-oxopropyl)-guanosine in RNA + H2O = a guanosine in RNA + lactate + H(+)"],["RHEA%3A46964","lactate + 2 reduced [2Fe-2S]-[ferredoxin] + 2 NAD(+) = 2 oxidized [2Fe-2S]-[ferredoxin] + pyruvate + 2 NADH"],["RHEA%3A57244","N(2)-(1-hydroxy-2-oxopropyl)-dGTP + H2O = lactate + dGTP + H(+)"]],"b":[["ARCOBACTER_ANAEROPHILUS_MEDIUM.yaml","arcobacter_anaerophilus_medium"],["defined_freshwater_medium_cocl2__f0ffbcc6.yaml","defined_freshwater_medium_cocl2"],["defined_freshwater_medium_coso4__41b1d433.yaml","defined_freshwater_medium_coso4"],["fermentation_medium_lactate_nh4cl.yaml","fermentation_medium_lactate_nh4cl"],["modified_m1_medium_with_20_mm_lactate_pinchuk_et_al.yaml","modified_m1_medium_with_20_mm_lactate_pinchuk_et_al"],["modified_m1_medium_with_lactate_and_glycine_no_nh4cl.yaml","modified_m1_medium_with_lactate_and_glycine_no_nh4cl"]]},{"id":"CHEBI:22653","l":"asparagine","na":6,"nb":21,"a":[["TCDB%3A2.A.25","The Alanine or Glycine:Cation Symporter (AGCS) Family"],["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.13","The C4-Dicarboxylate Uptake (Dcu) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"]],"b":[["CDM_LP.yaml","cdm_lp"],["HALOACTINOMYCES_HALOPHILUS_MEDIUM.yaml","haloactinomyces_halophilus_medium"],["MCD_Medium.yaml","mcd_medium"],["MS10R_Medium.yaml","ms10r_medium"],["MS10_Medium.yaml","ms10_medium"],["MYKORRHIZA_MEDIUM.yaml","mykorrhiza_medium"]]},{"id":"CHEBI:28645","l":"beta-D-fructofuranose","na":6,"nb":20,"a":[["EC%3A2.7.1.3","ketohexokinase"],["EC%3A3.2.1.48","sucrose alpha-glucosidase"],["RHEA%3A18145","beta-D-fructose + ATP = beta-D-fructose 1-phosphate + ADP + H(+)"],["RHEA%3A33791","sucrose 6(F)-phosphate + H2O = beta-D-fructose + beta-D-glucose 6-phosphate"],["RHEA%3A33795","sucrose + H2O = beta-D-fructose + alpha-D-glucose"],["proteintraitsmech%3ABIOLIP_FRU","FRU-binding site"]],"b":[["Clostridium_medium.yaml","clostridium_medium"],["FYP_medium.yaml","fyp_medium"],["Green_Sulfur_Bacterium_Medium.yaml","green_sulfur_bacterium_medium"],["Liquid_Fermentation_Medium.yaml","liquid_fermentation_medium"],["M1D_Medium.yaml","m1d_medium"],["MOORELLA_AN10_MEDIUM.yaml","moorella_an10_medium"]]},{"id":"CHEBI:18246","l":"(1->4)-beta-D-glucan","na":6,"nb":15,"a":[["EC%3A2.4.1.12","cellulose synthase (UDP-forming)"],["EC%3A2.4.1.29","cellulose synthase (GDP-forming)"],["EC%3A2.4.1.49","cellodextrin phosphorylase"],["RHEA%3A17797","[(1->4)-beta-D-glucosyl](n) + GDP-alpha-D-glucose = [(1->4)-beta-D-glucosyl](n+1) + GDP + H(+)"],["RHEA%3A23024","[(1->4)-beta-D-glucosyl](n) + phosphate = [(1->4)-beta-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate"],["RHEA%3A19929","[(1->4)-beta-D-glucosyl](n) + UDP-alpha-D-glucose = [(1->4)-beta-D-glucosyl](n+1) + UDP + H(+)"]],"b":[["ACETIVIBRIO_CELLULOLYTICUS_MEDIUM.yaml","acetivibrio_cellulolyticus_medium"],["CLOSTRIDIUM_CELLULOVORANS_MEDIUM.yaml","clostridium_cellulovorans_medium"],["Clostridium_Cellulolytic_medium.yaml","clostridium_cellulolytic_medium"],["HALOCELLA_CELLULOLYTICA_MEDIUM.yaml","halocella_cellulolytica_medium"],["RUMINICLOSTRIDIUM_CELLOBIOPARUM_MEDIUM.yaml","ruminiclostridium_cellobioparum_medium"],["RUMINICLOSTRIDIUM_PAPYROSOLVENS_MEDIUM.yaml","ruminiclostridium_papyrosolvens_medium"]]},{"id":"CHEBI:17439","l":"cyanocob(III)alamin","na":5,"nb":187,"a":[["EC%3A1.16.1.6","cyanocobalamin reductase"],["RHEA%3A16113","2 cob(II)alamin-[cyanocobalamin reductase] + 2 hydrogen cyanide + NADP(+) = 2 cyanocob(III)alamin + 2 apo-[cyanocobalamin reductase] + NADPH + H(+)"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A1.B.14","The Outer Membrane Receptor (OMR) Family"],["TCDB%3A9.B.87","The Selenoprotein P Receptor (SelP-Receptor) Family"]],"b":[["2ASW.yaml","2asw"],["2asw__59e92e67.yaml","2asw"],["2x_UGA_defined_nocarbon.yaml","2x UGA defined nocarbon"],["3n_bbm_v_recipe_for_customer_orders.yaml","3n_bbm_v_recipe_for_customer_orders"],["ACY.yaml","ACY"],["ALP_defined.yaml","ALP defined"]]},{"id":"CHEBI:16750","l":"guanosine","na":19,"nb":5,"a":[["EC%3A2.4.2.1","purine-nucleoside phosphorylase"],["EC%3A2.4.2.15","guanosine phosphorylase"],["EC%3A2.7.1.73","inosine kinase"],["EC%3A3.5.4.15","guanosine deaminase"],["RHEA%3A27862","3'-GMP + H2O = guanosine + phosphate"],["RHEA%3A27714","GMP + H2O = guanosine + phosphate"]],"b":[["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"]]},{"id":"CHEBI:18107","l":"xanthosine","na":9,"nb":5,"a":[["EC%3A2.1.1.158","7-methylxanthosine synthase"],["EC%3A2.4.2.1","purine-nucleoside phosphorylase"],["EC%3A3.5.4.15","guanosine deaminase"],["RHEA%3A12861","guanosine + H2O + H(+) = xanthosine + NH4(+)"],["RHEA%3A27994","xanthosine + H2O = D-ribose + xanthine"],["RHEA%3A28939","xanthosine(in) + H(+)(in) = xanthosine(out) + H(+)(out)"]],"b":[["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"]]},{"id":"CHEBI:16634","l":"raffinose","na":8,"nb":5,"a":[["EC%3A2.4.1.166","raffinose--raffinose alpha-galactosyltransferase"],["EC%3A2.4.1.67","galactinol--raffinose galactosyltransferase"],["EC%3A2.4.1.82","galactinol--sucrose galactosyltransferase"],["RHEA%3A14125","2 raffinose = 1(F)-alpha-D-galactosylraffinose + sucrose"],["RHEA%3A20776","alpha-D-galactosyl-(1->3)-1D-myo-inositol + raffinose = stachyose + myo-inositol"],["RHEA%3A20161","alpha-D-galactosyl-(1->3)-1D-myo-inositol + sucrose = raffinose + myo-inositol"]],"b":[["MYXOCOCCUS_FLAVESCENS_MEDIUM.yaml","myxococcus_flavescens_medium"],["Modified_SP_Medium.yaml","modified_sp_medium"],["SP_Medium.yaml","sp_medium"],["myxococcus_flavescens_medium__aa6b37a2.yaml","myxococcus_flavescens_medium"],["sp_medium__3b598fd8.yaml","sp_medium"]]},{"id":"CHEBI:16865","l":"gamma-aminobutyric acid","na":5,"nb":6,"a":[["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A2.A.42","The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family"],["TCDB%3A2.A.22","The Neurotransmitter:Sodium Symporter (NSS) Family"],["proteintraitsmech%3ABIOLIP_ABU","ABU-binding site"]],"b":[["CLOSTRIDIUM_AMINOBUTYRICUM_MEDIUM.yaml","clostridium_aminobutyricum_medium"],["NLDM_defined.yaml","NLDM_defined"],["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"]]},{"id":"CHEBI:28911","l":"cob(III)alamin","na":6,"nb":5,"a":[["RHEA%3A81907","(2R,3R,5R)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + methylcob(III)alamin + S-adenosyl-L-methionine = (2R,3R,5S,6R)-6-(methyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A81911","(2R,3R,5S,6R)-6-(methyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + methylcob(III)alamin + S-adenosyl-L-methionine = (2R,3R,5S,6R)-6-(ethyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A76471","cob(III)alamin + AH2 = cob(I)alamin + A + 2 H(+)"],["RHEA%3A81883","cytidine 5'-{[hydroxy(2-hydroxyethyl)phosphonoyl]phosphate} + methylcob(III)alamin + S-adenosyl-L-methionine = cytidine 5'-({hydroxy[(S)-2-hydroxypropyl]phosphonoyl}phosphate) + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A77223","gentamicin X2 + methylcob(III)alamin + S-adenosyl-L-methionine = geneticin + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A81891","N-acetyl-demethyl-L-phosphinothricin + methylcob(III)alamin + S-adenosyl-L-methionine = N-acetyl-L-phosphinothricin + cob(III)alamin + 5'-deoxyadenosine + L-methionine"]],"b":[["MEDIUM_for_SM250.yaml","medium_for_sm250"],["Medium_YCFAGSC.yaml","medium_ycfagsc"],["Medium_for_Freshwater_Flexibacteria.yaml","medium_for_freshwater_flexibacteria"],["Standard_PETC_medium.yaml","standard_petc_medium"],["YCFAG_medium.yaml","ycfag_medium"]]},{"id":"CHEBI:17191","l":"L-isoleucine","na":4,"nb":65,"a":[["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.26","The Branched Chain Amino Acid:Cation Symporter (LIVCS) Family"],["proteintraitsmech%3ABIOLIP_ILE","ILE-binding site"]],"b":[["CDM_LP.yaml","cdm_lp"],["CMM.yaml","cmm"],["CTM_MEDIUM.yaml","ctm_medium"],["Chamberlain_CDM.yaml","chamberlain_cdm"],["Hans_Basal_Media_plus_0.2x_20AA_mix.yaml","Hans Basal Media plus 0.2x 20AA mix"],["MCD_Medium.yaml","mcd_medium"]]},{"id":"CHEBI:17879","l":"4-hydroxybenzoate","na":57,"nb":4,"a":[["EC%3A1.13.11.41","2,4'-dihydroxyacetophenone dioxygenase"],["EC%3A1.14.13.2","4-hydroxybenzoate 3-monooxygenase"],["EC%3A1.14.13.33","4-hydroxybenzoate 3-monooxygenase [NAD(P)H]"],["EC%3A1.14.13.64","4-hydroxybenzoate 1-hydroxylase"],["EC%3A1.14.14.92","benzoate 4-monooxygenase"],["EC%3A1.14.19.55","4-hydroxybenzoate brominase (decarboxylating)"]],"b":[["DIETHYL_PHOSPHONATE_MEDIUM.yaml","diethyl_phosphonate_medium"],["defined_freshwater_medium_cocl2__140b53e4.yaml","defined_freshwater_medium_cocl2"],["defined_freshwater_medium_coso4__7cf7eff3.yaml","defined_freshwater_medium_coso4"],["nutrient_medium_p_hydroxybenzoate.yaml","nutrient_medium_p_hydroxybenzoate"]]},{"id":"CHEBI:16870","l":"choline alfoscerate","na":48,"nb":4,"a":[["EC%3A3.1.1.5","lysophospholipase"],["EC%3A3.1.4.2","glycerophosphocholine phosphodiesterase"],["EC%3A3.1.4.38","glycerophosphocholine cholinephosphodiesterase"],["EC%3A3.3.2.2","lysoplasmalogenase"],["RHEA%3A40835","1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine + 2 H2O = sn-glycerol 3-phosphocholine + 2 (9Z)-octadecenoate + 2 H(+)"],["RHEA%3A40975","1,2-dihexadecanoyl-sn-glycero-3-phosphocholine + 2 H2O = sn-glycerol 3-phosphocholine + 2 hexadecanoate + 2 H(+)"]],"b":[["NLDM_defined_no_P.yaml","NLDM_defined_no_P"],["NLDM_defined_novitamin.yaml","NLDM_defined_novitamin"],["NLDM_defined_pH5.yaml","NLDM_defined_pH5"],["NLDM_defined_pH8.yaml","NLDM_defined_pH8"]]},{"id":"CHEBI:18050","l":"L-glutamine","na":4,"nb":42,"a":[["MCSA%3A596","deuterolysin"],["MCSA%3A477","picornain 3C"],["MCSA%3A763","picornain 3C"],["proteintraitsmech%3ABIOLIP_GLN","GLN-binding site"]],"b":[["CDM_LP.yaml","cdm_lp"],["CTM_MEDIUM.yaml","ctm_medium"],["FRANCISELLA_PERSICA_MEDIUM.yaml","francisella_persica_medium"],["GLUTAMINE_MEDIUM.yaml","glutamine_medium"],["Hans_Basal_Media_plus_0.2x_20AA_mix.yaml","Hans Basal Media plus 0.2x 20AA mix"],["MEDIUM_FOR_TREPONEMA_PARVUM.yaml","medium_for_treponema_parvum"]]},{"id":"CHEBI:17115","l":"L-serine","na":4,"nb":41,"a":[["MCSA%3A609","alpha-lytic endopeptidase"],["MCSA%3A238","assemblin"],["MCSA%3A688","classical-complement-pathway C3/C5 convertase"],["proteintraitsmech%3ABIOLIP_SER","SER-binding site"]],"b":[["AMINOMONAS_MEDIUM.yaml","aminomonas_medium"],["CDM_LP.yaml","cdm_lp"],["CMM.yaml","cmm"],["Hans_Basal_Media_plus_0.2x_20AA_mix.yaml","Hans Basal Media plus 0.2x 20AA mix"],["MEDIUM_FOR_TREPONEMA_PARVUM.yaml","medium_for_treponema_parvum"],["MOPS_Rich_Defined_media_noCarbon.yaml","MOPS Rich Defined media noCarbon"]]},{"id":"CHEBI:17925","l":"alpha-D-glucose","na":35,"nb":4,"a":[["EC%3A2.4.1.231","alpha,alpha-trehalose phosphorylase (configuration-retaining)"],["EC%3A3.1.3.58","sugar-terminal-phosphatase"],["EC%3A3.1.3.9","glucose-6-phosphatase"],["EC%3A3.2.1.10","oligo-1,6-glucosidase"],["EC%3A3.2.1.219","palatinase"],["EC%3A3.2.1.28","alpha,alpha-trehalase"]],"b":[["CDMM.yaml","cdmm"],["MDM.yaml","mdm"],["MM3.yaml","mm3"],["tsb_glucose_medium.yaml","tsb_glucose_medium"]]},{"id":"CHEBI:28869","l":"menadione","na":4,"nb":34,"a":[["RHEA%3A35611","menadiol + 2 O2 = menadione + 2 superoxide + 2 H(+)"],["RHEA%3A69695","menadione + NADH + H(+) = menadiol + NAD(+)"],["RHEA%3A63492","menadione + NADPH + H(+) = menadiol + NADP(+)"],["proteintraitsmech%3ABIOLIP_VK3","VK3-binding site"]],"b":[["ABB.yaml","ABB"],["ACY.yaml","ACY"],["BGDM.yaml","bgdm"],["BHIS.yaml","bhis"],["BHIS_K3.yaml","BHIS_K3"],["BHIS_K3_noGlucose.yaml","BHIS_K3_noGlucose"]]},{"id":"CHEBI:15882","l":"phenol","na":31,"nb":4,"a":[["EC%3A1.14.13.244","phenol 2-monooxygenase (NADH)"],["EC%3A1.14.13.7","phenol 2-monooxygenase (NADPH)"],["EC%3A1.14.14.20","phenol 2-monooxygenase (FADH2)"],["EC%3A2.1.1.25","phenol O-methyltransferase"],["EC%3A2.4.2.55","nicotinate D-ribonucleotide:phenol phospho-D-ribosyltransferase"],["EC%3A2.7.1.238","phenol phosphorylase"]],"b":[["MEDIUM_FOR_BACILLUS_STEAROTHERMOPHILUS.yaml","medium_for_bacillus_stearothermophilus"],["anaerobic_bicarbonate_buffered_medium_with_phenol.yaml","anaerobic_bicarbonate_buffered_medium_with_phenol"],["defined_freshwater_medium_cocl2__ac506908.yaml","defined_freshwater_medium_cocl2"],["defined_freshwater_medium_coso4__0930ab53.yaml","defined_freshwater_medium_coso4"]]},{"id":"CHEBI:28262","l":"dimethyl sulfoxide","na":14,"nb":4,"a":[["EC%3A1.14.13.245","assimilatory dimethylsulfide S-monooxygenase"],["EC%3A1.8.1.17","dimethylsulfone reductase"],["EC%3A1.8.2.4","dimethyl sulfide:cytochrome c2 reductase"],["EC%3A1.8.5.3","respiratory dimethylsulfoxide reductase"],["RHEA%3A30587","2-demethylmenaquinol-8 + dimethyl sulfoxide = 2-demethylmenaquinone-8 + dimethyl sulfide + H2O"],["RHEA%3A30227","2 Fe(III)-[cytochrome c2] + dimethyl sulfide + H2O = 2 Fe(II)-[cytochrome c2] + dimethyl sulfoxide + 2 H(+)"]],"b":[["MINERAL_MEDIUM_WITH_DIBENZOFURAN.yaml","mineral_medium_with_dibenzofuran"],["SYNBIOBACTERIUM_KA13_MEDIUM.yaml","synbiobacterium_ka13_medium"],["mineral_medium_with_2_chlorobenzoate.yaml","mineral_medium_with_2_chlorobenzoate"],["synbiobacterium_ka13_medium__e7f47e80.yaml","synbiobacterium_ka13_medium"]]},{"id":"CHEBI:16856","l":"glutathione","na":4,"nb":11,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16856","requires glutathione"],["MCSA%3A359","lactoglutathione lyase"],["MCSA%3A32","lactoylglutathione lyase"],["proteintraitsmech%3ABIOLIP_GSH","GSH-binding site"]],"b":[["CDM_LP.yaml","cdm_lp"],["FRANCISELLA_PERSICA_MEDIUM.yaml","francisella_persica_medium"],["MEDIUM_FOR_TREPONEMA_PARVUM.yaml","medium_for_treponema_parvum"],["Modified_D58_medium.yaml","modified_d58_medium"],["SULFOBACILLUS_DISULFIDOOXIDANS_MEDIUM.yaml","sulfobacillus_disulfidooxidans_medium"],["clostridium_thermocellum_medium__d9fc1f82.yaml","clostridium_thermocellum_medium"]]},{"id":"CHEBI:9532","l":"thiamine(1+) diphosphate","na":8,"nb":4,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_9532","requires thiamine(1+) diphosphate"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) 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Superfamily"],["TCDB%3A4.A.1","The PTS Glucose-Glucoside (Glc) Family"]],"b":[["ACETOBACTERIUM_FIMETARIUM_MEDIUM.yaml","acetobacterium_fimetarium_medium"],["ACETOBACTERIUM_TUNDRAE_MEDIUM.yaml","acetobacterium_tundrae_medium"],["ANAEROCOLUMNA_MEDIUM.yaml","anaerocolumna_medium"],["CLOSTRIDIUM_FORMICACETICUM_MEDIUM.yaml","clostridium_formicaceticum_medium"],["CLOSTRIDIUM_LJUNGDAHLII_MEDIUM.yaml","clostridium_ljungdahlii_medium"],["MOORELLA_THERMOACETICA_MEDIUM.yaml","moorella_thermoacetica_medium"]]},{"id":"CHEBI:16410","l":"pyridoxamine","na":2,"nb":21,"a":[["GO%3A0070281","pyridoxamine binding"],["proteintraitsmech%3ABIOLIP_PXM","PXM-binding site"]],"b":[["HALORHODOSPIRA_MEDIUM.yaml","halorhodospira_medium"],["MCD_Medium.yaml","mcd_medium"],["MEDIUM_FOR_ROSEOSPIRA.yaml","medium_for_roseospira"],["MEDIUM_WITH_EDTA_AS_CARBON_SOURCE.yaml","medium_with_edta_as_carbon_source"],["MINERAL_MEDIUM_WITH_SULFOBENZOIC_ACID.yaml","mineral_medium_with_sulfobenzoic_acid"],["MS10R_Medium.yaml","ms10r_medium"]]},{"id":"CHEBI:17924","l":"D-glucitol","na":20,"nb":2,"a":[["EC%3A1.1.1.14","L-iditol 2-dehydrogenase"],["EC%3A1.1.1.289","sorbose reductase"],["EC%3A1.1.3.40","D-mannitol oxidase"],["EC%3A1.1.99.21","D-sorbitol dehydrogenase (acceptor)"],["EC%3A1.1.99.28","glucose-fructose oxidoreductase"],["EC%3A2.7.1.198","protein-N(pi)-phosphohistidine--D-sorbitol phosphotransferase"]],"b":[["5_sorbitol_medium.yaml","5_sorbitol_medium"],["5_sorbitol_medium__c395a410.yaml","5_sorbitol_medium"]]},{"id":"CHEBI:15741","l":"succinic acid","na":2,"nb":16,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["proteintraitsmech%3ABIOLIP_SIN","SIN-binding site"]],"b":[["AQUASPIRILLUM_MEDIUM_II.yaml","aquaspirillum_medium_ii"],["DESULFUROBACTERIUM_MEDIUM.yaml","desulfurobacterium_medium"],["MAGNETOSPIRILLUM_MEDIUM.yaml","magnetospirillum_medium"],["MG_minimal_media.yaml","MG minimal media"],["MG_minimal_media_noIron.yaml","MG minimal media noIron"],["PETROBACTER_SUCCINIMANDENS_MEDIUM.yaml","petrobacter_succinimandens_medium"]]},{"id":"CHEBI:16450","l":"","na":14,"nb":2,"a":[["EC%3A1.14.11.10","pyrimidine-deoxynucleoside 1'-dioxygenase"],["EC%3A1.14.11.3","pyrimidine-deoxynucleoside 2'-dioxygenase"],["EC%3A2.4.2.2","pyrimidine-nucleoside phosphorylase"],["EC%3A3.5.4.5","cytidine deaminase"],["RHEA%3A13433","2'-deoxycytidine + H2O + H(+) = 2'-deoxyuridine + NH4(+)"],["RHEA%3A23316","2'-deoxyuridine + 2-oxoglutarate + O2 = 2-deoxy-D-ribono-1,4-lactone + uracil + succinate + CO2"]],"b":[["SGW_Northen_Exometabolite_mix_5x.yaml","SGW Northen Exometabolite mix 5x"],["Soil_Defined_Media_%28SDM%29.yaml","Soil Defined Media (SDM)"]]},{"id":"CHEBI:17045","l":"dinitrogen oxide","na":13,"nb":2,"a":[["EC%3A1.7.1.14","nitric oxide reductase [NAD(P)(+), nitrous oxide-forming]"],["EC%3A1.7.2.4","nitrous-oxide reductase"],["EC%3A1.7.2.5","nitric-oxide reductase (cytochrome c)"],["EC%3A1.7.5.2","nitric oxide reductase (menaquinol)"],["RHEA%3A30215","a menaquinol + 2 nitric oxide = nitrous oxide + a menaquinone + H2O"],["RHEA%3A43108","N2 + 2 Fe(III)-[cytochrome c] + H2O = nitrous oxide + 2 Fe(II)-[cytochrome c] + 2 H(+)"]],"b":[["PM_N2O.yaml","PM N2O"],["PM_argon75_N2O25.yaml","PM argon75 N2O25"]]},{"id":"CHEBI:29073","l":"L-ascorbic acid","na":2,"nb":13,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_29073","requires L-ascorbic acid"],["proteintraitsmech%3ABIOLIP_ASC","ASC-binding site"]],"b":[["CTM_MEDIUM.yaml","ctm_medium"],["MG_minimal_media.yaml","MG minimal media"],["MG_minimal_media_noCarbon.yaml","MG minimal media noCarbon"],["MG_minimal_media_noIron.yaml","MG minimal media noIron"],["THERMODESULFOVIBRIO_MEDIUM_FOR_N1.yaml","thermodesulfovibrio_medium_for_n1"],["THERMODESULFOVIBRIO_YELLOWSTONII_MEDIUM.yaml","thermodesulfovibrio_yellowstonii_medium"]]},{"id":"CHEBI:28077","l":"rifampicin","na":12,"nb":2,"a":[["ARO%3A3007073","Bacillus subtilis rpoB mutants conferring resistance to rifampin"],["ARO%3A3004480","Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin"],["ARO%3A3004563","Clostridioides difficile rpoB with mutation conferring resistance to rifampicin"],["ARO%3A3003288","Escherichia coli rpoB mutants conferring resistance to rifampicin"],["ARO%3A3007051","Helicobacter pylori rpoB mutation conferring resistance to rifampicin"],["ARO%3A3003284","Mycobacterium leprae rpoB mutations conferring resistance to rifampicin"]],"b":[["lb_luria_bertani_agar_with_kanamycin_and_rifampicin__0472ff8f.yaml","lb_luria_bertani_agar_with_kanamycin_and_rifampicin"],["luria_bertani_lb_antibiotics.yaml","luria_bertani_lb_antibiotics"]]},{"id":"CHEBI:36218","l":"beta-lactose","na":2,"nb":9,"a":[["RHEA%3A28659","beta-lactose + H2O = beta-D-galactose + beta-D-glucose"],["RHEA%3A59352","beta-lactose + O2 = lactobiono-1,5-lactone + H2O2"]],"b":[["ALKALINE_LACTOSE_AGAR.yaml","alkaline_lactose_agar"],["LACTOBACILLUS_MEDIUM_I.yaml","lactobacillus_medium_i"],["M17_medium_supplemented_with_20_g_L_of_lactose.yaml","m17_medium_supplemented_with_20_g_l_of_lactose"],["ZMB_Gut.yaml","ZMB Gut"],["gam_broth_with_1_lactose.yaml","gam_broth_with_1_lactose"],["m17_broth_containing_lactose.yaml","m17_broth_containing_lactose"]]},{"id":"CHEBI:18403","l":"L-arabinitol","na":8,"nb":2,"a":[["EC%3A1.1.1.12","L-arabinitol 4-dehydrogenase"],["EC%3A1.1.1.13","L-arabinitol 2-dehydrogenase"],["EC%3A1.1.1.21","aldose reductase"],["RHEA%3A25225","L-arabinitol + NAD(+) = L-arabinose + NADH + H(+)"],["RHEA%3A21356","L-arabinitol + NAD(+) = L-ribulose + NADH + H(+)"],["RHEA%3A16381","L-arabinitol + NAD(+) = L-xylulose + NADH + H(+)"]],"b":[["SGW_Northen_Exometabolite_mix_5x.yaml","SGW Northen Exometabolite mix 5x"],["Soil_Defined_Media_%28SDM%29.yaml","Soil Defined Media (SDM)"]]},{"id":"CHEBI:17824","l":"propan-2-ol","na":7,"nb":2,"a":[["EC%3A1.1.1.80","isopropanol dehydrogenase (NADP(+))"],["EC%3A1.14.13.227","propane 2-monooxygenase"],["RHEA%3A62196","propan-2-ol + 2 Fe(III)-[cytochrome c] = acetone + 2 Fe(II)-[cytochrome c] + 2 H(+)"],["RHEA%3A41984","propan-2-ol + NAD(+) = acetone + NADH + H(+)"],["RHEA%3A21792","propan-2-ol + NADP(+) = acetone + NADPH + H(+)"],["RHEA%3A49992","propane + NADH + O2 + H(+) = propan-2-ol + NAD(+) + H2O"]],"b":[["METHANOGENIUM_CV_MEDIUM.yaml","methanogenium_cv_medium"],["METHANOSPIRILLUM_SK_MEDIUM.yaml","methanospirillum_sk_medium"]]},{"id":"CHEBI:45296","l":"hexadecane","na":2,"nb":7,"a":[["RHEA%3A77375","heptadecanoate + hnu + H(+) = hexadecane + CO2"],["RHEA%3A76747","hexadecane + reduced [NADPH--hemoprotein reductase] + O2 = 9-hexadecanol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"]],"b":[["FUNDIBACTER_JADENSIS_MEDIUM.yaml","fundibacter_jadensis_medium"],["MODIFIED_SEA_WATER_AGAR.yaml","modified_sea_water_agar"],["dehalobacter_restrictus_medium_tce.yaml","dehalobacter_restrictus_medium_tce"],["dehalobacter_restrictus_medium_tce__3ce89046.yaml","dehalobacter_restrictus_medium_tce"],["desulfuromonas_medium_tce.yaml","desulfuromonas_medium_tce"],["m9_with_1_0_glucose_and_40_emulsion.yaml","m9_with_1_0_glucose_and_40_emulsion"]]},{"id":"CHEBI:16196","l":"oleic acid","na":2,"nb":6,"a":[["TCDB%3A9.A.76","The Omega3 Fatty Acid Desaturase 3/Putative Transporter (FAD3) 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(MFS)"]],"b":[["PPM.yaml","ppm"],["R2A_Kan50_Tween01_Cycloheximide200.yaml","R2A_Kan50_Tween01_Cycloheximide200"],["alkaliphiles_pirellula_medium_m1py.yaml","alkaliphiles_pirellula_medium_m1py"],["chlamydia_serpentis_poikilotherma_medium.yaml","chlamydia_serpentis_poikilotherma_medium"],["pirellula_medium_m31py.yaml","pirellula_medium_m31py"],["ppm__7a6a33ba.yaml","ppm"]]},{"id":"CHEBI:28053","l":"melibiose","na":6,"nb":2,"a":[["RHEA%3A28663","melibiose + H2O = D-galactose + D-glucose"],["RHEA%3A28855","melibiose(in) + H(+)(in) = melibiose(out) + H(+)(out)"],["RHEA%3A28847","melibiose(in) + Li(+)(in) = melibiose(out) + Li(+)(out)"],["RHEA%3A28851","melibiose(in) + Na(+)(in) = melibiose(out) + Na(+)(out)"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["MCSA%3A913","alpha-galactosidase"]],"b":[["MP_AGAR.yaml","mp_agar"],["mp_agar__3414ec19.yaml","mp_agar"]]},{"id":"CHEBI:28997","l":"","na":6,"nb":2,"a":[["EC%3A3.5.4.4","adenosine deaminase"],["RHEA%3A28190","2'-deoxyadenosine + H2O + H(+) = 2'-deoxyinosine + NH4(+)"],["RHEA%3A29971","2'-deoxyinosine(in) + H(+)(in) = 2'-deoxyinosine(out) + H(+)(out)"],["RHEA%3A27750","2'-deoxyinosine + phosphate = 2-deoxy-alpha-D-ribose 1-phosphate + hypoxanthine"],["RHEA%3A29383","dIMP + H2O = 2'-deoxyinosine + phosphate"],["RHEA%3A69572","dIMP + inosine = 2'-deoxyinosine + IMP"]],"b":[["SGW_Northen_Exometabolite_mix_5x.yaml","SGW Northen Exometabolite mix 5x"],["Soil_Defined_Media_%28SDM%29.yaml","Soil Defined Media (SDM)"]]},{"id":"CHEBI:15729","l":"L-ornithine","na":2,"nb":5,"a":[["MCSA%3A12","ornithine carbamoyltransferase"],["proteintraitsmech%3ABIOLIP_ORN","ORN-binding 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(MFS)"],["proteintraitsmech%3ABIOLIP_4HP","4HP-binding site"]],"b":[["ENDOMICROBIUM_PROAVITUM_RSA_MEDIUM.yaml","endomicrobium_proavitum_rsa_medium"],["MODIFIED_AM5_MEDIUM_2.yaml","modified_am5_medium_2"],["am5_medium_elusimicrobium_medium.yaml","am5_medium_elusimicrobium_medium"],["endomicrobium_proavitum_rsa_medium__51692939.yaml","endomicrobium_proavitum_rsa_medium"],["pjc_with_4_hpa.yaml","pjc_with_4_hpa"]]},{"id":"CHEBI:35899","l":"crotonate","na":5,"nb":2,"a":[["EC%3A1.3.1.31","2-enoate reductase"],["RHEA%3A74903","(2E)-2-butenoate + ATP + H(+) = (2E)-but-2-enoyl-AMP + diphosphate"],["RHEA%3A74899","(2E)-2-butenoate + holo-[ACP] + ATP = (2E)-butenoyl-[ACP] + AMP + diphosphate"],["RHEA%3A10200","butanoate + NAD(+) = (2E)-2-butenoate + NADH + H(+)"],["RHEA%3A69172","N(6)-(2E)-butenoyl-L-lysyl-[protein] + H2O = (2E)-2-butenoate + L-lysyl-[protein]"]],"b":[["SERPENTINICELLA_MEDIUM.yaml","serpentinicella_medium"],["for_dsm_17722.yaml","for_dsm_17722"]]},{"id":"CHEBI:15346","l":"coenzyme A","na":2,"nb":4,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_15346","requires coenzyme A"],["proteintraitsmech%3ABIOLIP_COA","COA-binding site"]],"b":[["HELMUTKOENIGIA_MEDIUM.yaml","helmutkoenigia_medium"],["TREPONEMA_ISOPTEROCOLA_MEDIUM.yaml","treponema_isopterocola_medium"],["omiz_pat_medium_modified.yaml","omiz_pat_medium_modified"],["treponema_isopterocola_medium__e7b07692.yaml","treponema_isopterocola_medium"]]},{"id":"CHEBI:18405","l":"","na":2,"nb":4,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_18405","requires pyridoxal 5'-phosphate"],["proteintraitsmech%3ABIOLIP_PLP","PLP-binding site"]],"b":[["HELMUTKOENIGIA_MEDIUM.yaml","helmutkoenigia_medium"],["TREPONEMA_ISOPTEROCOLA_MEDIUM.yaml","treponema_isopterocola_medium"],["omiz_pat_medium_modified.yaml","omiz_pat_medium_modified"],["treponema_isopterocola_medium__e7b07692.yaml","treponema_isopterocola_medium"]]},{"id":"CHEBI:22868","l":"bile salt","na":2,"nb":4,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"]],"b":[["1298.yaml","1298"],["ALKALINE_CELLULOSE_AGAR.yaml","alkaline_cellulose_agar"],["acido_thermophile_medium.yaml","acido_thermophile_medium"],["modified_eggerth_gagnon_medium.yaml","modified_eggerth_gagnon_medium"]]},{"id":"CHEBI:25548","l":"nitrilotriacetate(3-)","na":2,"nb":4,"a":[["EC%3A1.14.14.10","nitrilotriacetate monooxygenase"],["RHEA%3A31359","nitrilotriacetate + FMNH2 + O2 = aminodiacetate + FMN + glyoxylate + H2O"]],"b":[["MEDIUM_FOR_CHELATOCOCCUS_BUHARII.yaml","medium_for_chelatococcus_buharii"],["NITRILOTRIACETATE_MEDIUM.yaml","nitrilotriacetate_medium"],["methanoregula_peat_medium__84e41704.yaml","methanoregula_peat_medium"],["methanosphaerula_peat_medium__1238714d.yaml","methanosphaerula_peat_medium"]]},{"id":"CHEBI:75456","l":"2-stearoylglycerol","na":2,"nb":4,"a":[["RHEA%3A38519","1-(9Z-octadecenoyl)-2-octadecanoyl-sn-glycerol + H2O = 2-octadecanoylglycerol + (9Z)-octadecenoate + H(+)"],["proteintraitsmech%3ABIOLIP_2JT","2JT-binding site"]],"b":[["LEEMING_AND_NOTMAN_AGAR.yaml","leeming_and_notman_agar"],["leeming_amp_notman_agar_lna_leeming_amp_notman_1987_in_the_yeasts_a_taxonomic_study_5th_edn.yaml","leeming_amp_notman_agar_lna_leeming_amp_notman_1987_in_the_yeasts_a_taxonomic_study_5th_edn"],["leeming_amp_notman_agar_modified_mlna.yaml","leeming_amp_notman_agar_modified_mlna"],["leeming_and_notman_agar__33424fef.yaml","leeming_and_notman_agar"]]},{"id":"NCBITaxon:556484","l":"","na":4,"nb":2,"a":[["TED%3AAF-B7GAJ8-F1-model_v4_TED01","TED highly-symmetric fold AF-B7GAJ8-F1-model_v4_TED01"],["TED%3AAF-B7G520-F1-model_v4_TED02","TED novel fold AF-B7G520-F1-model_v4_TED02"],["TED%3AAF-B7G8V4-F1-model_v4_TED02","TED novel fold AF-B7G8V4-F1-model_v4_TED02"],["TED%3AAF-B7GB31-F1-model_v4_TED01","TED novel fold AF-B7GB31-F1-model_v4_TED01"]],"b":[["2ASW.yaml","2asw"],["F_2_Medium.yaml","f_2_medium"]]},{"id":"CHEBI:136511","l":"manganese dioxide","na":3,"nb":2,"a":[["EC%3A1.16.3.3","manganese 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phosphorylase"]],"b":[["mapped/Glucose_Maltose_Cellobiose_Starch_Glycerol.yaml","Glucose + Maltose + Cellobiose + Starch + Glycerol"],["mapped/Glycerol.yaml","Glycerol"],["mapped/Glycerol_2.yaml","glycerol"]]},{"id":"CHEBI:17790","l":"methanol","na":86,"nb":3,"a":[["EC%3A1.1.1.244","methanol dehydrogenase"],["EC%3A1.1.2.10","lanthanide-dependent methanol dehydrogenase"],["EC%3A1.1.2.7","methanol dehydrogenase (cytochrome c)"],["EC%3A1.1.99.37","methanol dehydrogenase (nicotinoprotein)"],["EC%3A1.14.13.25","methane monooxygenase (soluble)"],["EC%3A1.14.14.117","aflatoxin B synthase"]],"b":[["mapped/Formatemethanol.yaml","Formate+methanol"],["mapped/H2methanol.yaml","H2+methanol"],["mapped/Methanol.yaml","Methanol"]]},{"id":"CHEBI:17268","l":"myo-inositol","na":42,"nb":3,"a":[["EC%3A1.1.1.18","inositol 2-dehydrogenase"],["EC%3A1.1.5.n1","quinoprotein inositol dehydrogenase"],["EC%3A1.13.99.1","inositol oxygenase"],["EC%3A2.1.1.129","inositol 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c2 reductase"],["EC%3A1.8.5.3","respiratory dimethylsulfoxide reductase"],["EC%3A2.1.1.19","trimethylsulfonium--tetrahydrofolate N-methyltransferase"],["EC%3A2.1.1.334","methanethiol S-methyltransferase"]],"b":[["mapped/Dimethyl_Sulfide.yaml","Dimethyl sulfide"],["mapped/Formatedimethylsulfide.yaml","Formate+dimethylsulfide"],["mapped/H2dimethylsulfide.yaml","H2+dimethylsulfide"]]},{"id":"CHEBI:8150","l":"Bacto Soytone","na":20,"nb":3,"a":[["TCDB%3A2.A.31","The Anion Exchanger (AE) Family"],["TCDB%3A1.A.31","The Annexin (Annexin) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A9.A.36","The Ca2+-dependent Phospholipid Scramblase (Scramblase) Family"],["TCDB%3A1.A.17","The Calcium-dependent Chloride Channel (Ca-ClC) Family"],["TCDB%3A9.A.14","The G-protein-coupled receptor (GPCR) Family"]],"b":[["mapped/Bacto_Soytone.yaml","Bacto Soytone"],["mapped/Sodium_L-lactate.yaml","Sodium L-lactate"],["mapped/Soy_Peptone.yaml","Soy peptone"]]},{"id":"CHEBI:15428","l":"glycine","na":13,"nb":3,"a":[["MCSA%3A718","caspase-1"],["MCSA%3A599","dipeptidase E"],["MCSA%3A906","gelatinase A"],["MCSA%3A762","glycine C-acetyltransferase"],["MCSA%3A746","L-peptidase"],["MCSA%3A477","picornain 3C"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/Glycine.yaml","Glycine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16808","l":"2-dehydro-D-gluconate","na":12,"nb":3,"a":[["EC%3A1.1.1.215","gluconate 2-dehydrogenase"],["EC%3A1.1.1.274","2,5-didehydrogluconate reductase (2-dehydro-D-gluconate-forming)"],["EC%3A1.1.99.3","gluconate 2-dehydrogenase (acceptor)"],["EC%3A1.1.99.4","dehydrogluconate dehydrogenase"],["EC%3A2.7.1.13","dehydrogluconokinase"],["RHEA%3A12368","2-dehydro-D-gluconate + A = 2,5-didehydro-D-gluconate + AH2"]],"b":[["mapped/2-dehydro-D-gluconate.yaml","2-dehydro-D-gluconate"],["mapped/Potassium_2-dehydro-D-gluconate.yaml","Potassium 2-dehydro-D-gluconate"],["mapped/Potassium_2-ketogluconate.yaml","Potassium 2-ketogluconate"]]},{"id":"CHEBI:16977","l":"L-alanine","na":11,"nb":3,"a":[["ARO%3A3004943","cycloserine resistant ald"],["ARO%3A3004946","cycloserine resistant alr"],["ARO%3A3004945","Mycobacterium tuberculosis ald mutations confer resistance to cycloserine"],["ARO%3A3004947","Mycobacterium tuberculosis alr with mutation conferring resistance to cycloserine"],["MCSA%3A609","alpha-lytic endopeptidase"],["MCSA%3A238","assemblin"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-alanine.yaml","L-Alanine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:58143","l":"5-dehydro-D-gluconate","na":10,"nb":3,"a":[["EC%3A1.1.1.264","L-idonate 5-dehydrogenase [NAD(P)(+)]"],["EC%3A1.1.1.366","L-idonate 5-dehydrogenase (NAD(+))"],["EC%3A1.1.1.69","gluconate 5-dehydrogenase"],["RHEA%3A30103","2,5-didehydro-D-gluconate + NADH + H(+) = 5-dehydro-D-gluconate + NAD(+)"],["RHEA%3A28819","5-dehydro-D-gluconate(in) + H(+)(in) = 5-dehydro-D-gluconate(out) + H(+)(out)"],["RHEA%3A27634","5-dehydro-D-gluconate + NADP(+) = 2,5-didehydro-D-gluconate + NADPH + H(+)"]],"b":[["mapped/5-dehydro-D-gluconate.yaml","5-dehydro-D-gluconate"],["mapped/Potassium_5-dehydro-D-gluconate.yaml","Potassium 5-dehydro-D-gluconate"],["mapped/Potassium_5-ketogluconate.yaml","Potassium 5-ketogluconate"]]},{"id":"CHEBI:18167","l":"alpha-maltose","na":9,"nb":3,"a":[["EC%3A5.1.3.21","maltose epimerase"],["EC%3A5.1.3.3","aldose 1-epimerase"],["RHEA%3A21228","alpha-maltose = beta-maltose"],["MCSA%3A479","4-alpha-glucanotransferase"],["MCSA%3A397","alpha-amylase"],["MCSA%3A905","glucan 1,4-alpha-maltohydrolase"]],"b":[["mapped/Maltose.yaml","Maltose"],["mapped/Maltose_2.yaml","maltose"],["mapped/Starch.yaml","Starch"]]},{"id":"CHEBI:33229","l":"vitamin (role)","na":3,"nb":9,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.21","The Solute:Sodium Symporter (SSS) Family"]],"b":[["mapped/4-Pyridoxic_Acid.yaml","4-Pyridoxic acid"],["mapped/Ca-folinate.yaml","Ca-folinate"],["mapped/Fad.yaml","FAD"],["mapped/Folinic_Acid.yaml","Folinic acid"],["mapped/L-Carnitine.yaml","L-Carnitine"],["mapped/Na-ascorbate.yaml","Na-ascorbate"]]},{"id":"CHEBI:17015","l":"riboflavin","na":3,"nb":8,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_17015","requires riboflavin"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["proteintraitsmech%3ABIOLIP_RBF","RBF-binding site"]],"b":[["mapped/ATCC_Wolfes_Vitamin_Mix.yaml","ATCC Wolfe's vitamin mix"],["mapped/DL_Vitamins.yaml","DL vitamins"],["mapped/Mc_vitamins.yaml","Mc_vitamins"],["mapped/Riboflavin.yaml","Riboflavin"],["mapped/Thauers_Vitamin_Mix.yaml","Thauer's vitamin mix"],["mapped/Thauers_Vitamin_Mix_No_Biotin.yaml","Thauer's vitamin mix no Biotin"]]},{"id":"CHEBI:17029","l":"chitin","na":8,"nb":3,"a":[["EC%3A2.4.1.16","chitin synthase"],["EC%3A3.5.1.41","chitin deacetylase"],["RHEA%3A85463","[(1->4)-N-acetyl-beta-D-glucosaminyl](n) = [(1->4)-N-acetyl-beta-D-glucosaminyl](n-1)-N-acetyl-alpha-D-glucosamine"],["RHEA%3A50672","[(1->4)-N-acetyl-beta-D-glucosaminyl](n) + H2O = [(1->4)-N-acetyl-beta-D-glucosaminyl](n-2) + N,N'-diacetylchitobiose"],["RHEA%3A85003","[(1->4)-N-acetyl-beta-D-glucosaminyl](n)-N-acetyl-alpha-D-glucosamine + H2O = [(1->4)-N-acetyl-beta-D-glucosaminyl](n) + N-acetyl-alpha-D-glucosamine"],["RHEA%3A10464","[(1->4)-N-acetyl-beta-D-glucosaminyl](n) + n H2O = chitosan + n acetate"]],"b":[["mapped/Chitin.yaml","Chitin"],["unmapped/Chitin_From_Shrimp_Shells.yaml","Chitin from shrimp shells"],["unmapped/Colloidal_Chitin.yaml","Colloidal chitin"]]},{"id":"CHEBI:18019","l":"L-lysine","na":8,"nb":3,"a":[["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A2.A.53","The Sulfate Permease (SulP) Family"],["MCSA%3A746","L-peptidase"],["MCSA%3A786","peptidyl-Lys metalloendopeptidase"],["MCSA%3A597","ubiquitinyl hydrolase 1 (peptidase C12 type)"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-lysine.yaml","L-Lysine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:27470","l":"folic acid","na":3,"nb":7,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_27470","requires folic acid"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["proteintraitsmech%3ABIOLIP_FOL","FOL-binding site"]],"b":[["mapped/ATCC_Wolfes_Vitamin_Mix.yaml","ATCC Wolfe's vitamin mix"],["mapped/DL_Vitamins.yaml","DL vitamins"],["mapped/Folic_Acid.yaml","Folic acid"],["mapped/Mc_vitamins.yaml","Mc_vitamins"],["mapped/Thauers_Vitamin_Mix.yaml","Thauer's vitamin mix"],["mapped/Thauers_Vitamin_Mix_No_Biotin.yaml","Thauer's vitamin mix no Biotin"]]},{"id":"CHEBI:17053","l":"L-aspartic acid","na":3,"nb":5,"a":[["MCSA%3A718","caspase-1"],["MCSA%3A599","dipeptidase E"],["proteintraitsmech%3ABIOLIP_ASP","ASP-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-Aspartic_Acid_Potassium_Salt.yaml","L-Aspartic acid potassium salt"],["mapped/L-Aspartic_Acid_Sodium_Salt_Monohydrate.yaml","L-Aspartic acid sodium salt monohydrate"],["mapped/L-aspartic_Acid.yaml","L-Aspartic acid"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16015","l":"L-glutamic acid","na":3,"nb":4,"a":[["MCSA%3A747","gamma-glutamyl hydrolase"],["proteintraitsmech%3ABIOLIP_GGL","GGL-binding site"],["proteintraitsmech%3ABIOLIP_GLU","GLU-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-Glutamic_Acid_Monopotassium_Salt_Monohydrate.yaml","L-Glutamic acid monopotassium salt monohydrate"],["mapped/L-glutamic_Acid.yaml","L-Glutamic acid"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17115","l":"L-serine","na":4,"nb":3,"a":[["MCSA%3A609","alpha-lytic endopeptidase"],["MCSA%3A238","assemblin"],["MCSA%3A688","classical-complement-pathway C3/C5 convertase"],["proteintraitsmech%3ABIOLIP_SER","SER-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-serine.yaml","L-Serine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17191","l":"L-isoleucine","na":4,"nb":3,"a":[["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.26","The Branched Chain Amino Acid:Cation Symporter (LIVCS) Family"],["proteintraitsmech%3ABIOLIP_ILE","ILE-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-isoleucine.yaml","L-Isoleucine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:18050","l":"L-glutamine","na":4,"nb":3,"a":[["MCSA%3A596","deuterolysin"],["MCSA%3A477","picornain 3C"],["MCSA%3A763","picornain 3C"],["proteintraitsmech%3ABIOLIP_GLN","GLN-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-glutamine.yaml","L-Glutamine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16467","l":"L-arginine","na":3,"nb":3,"a":[["MCSA%3A688","classical-complement-pathway C3/C5 convertase"],["MCSA%3A425","plasmin"],["MCSA%3A798","t-plasminogen activator"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-arginine.yaml","L-Arginine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16643","l":"L-methionine","na":3,"nb":3,"a":[["MCSA%3A917","methionyl aminopeptidase"],["MCSA%3A965","Viperin"],["proteintraitsmech%3ABIOLIP_MET","MET-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-methionine.yaml","L-Methionine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17203","l":"L-proline","na":3,"nb":3,"a":[["MCSA%3A403","astacin"],["MCSA%3A379","Xaa-Pro aminopeptidase"],["proteintraitsmech%3ABIOLIP_PRO","PRO-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-proline.yaml","L-Proline"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17295","l":"L-phenylalanine","na":3,"nb":3,"a":[["MCSA%3A595","scytalidopepsin B"],["MCSA%3A598","streptopain"],["proteintraitsmech%3ABIOLIP_PHE","PHE-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-phenylalanine.yaml","L-Phenylalanine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:30915","l":"2-oxoglutaric acid","na":3,"nb":3,"a":[["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"],["TCDB%3A2.A.56","The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family"],["proteintraitsmech%3ABIOLIP_AKG","AKG-binding site"]],"b":[["mapped/A-Ketoglutaric_Acid_Disodium_Salt_Hydrate.yaml","a-Ketoglutaric acid disodium salt hydrate"],["mapped/Alpha-ketoglutaric_Acid.yaml","alpha-ketoglutaric acid"],["mapped/Na2_Alpha-ketoglutarate.yaml","Na2 alpha-ketoglutarate"]]},{"id":"CHEBI:29034","l":"iron(3+)","na":376,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_29034","requires iron(3+)"],["EC%3A1.1.2.10","lanthanide-dependent methanol dehydrogenase"],["EC%3A1.1.2.11","glucoside 3-dehydrogenase (cytochrome c)"],["EC%3A1.1.2.2","mannitol dehydrogenase (cytochrome)"],["EC%3A1.1.2.3","L-lactate dehydrogenase (cytochrome)"],["EC%3A1.1.2.4","D-lactate dehydrogenase (cytochrome)"]],"b":[["mapped/Ferric_Iron.yaml","Ferric Iron"],["mapped/Ferrous_Ion.yaml","Ferrous Ion"]]},{"id":"CHEBI:17154","l":"nicotinamide","na":92,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_17154","requires nicotinamide"],["EC%3A2.1.1.1","nicotinamide N-methyltransferase"],["EC%3A2.3.1.286","protein acetyllysine N-acetyltransferase"],["EC%3A2.3.1.313","NAD-dependent lipoamidase"],["EC%3A2.4.2.12","nicotinamide phosphoribosyltransferase"],["EC%3A2.4.2.31","NAD(+)--protein-arginine ADP-ribosyltransferase"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Nicotinamide.yaml","Nicotinamide"]]},{"id":"CHEBI:16113","l":"cholesterol","na":82,"nb":2,"a":[["EC%3A1.1.3.6","cholesterol oxidase"],["EC%3A1.14.14.23","cholesterol 7alpha-monooxygenase"],["EC%3A1.14.14.25","cholesterol 24-hydroxylase"],["EC%3A1.14.15.6","cholesterol monooxygenase (side-chain-cleaving)"],["EC%3A1.14.19.21","cholesterol 7-desaturase"],["EC%3A1.14.99.38","cholesterol 25-monooxygenase"]],"b":[["mapped/Cholesterol_Lipid_Concentrate.yaml","cholesterol lipid concentrate"],["mapped/cholesterol.yaml","cholesterol"]]},{"id":"CHEBI:15354","l":"choline","na":78,"nb":2,"a":[["EC%3A1.1.3.17","choline oxidase"],["EC%3A1.1.99.1","choline dehydrogenase"],["EC%3A1.14.15.7","choline monooxygenase"],["EC%3A2.3.1.6","choline O-acetyltransferase"],["EC%3A2.3.1.91","sinapoylglucose--choline O-sinapoyltransferase"],["EC%3A2.7.1.32","choline kinase"]],"b":[["mapped/Choline.yaml","Choline"],["unmapped/Cholinium_Alpha_Ketoglutarate.yaml","Cholinium alpha ketoglutarate"]]},{"id":"CHEBI:16763","l":"2-oxobutanoate","na":51,"nb":2,"a":[["EC%3A1.1.1.n5","3-methylmalate dehydrogenase"],["EC%3A1.2.7.1","pyruvate synthase"],["EC%3A2.2.1.6","acetolactate synthase"],["EC%3A2.3.3.6","2-ethylmalate synthase"],["EC%3A2.6.1.44","alanine--glyoxylate transaminase"],["EC%3A3.5.99.10","2-iminobutanoate/2-iminopropanoate deaminase"]],"b":[["mapped/2-oxobutanoate.yaml","2-oxobutanoate"],["mapped/2-oxobutyric_Acid_Sodium_Salt.yaml","2-oxobutyric acid sodium salt"]]},{"id":"CHEBI:16870","l":"choline alfoscerate","na":48,"nb":2,"a":[["EC%3A3.1.1.5","lysophospholipase"],["EC%3A3.1.4.2","glycerophosphocholine phosphodiesterase"],["EC%3A3.1.4.38","glycerophosphocholine cholinephosphodiesterase"],["EC%3A3.3.2.2","lysoplasmalogenase"],["RHEA%3A40835","1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine + 2 H2O = sn-glycerol 3-phosphocholine + 2 (9Z)-octadecenoate + 2 H(+)"],["RHEA%3A40975","1,2-dihexadecanoyl-sn-glycero-3-phosphocholine + 2 H2O = sn-glycerol 3-phosphocholine + 2 hexadecanoate + 2 H(+)"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Sn-glycero-3-phosphocholine.yaml","sn-glycero-3-phosphocholine"]]},{"id":"CHEBI:17568","l":"uracil","na":47,"nb":2,"a":[["EC%3A1.14.11.10","pyrimidine-deoxynucleoside 1'-dioxygenase"],["EC%3A1.14.99.46","pyrimidine monooxygenase"],["EC%3A1.17.99.4","uracil/thymine dehydrogenase"],["EC%3A1.3.1.1","dihydrouracil dehydrogenase (NAD(+))"],["EC%3A1.3.1.2","dihydropyrimidine dehydrogenase (NADP(+))"],["EC%3A1.3.3.7","dihydrouracil oxidase"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Uracil.yaml","Uracil"]]},{"id":"CHEBI:16708","l":"adenine","na":44,"nb":2,"a":[["EC%3A1.5.99.12","cytokinin dehydrogenase"],["EC%3A2.4.2.28","S-methyl-5'-thioadenosine phosphorylase"],["EC%3A2.4.2.52","triphosphoribosyl-dephospho-CoA synthase"],["EC%3A2.4.2.57","AMP phosphorylase"],["EC%3A2.4.2.7","adenine phosphoribosyltransferase"],["EC%3A2.4.99.17","S-adenosylmethionine:tRNA ribosyltransferase-isomerase"]],"b":[["mapped/Adenine.yaml","Adenine"],["mapped/Adenine_Hydrochloride_Hydrate.yaml","Adenine hydrochloride hydrate"]]},{"id":"CHEBI:506227","l":"N-acetyl-D-glucosamine","na":44,"nb":2,"a":[["EC%3A1.1.3.29","N-acylhexosamine oxidase"],["EC%3A2.3.1.3","glucosamine N-acetyltransferase"],["EC%3A2.4.1.211","1,3-beta-galactosyl-N-acetylhexosamine phosphorylase"],["EC%3A2.4.1.280","N,N'-diacetylchitobiose phosphorylase"],["EC%3A2.4.1.320","1,4-beta-mannosyl-N-acetylglucosamine phosphorylase"],["EC%3A2.4.1.90","N-acetyllactosamine synthase"]],"b":[["mapped/N-acetyl-d-glucosamine.yaml","N-Acetyl-D-glucosamine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16335","l":"adenosine","na":35,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16335","requires vitamin B12"],["EC%3A1.1.3.39","nucleoside oxidase (H2O2-forming)"],["EC%3A2.7.1.114","AMP--thymidine kinase"],["EC%3A2.7.1.20","adenosine kinase"],["EC%3A3.13.2.1","adenosylhomocysteinase"],["EC%3A3.13.2.3","(R)-S-adenosyl-L-methionine hydrolase (adenosine-forming)"]],"b":[["mapped/Adenosine.yaml","Adenosine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17750","l":"glycine betaine","na":33,"nb":2,"a":[["EC%3A1.1.3.17","choline oxidase"],["EC%3A1.13.11.90","[1-hydroxy-2-(trimethylamino)ethyl]phosphonate dioxygenase (glycine- betaine-forming)"],["EC%3A1.14.13.251","glycine betaine monooxygenase"],["EC%3A1.2.1.8","betaine-aldehyde dehydrogenase"],["EC%3A1.21.4.4","betaine reductase"],["EC%3A2.1.1.157","sarcosine/dimethylglycine N-methyltransferase"]],"b":[["mapped/Betaine_Hydrochloride.yaml","Betaine hydrochloride"],["mapped/Betaine_X_H2o.yaml","Betaine x H2O"]]},{"id":"CHEBI:17596","l":"inosine","na":32,"nb":2,"a":[["EC%3A1.1.3.28","nucleoside oxidase"],["EC%3A2.7.1.73","inosine kinase"],["EC%3A3.1.3.99","IMP-specific 5'-nucleotidase"],["EC%3A3.13.1.9","S-inosyl-L-homocysteine hydrolase"],["EC%3A3.2.2.2","inosine nucleosidase"],["EC%3A3.5.4.4","adenosine deaminase"]],"b":[["mapped/Inosine.yaml","Inosine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17712","l":"9H-xanthine","na":32,"nb":2,"a":[["EC%3A1.14.11.48","xanthine dioxygenase"],["EC%3A1.14.13.128","7-methylxanthine demethylase"],["EC%3A1.14.13.179","methylxanthine N(3)-demethylase"],["EC%3A1.17.1.4","xanthine dehydrogenase"],["EC%3A1.17.3.2","xanthine oxidase"],["EC%3A2.4.2.1","purine-nucleoside phosphorylase"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Xanthine.yaml","Xanthine"]]},{"id":"CHEBI:17368","l":"hypoxanthine","na":28,"nb":2,"a":[["EC%3A1.17.1.4","xanthine dehydrogenase"],["EC%3A1.17.3.2","xanthine oxidase"],["EC%3A2.4.2.44","S-methyl-5'-thioinosine phosphorylase"],["EC%3A2.4.2.8","hypoxanthine phosphoribosyltransferase"],["EC%3A3.2.2.12","inosinate nucleosidase"],["EC%3A3.2.2.2","inosine nucleosidase"]],"b":[["mapped/Hypoxanthine.yaml","Hypoxanthine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16235","l":"guanine","na":27,"nb":2,"a":[["EC%3A2.4.2.1","purine-nucleoside phosphorylase"],["EC%3A2.4.2.15","guanosine phosphorylase"],["EC%3A2.4.2.29","tRNA-guanosine(34) preQ1 transglycosylase"],["EC%3A2.4.2.48","tRNA-guanine(15) transglycosylase"],["EC%3A2.4.2.64","tRNA-guanosine(34) queuine transglycosylase"],["EC%3A2.4.2.8","hypoxanthine phosphoribosyltransferase"]],"b":[["mapped/Guanine.yaml","Guanine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16704","l":"uridine","na":26,"nb":2,"a":[["EC%3A1.14.11.3","pyrimidine-deoxynucleoside 2'-dioxygenase"],["EC%3A2.4.2.2","pyrimidine-nucleoside phosphorylase"],["EC%3A2.4.2.3","uridine phosphorylase"],["EC%3A2.7.1.48","uridine/cytidine kinase"],["EC%3A3.2.2.3","uridine nucleosidase"],["EC%3A3.2.2.8","ribosylpyrimidine nucleosidase"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Uridine.yaml","Uridine"]]},{"id":"CHEBI:17562","l":"cytidine","na":25,"nb":2,"a":[["EC%3A2.7.1.213","cytidine kinase"],["EC%3A2.7.1.48","uridine/cytidine kinase"],["EC%3A3.1.3.91","7-methylguanosine nucleotidase"],["EC%3A3.2.2.8","ribosylpyrimidine nucleosidase"],["EC%3A3.5.1.135","N(4)-acetylcytidine amidohydrolase"],["EC%3A3.5.4.5","cytidine deaminase"]],"b":[["mapped/Cytidine.yaml","Cytidine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:26833","l":"sulfur atom","na":24,"nb":2,"a":[["EC%3A1.12.98.4","sulfhydrogenase"],["EC%3A1.13.11.55","sulfur oxygenase/reductase"],["EC%3A1.8.1.18","NAD(P)H sulfur oxidoreductase (CoA-dependent)"],["EC%3A1.8.1.19","sulfide dehydrogenase"],["EC%3A1.8.2.3","sulfide-cytochrome-c reductase (flavocytochrome c)"],["EC%3A1.8.2.7","thiocyanate desulfurase"]],"b":[["mapped/Sulfur.yaml","Sulfur"],["mapped/Yeast_Extract_Sulfur.yaml","Yeast Extract + Sulfur"]]},{"id":"CHEBI:24996","l":"lactate","na":23,"nb":2,"a":[["EC%3A1.1.1.436","lactate dehydrogenase (NAD(+),ferredoxin)"],["EC%3A3.5.1.124","protein deglycase"],["RHEA%3A57300","an N(2)-(1-hydroxy-2-oxopropyl)-2'-deoxyguanosine in DNA + H2O = a 2'-deoxyguanosine in DNA + lactate + H(+)"],["RHEA%3A57288","an N(2)-(1-hydroxy-2-oxopropyl)-guanosine in RNA + H2O = a guanosine in RNA + lactate + H(+)"],["RHEA%3A46964","lactate + 2 reduced [2Fe-2S]-[ferredoxin] + 2 NAD(+) = 2 oxidized [2Fe-2S]-[ferredoxin] + pyruvate + 2 NADH"],["RHEA%3A57244","N(2)-(1-hydroxy-2-oxopropyl)-dGTP + H2O = lactate + dGTP + H(+)"]],"b":[["mapped/Glucose_Lactate.yaml","Glucose + Lactate"],["mapped/Lactate.yaml","Lactate"]]},{"id":"CHEBI:18391","l":"D-gluconate","na":21,"nb":2,"a":[["EC%3A1.1.1.215","gluconate 2-dehydrogenase"],["EC%3A1.1.1.69","gluconate 5-dehydrogenase"],["EC%3A1.1.99.3","gluconate 2-dehydrogenase (acceptor)"],["EC%3A2.4.1.321","cellobionic acid phosphorylase"],["EC%3A2.7.1.12","gluconokinase"],["EC%3A3.1.1.17","gluconolactonase"]],"b":[["mapped/D-gluconate.yaml","D-gluconate"],["mapped/Yeast_Extract_Gluconate.yaml","Yeast Extract + Gluconate"]]},{"id":"CHEBI:29108","l":"calcium(2+)","na":21,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_29108","requires calcium(2+)"],["EC%3A1.13.12.24","calcium-regulated photoprotein"],["EC%3A7.2.2.10","P-type Ca(2+) transporter"],["RHEA%3A72631","3 Li(+)(out) + Ca(2+)(in) = 3 Li(+)(in) + Ca(2+)(out)"],["RHEA%3A55884","[aequorin] + 3 Ca(2+) = [aequorin]--dioxetanone"],["RHEA%3A55888","[aequorin]--dioxetanone = excited state-[aequorin] + CO2"]],"b":[["mapped/Calcium%282%29.yaml","Calcium(2+)"],["mapped/Calcium.yaml","Calcium"]]},{"id":"CHEBI:17821","l":"thymine","na":20,"nb":2,"a":[["EC%3A1.14.11.6","thymine dioxygenase"],["EC%3A1.14.99.46","pyrimidine monooxygenase"],["EC%3A1.17.99.4","uracil/thymine dehydrogenase"],["EC%3A1.3.1.1","dihydrouracil dehydrogenase (NAD(+))"],["EC%3A1.3.1.2","dihydropyrimidine dehydrogenase (NADP(+))"],["EC%3A2.4.2.2","pyrimidine-nucleoside phosphorylase"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Thymine.yaml","Thymine"]]},{"id":"CHEBI:18420","l":"","na":20,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_18420","requires magnesium(2+)"],["EC%3A4.99.1.10","magnesium dechelatase"],["EC%3A6.6.1.1","magnesium chelatase"],["EC%3A7.2.2.14","P-type Mg(2+) transporter"],["RHEA%3A52788","chlorophyll a + 2 H(+) = pheophytin a + Mg(2+)"],["RHEA%3A52792","chlorophyllide a + 2 H(+) = pheophorbide a + Mg(2+)"]],"b":[["mapped/Magnesium%282%29.yaml","Magnesium(2+)"],["mapped/Magnesium.yaml","Magnesium"]]},{"id":"CHEBI:16750","l":"guanosine","na":19,"nb":2,"a":[["EC%3A2.4.2.1","purine-nucleoside phosphorylase"],["EC%3A2.4.2.15","guanosine phosphorylase"],["EC%3A2.7.1.73","inosine kinase"],["EC%3A3.5.4.15","guanosine deaminase"],["RHEA%3A27862","3'-GMP + H2O = guanosine + phosphate"],["RHEA%3A27714","GMP + H2O = guanosine + phosphate"]],"b":[["mapped/Guanosine.yaml","Guanosine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:18385","l":"thiamine(1+)","na":19,"nb":2,"a":[["EC%3A1.1.3.23","thiamine oxidase"],["EC%3A2.5.1.2","thiamine pyridinylase"],["EC%3A2.7.1.89","thiamine kinase"],["EC%3A2.7.6.2","thiamine diphosphokinase"],["EC%3A3.1.3.100","thiamine phosphate phosphatase"],["EC%3A3.5.99.2","aminopyrimidine aminohydrolase"]],"b":[["mapped/DL_Vitamins.yaml","DL vitamins"],["mapped/Thiamine.yaml","Thiamine"]]},{"id":"CHEBI:16040","l":"cytosine","na":17,"nb":2,"a":[["EC%3A2.4.2.57","AMP phosphorylase"],["EC%3A3.2.2.10","pyrimidine-5'-nucleotide nucleosidase"],["EC%3A3.2.2.8","ribosylpyrimidine nucleosidase"],["EC%3A3.5.1.135","N(4)-acetylcytidine amidohydrolase"],["EC%3A3.5.4.1","cytosine deaminase"],["RHEA%3A30075","CMP + H2O = cytosine + D-ribose 5-phosphate"]],"b":[["mapped/Cytosine.yaml","Cytosine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16899","l":"D-mannitol","na":17,"nb":2,"a":[["EC%3A1.1.1.138","mannitol 2-dehydrogenase (NADP(+))"],["EC%3A1.1.1.255","mannitol dehydrogenase"],["EC%3A1.1.1.67","mannitol 2-dehydrogenase"],["EC%3A1.1.2.2","mannitol dehydrogenase (cytochrome)"],["EC%3A1.1.3.40","D-mannitol oxidase"],["EC%3A2.7.1.197","protein-N(pi)-phosphohistidine--D-mannitol phosphotransferase"]],"b":[["mapped/D-mannitol.yaml","D-Mannitol"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:28885","l":"butan-1-ol","na":16,"nb":2,"a":[["EC%3A1.1.2.9","1-butanol dehydrogenase (cytochrome c)"],["EC%3A1.1.5.11","1-butanol dehydrogenase (quinone)"],["EC%3A1.14.13.230","butane monooxygenase (soluble)"],["RHEA%3A64672","2-(methylsulfanyl)acetyl-CoA + butan-1-ol = butyl 2-(methylsulfanyl)acetate + CoA"],["RHEA%3A64676","3-(methylsulfanyl)propanoyl-CoA + butan-1-ol = butyl 3-(methylsulfanyl)propanoate + CoA"],["RHEA%3A43432","butan-1-ol + 2 Fe(III)-[cytochrome c] = butanal + 2 Fe(II)-[cytochrome c] + 2 H(+)"]],"b":[["mapped/1-butanolCO2.yaml","1-butanol+CO2"],["mapped/Butanol.yaml","Butanol"]]},{"id":"CHEBI:29032","l":"(R)-pantothenate","na":15,"nb":2,"a":[["EC%3A2.7.1.33","pantothenate kinase"],["EC%3A3.5.1.22","pantothenase"],["EC%3A3.5.1.92","pantetheine hydrolase"],["EC%3A6.3.2.1","pantoate--beta-alanine ligase (AMP-forming)"],["EC%3A6.3.2.44","pantoate--beta-alanine ligase (ADP-forming)"],["RHEA%3A68332","(R)-4'-phosphopantothenate + H2O = (R)-pantothenate + phosphate"]],"b":[["mapped/Ca-pantothenate.yaml","Ca-pantothenate"],["mapped/Calcium_Pantothenate.yaml","Calcium pantothenate"]]},{"id":"CHEBI:17256","l":"","na":13,"nb":2,"a":[["EC%3A2.7.1.76","deoxyadenosine kinase"],["EC%3A3.5.4.4","adenosine deaminase"],["RHEA%3A23452","2'-deoxyadenosine + ATP = dAMP + ADP + H(+)"],["RHEA%3A28190","2'-deoxyadenosine + H2O + H(+) = 2'-deoxyinosine + NH4(+)"],["RHEA%3A75691","2'-deoxyadenosine(in) = 2'-deoxyadenosine(out)"],["RHEA%3A29979","2'-deoxyadenosine(in) + H(+)(in) = 2'-deoxyadenosine(out) + H(+)(out)"]],"b":[["mapped/2-Deoxyadenosine_Monohydrate.yaml","2-Deoxyadenosine monohydrate"],["mapped/2-deoxyadenosine.yaml","2-deoxyadenosine"]]},{"id":"CHEBI:29987","l":"","na":13,"nb":2,"a":[["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.23","The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family"],["TCDB%3A2.A.47","The Divalent Anion:Na+ Symporter (DASS) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A1.A.24","The Gap Junction-forming Connexin (Connexin) Family"]],"b":[["mapped/Aspartate.yaml","Aspartate"],["mapped/Glutamate.yaml","Glutamate"]]},{"id":"CHEBI:25107","l":"''magnesium atom''","na":11,"nb":2,"a":[["proteintraitsmech%3AMETALPDB_MG_DECANUCLEAR","decanuclear magnesium site"],["proteintraitsmech%3AMETALPDB_MG_DINUCLEAR","dinuclear magnesium site"],["proteintraitsmech%3AMETALPDB_MG_HEPTANUCLEAR","heptanuclear magnesium site"],["proteintraitsmech%3AMETALPDB_MG_HEXANUCLEAR","hexanuclear magnesium site"],["proteintraitsmech%3AMETALPDB_MG_MONONUCLEAR","mononuclear magnesium site"],["proteintraitsmech%3AMETALPDB_MG_MULTINUCLEAR","multinuclear magnesium site"]],"b":[["mapped/Magnesium%282%29.yaml","Magnesium(2+)"],["mapped/Magnesium.yaml","Magnesium"]]},{"id":"CHEBI:22984","l":"''calcium atom''","na":10,"nb":2,"a":[["TCDB%3A1.A.10","The Glutamate-gated Ion Channel (GIC) Family of Neurotransmitter Receptors"],["TCDB%3A1.A.77","The Mg2+/Ca2+ Uniporter (MCU) Family"],["proteintraitsmech%3AMETALPDB_CA_DINUCLEAR","dinuclear calcium site"],["proteintraitsmech%3AMETALPDB_CA_HEPTANUCLEAR","heptanuclear calcium site"],["proteintraitsmech%3AMETALPDB_CA_HEXANUCLEAR","hexanuclear calcium site"],["proteintraitsmech%3AMETALPDB_CA_MONONUCLEAR","mononuclear calcium site"]],"b":[["mapped/Calcium%282%29.yaml","Calcium(2+)"],["mapped/Calcium.yaml","Calcium"]]},{"id":"CHEBI:30924","l":"","na":10,"nb":2,"a":[["EC%3A1.1.1.93","tartrate dehydrogenase"],["EC%3A4.1.1.73","tartrate decarboxylase"],["EC%3A4.2.1.32","L(+)-tartrate dehydratase"],["EC%3A5.1.2.5","tartrate epimerase"],["RHEA%3A22212","(2R,3R)-tartrate = (2R,3S)-tartrate"],["RHEA%3A13317","(2R,3R)-tartrate + H(+) = (R)-glycerate + CO2"]],"b":[["mapped/Na-tartrate.yaml","Na-tartrate"],["mapped/Sodium_Tartrate.yaml","Sodium tartrate"]]},{"id":"CHEBI:18107","l":"xanthosine","na":9,"nb":2,"a":[["EC%3A2.1.1.158","7-methylxanthosine synthase"],["EC%3A2.4.2.1","purine-nucleoside phosphorylase"],["EC%3A3.5.4.15","guanosine deaminase"],["RHEA%3A12861","guanosine + H2O + H(+) = xanthosine + NH4(+)"],["RHEA%3A27994","xanthosine + H2O = D-ribose + xanthine"],["RHEA%3A28939","xanthosine(in) + H(+)(in) = xanthosine(out) + H(+)(out)"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Xanthosine.yaml","Xanthosine"]]},{"id":"CHEBI:10642","l":"","na":8,"nb":2,"a":[["EC%3A1.1.1.370","scyllo-inositol 2-dehydrogenase (NAD(+))"],["EC%3A1.1.1.371","scyllo-inositol 2-dehydrogenase (NADP(+))"],["RHEA%3A82131","scyllo-inositol 1-phosphate + H2O = scyllo-inositol + phosphate"],["RHEA%3A17613","scyllo-inositol + NAD(+) = scyllo-inosose + NADH + H(+)"],["RHEA%3A39063","scyllo-inositol + NADP(+) = scyllo-inosose + NADPH + H(+)"],["RHEA%3A72991","scyllo-inositol(out) + 2 Na(+)(out) = scyllo-inositol(in) + 2 Na(+)(in)"]],"b":[["mapped/M-inositol.yaml","m-Inositol"],["mapped/Myo-inositol.yaml","myo-Inositol"]]},{"id":"CHEBI:35195","l":"surfactant","na":2,"nb":8,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A1.A.16","The Formate-Nitrite Transporter (FNT) Family"]],"b":[["mapped/Benzalkonium_Chloride.yaml","Benzalkonium Chloride"],["mapped/Cetrimonium_Bromide.yaml","Cetrimonium bromide"],["mapped/Na-laurate.yaml","Na-laurate"],["mapped/Na-stearate.yaml","Na-stearate"],["mapped/Rhamnolipid.yaml","Rhamnolipid"],["mapped/Sodium_Dodecyl_Sulfate.yaml","Sodium Dodecyl Sulfate"]]},{"id":"CHEBI:4735","l":"ethylenediaminetetraacetic acid","na":2,"nb":8,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["proteintraitsmech%3ABIOLIP_EDT","EDT-binding site"]],"b":[["mapped/ATCC_Wolfes_Mineral_Mix.yaml","ATCC Wolfe's mineral mix"],["mapped/EDTA_Tetrasodium_Tetrahydrate_Salt.yaml","EDTA tetrasodium tetrahydrate salt"],["mapped/Edta.yaml","EDTA"],["mapped/Edta_Acid_Form.yaml","EDTA (acid form)"],["mapped/UW_Concentrated_Base.yaml","UW concentrated base"],["mapped/UW_Concentrated_Base_No_Mo.yaml","UW concentrated base no Mo"]]},{"id":"CHEBI:9532","l":"thiamine(1+) diphosphate","na":8,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_9532","requires thiamine(1+) diphosphate"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/02_Thiamine_Pyrophosphate.yaml","0.2% Thiamine pyrophosphate"],["mapped/Thiamine_pyrophosphate.yaml","Thiamine pyrophosphate"]]},{"id":"CHEBI:15940","l":"nicotinic acid","na":2,"nb":7,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_15940","requires nicotinic acid"],["proteintraitsmech%3ABIOLIP_NIO","NIO-binding site"]],"b":[["mapped/ATCC_Wolfes_Vitamin_Mix.yaml","ATCC Wolfe's vitamin mix"],["mapped/DL_Vitamins.yaml","DL vitamins"],["mapped/Mc_vitamins.yaml","Mc_vitamins"],["mapped/Nicotinic_Acid.yaml","Nicotinic acid"],["mapped/Thauers_Vitamin_Mix.yaml","Thauer's vitamin mix"],["mapped/Thauers_Vitamin_Mix_No_Biotin.yaml","Thauer's vitamin mix no Biotin"]]},{"id":"CHEBI:17824","l":"propan-2-ol","na":7,"nb":2,"a":[["EC%3A1.1.1.80","isopropanol dehydrogenase (NADP(+))"],["EC%3A1.14.13.227","propane 2-monooxygenase"],["RHEA%3A62196","propan-2-ol + 2 Fe(III)-[cytochrome c] = acetone + 2 Fe(II)-[cytochrome c] + 2 H(+)"],["RHEA%3A41984","propan-2-ol + NAD(+) = acetone + NADH + H(+)"],["RHEA%3A21792","propan-2-ol + NADP(+) = acetone + NADPH + H(+)"],["RHEA%3A49992","propane + NADH + O2 + H(+) = propan-2-ol + NAD(+) + H2O"]],"b":[["mapped/2-propanolCO2.yaml","2-propanol+CO2"],["mapped/Isopropyl_Alcohol.yaml","Isopropyl alcohol"]]},{"id":"CHEBI:28831","l":"","na":7,"nb":2,"a":[["RHEA%3A62204","1-propanol + 2 Fe(III)-[cytochrome c] = propanal + 2 Fe(II)-[cytochrome c] + 2 H(+)"],["RHEA%3A65468","1-propanol + acetyl-CoA = propyl acetate + CoA"],["RHEA%3A65476","1-propanol + butanoyl-CoA = propyl butanoate + CoA"],["RHEA%3A50704","1-propanol + NAD(+) = propanal + NADH + H(+)"],["RHEA%3A64712","1-propanol + NADP(+) = propanal + NADPH + H(+)"],["MCSA%3A407","carboxylesterase"]],"b":[["mapped/1-propanolCO2.yaml","1-propanol+CO2"],["mapped/Propan-1-ol.yaml","Propan-1-ol"]]},{"id":"CHEBI:30753","l":"4-aminobenzoic acid","na":2,"nb":7,"a":[["TCDB%3A2.A.71","The Folate-Biopterin Transporter (FBT) Family"],["proteintraitsmech%3ABIOLIP_PAB","PAB-binding site"]],"b":[["mapped/ATCC_Wolfes_Vitamin_Mix.yaml","ATCC Wolfe's vitamin mix"],["mapped/DL_Vitamins.yaml","DL vitamins"],["mapped/Mc_vitamins.yaml","Mc_vitamins"],["mapped/P-aminobenzoic_Acid.yaml","p-Aminobenzoic acid"],["mapped/Thauers_Vitamin_Mix.yaml","Thauer's vitamin mix"],["mapped/Thauers_Vitamin_Mix_No_Biotin.yaml","Thauer's vitamin mix no Biotin"]]},{"id":"CHEBI:15956","l":"biotin","na":2,"nb":6,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_15956","requires biotin"],["proteintraitsmech%3ABIOLIP_BTN","BTN-binding site"]],"b":[["mapped/ATCC_Wolfes_Vitamin_Mix.yaml","ATCC Wolfe's vitamin mix"],["mapped/Biotin.yaml","Biotin"],["mapped/DL_Vitamins.yaml","DL vitamins"],["mapped/Mc_vitamins.yaml","Mc_vitamins"],["mapped/Thauers_Vitamin_Mix.yaml","Thauer's vitamin mix"],["mapped/Wolfes_Vitamin_Mix.yaml","Wolfe's vitamin mix"]]},{"id":"CHEBI:18394","l":"6-O-alpha-D-glucopyranosyl-D-fructofuranose","na":6,"nb":2,"a":[["EC%3A3.2.1.219","palatinase"],["EC%3A5.4.99.11","isomaltulose synthase"],["RHEA%3A68808","6-O-alpha-D-glucopyranosyl-D-fructose + H2O = alpha-D-glucose + D-fructose"],["RHEA%3A24032","sucrose = 6-O-alpha-D-glucopyranosyl-D-fructose"],["TCDB%3A4.A.1","The PTS Glucose-Glucoside (Glc) Family"],["MCSA%3A582","isomaltulose synthase"]],"b":[["mapped/Palatinose.yaml","Palatinose"],["mapped/Palatinose_Hydrate.yaml","palatinose hydrate"]]},{"id":"CHEBI:28645","l":"beta-D-fructofuranose","na":6,"nb":2,"a":[["EC%3A2.7.1.3","ketohexokinase"],["EC%3A3.2.1.48","sucrose alpha-glucosidase"],["RHEA%3A18145","beta-D-fructose + ATP = beta-D-fructose 1-phosphate + ADP + H(+)"],["RHEA%3A33791","sucrose 6(F)-phosphate + H2O = beta-D-fructose + beta-D-glucose 6-phosphate"],["RHEA%3A33795","sucrose + H2O = beta-D-fructose + alpha-D-glucose"],["proteintraitsmech%3ABIOLIP_FRU","FRU-binding site"]],"b":[["mapped/Fructooligosaccharides_Fos.yaml","Fructooligosaccharides (FOS)"],["mapped/Fructose.yaml","Fructose"]]},{"id":"CHEBI:16856","l":"glutathione","na":4,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16856","requires glutathione"],["MCSA%3A359","lactoglutathione lyase"],["MCSA%3A32","lactoylglutathione lyase"],["proteintraitsmech%3ABIOLIP_GSH","GSH-binding site"]],"b":[["mapped/Glutathione.yaml","Glutathione"],["mapped/L-Glutathione.yaml","L-Glutathione"]]},{"id":"CHEBI:17895","l":"L-tyrosine","na":2,"nb":4,"a":[["MCSA%3A638","neurolysin"],["proteintraitsmech%3ABIOLIP_TYR","TYR-binding site"]],"b":[["mapped/DL-Tyrosine.yaml","DL-Tyrosine"],["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-tyrosine.yaml","L-Tyrosine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:24265","l":"","na":4,"nb":2,"a":[["TCDB%3A2.A.49","The Chloride Carrier/Channel (ClC) Family"],["TCDB%3A2.A.8","The Gluconate:H+ Symporter (GntP) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A4.A.6","The PTS Mannose-Fructose-Sorbose (Man) Family"]],"b":[["mapped/Gluconate.yaml","Gluconate"],["mapped/Yeast_Extract_Gluconate.yaml","Yeast Extract + Gluconate"]]},{"id":"CHEBI:28869","l":"menadione","na":4,"nb":2,"a":[["RHEA%3A35611","menadiol + 2 O2 = menadione + 2 superoxide + 2 H(+)"],["RHEA%3A69695","menadione + NADH + H(+) = menadiol + NAD(+)"],["RHEA%3A63492","menadione + NADPH + H(+) = menadiol + NADP(+)"],["proteintraitsmech%3ABIOLIP_VK3","VK3-binding site"]],"b":[["mapped/Menadione.yaml","Menadione"],["mapped/Menadione_Solution.yaml","Menadione solution"]]},{"id":"CHEBI:3508","l":"ceftazidime","na":4,"nb":2,"a":[["TCDB%3A8.A.213","The Bon Domain-containing Protein (Bon DP) Family"],["TCDB%3A1.B.1","The General Bacterial Porin (GBP) Family"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"],["TCDB%3A2.C.1","The TonB-ExbB-ExbD/TolA-TolQ-TolR Outer Membrane Receptor Energizers and Stabilizers (TonB/TolA) Family"]],"b":[["mapped/Ceftazidime.yaml","Ceftazidime"],["mapped/Ceftazidime_Hydrate.yaml","Ceftazidime hydrate"]]},{"id":"CHEBI:36361","l":"phosphorous acid","na":4,"nb":2,"a":[["EC%3A1.20.1.1","phosphite dehydrogenase"],["RHEA%3A86123","phosphite + AMP + NAD(+) = ADP + NADH + 2 H(+)"],["RHEA%3A13173","phosphite + NAD(+) + H2O = phosphate + NADH + 3 H(+)"],["RHEA%3A48972","phosphite(out) + ATP + H2O = phosphite(in) + ADP + phosphate + H(+)"]],"b":[["mapped/Phosphorous_Acid.yaml","phosphorous acid"],["mapped/Sodium_Phosphite_Dibasic_Pentahydrate.yaml","Sodium phosphite dibasic pentahydrate"]]},{"id":"CHEBI:46020","l":"tetramethylammonium","na":2,"nb":4,"a":[["EC%3A2.1.1.252","tetramethylammonium--corrinoid protein Co-methyltransferase"],["RHEA%3A59856","tetramethylammonium + Co(I)-[tetramethylammonium-specific corrinoid protein] + H(+) = methyl-Co(III)-[tetramethylammonium-specific corrinoid protein] + trimethylamine"]],"b":[["mapped/Formatetetramethylammonium.yaml","Formate+tetramethylammonium"],["mapped/H2tetramethylammonium.yaml","H2+tetramethylammonium"],["mapped/Tetramethyl_Ammonium.yaml","Tetramethyl ammonium"],["mapped/Tetramethyl_Ammonium_Chloride.yaml","Tetramethyl ammonium chloride"]]},{"id":"CHEBI:16414","l":"L-valine","na":2,"nb":3,"a":[["MCSA%3A798","t-plasminogen activator"],["proteintraitsmech%3ABIOLIP_VAL","VAL-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-valine.yaml","L-Valine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17164","l":"stachyose","na":3,"nb":2,"a":[["EC%3A2.4.1.67","galactinol--raffinose galactosyltransferase"],["RHEA%3A20776","alpha-D-galactosyl-(1->3)-1D-myo-inositol + raffinose = stachyose + myo-inositol"],["RHEA%3A70279","stachyose + H2O = raffinose + D-galactose"]],"b":[["mapped/Stachyose_-_70.yaml","Stachyose - 70%"],["mapped/Stachyose_Hydrate.yaml","Stachyose hydrate"]]},{"id":"CHEBI:17196","l":"L-asparagine","na":2,"nb":3,"a":[["MCSA%3A596","deuterolysin"],["proteintraitsmech%3ABIOLIP_ASN","ASN-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-asparagine.yaml","L-Asparagine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:18237","l":"glutamic acid","na":3,"nb":2,"a":[["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"]],"b":[["mapped/4_Carbon_Mix.yaml","4 Carbon Mix"],["mapped/Glutamic_Acid.yaml","Glutamic acid"]]},{"id":"CHEBI:27789","l":"1,2-dichloroethane","na":3,"nb":2,"a":[["EC%3A3.8.1.5","haloalkane dehalogenase"],["RHEA%3A25185","1,2-dichloroethane + H2O = 2-chloroethanol + chloride + H(+)"],["proteintraitsmech%3ABIOLIP_DCE","DCE-binding site"]],"b":[["mapped/2-dichloroethane.yaml","1,2-dichloroethane"],["mapped/backups/2-dichloroethane_20260807_213601.yaml","2-dichloroethane"]]},{"id":"CHEBI:30314","l":"(R)-lipoic acid","na":2,"nb":3,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_30314","requires (R)-lipoic acid"],["proteintraitsmech%3ABIOLIP_LPA","LPA-binding site"]],"b":[["mapped/ATCC_Wolfes_Vitamin_Mix.yaml","ATCC Wolfe's vitamin mix"],["mapped/Thioctic_Acid.yaml","Thioctic acid"],["mapped/Wolfes_Vitamin_Mix.yaml","Wolfe's vitamin mix"]]},{"id":"CHEBI:15729","l":"L-ornithine","na":2,"nb":2,"a":[["MCSA%3A12","ornithine carbamoyltransferase"],["proteintraitsmech%3ABIOLIP_ORN","ORN-binding site"]],"b":[["mapped/L-ornithine.yaml","L-Ornithine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:15741","l":"succinic acid","na":2,"nb":2,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["proteintraitsmech%3ABIOLIP_SIN","SIN-binding site"]],"b":[["mapped/Sodium_Succinate_Dibasic.yaml","Sodium succinate dibasic"],["mapped/Succinic_Acid.yaml","Succinic acid"]]},{"id":"CHEBI:16789","l":"aldehydo-D-lyxose","na":2,"nb":2,"a":[["EC%3A5.3.1.15","D-lyxose ketol-isomerase"],["RHEA%3A14201","D-lyxose = D-xylulose"]],"b":[["mapped/%282%29-D-lyxose.yaml","D-lyxose"],["mapped/D-_-lyxose.yaml","D-(-)-lyxose"]]},{"id":"CHEBI:17883","l":"hydrogen chloride","na":2,"nb":2,"a":[["MCSA%3A24","4-chlorobenzoyl-CoA dehalogenase"],["MCSA%3A348","chloromuconate cycloisomerase"]],"b":[["mapped/Hcl.yaml","HCl"],["mapped/Trace_Element_Solution_SL-10.yaml","Trace element solution SL-10"]]},{"id":"CHEBI:17909","l":"polysulfur","na":2,"nb":2,"a":[["EC%3A1.8.5.4","bacterial sulfide:quinone reductase"],["RHEA%3A30239","n a quinone + n hydrogen sulfide + n H(+) = polysulfur(n-2) + n a quinol"]],"b":[["mapped/Sulfur_Powder.yaml","Sulfur (powder)"],["mapped/Sulphur.yaml","Sulphur"]]},{"id":"CHEBI:28757","l":"fructose","na":2,"nb":2,"a":[["GO%3A0070061","fructose binding"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"]],"b":[["mapped/Fructose.yaml","Fructose"],["mapped/PY-fructose.yaml","PY-fructose"]]},{"id":"CHEBI:33697","l":"ribonucleic acid","na":2,"nb":2,"a":[["TCDB%3A1.A.79","The Cholesterol Uptake Protein (ChUP) or Double Stranded RNA Uptake Family"],["proteintraitsmech%3ABIOLIP_RNA","RNA-binding site"]],"b":[["mapped/Ribonucleic_Acid_From_Torula_Yeast_Type_VI.yaml","Ribonucleic acid from torula yeast type VI"],["mapped/Rna.yaml","Rna"]]},{"id":"CHEBI:42758","l":"'aldehydo-D-glucose'","na":2,"nb":2,"a":[["RHEA%3A15665","aldehydo-D-glucose + L-lysyl-[protein] = N(6)-(D-fructosyl)-L-lysyl-[protein] + H2O"],["proteintraitsmech%3ABIOLIP_GLO","GLO-binding site"]],"b":[["mapped/Glucose.yaml","Glucose"],["mapped/Glucose_2.yaml","glucose"]]},{"id":"CHEBI:4853","l":"'esculin'","na":2,"nb":2,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A1.V.1","The Filamentous Cyanobacterial Septal Pore (Septum) Family"]],"b":[["mapped/Esculin_Ferric_Citrate.yaml","Esculin Ferric Citrate"],["mapped/Esculin_Monohydrate.yaml","Esculin Monohydrate"]]},{"id":"CHEBI:15379","l":"dioxygen","na":3896,"nb":1,"a":[["EC%3A1.1.3.10","pyranose oxidase"],["EC%3A1.1.3.11","L-sorbose oxidase"],["EC%3A1.1.3.12","pyridoxine 4-oxidase"],["EC%3A1.1.3.13","alcohol oxidase"],["EC%3A1.1.3.14","catechol oxidase (dimerizing)"],["EC%3A1.1.3.15","(S)-2-hydroxy-acid oxidase"]],"b":[["mapped/Dioxygen.yaml","Dioxygen"]]},{"id":"CHEBI:28938","l":"ammonium","na":837,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_28938","requires ammonium"],["EC%3A1.13.12.15","3,4-dihydroxyphenylalanine oxidative deaminase"],["EC%3A1.13.99.3","tryptophan 2'-dioxygenase"],["EC%3A1.14.11.37","kanamycin B dioxygenase"],["EC%3A1.14.12.1","anthranilate 1,2-dioxygenase (deaminating, decarboxylating)"],["EC%3A1.14.12.14","2-aminobenzenesulfonate 2,3-dioxygenase"]],"b":[["mapped/Ammonium.yaml","Ammonium"]]},{"id":"CHEBI:16240","l":"hydrogen peroxide","na":680,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16240","requires hydrogen peroxide"],["EC%3A1.1.3.10","pyranose oxidase"],["EC%3A1.1.3.11","L-sorbose oxidase"],["EC%3A1.1.3.12","pyridoxine 4-oxidase"],["EC%3A1.1.3.13","alcohol oxidase"],["EC%3A1.1.3.15","(S)-2-hydroxy-acid oxidase"]],"b":[["mapped/Hydrogen_Peroxide.yaml","Hydrogen peroxide"]]},{"id":"CHEBI:16810","l":"2-oxoglutarate(2-)","na":672,"nb":1,"a":[["EC%3A1.1.1.286","isocitrate--homoisocitrate dehydrogenase"],["EC%3A1.1.1.399","2-oxoglutarate reductase"],["EC%3A1.1.1.41","isocitrate dehydrogenase (NAD(+))"],["EC%3A1.1.1.42","isocitrate dehydrogenase (NADP(+))"],["EC%3A1.1.5.13","(S)-2-hydroxyglutarate dehydrogenase"],["EC%3A1.1.99.2","L-2-hydroxyglutarate dehydrogenase"]],"b":[["mapped/Na2_Alpha-ketoglutarate.yaml","Na2 alpha-ketoglutarate"]]},{"id":"CHEBI:15361","l":"pyruvate","na":410,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_15361","requires pyruvate"],["EC%3A1.1.1.27","L-lactate dehydrogenase"],["EC%3A1.1.1.28","D-lactate dehydrogenase"],["EC%3A1.1.1.38","malate dehydrogenase (oxaloacetate-decarboxylating)"],["EC%3A1.1.1.39","malate dehydrogenase (decarboxylating)"],["EC%3A1.1.1.40","malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))"]],"b":[["mapped/Pyruvate.yaml","Pyruvate"]]},{"id":"CHEBI:29033","l":"iron(2+)","na":396,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_29033","requires iron(2+)"],["EC%3A1.1.2.10","lanthanide-dependent methanol dehydrogenase"],["EC%3A1.1.2.11","glucoside 3-dehydrogenase (cytochrome c)"],["EC%3A1.1.2.2","mannitol dehydrogenase (cytochrome)"],["EC%3A1.1.2.3","L-lactate dehydrogenase (cytochrome)"],["EC%3A1.1.2.4","D-lactate dehydrogenase (cytochrome)"]],"b":[["mapped/Ferrous_Ion.yaml","Ferrous Ion"]]},{"id":"CHEBI:29101","l":"sodium(1+)","na":292,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_29101","requires sodium(1+)"],["EC%3A7.2.1.1","NADH:ubiquinone reductase (Na(+)-transporting)"],["EC%3A7.2.1.2","ferredoxin--NAD(+) oxidoreductase (Na(+)-transporting)"],["EC%3A7.2.1.4","tetrahydromethanopterin S-methyltransferase"],["EC%3A7.2.2.1","Na(+)-transporting two-sector ATPase"],["EC%3A7.2.2.13","Na(+)/K(+)-exchanging ATPase"]],"b":[["mapped/Sodium%28%29.yaml","Sodium(+)"]]},{"id":"CHEBI:16842","l":"formaldehyde","na":212,"nb":1,"a":[["EC%3A1.1.1.244","methanol dehydrogenase"],["EC%3A1.1.2.10","lanthanide-dependent methanol dehydrogenase"],["EC%3A1.1.2.7","methanol dehydrogenase (cytochrome c)"],["EC%3A1.1.99.37","methanol dehydrogenase (nicotinoprotein)"],["EC%3A1.13.11.94","4-vinylguaiacol dioxygenase"],["EC%3A1.14.11.27","[histone H3]-dimethyl-L-lysine(36) demethylase"]],"b":[["mapped/Formaldehyde.yaml","Formaldehyde"]]},{"id":"CHEBI:17996","l":"chloride","na":196,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_17996","requires chloride"],["EC%3A1.11.2.2","myeloperoxidase"],["EC%3A1.13.11.49","chlorite O2-lyase"],["EC%3A1.14.12.13","2-halobenzoate 1,2-dioxygenase"],["EC%3A1.14.12.9","4-chlorophenylacetate 3,4-dioxygenase"],["EC%3A1.14.13.50","pentachlorophenol monooxygenase"]],"b":[["mapped/Cl.yaml","Cl-"]]},{"id":"CHEBI:16189","l":"sulfate","na":133,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16189","requires sulfate"],["EC%3A1.14.11.77","alkyl sulfatase"],["EC%3A1.8.2.1","sulfite dehydrogenase (cytochrome)"],["EC%3A1.8.3.1","sulfite oxidase"],["EC%3A1.8.5.6","sulfite dehydrogenase (quinone)"],["EC%3A2.7.7.4","sulfate adenylyltransferase"]],"b":[["mapped/Sulfate.yaml","Sulfate"]]},{"id":"CHEBI:36655","l":"","na":132,"nb":1,"a":[["EC%3A1.1.1.26","glyoxylate reductase"],["EC%3A1.1.1.79","glyoxylate reductase (NADP(+))"],["EC%3A1.1.3.15","(S)-2-hydroxy-acid oxidase"],["EC%3A1.1.99.14","glycolate dehydrogenase"],["EC%3A1.14.14.10","nitrilotriacetate monooxygenase"],["EC%3A1.14.14.33","ethylenediaminetetraacetate monooxygenase"]],"b":[["mapped/Glyoxylate.yaml","Glyoxylate"]]},{"id":"CHEBI:29991","l":"","na":130,"nb":1,"a":[["EC%3A1.14.13.248","L-aspartate N-monooxygenase (nitrosuccinate-forming)"],["EC%3A1.4.1.21","aspartate dehydrogenase"],["EC%3A1.4.1.29","iminosuccinate reductase"],["EC%3A1.4.3.16","L-aspartate oxidase"],["EC%3A2.1.3.2","aspartate carbamoyltransferase"],["EC%3A2.3.1.17","aspartate N-acetyltransferase"]],"b":[["mapped/L-aspartate.yaml","L-aspartate"]]},{"id":"CHEBI:16301","l":"nitrite","na":116,"nb":1,"a":[["EC%3A1.13.11.64","5-nitrosalicylate dioxygenase"],["EC%3A1.13.12.16","nitronate monooxygenase"],["EC%3A1.14.12.23","nitroarene dioxygenase"],["EC%3A1.14.12.24","2,4-dinitrotoluene dioxygenase"],["EC%3A1.14.13.166","4-nitrocatechol 4-monooxygenase"],["EC%3A1.14.13.167","4-nitrophenol 4-monooxygenase"]],"b":[["mapped/Nitrite.yaml","Nitrite"]]},{"id":"CHEBI:17359","l":"sulfite","na":109,"nb":1,"a":[["EC%3A1.13.11.18","persulfide dioxygenase"],["EC%3A1.13.11.55","sulfur oxygenase/reductase"],["EC%3A1.14.11.17","taurine dioxygenase"],["EC%3A1.14.12.8","4-sulfobenzoate 3,4-dioxygenase"],["EC%3A1.14.13.111","methanesulfonate monooxygenase (NADH)"],["EC%3A1.14.14.181","sulfoquinovose monooxygenase"]],"b":[["mapped/Sulfite.yaml","Sulfite"]]},{"id":"CHEBI:35235","l":"L-cysteine zwitterion","na":108,"nb":1,"a":[["EC%3A1.13.11.20","cysteine dioxygenase"],["EC%3A1.13.11.95","2-oxoethane-1-sulfonamide synthase"],["EC%3A1.14.99.52","L-cysteinyl-L-histidinylsulfoxide synthase"],["EC%3A1.21.3.10","hercynylcysteine S-oxide synthase"],["EC%3A1.8.1.6","cystine reductase"],["EC%3A1.8.3.5","prenylcysteine oxidase"]],"b":[["mapped/L-cysteine_Zwitterion.yaml","L-cysteine zwitterion"]]},{"id":"CHEBI:7896","l":"","na":106,"nb":1,"a":[["EC%3A1.11.1.3","fatty-acid peroxidase"],["EC%3A1.13.11.92","fatty acid alpha-dioxygenase"],["EC%3A1.14.14.80","long-chain fatty acid omega-monooxygenase"],["EC%3A3.1.1.63","11-cis-retinyl-palmitate hydrolase"],["EC%3A3.1.1.64","retinoid isomerohydrolase"],["EC%3A3.1.2.14","oleoyl-[acyl-carrier-protein] hydrolase"]],"b":[["mapped/Hexadecanoate.yaml","Hexadecanoate"]]},{"id":"CHEBI:57912","l":"L-tryptophan 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dehydrogenase (quinone)"],["EC%3A1.1.99.36","alcohol dehydrogenase (nicotinoprotein)"],["EC%3A1.13.11.88","isoeugenol monooxygenase"],["EC%3A1.13.12.16","nitronate monooxygenase"],["EC%3A1.2.1.10","acetaldehyde dehydrogenase (acetylating)"]],"b":[["mapped/Acetaldehyde.yaml","acetaldehyde"]]},{"id":"CHEBI:16646","l":"carbohydrate","na":1,"nb":80,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16646","requires pantothenate"]],"b":[["mapped/1-Kestose.yaml","1-Kestose"],["mapped/2-Deoxy-D-Ribose.yaml","2-Deoxy-D-Ribose"],["mapped/2-Deoxy-D-glucose.yaml","2-Deoxy-D-glucose"],["mapped/2-fucosyllactose.yaml","2'-fucosyllactose"],["mapped/A-Cyclodextrin.yaml","a-Cyclodextrin"],["mapped/Agarose.yaml","Agarose"]]},{"id":"CHEBI:29806","l":"fumarate(2-)","na":76,"nb":1,"a":[["EC%3A1.3.1.6","fumarate reductase (NADH)"],["EC%3A1.3.2.4","fumarate reductase (cytochrome)"],["EC%3A1.3.4.1","fumarate reductase (CoM/CoB)"],["EC%3A1.3.5.1","succinate dehydrogenase"],["EC%3A1.3.98.1","dihydroorotate oxidase (fumarate)"],["EC%3A3.7.1.14","2-hydroxy-6-oxonona-2,4-dienedioate hydrolase"]],"b":[["mapped/Fumarate.yaml","Fumarate"]]},{"id":"CHEBI:17509","l":"","na":64,"nb":1,"a":[["EC%3A2.3.1.184","acyl-homoserine-lactone synthase"],["EC%3A2.3.1.228","isovaleryl-homoserine lactone synthase"],["EC%3A2.3.1.229","4-coumaroyl-homoserine lactone synthase"],["EC%3A2.4.2.28","S-methyl-5'-thioadenosine phosphorylase"],["EC%3A2.5.1.104","N(1)-aminopropylagmatine synthase"],["EC%3A2.5.1.108","2-(3-amino-3-carboxypropyl)histidine synthase"]],"b":[["mapped/5-deoxy-5-_Methylthioadenosine.yaml","5'-Deoxy-5'-(methylthio)adenosine"]]},{"id":"CHEBI:15903","l":"","na":59,"nb":1,"a":[["EC%3A1.1.3.4","glucose oxidase"],["EC%3A1.1.3.5","hexose oxidase"],["EC%3A2.3.1.152","alcohol O-cinnamoyltransferase"],["EC%3A2.3.1.213","cyanidin 3-O-(6-O-glucosyl-2-O-xylosylgalactoside) 6''-O- hydroxycinnamoyltransferase"],["EC%3A3.2.1.106","mannosyl-oligosaccharide glucosidase"],["EC%3A3.2.1.175","beta-D-glucopyranosyl abscisate beta-glucosidase"]],"b":[["mapped/Beta-d-glucose.yaml","Beta-D-glucose"]]},{"id":"CHEBI:16347","l":"","na":59,"nb":1,"a":[["EC%3A1.14.13.239","carnitine monooxygenase"],["EC%3A2.1.1.383","L-carnitine--corrinoid protein Co-methyltransferase"],["EC%3A2.3.1.137","carnitine O-octanoyltransferase"],["EC%3A2.3.1.21","carnitine O-palmitoyltransferase"],["EC%3A2.3.1.7","carnitine O-acetyltransferase"],["EC%3A2.8.3.21","L-carnitine CoA-transferase"]],"b":[["mapped/L-Carnitine.yaml","L-Carnitine"]]},{"id":"CHEBI:17879","l":"4-hydroxybenzoate","na":57,"nb":1,"a":[["EC%3A1.13.11.41","2,4'-dihydroxyacetophenone dioxygenase"],["EC%3A1.14.13.2","4-hydroxybenzoate 3-monooxygenase"],["EC%3A1.14.13.33","4-hydroxybenzoate 3-monooxygenase [NAD(P)H]"],["EC%3A1.14.13.64","4-hydroxybenzoate 1-hydroxylase"],["EC%3A1.14.14.92","benzoate 4-monooxygenase"],["EC%3A1.14.19.55","4-hydroxybenzoate brominase (decarboxylating)"]],"b":[["mapped/P-hydroxybenzoate.yaml","p-Hydroxybenzoate"]]},{"id":"CHEBI:15589","l":"(S)-malate(2-)","na":56,"nb":1,"a":[["EC%3A1.1.1.299","malate dehydrogenase [NAD(P)(+)]"],["EC%3A1.1.1.37","(S)-malate dehydrogenase (NAD(+), oxaloacetate-forming)"],["EC%3A1.1.1.38","malate dehydrogenase (oxaloacetate-decarboxylating)"],["EC%3A1.1.1.39","malate dehydrogenase (decarboxylating)"],["EC%3A1.1.1.40","malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))"],["EC%3A1.1.1.82","malate dehydrogenase (NADP(+))"]],"b":[["mapped/L-malate.yaml","L-malate"]]},{"id":"CHEBI:16947","l":"citrate(3-)","na":49,"nb":1,"a":[["EC%3A2.3.3.1","citrate (Si)-synthase"],["EC%3A2.3.3.16","citrate synthase (unknown stereospecificity)"],["EC%3A2.3.3.3","citrate (Re)-synthase"],["EC%3A2.3.3.8","ATP citrate synthase"],["EC%3A2.8.3.10","citrate CoA-transferase"],["EC%3A4.1.3.6","citrate (pro-3S)-lyase"]],"b":[["mapped/Citrate.yaml","Citrate"]]},{"id":"CHEBI:36241","l":"","na":49,"nb":1,"a":[["EC%3A1.13.11.3","protocatechuate 3,4-dioxygenase"],["EC%3A1.13.11.8","protocatechuate 4,5-dioxygenase"],["EC%3A1.14.12.8","4-sulfobenzoate 3,4-dioxygenase"],["EC%3A1.14.13.2","4-hydroxybenzoate 3-monooxygenase"],["EC%3A1.14.13.23","3-hydroxybenzoate 4-monooxygenase"],["EC%3A1.14.13.33","4-hydroxybenzoate 3-monooxygenase [NAD(P)H]"]],"b":[["mapped/Protocatechuate.yaml","Protocatechuate"]]},{"id":"CHEBI:16004","l":"(R)-lactate","na":48,"nb":1,"a":[["EC%3A1.1.1.28","D-lactate dehydrogenase"],["EC%3A1.1.2.4","D-lactate dehydrogenase (cytochrome)"],["EC%3A1.1.2.5","D-lactate dehydrogenase (cytochrome c-553)"],["EC%3A1.1.5.12","D-lactate dehydrogenase (quinone)"],["EC%3A1.1.99.40","(R)-2-hydroxyglutarate--pyruvate transhydrogenase"],["EC%3A1.1.99.6","D-lactate dehydrogenase (acceptor)"]],"b":[["mapped/%28R%29-lactate.yaml","(R)-lactate"]]},{"id":"CHEBI:16199","l":"urea","na":48,"nb":1,"a":[["EC%3A3.5.1.5","urease"],["EC%3A3.5.1.95","N-malonylurea hydrolase"],["EC%3A3.5.3.1","arginase"],["EC%3A3.5.3.10","D-arginase"],["EC%3A3.5.3.11","agmatinase"],["EC%3A3.5.3.14","amidinoaspartase"]],"b":[["mapped/Urea.yaml","Urea"]]},{"id":"CHEBI:18135","l":"catechol","na":47,"nb":1,"a":[["EC%3A1.1.3.14","catechol oxidase (dimerizing)"],["EC%3A1.10.3.1","catechol oxidase"],["EC%3A1.13.11.1","catechol 1,2-dioxygenase"],["EC%3A1.13.11.2","catechol 2,3-dioxygenase"],["EC%3A1.14.12.1","anthranilate 1,2-dioxygenase (deaminating, decarboxylating)"],["EC%3A1.14.12.13","2-halobenzoate 1,2-dioxygenase"]],"b":[["mapped/Pyrocatechol.yaml","Pyrocatechol"]]},{"id":"CHEBI:35418","l":"N-acetylneuraminate","na":46,"nb":1,"a":[["EC%3A2.1.1.402","sialate 8-O-methyltransferase"],["EC%3A2.3.1.44","N-acetylneuraminate 4-O-acetyltransferase"],["EC%3A2.5.1.56","N-acetylneuraminate synthase"],["EC%3A3.1.1.53","sialate O-acetylesterase"],["EC%3A3.1.3.29","N-acylneuraminate-9-phosphatase"],["RHEA%3A47856","a ganglioside GD1a (d18:1(4E)) + H2O = a ganglioside GM1 (d18:1(4E)) + N-acetylneuraminate"]],"b":[["mapped/N-acetylneuraminate.yaml","N-acetylneuraminate"]]},{"id":"CHEBI:13705","l":"","na":42,"nb":1,"a":[["EC%3A1.1.1.30","3-hydroxybutyrate dehydrogenase"],["EC%3A1.1.99.24","hydroxyacid-oxoacid transhydrogenase"],["EC%3A1.8.1.5","2-oxopropyl-CoM reductase (carboxylating)"],["EC%3A2.3.1.247","(5S)-5-amino-3-oxohexanoate:acetyl-CoA ethylamine transferase"],["EC%3A2.3.1.317","3-dehydrocarnitine:acetyl-CoA trimethylamine transferase"],["EC%3A2.3.1.318","3-oxoadipate:acetyl-CoA acetyltransferase"]],"b":[["mapped/Acetoacetate.yaml","Acetoacetate"]]},{"id":"CHEBI:16567","l":"","na":41,"nb":1,"a":[["EC%3A1.13.11.23","2,3-dihydroxyindole 2,3-dioxygenase"],["EC%3A1.14.12.1","anthranilate 1,2-dioxygenase (deaminating, decarboxylating)"],["EC%3A1.14.13.35","anthranilate 3-monooxygenase (deaminating)"],["EC%3A1.14.14.8","anthranilate 3-monooxygenase (FAD)"],["EC%3A1.7.1.17","FMN-dependent NADH-azoreductase"],["EC%3A2.1.1.111","anthranilate N-methyltransferase"]],"b":[["mapped/2-aminobenzoate.yaml","2-aminobenzoate"]]},{"id":"CHEBI:16659","l":"D-glycerate","na":41,"nb":1,"a":[["EC%3A1.1.1.29","glycerate dehydrogenase"],["EC%3A1.1.1.60","2-hydroxy-3-oxopropionate reductase"],["EC%3A1.1.1.81","hydroxypyruvate reductase"],["EC%3A1.1.1.92","oxaloglycolate reductase (decarboxylating)"],["EC%3A1.2.1.89","D-glyceraldehyde dehydrogenase (NADP(+))"],["EC%3A1.2.99.8","glyceraldehyde dehydrogenase (FAD-containing)"]],"b":[["mapped/D-glycerate.yaml","D-glycerate"]]},{"id":"CHEBI:16382","l":"","na":40,"nb":1,"a":[["EC%3A1.11.1.8","iodide peroxidase"],["EC%3A1.21.1.1","iodotyrosine deiodinase"],["EC%3A1.21.99.3","thyroxine 5-deiodinase"],["EC%3A1.21.99.4","thyroxine 5'-deiodinase"],["EC%3A2.1.1.165","methyl halide transferase"],["RHEA%3A23336","2 iodide + H2O2 + 2 H(+) = diiodine + 2 H2O"]],"b":[["mapped/Iodide.yaml","Iodide"]]},{"id":"CHEBI:17632","l":"nitrate","na":40,"nb":1,"a":[["EC%3A1.14.12.17","nitric oxide dioxygenase"],["EC%3A1.7.1.1","nitrate reductase (NADH)"],["EC%3A1.7.1.2","nitrate reductase [NAD(P)H]"],["EC%3A1.7.1.3","nitrate reductase (NADPH)"],["EC%3A1.7.5.1","nitrate reductase (quinone)"],["EC%3A1.7.6.1","nitrite dismutase"]],"b":[["mapped/Nitrate.yaml","Nitrate"]]},{"id":"CHEBI:16374","l":"","na":39,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16374","requires vitamin K2"],["EC%3A1.1.5.4","malate dehydrogenase (quinone)"],["EC%3A1.12.5.1","hydrogen:quinone oxidoreductase"],["EC%3A1.17.5.3","formate dehydrogenase-N"],["EC%3A1.3.5.1","succinate dehydrogenase"],["EC%3A1.3.5.3","protoporphyrinogen IX dehydrogenase (quinone)"]],"b":[["mapped/Menaquinone.yaml","Menaquinone"]]},{"id":"CHEBI:29805","l":"","na":38,"nb":1,"a":[["EC%3A1.1.1.26","glyoxylate reductase"],["EC%3A1.1.1.79","glyoxylate reductase (NADP(+))"],["EC%3A1.1.3.15","(S)-2-hydroxy-acid oxidase"],["EC%3A1.1.99.14","glycolate dehydrogenase"],["EC%3A1.2.1.21","glycolaldehyde dehydrogenase"],["EC%3A3.1.3.18","phosphoglycolate phosphatase"]],"b":[["mapped/Glycolate.yaml","Glycolate"]]},{"id":"CHEBI:17158","l":"methylglyoxal","na":37,"nb":1,"a":[["EC%3A1.1.1.283","methylglyoxal reductase (NADPH)"],["EC%3A1.1.1.78","methylglyoxal reductase (NADH)"],["EC%3A1.13.11.50","acetylacetone-cleaving enzyme"],["EC%3A1.2.3.15","(methyl)glyoxal oxidase"],["EC%3A2.2.1.11","6-deoxy-5-ketofructose 1-phosphate synthase"],["EC%3A4.2.1.130","D-lactate dehydratase"]],"b":[["mapped/Methylglyoxal.yaml","methylglyoxal"]]},{"id":"CHEBI:16150","l":"benzoate","na":36,"nb":1,"a":[["EC%3A1.14.12.10","benzoate 1,2-dioxygenase"],["EC%3A1.14.14.92","benzoate 4-monooxygenase"],["EC%3A1.2.1.28","benzaldehyde dehydrogenase (NAD(+))"],["EC%3A1.2.1.7","benzaldehyde dehydrogenase (NADP(+))"],["EC%3A2.1.1.273","benzoate O-methyltransferase"],["EC%3A3.1.1.84","cocaine esterase"]],"b":[["mapped/Benzoate.yaml","Benzoate"]]},{"id":"CHEBI:30762","l":"","na":36,"nb":1,"a":[["EC%3A1.14.13.1","salicylate 1-monooxygenase"],["EC%3A1.14.13.172","salicylate 5-hydroxylase"],["EC%3A1.2.1.65","salicylaldehyde dehydrogenase"],["EC%3A2.1.1.274","salicylate carboxymethyltransferase"],["EC%3A3.1.1.55","acetylsalicylate deacetylase"],["EC%3A3.7.1.8","2,6-dioxo-6-phenylhexa-3-enoate hydrolase"]],"b":[["mapped/Salicylate.yaml","Salicylate"]]},{"id":"CHEBI:18262","l":"","na":35,"nb":1,"a":[["EC%3A1.14.14.130","laurate 7-monooxygenase"],["EC%3A3.1.2.21","dodecanoyl-[acyl-carrier-protein] hydrolase"],["RHEA%3A48540","1,2-didodecanoyl-3-beta-D-galactosyl-sn-glycerol + H2O = dodecanoyl-3-beta-D-galactosyl-sn-glycerol + dodecanoate + H(+)"],["RHEA%3A48516","1,2-didodecanoyl-3-O-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-sn-glycerol + H2O = dodecanoyl-3-O-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-sn-glycerol + dodecanoate + H(+)"],["RHEA%3A48536","1-beta-D-galactosyl-2,3-didodecanoyl-sn-glycerol + H2O = 1-beta-D-galactosyl-dodecanoyl-sn-glycerol + dodecanoate + H(+)"],["RHEA%3A44316","1-dodecanoylglycerol + H2O = dodecanoate + glycerol + H(+)"]],"b":[["mapped/Dodecanoate.yaml","Dodecanoate"]]},{"id":"CHEBI:17272","l":"propionate","na":34,"nb":1,"a":[["EC%3A1.3.1.125","acrylate reductase"],["EC%3A2.7.2.15","propionate kinase"],["EC%3A2.8.3.1","propionate CoA-transferase"],["EC%3A2.8.3.27","propanoyl-CoA:succinate CoA transferase"],["EC%3A4.1.3.32","2,3-dimethylmalate lyase"],["EC%3A6.2.1.13","acetate--CoA ligase (ADP-forming)"]],"b":[["mapped/Propionate.yaml","Propionate"]]},{"id":"CHEBI:17968","l":"butyrate","na":33,"nb":1,"a":[["EC%3A1.3.1.31","2-enoate reductase"],["EC%3A2.3.1.315","succinyl-CoA:cyclohexane-1-carboxylate CoA transferase"],["EC%3A2.7.2.7","butyrate kinase"],["EC%3A2.8.3.9","butyrate--acetoacetate CoA-transferase"],["EC%3A3.1.1.51","phorbol-diester hydrolase"],["EC%3A3.7.1.7","beta-diketone hydrolase"]],"b":[["mapped/Butyrate.yaml","Butyrate"]]},{"id":"CHEBI:15882","l":"phenol","na":31,"nb":1,"a":[["EC%3A1.14.13.244","phenol 2-monooxygenase (NADH)"],["EC%3A1.14.13.7","phenol 2-monooxygenase (NADPH)"],["EC%3A1.14.14.20","phenol 2-monooxygenase (FADH2)"],["EC%3A2.1.1.25","phenol O-methyltransferase"],["EC%3A2.4.2.55","nicotinate D-ribonucleotide:phenol phospho-D-ribosyltransferase"],["EC%3A2.7.1.238","phenol phosphorylase"]],"b":[["mapped/Phenol.yaml","Phenol"]]},{"id":"CHEBI:16236","l":"ethanol","na":31,"nb":1,"a":[["EC%3A1.1.1.1","alcohol dehydrogenase"],["EC%3A1.1.5.5","alcohol dehydrogenase (quinone)"],["EC%3A1.1.99.36","alcohol dehydrogenase (nicotinoprotein)"],["EC%3A2.3.1.268","ethanol O-acetyltransferase"],["EC%3A3.1.1.113","ethyl acetate hydrolase"],["EC%3A3.1.1.67","fatty-acyl-ethyl-ester synthase"]],"b":[["mapped/Ethanol.yaml","Ethanol"]]},{"id":"CHEBI:17245","l":"carbon monoxide","na":31,"nb":1,"a":[["EC%3A1.13.11.24","quercetin 2,3-dioxygenase"],["EC%3A1.13.11.47","3-hydroxy-4-oxoquinoline 2,4-dioxygenase"],["EC%3A1.13.11.48","3-hydroxy-2-methylquinolin-4-one 2,4-dioxygenase"],["EC%3A1.13.11.53","acireductone dioxygenase (Ni(2+)-requiring)"],["EC%3A1.14.14.18","heme oxygenase (biliverdin-producing)"],["EC%3A1.14.15.20","heme oxygenase (biliverdin-producing, ferredoxin)"]],"b":[["mapped/Carbon_Monoxide.yaml","Carbon Monoxide"]]},{"id":"CHEBI:17347","l":"testosterone","na":30,"nb":1,"a":[["EC%3A1.1.1.239","3alpha-(17beta)-hydroxysteroid dehydrogenase (NAD(+))"],["EC%3A1.1.1.51","3(or 17)beta-hydroxysteroid dehydrogenase"],["EC%3A1.1.1.64","testosterone 17beta-dehydrogenase (NADP(+))"],["EC%3A1.14.14.14","aromatase"],["EC%3A1.14.14.197","progesterone 11alpha-monooxygenase"],["EC%3A1.14.15.19","C-19 steroid 1alpha-hydroxylase"]],"b":[["mapped/Testosterone.yaml","testosterone"]]},{"id":"CHEBI:30854","l":"","na":29,"nb":1,"a":[["EC%3A1.14.13.168","indole-3-pyruvate monooxygenase"],["EC%3A1.14.13.235","indole-3-acetate monooxygenase"],["EC%3A1.2.3.7","indole-3-acetaldehyde oxidase"],["EC%3A2.1.1.278","indole-3-acetate O-methyltransferase"],["EC%3A2.4.1.121","indole-3-acetate beta-glucosyltransferase"],["EC%3A3.5.1.134","(indol-3-yl)acetyl-L-aspartate hydrolase"]],"b":[["mapped/Indole-3-acetate.yaml","Indole-3-acetate"]]},{"id":"CHEBI:15347","l":"acetone","na":27,"nb":1,"a":[["EC%3A1.1.1.80","isopropanol dehydrogenase (NADP(+))"],["EC%3A1.14.13.226","acetone monooxygenase (methyl acetate-forming)"],["EC%3A1.14.14.141","psoralen synthase"],["EC%3A1.14.14.148","angelicin synthase"],["EC%3A2.6.3.1","oximinotransferase"],["EC%3A4.1.1.4","acetoacetate decarboxylase"]],"b":[["mapped/Acetone.yaml","acetone"]]},{"id":"CHEBI:15792","l":"","na":27,"nb":1,"a":[["EC%3A1.2.1.15","malonate-semialdehyde dehydrogenase"],["EC%3A2.3.1.187","acetyl-S-ACP:malonate ACP transferase"],["EC%3A2.8.3.13","succinate--hydroxymethylglutarate CoA-transferase"],["EC%3A2.8.3.3","malonate CoA-transferase"],["EC%3A3.5.1.95","N-malonylurea hydrolase"],["EC%3A4.1.1.88","biotin-independent malonate decarboxylase"]],"b":[["mapped/Malonate.yaml","Malonate"]]},{"id":"CHEBI:17071","l":"glycolaldehyde","na":27,"nb":1,"a":[["EC%3A1.11.1.14","lignin peroxidase"],["EC%3A1.11.1.16","versatile peroxidase"],["EC%3A1.13.11.81","7,8-dihydroneopterin oxygenase"],["EC%3A1.2.1.21","glycolaldehyde dehydrogenase"],["EC%3A1.4.3.8","ethanolamine oxidase"],["EC%3A4.1.1.40","hydroxypyruvate decarboxylase"]],"b":[["mapped/Glycolaldehyde.yaml","glycolaldehyde"]]},{"id":"CHEBI:16217","l":"","na":26,"nb":1,"a":[["EC%3A1.1.1.118","glucose 1-dehydrogenase (NAD(+))"],["EC%3A1.1.1.119","glucose 1-dehydrogenase (NADP(+))"],["EC%3A1.1.1.359","aldose 1-dehydrogenase [NAD(P)(+)]"],["EC%3A1.1.1.360","glucose/galactose 1-dehydrogenase"],["EC%3A1.1.1.47","glucose 1-dehydrogenase [NAD(P)(+)]"],["EC%3A1.1.3.4","glucose oxidase"]],"b":[["mapped/D-_-gluconic_Acid_Gamma-lactone.yaml","D-(+)-Gluconic acid gamma-lactone"]]},{"id":"CHEBI:17169","l":"","na":26,"nb":1,"a":[["EC%3A1.2.1.28","benzaldehyde dehydrogenase (NAD(+))"],["EC%3A1.2.1.7","benzaldehyde dehydrogenase (NADP(+))"],["EC%3A4.1.1.7","benzoylformate decarboxylase"],["EC%3A4.1.2.10","(R)-mandelonitrile lyase"],["EC%3A4.1.2.26","phenylserine aldolase"],["EC%3A4.1.2.38","benzoin aldolase"]],"b":[["mapped/Benzaldehyde.yaml","Benzaldehyde"]]},{"id":"CHEBI:30839","l":"","na":26,"nb":1,"a":[["EC%3A1.3.1.14","dihydroorotate dehydrogenase (NAD(+))"],["EC%3A1.3.1.15","dihydroorotate dehydrogenase (NADP(+))"],["EC%3A1.3.5.2","dihydroorotate dehydrogenase (quinone)"],["EC%3A1.3.98.1","dihydroorotate oxidase (fumarate)"],["EC%3A2.4.2.10","orotate phosphoribosyltransferase"],["RHEA%3A29347","orotate(in) + 2 H(+)(in) = orotate(out) + 2 H(+)(out)"]],"b":[["mapped/Orotate.yaml","Orotate"]]},{"id":"CHEBI:17594","l":"","na":25,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_17594","requires hydroquinone"],["EC%3A1.10.3.2","laccase"],["EC%3A1.13.11.66","hydroquinone 1,2-dioxygenase"],["EC%3A1.14.13.64","4-hydroxybenzoate 1-hydroxylase"],["EC%3A1.6.5.6","p-benzoquinone reductase (NADPH)"],["EC%3A1.8.5.7","glutathionyl-hydroquinone reductase"]],"b":[["mapped/Hydroquinone.yaml","Hydroquinone"]]},{"id":"CHEBI:18346","l":"vanillin","na":25,"nb":1,"a":[["EC%3A1.1.3.38","vanillyl-alcohol oxidase"],["EC%3A1.11.1.16","versatile peroxidase"],["EC%3A1.13.11.43","lignostilbene alphabeta-dioxygenase"],["EC%3A1.13.11.88","isoeugenol monooxygenase"],["EC%3A1.13.11.94","4-vinylguaiacol dioxygenase"],["EC%3A1.2.1.67","vanillin dehydrogenase"]],"b":[["mapped/Vanillin.yaml","Vanillin"]]},{"id":"CHEBI:16551","l":"","na":24,"nb":1,"a":[["EC%3A2.3.1.122","trehalose O-mycolyltransferase"],["EC%3A2.3.1.279","long-chain-acyl-CoA--trehalose acyltransferase"],["EC%3A2.4.1.231","alpha,alpha-trehalose phosphorylase (configuration-retaining)"],["EC%3A2.4.1.245","alpha,alpha-trehalose synthase"],["EC%3A2.4.1.64","alpha,alpha-trehalose phosphorylase"],["EC%3A2.7.1.201","protein-N(pi)-phosphohistidine--trehalose phosphotransferase"]],"b":[["mapped/Alphaalpha-Trehalose.yaml","alpha,alpha-Trehalose"]]},{"id":"CHEBI:17597","l":"","na":24,"nb":1,"a":[["EC%3A1.1.3.19","4-hydroxymandelate oxidase (decarboxylating)"],["EC%3A1.13.11.94","4-vinylguaiacol dioxygenase"],["EC%3A1.17.9.1","4-methylphenol dehydrogenase (hydroxylating)"],["EC%3A1.2.1.64","4-hydroxybenzaldehyde dehydrogenase (NAD(+))"],["EC%3A1.2.1.96","4-hydroxybenzaldehyde dehydrogenase (NADP(+))"],["EC%3A4.1.2.11","hydroxymandelonitrile lyase"]],"b":[["mapped/4-Hydroxybenzaldehyde.yaml","4-Hydroxybenzaldehyde"]]},{"id":"CHEBI:17234","l":"glucose","na":1,"nb":23,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"]],"b":[["mapped/Corn_Steep_Liquor_Glucose_Fumarate.yaml","Corn Steep Liquor + Glucose + Fumarate"],["mapped/Fastidious_Anaerobe_Broth_With_Meat_Granules.yaml","Fastidious Anaerobe Broth With Meat Granules"],["mapped/GYPS.yaml","GYPS"],["mapped/Glucose.yaml","Glucose"],["mapped/Glucose_2.yaml","glucose"],["mapped/Glucose_Acetate.yaml","Glucose + Acetate"]]},{"id":"CHEBI:36257","l":"","na":22,"nb":1,"a":[["RHEA%3A79091","an L-alpha-amino acid + taurocholate = an N-choloyl-L-alpha-amino acid + taurine"],["RHEA%3A47108","cholate + taurine = taurocholate + H2O"],["RHEA%3A47100","choloyl-CoA + taurine = taurocholate + CoA + H(+)"],["RHEA%3A67560","taurocholate + 3'-phosphoadenylyl sulfate = taurocholate 7-sulfate + adenosine 3',5'-bisphosphate + H(+)"],["RHEA%3A50052","taurocholate(in) + ATP + H2O = taurocholate(out) + ADP + phosphate + H(+)"],["RHEA%3A66404","taurocholate(in) + glutathione(in) + ATP + H2O = taurocholate(out) + glutathione(out) + ADP + phosphate + H(+)"]],"b":[["mapped/Taurocholate.yaml","Taurocholate"]]},{"id":"CHEBI:53455","l":"","na":22,"nb":1,"a":[["EC%3A1.1.1.175","D-xylose 1-dehydrogenase"],["EC%3A1.1.1.179","D-xylose 1-dehydrogenase (NADP(+), D-xylono-1,5-lactone-forming)"],["EC%3A1.1.1.307","D-xylose reductase [NAD(P)H]"],["EC%3A1.1.1.359","aldose 1-dehydrogenase [NAD(P)(+)]"],["EC%3A1.1.1.430","D-xylose reductase (NADH)"],["EC%3A1.1.1.431","D-xylose reductase (NADPH)"]],"b":[["mapped/Glucose_Xylose.yaml","Glucose + Xylose"]]},{"id":"CHEBI:17748","l":"thymidine","na":21,"nb":1,"a":[["EC%3A2.4.2.2","pyrimidine-nucleoside phosphorylase"],["EC%3A2.4.2.4","thymidine phosphorylase"],["EC%3A2.7.1.114","AMP--thymidine kinase"],["EC%3A2.7.1.118","ADP--thymidine kinase"],["EC%3A2.7.1.145","deoxynucleoside kinase"],["EC%3A2.7.1.21","thymidine kinase"]],"b":[["mapped/Thymidine.yaml","Thymidine"]]},{"id":"CHEBI:16016","l":"dihydroxyacetone","na":20,"nb":1,"a":[["EC%3A1.1.1.156","glycerol 2-dehydrogenase (NADP(+))"],["EC%3A1.1.1.6","glycerol dehydrogenase"],["EC%3A1.1.99.22","glycerol dehydrogenase (acceptor)"],["EC%3A2.2.1.3","formaldehyde transketolase"],["EC%3A2.7.1.121","phosphoenolpyruvate--glycerone phosphotransferase"],["EC%3A2.7.1.29","glycerone kinase"]],"b":[["mapped/Dihydroxyacetone.yaml","Dihydroxyacetone"]]},{"id":"CHEBI:17716","l":"lactose","na":20,"nb":1,"a":[["EC%3A2.4.1.22","lactose synthase"],["EC%3A2.7.1.207","protein-N(pi)-phosphohistidine--lactose phosphotransferase"],["EC%3A3.2.1.108","lactase"],["EC%3A3.2.1.140","lacto-N-biosidase"],["EC%3A3.2.1.227","N-acetyllactosaminidase"],["RHEA%3A86923","a beta-D-Gal-(1->4)-beta-D-Glc-(1<->1)-Cer(d18:1(4E)) + H2O = lactose + an N-acylsphing-4-enine"]],"b":[["mapped/Lactose.yaml","Lactose"]]},{"id":"CHEBI:17836","l":"4-aminobenzoate","na":20,"nb":1,"a":[["EC%3A1.14.13.27","4-aminobenzoate 1-monooxygenase"],["EC%3A1.14.99.68","4-aminobenzoate N-oxygenase"],["EC%3A2.4.2.54","beta-ribofuranosylphenol 5'-phosphate synthase"],["EC%3A2.5.1.15","dihydropteroate synthase"],["EC%3A4.1.1.24","aminobenzoate decarboxylase"],["EC%3A4.1.3.38","aminodeoxychorismate lyase"]],"b":[["mapped/4-aminobenzoate.yaml","4-Aminobenzoate"]]},{"id":"CHEBI:17924","l":"D-glucitol","na":20,"nb":1,"a":[["EC%3A1.1.1.14","L-iditol 2-dehydrogenase"],["EC%3A1.1.1.289","sorbose reductase"],["EC%3A1.1.3.40","D-mannitol oxidase"],["EC%3A1.1.99.21","D-sorbitol dehydrogenase (acceptor)"],["EC%3A1.1.99.28","glucose-fructose oxidoreductase"],["EC%3A2.7.1.198","protein-N(pi)-phosphohistidine--D-sorbitol phosphotransferase"]],"b":[["mapped/D-sorbitol.yaml","D-Sorbitol"]]},{"id":"CHEBI:16709","l":"pyridoxine","na":19,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16709","requires pyridoxine"],["EC%3A1.1.1.65","pyridoxine 4-dehydrogenase"],["EC%3A1.1.3.12","pyridoxine 4-oxidase"],["EC%3A1.1.99.9","pyridoxine 5-dehydrogenase"],["EC%3A2.4.1.160","pyridoxine 5'-O-beta-D-glucosyltransferase"],["EC%3A2.7.1.35","pyridoxal kinase"]],"b":[["mapped/Pyridoxine.yaml","Pyridoxine"]]},{"id":"CHEBI:17447","l":"","na":19,"nb":1,"a":[["EC%3A1.1.1.183","geraniol dehydrogenase (NADP(+))"],["EC%3A1.1.1.347","geraniol dehydrogenase (NAD(+))"],["EC%3A1.14.14.83","geraniol 8-hydroxylase"],["EC%3A2.7.1.216","farnesol kinase"],["EC%3A3.1.7.11","geranyl diphosphate diphosphatase"],["EC%3A5.4.4.4","geraniol isomerase"]],"b":[["mapped/Geraniol.yaml","Geraniol"]]},{"id":"CHEBI:17997","l":"dinitrogen","na":18,"nb":1,"a":[["EC%3A1.18.6.1","nitrogenase"],["EC%3A1.18.6.2","vanadium-dependent nitrogenase"],["EC%3A1.19.6.1","nitrogenase (flavodoxin)"],["EC%3A1.7.2.4","nitrous-oxide reductase"],["EC%3A1.7.2.8","hydrazine dehydrogenase"],["RHEA%3A79967","3-diazoavenalumate + NADH + H(+) = avenalumate + N2 + NAD(+)"]],"b":[["mapped/Nitrogen_gas.yaml","Nitrogen gas"]]},{"id":"CHEBI:16881","l":"","na":17,"nb":1,"a":[["EC%3A1.13.11.17","indole 2,3-dioxygenase"],["EC%3A1.14.14.153","indole-2-monooxygenase"],["EC%3A4.1.1.92","indole-3-carboxylate decarboxylase"],["EC%3A4.1.2.8","indole-3-glycerol-phosphate lyase"],["EC%3A4.1.99.1","tryptophanase"],["EC%3A4.2.1.122","tryptophan synthase (indole-salvaging)"]],"b":[["mapped/Indole.yaml","Indole"]]},{"id":"CHEBI:17120","l":"hexanoate","na":17,"nb":1,"a":[["EC%3A3.5.1.39","alkylamidase"],["RHEA%3A53496","1-hexanoyl-2-acyl-sn-glycero-3-phosphocholine + H2O = hexanoate + a 2-acyl-sn-glycero-3-phosphocholine + H(+)"],["RHEA%3A54464","1-octadecanoyl-2-hexanoyl-sn-glycero-3-phosphocholine + H2O = hexanoate + 1-octadecanoyl-sn-glycero-3-phosphocholine + H(+)"],["RHEA%3A47352","a hexanoate ester + H2O = an aliphatic alcohol + hexanoate + H(+)"],["RHEA%3A79351","hexanal + 2 Fe(III)-[cytochrome c] + H2O = hexanoate + 2 Fe(II)-[cytochrome c] + 3 H(+)"],["RHEA%3A67276","hexanal + NAD(+) + H2O = hexanoate + NADH + 2 H(+)"]],"b":[["mapped/Hexanoate.yaml","Hexanoate"]]},{"id":"CHEBI:10352","l":"","na":16,"nb":1,"a":[["EC%3A1.14.14.126","beta-amyrin 28-monooxygenase"],["EC%3A1.14.14.134","beta-amyrin 24-hydroxylase"],["EC%3A1.14.14.152","beta-amyrin 11-oxidase"],["EC%3A1.14.14.171","beta-amyrin 16alpha-hydroxylase"],["EC%3A1.14.14.63","beta-amyrin 16beta-monooxygenase"],["EC%3A1.14.14.64","beta-amyrin 6beta-monooxygenase"]],"b":[["mapped/Beta-Amyrin.yaml","Beta-Amyrin"]]},{"id":"CHEBI:15889","l":"","na":16,"nb":1,"a":[["EC%3A2.3.1.26","sterol O-acyltransferase"],["EC%3A2.3.1.43","phosphatidylcholine--sterol O-acyltransferase"],["EC%3A2.3.1.73","diacylglycerol--sterol O-acyltransferase"],["EC%3A2.4.1.173","sterol 3beta-glucosyltransferase"],["EC%3A3.1.1.13","sterol esterase"],["RHEA%3A21204","a sterol + a 1,2-diacyl-sn-glycero-3-phosphocholine = a sterol ester + a 1-acyl-sn-glycero-3-phosphocholine"]],"b":[["mapped/Sterol.yaml","Sterol"]]},{"id":"CHEBI:16247","l":"","na":16,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A9.A.79","The Autophagosomal Phospholipid Transmembrane Translocase (Atg9) Family"],["TCDB%3A9.A.36","The Ca2+-dependent Phospholipid Scramblase (Scramblase) Family"],["TCDB%3A1.A.17","The Calcium-dependent Chloride Channel (Ca-ClC) Family"],["TCDB%3A9.B.27","The Death Effector Domain A (DedA) Family"],["TCDB%3A8.A.97","The EPG-3/VMP1 (EPG/VPM) Scramblase Family"]],"b":[["mapped/Bacto_Soytone.yaml","Bacto Soytone"]]},{"id":"CHEBI:17151","l":"xylitol","na":16,"nb":1,"a":[["EC%3A1.1.1.10","L-xylulose reductase"],["EC%3A1.1.1.15","D-iditol 2-dehydrogenase"],["EC%3A1.1.1.307","D-xylose reductase [NAD(P)H]"],["EC%3A1.1.1.430","D-xylose reductase (NADH)"],["EC%3A1.1.1.431","D-xylose reductase (NADPH)"],["EC%3A1.1.1.9","D-xylulose reductase"]],"b":[["mapped/Xylitol.yaml","Xylitol"]]},{"id":"CHEBI:17240","l":"","na":15,"nb":1,"a":[["EC%3A2.8.3.22","succinyl-CoA--L-malate CoA-transferase"],["EC%3A4.1.1.113","trans-aconitate decarboxylase"],["EC%3A4.1.1.6","cis-aconitate decarboxylase"],["EC%3A6.2.1.4","succinate--CoA ligase (GDP-forming)"],["RHEA%3A15253","cis-aconitate + H(+) = itaconate + CO2"],["RHEA%3A86311","itaconate + ATP + CoA = itaconyl-CoA + ADP + phosphate"]],"b":[["mapped/Itaconate.yaml","Itaconate"]]},{"id":"CHEBI:17987","l":"","na":15,"nb":1,"a":[["EC%3A1.14.15.26","toluene methyl-monooxygenase"],["EC%3A2.3.1.196","benzyl alcohol O-benzoyltransferase"],["EC%3A2.3.1.224","acetyl-CoA-benzylalcohol acetyltransferase"],["EC%3A3.1.1.70","cetraxate benzylesterase"],["EC%3A3.5.1.58","N-benzyloxycarbonylglycine hydrolase"],["EC%3A3.5.1.64","N(alpha)-benzyloxycarbonylleucine hydrolase"]],"b":[["mapped/Benzyl_Alcohol.yaml","Benzyl Alcohol"]]},{"id":"CHEBI:15698","l":"","na":14,"nb":1,"a":[["EC%3A2.7.1.74","deoxycytidine kinase"],["EC%3A3.5.1.135","N(4)-acetylcytidine amidohydrolase"],["EC%3A3.5.4.5","cytidine deaminase"],["RHEA%3A20061","2'-deoxycytidine + a ribonucleoside 5'-triphosphate = dCMP + a ribonucleoside 5'-diphosphate + H(+)"],["RHEA%3A46040","2'-deoxycytidine + ATP = dCMP + ADP + H(+)"],["RHEA%3A13433","2'-deoxycytidine + H2O + H(+) = 2'-deoxyuridine + NH4(+)"]],"b":[["mapped/2-Deoxycytidine.yaml","2'-Deoxycytidine"]]},{"id":"CHEBI:15846","l":"NAD(+)","na":14,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_15846","requires NAD+"],["ARO%3A3002846","arr-1"],["ARO%3A3002847","arr-2"],["ARO%3A3002848","arr-3"],["ARO%3A3002849","arr-4"],["ARO%3A3002850","arr-5"]],"b":[["mapped/Beta-nad.yaml","beta-NAD"]]},{"id":"CHEBI:16450","l":"","na":14,"nb":1,"a":[["EC%3A1.14.11.10","pyrimidine-deoxynucleoside 1'-dioxygenase"],["EC%3A1.14.11.3","pyrimidine-deoxynucleoside 2'-dioxygenase"],["EC%3A2.4.2.2","pyrimidine-nucleoside phosphorylase"],["EC%3A3.5.4.5","cytidine deaminase"],["RHEA%3A13433","2'-deoxycytidine + H2O + H(+) = 2'-deoxyuridine + NH4(+)"],["RHEA%3A23316","2'-deoxyuridine + 2-oxoglutarate + O2 = 2-deoxy-D-ribono-1,4-lactone + uracil + succinate + CO2"]],"b":[["mapped/2-deoxyuridine.yaml","2'-Deoxyuridine"]]},{"id":"CHEBI:16619","l":"(2-trans,6-trans)-farnesol","na":14,"nb":1,"a":[["EC%3A1.1.1.216","farnesol dehydrogenase"],["EC%3A1.1.1.354","farnesol dehydrogenase (NAD(+))"],["EC%3A2.7.1.216","farnesol kinase"],["EC%3A3.1.7.6","farnesyl diphosphatase"],["EC%3A5.2.1.9","farnesol 2-isomerase"],["RHEA%3A13401","(2E,6E)-farnesol = (2Z,6E)-farnesol"]],"b":[["mapped/TransTrans-Farnesol.yaml","Trans,Trans-Farnesol"]]},{"id":"CHEBI:18401","l":"","na":14,"nb":1,"a":[["EC%3A1.14.14.54","phenylacetate 2-hydroxylase"],["EC%3A1.2.1.39","phenylacetaldehyde dehydrogenase"],["EC%3A4.1.1.119","phenylacetate decarboxylase"],["EC%3A6.2.1.30","phenylacetate--CoA ligase"],["RHEA%3A21392","2-phenylacetaldehyde + NAD(+) + H2O = 2-phenylacetate + NADH + 2 H(+)"],["RHEA%3A64820","2-phenylacetamide + H2O = 2-phenylacetate + NH4(+)"]],"b":[["mapped/Phenylacetate.yaml","Phenylacetate"]]},{"id":"CHEBI:28262","l":"dimethyl sulfoxide","na":14,"nb":1,"a":[["EC%3A1.14.13.245","assimilatory dimethylsulfide S-monooxygenase"],["EC%3A1.8.1.17","dimethylsulfone reductase"],["EC%3A1.8.2.4","dimethyl sulfide:cytochrome c2 reductase"],["EC%3A1.8.5.3","respiratory dimethylsulfoxide reductase"],["RHEA%3A30587","2-demethylmenaquinol-8 + dimethyl sulfoxide = 2-demethylmenaquinone-8 + dimethyl sulfide + H2O"],["RHEA%3A30227","2 Fe(III)-[cytochrome c2] + dimethyl sulfide + H2O = 2 Fe(II)-[cytochrome c2] + dimethyl sulfoxide + 2 H(+)"]],"b":[["mapped/Dimethyl_Sulfoxide.yaml","Dimethyl sulfoxide"]]},{"id":"CHEBI:10983","l":"(R)-3-hydroxybutyrate","na":13,"nb":1,"a":[["EC%3A1.1.1.30","3-hydroxybutyrate dehydrogenase"],["EC%3A3.1.1.22","hydroxybutyrate-dimer hydrolase"],["EC%3A3.1.1.75","poly(3-hydroxybutyrate) depolymerase"],["RHEA%3A65204","(3R)-3-hydroxybutanoyl-CoA + H2O = (R)-3-hydroxybutanoate + CoA + H(+)"],["RHEA%3A10172","(3R)-hydroxybutanoate dimer + H2O = 2 (R)-3-hydroxybutanoate + H(+)"],["RHEA%3A11248","[(3R)-hydroxybutanoate](n) + H2O = [(3R)-hydroxybutanoate](n-1) + (R)-3-hydroxybutanoate + H(+)"]],"b":[["mapped/R-3-hydroxybutyrate.yaml","(R)-3-hydroxybutyrate"]]},{"id":"CHEBI:15588","l":"","na":13,"nb":1,"a":[["EC%3A1.1.1.83","D-malate dehydrogenase (decarboxylating)"],["EC%3A1.1.99.40","(R)-2-hydroxyglutarate--pyruvate transhydrogenase"],["EC%3A2.8.3.20","succinyl-CoA--D-citramalate CoA-transferase"],["EC%3A4.2.1.31","maleate hydratase"],["RHEA%3A81419","(3R)-3-hydroxy-4-oxobutanoate + NAD(+) + H2O = (R)-malate + NADH + 2 H(+)"],["RHEA%3A81423","(3R)-3-hydroxy-4-oxobutanoate + NADP(+) + H2O = (R)-malate + NADPH + 2 H(+)"]],"b":[["mapped/D-malate.yaml","D-malate"]]},{"id":"CHEBI:15724","l":"","na":13,"nb":1,"a":[["EC%3A1.14.13.148","trimethylamine monooxygenase"],["EC%3A1.7.2.3","trimethylamine-N-oxide reductase"],["EC%3A4.1.2.32","trimethylamine-oxide aldolase"],["RHEA%3A30583","2-demethylmenaquinol-8 + trimethylamine N-oxide + H(+) = 2-demethylmenaquinone-8 + trimethylamine + H2O"],["RHEA%3A24236","trimethylamine + 2 Fe(III)-[cytochrome c] + H2O = trimethylamine N-oxide + 2 Fe(II)-[cytochrome c] + 3 H(+)"],["RHEA%3A29271","trimethylamine N-oxide + a menaquinol + H(+) = trimethylamine + a menaquinone + H2O"]],"b":[["mapped/Trimethylamine-N-oxide.yaml","Trimethylamine-N-oxide"]]},{"id":"CHEBI:16183","l":"methane","na":13,"nb":1,"a":[["EC%3A1.14.13.25","methane monooxygenase (soluble)"],["EC%3A1.14.18.3","methane monooxygenase (particulate)"],["EC%3A2.8.4.1","coenzyme-B sulfoethylthiotransferase"],["EC%3A4.7.1.1","alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase"],["RHEA%3A34707","alpha-D-ribose 1-methylphosphonate 5-phosphate + AH2 + S-adenosyl-L-methionine = alpha-D-ribose 1,2-cyclic phosphate 5-phosphate + methane + 5'-deoxyadenosine + L-methionine + A + H(+)"],["RHEA%3A12532","coenzyme B + methyl-coenzyme M = methane + coenzyme M-coenzyme B heterodisulfide"]],"b":[["mapped/Methane.yaml","methane"]]},{"id":"CHEBI:17045","l":"dinitrogen oxide","na":13,"nb":1,"a":[["EC%3A1.7.1.14","nitric oxide reductase [NAD(P)(+), nitrous oxide-forming]"],["EC%3A1.7.2.4","nitrous-oxide reductase"],["EC%3A1.7.2.5","nitric-oxide reductase (cytochrome c)"],["EC%3A1.7.5.2","nitric oxide reductase (menaquinol)"],["RHEA%3A30215","a menaquinol + 2 nitric oxide = nitrous oxide + a menaquinone + H2O"],["RHEA%3A43108","N2 + 2 Fe(III)-[cytochrome c] + H2O = nitrous oxide + 2 Fe(II)-[cytochrome c] + 2 H(+)"]],"b":[["mapped/Nitrous_Oxide.yaml","nitrous oxide"]]},{"id":"CHEBI:17578","l":"toluene","na":13,"nb":1,"a":[["EC%3A1.14.12.11","toluene dioxygenase"],["EC%3A1.14.13.236","toluene 4-monooxygenase"],["EC%3A1.14.13.243","toluene 2-monooxygenase"],["EC%3A1.14.15.26","toluene methyl-monooxygenase"],["EC%3A4.1.1.119","phenylacetate decarboxylase"],["EC%3A4.1.99.11","benzylsuccinate synthase"]],"b":[["mapped/Toluene.yaml","Toluene"]]},{"id":"CHEBI:17612","l":"","na":13,"nb":1,"a":[["EC%3A1.13.11.15","3,4-dihydroxyphenylacetate 2,3-dioxygenase"],["EC%3A1.14.12.9","4-chlorophenylacetate 3,4-dioxygenase"],["EC%3A1.14.14.9","4-hydroxyphenylacetate 3-monooxygenase"],["EC%3A4.1.1.83","4-hydroxyphenylacetate decarboxylase"],["RHEA%3A69080","3,4-dihydroxyphenylacetaldehyde + NAD(+) + H2O = 3,4-dihydroxyphenylacetate + NADH + 2 H(+)"],["RHEA%3A62556","3,4-dihydroxyphenylacetate + H(+) = 4-methylcatechol + CO2"]],"b":[["mapped/34-Dihydroxyphenylacetate.yaml","3,4-Dihydroxyphenylacetate"]]},{"id":"CHEBI:18404","l":"","na":13,"nb":1,"a":[["EC%3A1.14.12.23","nitroarene dioxygenase"],["EC%3A1.14.13.243","toluene 2-monooxygenase"],["EC%3A1.3.1.19","cis-1,2-dihydrobenzene-1,2-diol dehydrogenase"],["EC%3A1.3.1.68","1,2-dihydroxy-6-methylcyclohexa-3,5-dienecarboxylate dehydrogenase"],["RHEA%3A15657","1,6-dihydroxy-2-methylcyclohexa-2,4-dienecarboxylate + NAD(+) = 3-methylcatechol + CO2 + NADH"],["RHEA%3A25193","(1S,2R)-3-methylcyclohexa-3,5-diene-1,2-diol + NAD(+) = 3-methylcatechol + NADH + H(+)"]],"b":[["mapped/3-Methylcatechol.yaml","3-Methylcatechol"]]},{"id":"CHEBI:27689","l":"","na":13,"nb":1,"a":[["RHEA%3A48596","1,2-didecanoylglycerol + H2O = decanoylglycerol + decanoate + H(+)"],["RHEA%3A44320","1-decanoylglycerol + H2O = decanoate + glycerol + H(+)"],["RHEA%3A44104","decanal + NAD(+) + H2O = decanoate + NADH + 2 H(+)"],["RHEA%3A33627","decanoate + ATP + CoA = decanoyl-CoA + AMP + diphosphate"],["RHEA%3A65008","decanoate + ATP + H(+) = decanoyl-AMP + diphosphate"],["RHEA%3A47360","decanoate ester + H2O = decanoate + an aliphatic alcohol + H(+)"]],"b":[["mapped/Decanoate.yaml","Decanoate"]]},{"id":"CHEBI:28037","l":"","na":13,"nb":1,"a":[["EC%3A1.1.3.29","N-acylhexosamine oxidase"],["EC%3A3.2.1.217","exo-acting protein-alpha-N-acetylgalactosaminidase"],["EC%3A3.2.1.49","alpha-N-acetylgalactosaminidase"],["RHEA%3A70555","a 3-O-[N-acetyl-alpha-D-galactosaminyl]-L-seryl-[protein] + H2O = N-acetyl-D-galactosamine + L-seryl-[protein]"],["RHEA%3A70559","a 3-O-[N-acetyl-alpha-D-galactosaminyl]-L-threonyl-[protein] + H2O = N-acetyl-D-galactosamine + L-threonyl-[protein]"],["RHEA%3A82815","a beta-D-GalNAc-(1->3)-alpha-D-Gal-(1->3)-[alpha-L-Fuc-(1->2)]-beta-D-Gal-(1->4)-beta-D-GlcNAc derivative + H2O = an alpha-D-Gal-(1->3)-[alpha-L-Fuc-(1->2)]-beta-D-Gal-(1->4)-beta-D-GlcNAc derivative + N-acetyl-D-galactosamine"]],"b":[["mapped/N-Acetyl-D-galactosamine.yaml","N-Acetyl-D-galactosamine"]]},{"id":"CHEBI:28946","l":"","na":13,"nb":1,"a":[["EC%3A1.14.13.178","methylxanthine N(1)-demethylase"],["EC%3A1.14.13.179","methylxanthine N(3)-demethylase"],["EC%3A1.17.5.2","caffeine dehydrogenase"],["EC%3A2.1.1.159","theobromine synthase"],["EC%3A2.1.1.160","caffeine synthase"],["RHEA%3A24604","7-methylxanthine + S-adenosyl-L-methionine = theobromine + S-adenosyl-L-homocysteine + H(+)"]],"b":[["mapped/Theobromine.yaml","Theobromine"]]},{"id":"CHEBI:16193","l":"3-hydroxybenzoate","na":12,"nb":1,"a":[["EC%3A1.14.13.23","3-hydroxybenzoate 4-monooxygenase"],["EC%3A1.14.13.24","3-hydroxybenzoate 6-monooxygenase"],["EC%3A1.14.99.23","3-hydroxybenzoate 2-monooxygenase"],["EC%3A4.1.3.45","3-hydroxybenzoate synthase"],["EC%3A6.2.1.37","3-hydroxybenzoate--CoA ligase"],["RHEA%3A14193","3-hydroxybenzoate + AH2 + O2 = 2,3-dihydroxybenzoate + A + H2O"]],"b":[["mapped/3-hydroxybenzoate.yaml","3-hydroxybenzoate"]]},{"id":"CHEBI:26271","l":"proline","na":12,"nb":1,"a":[["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.15","The Betaine/Carnitine/Choline Transporter (BCCT) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"]],"b":[["mapped/Proline.yaml","Proline"]]},{"id":"CHEBI:28077","l":"rifampicin","na":12,"nb":1,"a":[["ARO%3A3007073","Bacillus subtilis rpoB mutants conferring resistance to rifampin"],["ARO%3A3004480","Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin"],["ARO%3A3004563","Clostridioides difficile rpoB with mutation conferring resistance to rifampicin"],["ARO%3A3003288","Escherichia coli rpoB mutants conferring resistance to rifampicin"],["ARO%3A3007051","Helicobacter pylori rpoB mutation conferring resistance to rifampicin"],["ARO%3A3003284","Mycobacterium leprae rpoB mutations conferring resistance to rifampicin"]],"b":[["mapped/Rifampicin.yaml","Rifampicin"]]},{"id":"CHEBI:28115","l":"methylcobalamin","na":12,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_28115","requires methylcobalamin"],["EC%3A1.16.1.8","[methionine synthase] reductase"],["EC%3A2.5.1.151","alkylcobalamin dealkylase"],["RHEA%3A23908","2 methylcob(III)alamin-[methionine synthase] + 2 S-adenosyl-L-homocysteine + NADP(+) + H(+) = 2 cob(II)alamin-[methionine synthase] + 2 S-adenosyl-L-methionine + NADPH"],["RHEA%3A81907","(2R,3R,5R)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + methylcob(III)alamin + S-adenosyl-L-methionine = (2R,3R,5S,6R)-6-(methyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A81911","(2R,3R,5S,6R)-6-(methyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + methylcob(III)alamin + S-adenosyl-L-methionine = (2R,3R,5S,6R)-6-(ethyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + cob(III)alamin + 5'-deoxyadenosine + L-methionine"]],"b":[["mapped/Methylcobalamin.yaml","methylcobalamin"]]},{"id":"CHEBI:30612","l":"","na":12,"nb":1,"a":[["EC%3A2.3.1.131","glucarate O-hydroxycinnamoyltransferase"],["EC%3A2.3.1.98","chlorogenate--glucarate O-hydroxycinnamoyltransferase"],["EC%3A4.2.1.40","glucarate dehydratase"],["RHEA%3A23204","chlorogenate + D-glucarate = 2-O-caffeoylglucarate + L-quinate"],["RHEA%3A14573","D-glucarate = 5-dehydro-4-deoxy-D-glucarate + H2O"],["RHEA%3A23308","D-glucarate + (E)-sinapoyl-CoA = 2-O-[(E)-sinapoyl]-D-glucarate + CoA"]],"b":[["mapped/D-glucarate.yaml","D-glucarate"]]},{"id":"CHEBI:31011","l":"","na":12,"nb":1,"a":[["EC%3A3.5.1.50","pentanamidase"],["RHEA%3A41199","1-hexadecanoyl-2-pentanoyl-sn-glycero-3-phosphocholine + H2O = pentanoate + 1-hexadecanoyl-sn-glycero-3-phosphocholine + H(+)"],["RHEA%3A54460","1-octadecanoyl-2-pentanoyl-sn-glycero-3-phosphocholine + H2O = pentanoate + 1-octadecanoyl-sn-glycero-3-phosphocholine + H(+)"],["RHEA%3A69092","pentanal + NAD(+) + H2O = pentanoate + NADH + 2 H(+)"],["RHEA%3A76663","pentanal + NADP(+) + H2O = pentanoate + NADPH + 2 H(+)"],["RHEA%3A10000","pentanamide + H2O = pentanoate + NH4(+)"]],"b":[["mapped/Valerate.yaml","Valerate"]]},{"id":"CHEBI:16134","l":"ammonia","na":11,"nb":1,"a":[["TCDB%3A1.A.11","The Ammonium Transporter Channel (Amt) Family"],["MCSA%3A376","adenosine deaminase"],["MCSA%3A75","aspartate-ammonia ligase"],["MCSA%3A449","cystathionine beta-lyase"],["MCSA%3A97","cytidine deaminase"],["MCSA%3A710","cytosine deaminase (bacterial)"]],"b":[["mapped/Ammonia.yaml","Ammonia"]]},{"id":"CHEBI:16510","l":"","na":11,"nb":1,"a":[["EC%3A1.1.1.298","3-hydroxypropionate dehydrogenase (NADP(+))"],["EC%3A1.1.1.59","3-hydroxypropionate dehydrogenase"],["EC%3A6.2.1.36","3-hydroxypropionyl-CoA synthase"],["RHEA%3A59432","3-hydroxypropanal + NAD(+) + H2O = 3-hydroxypropanoate + NADH + 2 H(+)"],["RHEA%3A59428","3-hydroxypropanal + NADP(+) + H2O = 3-hydroxypropanoate + NADPH + 2 H(+)"],["RHEA%3A67136","3-hydroxypropanoate + ATP + CoA = 3-hydroxypropanoyl-CoA + ADP + phosphate"]],"b":[["mapped/3-Hydroxypropionate.yaml","3-Hydroxypropionate"]]},{"id":"CHEBI:16537","l":"","na":11,"nb":1,"a":[["EC%3A2.3.1.130","galactarate O-hydroxycinnamoyltransferase"],["EC%3A4.2.1.158","galactarate dehydratase (D-threo-forming)"],["EC%3A4.2.1.42","galactarate dehydratase"],["RHEA%3A45808","galactarate = (2S,3R)-dihydroxy-5-oxohexanedioate + H2O"],["RHEA%3A16005","galactarate = 5-dehydro-4-deoxy-D-glucarate + H2O"],["RHEA%3A12997","galactarate + (E)-feruloyl-CoA = 2-O-[(E)-feruloyl]-D-galactarate + CoA"]],"b":[["mapped/Galactarate.yaml","Galactarate"]]},{"id":"CHEBI:16724","l":"4-hydroxybutyrate","na":11,"nb":1,"a":[["EC%3A1.1.1.61","4-hydroxybutyrate dehydrogenase"],["EC%3A1.1.1.n11","succinic semialdehyde reductase"],["EC%3A1.1.99.24","hydroxyacid-oxoacid transhydrogenase"],["EC%3A6.2.1.40","4-hydroxybutyrate--CoA ligase (AMP-forming)"],["EC%3A6.2.1.56","4-hydroxybutyrate--CoA ligase (ADP-forming)"],["RHEA%3A24734","4-hydroxybutanoate + 2-oxoglutarate = (R)-2-hydroxyglutarate + succinate semialdehyde"]],"b":[["mapped/4-hydroxybutyrate.yaml","4-hydroxybutyrate"]]},{"id":"CHEBI:16918","l":"gallate","na":11,"nb":1,"a":[["EC%3A1.13.11.57","gallate dioxygenase"],["EC%3A2.1.1.341","vanillate/3-O-methylgallate O-demethylase"],["EC%3A2.4.1.136","gallate 1-beta-glucosyltransferase"],["EC%3A3.1.1.20","tannase"],["EC%3A4.1.1.59","gallate decarboxylase"],["RHEA%3A12749","3,4,5-trihydroxybenzoate + H(+) = 1,2,3-trihydroxybenzene + CO2"]],"b":[["mapped/Gallate_Formate.yaml","Gallate + Formate"]]},{"id":"CHEBI:17847","l":"p-cresol","na":11,"nb":1,"a":[["EC%3A1.14.13.236","toluene 4-monooxygenase"],["EC%3A1.17.9.1","4-methylphenol dehydrogenase (hydroxylating)"],["EC%3A4.1.1.83","4-hydroxyphenylacetate decarboxylase"],["EC%3A4.1.99.19","2-iminoacetate synthase"],["RHEA%3A22732","4-hydroxyphenylacetate + H(+) = 4-methylphenol + CO2"],["RHEA%3A56976","4-methylphenol + 2 oxidized [azurin] + H2O = 4-hydroxybenzyl alcohol + 2 reduced [azurin] + 2 H(+)"]],"b":[["mapped/4-Cresol.yaml","4-Cresol"]]},{"id":"CHEBI:18067","l":"phylloquinone","na":11,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_18067","requires phylloquinone"],["EC%3A1.14.14.78","phylloquinone omega-hydroxylase"],["EC%3A1.14.99.20","phylloquinone monooxygenase (2,3-epoxidizing)"],["EC%3A1.17.4.4","vitamin-K-epoxide reductase (warfarin-sensitive)"],["RHEA%3A57744","phylloquinol + [protein]-disulfide = phylloquinone + [protein]-dithiol"],["RHEA%3A16745","phylloquinone + AH2 + O2 = 2,3-epoxyphylloquinone + A + H2O"]],"b":[["mapped/Vitamin_K1.yaml","Vitamin K1"]]},{"id":"CHEBI:18212","l":"selenite(2-)","na":11,"nb":1,"a":[["EC%3A1.97.1.14","selenate reductase (quinol)"],["EC%3A1.97.1.9","selenate reductase (cytochrome c)"],["RHEA%3A80603","selenite + 2 Fe(III)-[cytochrome c] + H2O = 2 Fe(II)-[cytochrome] + selenate + 2 H(+)"],["RHEA%3A34903","selenite + 4 glutathione + 2 H(+) = selenodiglutathione + glutathione disulfide + 3 H2O"],["RHEA%3A14029","selenite + A + H2O = selenate + AH2"],["RHEA%3A51636","selenite + a quinone + H2O = selenate + a quinol"]],"b":[["mapped/Selenite.yaml","Selenite"]]},{"id":"CHEBI:25094","l":"","na":11,"nb":1,"a":[["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A2.A.75","The L-Lysine Exporter (LysE) Family"],["TCDB%3A2.A.124","The Lysine Exporter (LysO) Family"]],"b":[["mapped/Lysine.yaml","Lysine"]]},{"id":"CHEBI:26710","l":"sodium chloride","na":1,"nb":11,"a":[["TCDB%3A2.A.30","The Cation-Chloride Cotransporter (CCC) Family"]],"b":[["mapped/ATCC_Wolfes_Mineral_Mix.yaml","ATCC Wolfe's mineral mix"],["mapped/Brain_Heart_Infusion_Broth.yaml","Brain heart infusion broth"],["mapped/Marine_Broth_2216.yaml","Marine broth 2216"],["mapped/Marine_agar_2216.yaml","Marine agar 2216"],["mapped/Mineral_3B_Solution.yaml","Mineral 3B solution"],["mapped/Mineral_3B_Solution_Minus_Nitrogen.yaml","Mineral 3B solution minus Nitrogen"]]},{"id":"CHEBI:27732","l":"","na":11,"nb":1,"a":[["EC%3A1.14.13.178","methylxanthine N(1)-demethylase"],["EC%3A1.17.5.2","caffeine dehydrogenase"],["EC%3A2.1.1.160","caffeine synthase"],["RHEA%3A10280","1,7-dimethylxanthine + S-adenosyl-L-methionine = caffeine + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A47148","caffeine + a ubiquinone + H2O = 1,3,7-trimethylurate + a ubiquinol"],["RHEA%3A36267","caffeine + NADH + O2 + H(+) = theobromine + formaldehyde + NAD(+) + H2O"]],"b":[["mapped/Caffeine.yaml","Caffeine"]]},{"id":"CHEBI:28591","l":"guaiacol","na":11,"nb":1,"a":[["EC%3A1.11.1.14","lignin peroxidase"],["EC%3A1.11.1.16","versatile peroxidase"],["RHEA%3A48004","1-(3,4-dimethoxyphenyl)-2-(2-methoxyphenoxy)propane-1,3-diol + H2O2 = 3,4-dimethoxybenzaldehyde + guaiacol + glycolaldehyde + H2O"],["RHEA%3A22396","1-(4-hydroxy-3-methoxyphenyl)-2-(2-methoxyphenoxy)propane-1,3-diol + H2O2 = guaiacol + vanillin + glycolaldehyde + H2O"],["RHEA%3A72243","catechol + S-adenosyl-L-methionine = guaiacol + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A72339","guaiacol + Co(I)-[methoxylated-aromatic-compound-specific corrinoid protein] + H(+) = methyl-Co(III)-[methoxylated-aromatic-compound-specific corrinoid protein] + catechol"]],"b":[["mapped/Guaiacol.yaml","Guaiacol"]]},{"id":"CHEBI:28685","l":"molybdenum atom","na":11,"nb":1,"a":[["proteintraitsmech%3ABIOLIP_MO","MO-binding site"],["proteintraitsmech%3AMETALPDB_MO_DINUCLEAR","dinuclear molybdenum site"],["proteintraitsmech%3AMETALPDB_MO_HEPTANUCLEAR","heptanuclear molybdenum site"],["proteintraitsmech%3AMETALPDB_MO_HEXANUCLEAR","hexanuclear molybdenum site"],["proteintraitsmech%3AMETALPDB_MO_MONONUCLEAR","mononuclear molybdenum site"],["proteintraitsmech%3AMETALPDB_MO_MULTINUCLEAR","multinuclear molybdenum site"]],"b":[["mapped/Molybdenum.yaml","Molybdenum"]]},{"id":"CHEBI:15075","l":"selenate","na":10,"nb":1,"a":[["EC%3A1.97.1.14","selenate reductase (quinol)"],["EC%3A1.97.1.9","selenate reductase (cytochrome c)"],["RHEA%3A34887","selenate(in) = selenate(out)"],["RHEA%3A72079","selenate(out) + 3 Na(+)(out) = selenate(in) + 3 Na(+)(in)"],["RHEA%3A34883","selenate(out) + ATP + H2O = selenate(in) + ADP + phosphate + H(+)"],["RHEA%3A80603","selenite + 2 Fe(III)-[cytochrome c] + H2O = 2 Fe(II)-[cytochrome] + selenate + 2 H(+)"]],"b":[["mapped/Selenate.yaml","Selenate"]]},{"id":"CHEBI:15688","l":"acetoin","na":10,"nb":1,"a":[["EC%3A2.2.1.4","acetoin--ribose-5-phosphate transaldolase"],["EC%3A2.3.1.190","acetoin dehydrogenase system"],["RHEA%3A54364","2 acetaldehyde = acetoin"],["RHEA%3A76879","3-aminobutan-2-ol + NAD(+) + H2O = acetoin + NH4(+) + NADH + H(+)"],["RHEA%3A76931","3-aminobutan-2-ol + NADP(+) + H2O = acetoin + NH4(+) + NADPH + H(+)"],["RHEA%3A54368","acetaldehyde + pyruvate + H(+) = acetoin + CO2"]],"b":[["mapped/Acetoin.yaml","Acetoin"]]},{"id":"CHEBI:16383","l":"","na":10,"nb":1,"a":[["EC%3A4.1.1.6","cis-aconitate decarboxylase"],["EC%3A5.3.3.7","aconitate Delta-isomerase"],["RHEA%3A15253","cis-aconitate + H(+) = itaconate + CO2"],["RHEA%3A22144","cis-aconitate + H2O = D-threo-isocitrate"],["RHEA%3A72475","cis-aconitate(in) + citrate(out) = cis-aconitate(out) + citrate(in)"],["RHEA%3A10228","citrate = cis-aconitate + H2O"]],"b":[["mapped/Cis-aconitate.yaml","Cis-aconitate"]]},{"id":"CHEBI:16547","l":"coniferyl aldehyde","na":10,"nb":1,"a":[["EC%3A1.1.1.194","coniferyl-alcohol dehydrogenase"],["EC%3A1.1.1.195","cinnamyl-alcohol dehydrogenase"],["EC%3A1.2.1.44","cinnamoyl-CoA reductase"],["EC%3A1.2.1.68","coniferyl-aldehyde dehydrogenase"],["RHEA%3A23968","(E)-coniferaldehyde + NAD(+) + H2O = (E)-ferulate + NADH + 2 H(+)"],["RHEA%3A64648","(E)-coniferaldehyde + NADP(+) + CoA = (E)-feruloyl-CoA + NADPH + H(+)"]],"b":[["mapped/Coniferyl_Aldehyde.yaml","coniferyl aldehyde"]]},{"id":"CHEBI:17698","l":"chloramphenicol","na":10,"nb":1,"a":[["EC%3A1.14.99.67","alpha-N-dichloroacetyl-p-aminophenylserinol N-oxygenase"],["EC%3A2.3.1.28","chloramphenicol O-acetyltransferase"],["RHEA%3A58884","alpha-N-dichloroacetyl-p-aminophenylserinol + AH2 + 2 O2 = chloramphenicol + A + 2 H2O"],["RHEA%3A18421","chloramphenicol + acetyl-CoA = chloramphenicol 3-acetate + CoA"],["RHEA%3A35287","chloramphenicol(in) + ATP + H2O = chloramphenicol(out) + ADP + phosphate + H(+)"],["RHEA%3A35059","chloramphenicol(in) + H(+)(out) = chloramphenicol(out) + H(+)(in)"]],"b":[["mapped/Chloramphenicol.yaml","Chloramphenicol"]]},{"id":"CHEBI:17745","l":"","na":10,"nb":1,"a":[["EC%3A1.1.1.194","coniferyl-alcohol dehydrogenase"],["EC%3A1.1.1.195","cinnamyl-alcohol dehydrogenase"],["EC%3A2.4.1.111","coniferyl-alcohol glucosyltransferase"],["EC%3A3.2.1.126","coniferin beta-glucosidase"],["RHEA%3A12252","4-O-(beta-D-glucosyl)-(E)-coniferol + H2O = (E)-coniferol + D-glucose"],["RHEA%3A76455","(E)-coniferol + A = (E)-coniferaldehyde + AH2"]],"b":[["mapped/Coniferyl_Alcohol.yaml","coniferyl alcohol"]]},{"id":"CHEBI:28189","l":"","na":10,"nb":1,"a":[["EC%3A3.2.1.10","oligo-1,6-glucosidase"],["EC%3A3.2.1.204","1,3-alpha-isomaltosidase"],["EC%3A3.2.1.205","isomaltose glucohydrolase"],["RHEA%3A52748","alpha-isomaltosyl-(1->3)-isomaltose + H2O = 2 isomaltose"],["RHEA%3A24844","cyclobis-(1->3)-alpha-D-isomaltosyl + 2 H2O = 2 isomaltose"],["RHEA%3A68864","isomaltose + H2O = alpha-D-glucose + D-glucose"]],"b":[["mapped/Isomaltose.yaml","Isomaltose"]]},{"id":"CHEBI:28694","l":"''copper atom''","na":10,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_28694","requires Cu"],["proteintraitsmech%3AMETALPDB_CU_DINUCLEAR","dinuclear copper site"],["proteintraitsmech%3AMETALPDB_CU_HEPTANUCLEAR","heptanuclear copper site"],["proteintraitsmech%3AMETALPDB_CU_HEXANUCLEAR","hexanuclear copper site"],["proteintraitsmech%3AMETALPDB_CU_MONONUCLEAR","mononuclear copper site"],["proteintraitsmech%3AMETALPDB_CU_MULTINUCLEAR","multinuclear copper site"]],"b":[["mapped/Copper.yaml","Copper"]]},{"id":"CHEBI:28940","l":"","na":10,"nb":1,"a":[["EC%3A1.14.14.24","vitamin D 25-hydroxylase"],["EC%3A1.14.15.22","vitamin D 1,25-hydroxylase"],["EC%3A1.17.99.10","steroid C-25 hydroxylase"],["RHEA%3A36411","7-dehydrocholesterol + hnu = calciol"],["RHEA%3A50696","calciol + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = calcidiol + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O"],["RHEA%3A46588","calciol + 2 reduced [adrenodoxin] + O2 + 2 H(+) = calcidiol + 2 oxidized [adrenodoxin] + H2O"]],"b":[["mapped/Vitamin_D3.yaml","Vitamin D3"]]},{"id":"CHEBI:4885","l":"ethionamide","na":10,"nb":1,"a":[["RHEA%3A47616","ethionamide + NADPH + O2 + H(+) = ethionamide S-oxide + NADP(+) + H2O"],["ARO%3A3003456","antibiotic resistant ethA"],["ARO%3A3003457","ethionamide resistant ethA"],["ARO%3A3005103","isoniazid resistant ethA"],["ARO%3A3005105","Mycobacterium tuberculosis ethA mutations conferring resistance to isoniazid"],["ARO%3A3005178","Mycobacterium tuberculosis ethA mutations conferring resistance to perchlozone"]],"b":[["mapped/Ethionamide.yaml","Ethionamide"]]},{"id":"CHEBI:51057","l":"3-phenylpropionate","na":10,"nb":1,"a":[["EC%3A1.14.12.19","3-phenylpropanoate dioxygenase"],["EC%3A1.3.8.15","3-(aryl)acrylate reductase"],["EC%3A3.5.5.1","nitrilase"],["RHEA%3A68904","3-phenylpropanoate + ATP + NADPH + H(+) = 3-phenylpropanal + AMP + diphosphate + NADP(+)"],["RHEA%3A29747","3-phenylpropanoate(in) = 3-phenylpropanoate(out)"],["RHEA%3A50944","3-phenylpropanoate + NAD(+) = (E)-cinnamate + NADH + H(+)"]],"b":[["mapped/3-phenylpropionate.yaml","3-phenylpropionate"]]},{"id":"CHEBI:16813","l":"","na":9,"nb":1,"a":[["EC%3A1.1.1.16","galactitol 2-dehydrogenase"],["EC%3A1.1.1.406","galactitol 2-dehydrogenase (L-tagatose-forming)"],["EC%3A2.7.1.200","protein-N(pi)-phosphohistidine--galactitol phosphotransferase"],["RHEA%3A33143","galactitol(in) = galactitol(out)"],["RHEA%3A37963","galactitol + NAD(+) = D-galactose + NADH + H(+)"],["RHEA%3A20685","galactitol + NAD(+) = keto-D-tagatose + NADH + H(+)"]],"b":[["mapped/Galactitol.yaml","Galactitol"]]},{"id":"CHEBI:17488","l":"","na":9,"nb":1,"a":[["EC%3A1.14.11.60","scopoletin 8-hydroxylase"],["EC%3A2.4.1.128","scopoletin glucosyltransferase"],["RHEA%3A68564","6-methoxycoumarin + reduced [NADPH--hemoprotein reductase] + O2 = scopoletin + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A57860","(E)-6-hydroxyferuloyl-CoA = scopoletin + CoA"],["RHEA%3A68948","esculetin + S-adenosyl-L-methionine = scopoletin + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A57848","scopoletin + 2-oxoglutarate + O2 = fraxetin + succinate + CO2"]],"b":[["mapped/Scopoletin.yaml","Scopoletin"]]},{"id":"CHEBI:18248","l":"iron atom","na":9,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_18248","requires Fe"],["proteintraitsmech%3AMETALPDB_FE_DINUCLEAR","dinuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_HEPTANUCLEAR","heptanuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_HEXANUCLEAR","hexanuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_MONONUCLEAR","mononuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_OCTANUCLEAR","octanuclear iron site"]],"b":[["mapped/Iron.yaml","Iron"]]},{"id":"CHEBI:18333","l":"","na":9,"nb":1,"a":[["EC%3A1.1.1.11","D-arabinitol 4-dehydrogenase"],["EC%3A1.1.1.250","D-arabinitol 2-dehydrogenase"],["EC%3A1.1.1.287","D-arabinitol dehydrogenase (NADP(+))"],["EC%3A1.1.3.40","D-mannitol oxidase"],["RHEA%3A17389","D-arabinitol + NAD(+) = D-ribulose + NADH + H(+)"],["RHEA%3A17921","D-arabinitol + NAD(+) = D-xylulose + NADH + H(+)"]],"b":[["mapped/D-arabitol.yaml","D-arabitol"]]},{"id":"CHEBI:29995","l":"","na":9,"nb":1,"a":[["GO%3A0070335","aspartate binding"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A2.A.81","The Aspartate:Alanine Exchanger (AAEx) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.13","The C4-Dicarboxylate Uptake (Dcu) Family"],["TCDB%3A2.A.23","The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family"]],"b":[["mapped/Aspartate.yaml","Aspartate"]]},{"id":"CHEBI:3098","l":"bile acid","na":9,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.28","The Bile Acid:Na+ Symporter (BASS) Family"],["TCDB%3A1.B.1","The General Bacterial Porin (GBP) Family"],["TCDB%3A9.A.19","The Lipid Intermediate Transporter (Arv1) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"]],"b":[["mapped/Bile_Acid.yaml","Bile Acid"]]},{"id":"CHEBI:12931","l":"D-galactonate","na":8,"nb":1,"a":[["EC%3A3.1.1.25","1,4-lactonase"],["EC%3A4.2.1.140","gluconate/galactonate dehydratase"],["EC%3A4.2.1.6","galactonate dehydratase"],["RHEA%3A18649","D-galactonate = 2-dehydro-3-deoxy-D-galactonate + H2O"],["RHEA%3A29835","D-galactonate(in) + H(+)(in) = D-galactonate(out) + H(+)(out)"],["RHEA%3A44900","D-galactono-1,4-lactone + H2O = D-galactonate + H(+)"]],"b":[["mapped/D-galactonate.yaml","D-galactonate"]]},{"id":"CHEBI:15570","l":"","na":8,"nb":1,"a":[["ARO%3A3004946","cycloserine resistant alr"],["ARO%3A3004939","cycloserine resistant ddlA"],["ARO%3A3004947","Mycobacterium tuberculosis alr with mutation conferring resistance to cycloserine"],["ARO%3A3004941","Mycobacterium tuberculosis ddlA mutations confer resistance to cycloserine"],["TCDB%3A2.A.81","The Aspartate:Alanine Exchanger (AAEx) Family"],["MCSA%3A782","D-stereospecific aminopeptidase (peptidase S12 family)"]],"b":[["mapped/D-Alanine.yaml","D-Alanine"]]},{"id":"CHEBI:15963","l":"","na":8,"nb":1,"a":[["EC%3A1.1.1.56","ribitol 2-dehydrogenase"],["EC%3A3.5.99.1","riboflavinase"],["RHEA%3A47652","D-ribitol 1-phosphate + H2O = ribitol + phosphate"],["RHEA%3A47648","D-ribitol 5-phosphate + H2O = ribitol + phosphate"],["RHEA%3A20053","ribitol + NAD(+) = D-ribulose + NADH + H(+)"],["RHEA%3A59932","ribitol + NADP(+) = D-ribose + NADPH + H(+)"]],"b":[["mapped/Ribitol.yaml","Ribitol"]]},{"id":"CHEBI:16164","l":"","na":8,"nb":1,"a":[["EC%3A1.13.11.35","pyrogallol 1,2-oxygenase"],["EC%3A1.97.1.2","pyrogallol hydroxytransferase"],["EC%3A4.1.1.59","gallate decarboxylase"],["RHEA%3A21000","1,2,3,5-tetrahydroxybenzene + 1,2,3-trihydroxybenzene = 1,2,3,5-tetrahydroxybenzene + 1,3,5-trihydroxybenzene"],["RHEA%3A19673","1,2,3-trihydroxybenzene + O2 = (2Z,4E)-2-hydroxyhexa-2,4-dienedioate + 2 H(+)"],["RHEA%3A12749","3,4,5-trihydroxybenzoate + H(+) = 1,2,3-trihydroxybenzene + CO2"]],"b":[["mapped/Pyrogallol.yaml","Pyrogallol"]]},{"id":"CHEBI:16397","l":"","na":8,"nb":1,"a":[["EC%3A3.5.1.49","formamidase"],["EC%3A3.5.3.8","formimidoylglutamase"],["EC%3A4.2.1.66","cyanide hydratase"],["RHEA%3A21948","formamide + H2O = formate + NH4(+)"],["RHEA%3A21720","formamide = hydrogen cyanide + H2O"],["RHEA%3A74387","formamide(out) = formamide(in)"]],"b":[["mapped/Formamide.yaml","Formamide"]]},{"id":"CHEBI:16634","l":"raffinose","na":8,"nb":1,"a":[["EC%3A2.4.1.166","raffinose--raffinose alpha-galactosyltransferase"],["EC%3A2.4.1.67","galactinol--raffinose galactosyltransferase"],["EC%3A2.4.1.82","galactinol--sucrose galactosyltransferase"],["RHEA%3A14125","2 raffinose = 1(F)-alpha-D-galactosylraffinose + sucrose"],["RHEA%3A20776","alpha-D-galactosyl-(1->3)-1D-myo-inositol + raffinose = stachyose + myo-inositol"],["RHEA%3A20161","alpha-D-galactosyl-(1->3)-1D-myo-inositol + sucrose = raffinose + myo-inositol"]],"b":[["mapped/Raffinose.yaml","Raffinose"]]},{"id":"CHEBI:17464","l":"","na":8,"nb":1,"a":[["EC%3A1.1.1.316","L-galactose 1-dehydrogenase"],["EC%3A1.3.2.3","L-galactonolactone dehydrogenase"],["EC%3A1.3.3.12","L-galactonolactone oxidase"],["RHEA%3A14757","L-galactono-1,4-lactone + 2 Fe(III)-[cytochrome c] = L-ascorbate + 2 Fe(II)-[cytochrome c] + 3 H(+)"],["RHEA%3A32367","L-galactono-1,4-lactone + 4 Fe(III)-[cytochrome c] = L-dehydroascorbate + 4 Fe(II)-[cytochrome c] + 5 H(+)"],["RHEA%3A75231","L-galactono-1,4-lactone + H2O = L-galactonate + H(+)"]],"b":[["mapped/L-galactonic_Acid_Gamma-lactone.yaml","L-galactonic Acid Gamma-lactone"]]},{"id":"CHEBI:17871","l":"","na":8,"nb":1,"a":[["EC%3A1.1.1.202","1,3-propanediol dehydrogenase"],["EC%3A4.2.1.30","glycerol dehydratase"],["RHEA%3A62920","1alpha,25-dihydroxy-2beta-(1,3-dihydroxypropoxy)-cholecalciferol = 1alpha,2beta,25-trihydroxycholecalciferol + 3-hydroxypropanal"],["RHEA%3A59432","3-hydroxypropanal + NAD(+) + H2O = 3-hydroxypropanoate + NADH + 2 H(+)"],["RHEA%3A59428","3-hydroxypropanal + NADP(+) + H2O = 3-hydroxypropanoate + NADPH + 2 H(+)"],["RHEA%3A19765","glycerol = 3-hydroxypropanal + H2O"]],"b":[["mapped/3-Hydroxypropanal.yaml","3-Hydroxypropanal"]]},{"id":"CHEBI:18403","l":"L-arabinitol","na":8,"nb":1,"a":[["EC%3A1.1.1.12","L-arabinitol 4-dehydrogenase"],["EC%3A1.1.1.13","L-arabinitol 2-dehydrogenase"],["EC%3A1.1.1.21","aldose reductase"],["RHEA%3A25225","L-arabinitol + NAD(+) = L-arabinose + NADH + H(+)"],["RHEA%3A21356","L-arabinitol + NAD(+) = L-ribulose + NADH + H(+)"],["RHEA%3A16381","L-arabinitol + NAD(+) = L-xylulose + NADH + H(+)"]],"b":[["mapped/Arabitol.yaml","Arabitol"]]},{"id":"CHEBI:27949","l":"(E)-sinapaldehyde","na":8,"nb":1,"a":[["EC%3A1.1.1.195","cinnamyl-alcohol dehydrogenase"],["RHEA%3A72027","(E)-sinapaldehyde + L-proline = (E)-nesocodin (alcohol-form) + H2O"],["RHEA%3A64656","(E)-sinapaldehyde + NADP(+) + CoA = (E)-sinapoyl-CoA + NADPH + H(+)"],["RHEA%3A57712","(E)-sinapaldehyde + UDP-alpha-D-glucose = 4-O-(beta-D-glucosyl)-4-trans-sinapoyl aldehyde + UDP + H(+)"],["RHEA%3A76459","(E)-sinapyl alcohol + A = (E)-sinapaldehyde + AH2"],["RHEA%3A45704","(E)-sinapyl alcohol + NADP(+) = (E)-sinapaldehyde + NADPH + H(+)"]],"b":[["mapped/Sinapinaldehyde.yaml","sinapinaldehyde"]]},{"id":"CHEBI:28644","l":"2-oxopentanoate","na":8,"nb":1,"a":[["RHEA%3A50312","2-oxopentanoate + H(+) = butanal + CO2"],["RHEA%3A66080","2-oxopentanoate + L-kynurenine = L-2-aminopentanoate + 4-(2-aminophenyl)-2,4-dioxobutanoate"],["RHEA%3A66076","2-oxopentanoate + L-kynurenine = L-2-aminopentanoate + kynurenate + H2O"],["RHEA%3A77359","2-oxopentanoate + N(omega),N(omega)-dimethyl-L-arginine = 5-(3,3-dimethylguanidino)-2-oxopentanoate + L-2-aminopentanoate"],["RHEA%3A82487","(2R)-hydroxypentanoate + FAD + H(+) = 2-oxopentanoate + FADH2"],["RHEA%3A37035","L-2-aminopentanoate + NAD(+) + H2O = 2-oxopentanoate + NH4(+) + NADH + H(+)"]],"b":[["mapped/2-oxopentanoate.yaml","2-oxopentanoate"]]},{"id":"CHEBI:48944","l":"","na":8,"nb":1,"a":[["EC%3A2.7.2.14","branched-chain-fatty-acid kinase"],["RHEA%3A80347","(1R,2R,3S,8R,10R,11R,15S,16S)-3-(acetyloxy)-15-[(4R)-4-[(2S)-3,3-dimethyloxiran-2-yl]-1,4-dihydroxybutan-2-yl]-2,7,7,11,16-pentamethyl-5-oxo-6-oxatetracyclo[9.7.0.0(2,8).0(12,16)]octadec-12-en-10-yl acetate + reduced [NADPH--hemoprotein reductase] + O2 = (1R,2R,3S,8R,10R,11R,15S,16S)-3-(acetyloxy)-15-(1-hydroxy-4-oxobutan-2-yl)-2,7,7,11,16-pentamethyl-5-oxo-6-oxatetracyclo[9.7.0.0(2,8).0(12,16)]octadec-12-en-10-yl acetate + 2-methylpropanoate + oxidized [NADPH--hemoprotein reductase] + H2O + 2 H(+)"],["RHEA%3A80351","(1S,3bR,4R,5aR,9aR,9bR,11aS)-1-[(4R)-5-[(2S)-3,3-dimethyloxiran-2-yl]-1,4-dihydroxybutan-2-yl]-3b,6,6,9a,11a-pentamethyl-7-oxo-1H,2H,3bH,4H,5H,5aH,6H,7H,9aH,9bH,10H,11H,11aH-cyclopenta[a]phenanthren-4-yl acetate + reduced [NADPH--hemoprotein reductase] + O2 = (1S,3bR,4R,5aR,9aR,9bR,11aS)-1-(1-hydroxy-4-oxobutan-2-yl)-3b,6,6,9a,11a-pentamethyl-7-oxo-1H,2H,3bH,4H,5H,5aH,6H,7H,9aH,9bH,10H,11H,11aH-cyclopenta[a]phenanthren-4-yl acetate + 2-methylpropanoate + oxidized [NADPH--hemoprotein reductase] + H2O + 2 H(+)"],["RHEA%3A42576","2-hydroxy-7-methyl-6-oxo-(2E,4E)-octadienoate + H2O = 2-oxopent-4-enoate + 2-methylpropanoate + H(+)"],["RHEA%3A24156","2-methylpropanoate + ATP = 2-methylpropanoyl phosphate + ADP"],["RHEA%3A46176","2-methylpropanoate + ATP + CoA = 2-methylpropanoyl-CoA + AMP + diphosphate"]],"b":[["mapped/Isobutyrate.yaml","Isobutyrate"]]},{"id":"CHEBI:53071","l":"L-galactonate","na":8,"nb":1,"a":[["EC%3A1.1.1.365","D-galacturonate reductase"],["EC%3A1.1.1.414","L-galactonate 5-dehydrogenase"],["EC%3A4.2.1.146","L-galactonate dehydratase"],["RHEA%3A38103","L-galactonate = 2-dehydro-3-deoxy-L-galactonate + H2O"],["RHEA%3A28823","L-galactonate(in) + H(+)(in) = L-galactonate(out) + H(+)(out)"],["RHEA%3A30183","L-galactonate + NAD(+) = keto-D-tagaturonate + NADH + H(+)"]],"b":[["mapped/L-galactonate.yaml","L-galactonate"]]},{"id":"CHEBI:6030","l":"isoniazide","na":8,"nb":1,"a":[["ARO%3A3004266","antibiotic resistant katG"],["ARO%3A3003416","isoniazid resistant katG"],["ARO%3A3003392","Mycobacterium tuberculosis katG mutations conferring resistance to isoniazid"],["ARO%3A3005102","Mycobacterium tuberculosis katG mutations conferring resistance to prothionamide"],["ARO%3A3005101","prothionamide resistant katG"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"]],"b":[["mapped/Isoniazid.yaml","Isoniazid"]]},{"id":"CHEBI:15226","l":"","na":7,"nb":1,"a":[["EC%3A1.8.2.2","thiosulfate dehydrogenase"],["EC%3A1.8.5.2","thiosulfate dehydrogenase (quinone)"],["RHEA%3A20549","2 thiosulfate + 2 Fe(III)-[cytochrome c] = tetrathionate + 2 Fe(II)-[cytochrome c] + 2 H(+)"],["RHEA%3A10936","6-decylubiquinone + 2 thiosulfate = 6-decylubiquinol + tetrathionate"],["RHEA%3A13541","tetrathionate + H2O = sulfur + thiosulfate + sulfate + H(+)"],["TCDB%3A5.A.3","The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family"]],"b":[["mapped/Tetrathionate.yaml","Tetrathionate"]]},{"id":"CHEBI:15837","l":"isoamylol","na":7,"nb":1,"a":[["EC%3A1.1.1.265","3-methylbutanal reductase"],["EC%3A3.1.1.112","isoamyl acetate esterase"],["RHEA%3A65236","3-methylbutan-1-ol + acetyl-CoA = 3-methylbutyl acetate + CoA"],["RHEA%3A85967","3-methylbutan-1-ol + hexadecanoyl-CoA = 3-methylbutyl hexadecanoate + CoA"],["RHEA%3A18529","3-methylbutan-1-ol + NAD(+) = 3-methylbutanal + NADH + H(+)"],["RHEA%3A18525","3-methylbutan-1-ol + NADP(+) = 3-methylbutanal + NADPH + H(+)"]],"b":[["mapped/3-methyl-1-butanol.yaml","3-methyl-1-butanol"]]},{"id":"CHEBI:16118","l":"berberine","na":7,"nb":1,"a":[["EC%3A1.21.3.2","columbamine oxidase"],["EC%3A1.3.3.8","tetrahydroberberine oxidase"],["EC%3A1.5.1.31","berberine reductase"],["RHEA%3A23564","2 columbamine + O2 = 2 berberine + 2 H2O"],["RHEA%3A21268","(R)-canadine + 2 NADP(+) = berberine + 2 NADPH + H(+)"],["RHEA%3A13489","(S)-canadine + 2 O2 + H(+) = berberine + 2 H2O2"]],"b":[["mapped/Berberine.yaml","Berberine"]]},{"id":"CHEBI:16737","l":"creatinine","na":7,"nb":1,"a":[["EC%3A3.5.2.10","creatininase"],["EC%3A3.5.4.21","creatinine deaminase"],["RHEA%3A14533","creatinine + H2O = creatine"],["RHEA%3A12681","creatinine + H2O + H(+) = N-methylhydantoin + NH4(+)"],["RHEA%3A74539","creatinine(in) = creatinine(out)"],["RHEA%3A72183","creatinine(in) + H(+)(out) = creatinine(out) + H(+)(in)"]],"b":[["mapped/Creatinine.yaml","Creatinine"]]},{"id":"CHEBI:16892","l":"","na":7,"nb":1,"a":[["EC%3A2.7.1.49","hydroxymethylpyrimidine kinase"],["EC%3A3.5.99.2","aminopyrimidine aminohydrolase"],["RHEA%3A31799","4-amino-5-aminomethyl-2-methylpyrimidine + H2O = 4-amino-5-hydroxymethyl-2-methylpyrimidine + NH4(+)"],["RHEA%3A23096","4-amino-5-hydroxymethyl-2-methylpyrimidine + ATP = 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine + ADP + H(+)"],["RHEA%3A17509","thiamine + H2O = 5-(2-hydroxyethyl)-4-methylthiazole + 4-amino-5-hydroxymethyl-2-methylpyrimidine + H(+)"],["MCSA%3A670","hydroxymethylpyrimidine kinase"]],"b":[["mapped/4-Amino-5-hydroxymethyl-2-methylpyrimidine.yaml","4-Amino-5-hydroxymethyl-2-methylpyrimidine"]]},{"id":"CHEBI:16997","l":"","na":7,"nb":1,"a":[["EC%3A1.1.1.55","lactaldehyde reductase (NADPH)"],["EC%3A4.2.1.28","propanediol dehydratase"],["RHEA%3A56584","1,2-epoxypropane + H2O = propane-1,2-diol"],["RHEA%3A15885","propane-1,2-diol + NADP(+) = (S)-lactaldehyde + NADPH + H(+)"],["RHEA%3A14569","propane-1,2-diol = propanal + H2O"],["TCDB%3A1.S.4","The Bacterial Microcompartment Shell/Pore-forming Protein-4 (BMC-SP4) Family"]],"b":[["mapped/12-Propanediol.yaml","1,2-Propanediol"]]},{"id":"CHEBI:17113","l":"","na":7,"nb":1,"a":[["EC%3A2.7.1.215","erythritol kinase (D-erythritol 1-phosphate-forming)"],["EC%3A2.7.1.27","erythritol kinase (D-erythritol 4-phosphate-forming)"],["RHEA%3A49624","erythritol + ATP = D-erythritol 1-phosphate + ADP + H(+)"],["RHEA%3A20708","erythritol + ATP = D-erythritol 4-phosphate + ADP + H(+)"],["RHEA%3A48756","erythritol + NAD(+) = D-erythrulose + NADH + H(+)"],["RHEA%3A59928","erythritol + NADP(+) = D-erythrose + NADPH + H(+)"]],"b":[["mapped/Meso-Erythritol.yaml","meso-Erythritol"]]},{"id":"CHEBI:17634","l":"D-glucose","na":1,"nb":7,"a":[["MCSA%3A976","α‑glucosidase maltase-glucoamylase"]],"b":[["mapped/Brain_Heart_Infusion_Broth.yaml","Brain heart infusion broth"],["mapped/D-glucose.yaml","D-Glucose"],["mapped/Dextrose.yaml","Dextrose"],["mapped/Glucose_Acetate.yaml","Glucose + Acetate"],["mapped/Glucose_Cellobiose_Starch_Trypticase_Yeast_Extract.yaml","Glucose + Cellobiose + Starch + Trypticase + Yeast Extract"],["mapped/Glucose_Formate.yaml","Glucose + Formate"]]},{"id":"CHEBI:1883","l":"","na":7,"nb":1,"a":[["EC%3A1.13.11.94","4-vinylguaiacol dioxygenase"],["EC%3A4.1.1.102","phenacrylate decarboxylase"],["RHEA%3A70603","4-vinylphenol + NADH + H(+) = 4-ethylphenol + NAD(+)"],["RHEA%3A80571","4-vinylphenol + O2 = 4-hydroxybenzaldehyde + formaldehyde"],["RHEA%3A86075","4-vinylphenol + S-adenosyl-L-methionine = 4-vinylanisole + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A33227","(E)-4-coumarate + H(+) = 4-vinylphenol + CO2"]],"b":[["mapped/4-vinylphenol.yaml","4-vinylphenol"]]},{"id":"CHEBI:30742","l":"ethylene glycol","na":7,"nb":1,"a":[["EC%3A3.1.1.102","mono(ethylene terephthalate) hydrolase"],["RHEA%3A42648","(2,5-ethylene furandicarboxylate)(n) + 2 H2O = (2,5-ethylene furandicarboxylate)(n-1) + 2,5-dicarboxyfuran + ethylene glycol + 2 H(+)"],["RHEA%3A49532","4-[(2-hydroxyethoxy)carbonyl]benzoate + H2O = terephthalate + ethylene glycol + H(+)"],["RHEA%3A80759","bis(2-hydroxyethyl) terephthalate + H2O = 4-[(2-hydroxyethoxy)carbonyl]benzoate + ethylene glycol + H(+)"],["RHEA%3A27630","ethylene glycol + NAD(+) = glycolaldehyde + NADH + H(+)"],["MCSA%3A847","epoxide hydrolase"]],"b":[["mapped/Ethylene_Glycol.yaml","Ethylene glycol"]]},{"id":"CHEBI:50205","l":"","na":7,"nb":1,"a":[["EC%3A4.1.2.61","feruloyl-CoA hydratase/lyase"],["RHEA%3A36311","3,4-dihydroxybenzaldehyde + NAD(+) + H2O = 3,4-dihydroxybenzoate + NADH + 2 H(+)"],["RHEA%3A72539","3,4-dihydroxybenzaldehyde + NADP(+) + H2O = 3,4-dihydroxybenzoate + NADPH + 2 H(+)"],["RHEA%3A63188","3,4-dihydroxybenzaldehyde + tyramine + AH2 = norbelladine + A + H2O"],["RHEA%3A62428","3-hydroxy-3-(3,4-dihydroxyphenyl)propanoyl-CoA = 3,4-dihydroxybenzaldehyde + acetyl-CoA"],["RHEA%3A36307","(E)-caffeoyl-CoA + H2O = 3,4-dihydroxybenzaldehyde + acetyl-CoA"]],"b":[["mapped/Protocatechualdehyde.yaml","Protocatechualdehyde"]]},{"id":"CHEBI:62974","l":"","na":7,"nb":1,"a":[["RHEA%3A84443","D-cellotetraose = beta-D-glucosyl-(1->4)-beta-D-glucosyl-(1->4)-beta-D-glucosyl-(1->4)-D-mannopyranose"],["RHEA%3A59660","D-cellotetraose + O2 = D-cellotetraono-1,5-lactone + H2O2"],["MCSA%3A560","cellulase (GH12)"],["MCSA%3A561","cellulase (GH45)"],["MCSA%3A559","cellulase (GH9)"],["MCSA%3A440","cellulose 1,4-beta-cellobiosidase (non-reducing end)"]],"b":[["mapped/Cellotetraose.yaml","Cellotetraose"]]},{"id":"CHEBI:9349","l":"","na":7,"nb":1,"a":[["EC%3A1.14.13.245","assimilatory dimethylsulfide S-monooxygenase"],["EC%3A1.14.14.35","dimethylsulfone monooxygenase"],["EC%3A1.8.1.17","dimethylsulfone reductase"],["RHEA%3A50716","dimethyl sulfone + FMNH2 + O2 = methanesulfinate + FMN + formaldehyde + H2O + 2 H(+)"],["RHEA%3A30219","dimethyl sulfoxide + NAD(+) + H2O = dimethyl sulfone + NADH + H(+)"],["RHEA%3A57956","dimethyl sulfoxide + NADH + O2 + H(+) = dimethyl sulfone + NAD(+) + H2O"]],"b":[["mapped/Dimethyl_Sulfone.yaml","dimethyl sulfone"]]},{"id":"CHEBI:15399","l":"(+)-carvone","na":6,"nb":1,"a":[["EC%3A1.1.1.275","(+)-trans-carveol dehydrogenase"],["EC%3A1.1.1.n4","(-)-trans-carveol dehydrogenase"],["EC%3A1.3.99.25","carvone reductase"],["RHEA%3A32427","(1R,4S)-isodihydrocarvone + A = (S)-carvone + AH2"],["RHEA%3A14825","(1R,5S)-carveol + NAD(+) = (S)-carvone + NADH + H(+)"],["RHEA%3A25848","(1S,5S)-carveol + NAD(+) = (S)-carvone + NADH + H(+)"]],"b":[["mapped/D_-carvone.yaml","D(+)-Carvone"]]},{"id":"CHEBI:15409","l":"","na":6,"nb":1,"a":[["EC%3A1.1.1.207","(-)-menthol dehydrogenase"],["EC%3A1.14.13.46","(-)-menthol monooxygenase"],["EC%3A2.4.1.127","monoterpenol beta-glucosyltransferase"],["RHEA%3A13917","(-)-menthol + NADP(+) = (1R,4S)-menthone + NADPH + H(+)"],["RHEA%3A11648","(-)-menthol + NADPH + O2 + H(+) = 1,4-menthane-3,8-diol + NADP(+) + H2O"],["RHEA%3A11520","(-)-menthol + UDP-alpha-D-glucose = (-)-menthyl beta-D-glucoside + UDP + H(+)"]],"b":[["mapped/Levomenthol.yaml","Levomenthol"]]},{"id":"CHEBI:15978","l":"sn-glycerol 3-phosphate","na":1,"nb":6,"a":[["proteintraitsmech%3ABIOLIP_G3P","G3P-binding site"]],"b":[["mapped/Glycerol_2.yaml","glycerol"],["mapped/Glycerol_3-phosphate.yaml","Glycerol 3-phosphate"],["mapped/Na2_Beta-glycerol_PO4_X_5_H2O.yaml","Na2 beta-glycerol PO4 x 5 H2O"],["mapped/Na2glycerophosphate5h2o.yaml","Na2glycerophosphate•5H2O"],["mapped/Sn-Glycerol_3-phosphate_Lithium_Salt.yaml","sn-Glycerol 3-phosphate lithium salt"],["mapped/Sn-glycerol_3-phosphate_Bis_Cyclohexylammonium_Salt.yaml","sn-Glycerol 3-phosphate bis(cyclohexylammonium) salt"]]},{"id":"CHEBI:16457","l":"S,S-dimethyl-beta-propiothetin","na":6,"nb":1,"a":[["EC%3A2.1.1.269","dimethylsulfoniopropionate demethylase"],["EC%3A4.4.1.3","dimethylpropiothetin dethiomethylase"],["RHEA%3A35467","S,S-dimethyl-beta-propiothetin + (6S)-5,6,7,8-tetrahydrofolate = 3-(methylsulfanyl)propanoate + (6S)-5-methyl-5,6,7,8-tetrahydrofolate + H(+)"],["RHEA%3A19965","S,S-dimethyl-beta-propiothetin = acrylate + dimethyl sulfide + H(+)"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.15","The Betaine/Carnitine/Choline Transporter (BCCT) Family"]],"b":[["mapped/Dimethylsulfoniopropionate_Hydrochloride.yaml","Dimethylsulfoniopropionate hydrochloride"]]},{"id":"CHEBI:16583","l":"","na":6,"nb":1,"a":[["EC%3A1.1.1.303","diacetyl reductase [(R)-acetoin forming]"],["EC%3A1.1.1.304","diacetyl reductase [(S)-acetoin forming]"],["RHEA%3A35607","acetoin + NADP(+) = diacetyl + NADPH + H(+)"],["RHEA%3A22900","(R)-acetoin + NAD(+) = diacetyl + NADH + H(+)"],["RHEA%3A27286","(S)-acetoin + NAD(+) = diacetyl + NADH + H(+)"],["proteintraitsmech%3ABIOLIP_BUO","BUO-binding site"]],"b":[["mapped/Diacetyl.yaml","Diacetyl"]]},{"id":"CHEBI:16719","l":"","na":6,"nb":1,"a":[["EC%3A1.1.1.168","2-dehydropantolactone reductase (Re-specific)"],["EC%3A1.1.1.214","2-dehydropantolactone reductase (Si-specific)"],["EC%3A1.1.1.358","2-dehydropantolactone reductase"],["EC%3A1.1.99.27","(R)-pantolactone dehydrogenase (flavin)"],["RHEA%3A21004","(R)-pantolactone + A = 2-dehydropantolactone + AH2"],["RHEA%3A18981","(R)-pantolactone + NADP(+) = 2-dehydropantolactone + NADPH + H(+)"]],"b":[["mapped/D-_-pantolactone.yaml","D-(-)-Pantolactone"]]},{"id":"CHEBI:17276","l":"","na":6,"nb":1,"a":[["EC%3A2.4.1.357","phlorizin synthase"],["EC%3A3.7.1.4","phloretin hydrolase"],["RHEA%3A23396","phloretin + H2O = phloretate + 1,3,5-trihydroxybenzene + H(+)"],["RHEA%3A51576","phloretin + UDP-alpha-D-glucose = phlorizin + UDP + H(+)"],["RHEA%3A65148","phloretin + UDP-alpha-D-glucose = trilobatin + UDP + H(+)"],["RHEA%3A69639","phlorizin + H2O = phloretin + beta-D-glucose"]],"b":[["mapped/Phloretin.yaml","Phloretin"]]},{"id":"CHEBI:17489","l":"","na":6,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_17489","requires cAMP"],["ARO%3A3004251","antibiotic-resistant cya adenylate cyclase"],["ARO%3A3004250","antibiotic-resistant ptsI phosphotransferase"],["ARO%3A3003900","Escherichia coli cyaA with mutation conferring resistance to fosfomycin"],["ARO%3A3003899","Escherichia coli PtsI with mutation conferring resistance to fosfomycin"],["proteintraitsmech%3ABIOLIP_CMP","CMP-binding site"]],"b":[["mapped/Adenosine_35-Cyclic_Monophosphate.yaml","Adenosine 3,5-Cyclic Monophosphate"]]},{"id":"CHEBI:17580","l":"linalool","na":6,"nb":1,"a":[["EC%3A1.14.14.84","linalool 8-monooxygenase"],["EC%3A5.4.4.8","linalool isomerase"],["RHEA%3A68708","(2E)-geranyl diphosphate + H2O = linalool + diphosphate"],["RHEA%3A32635","linalool + 2 reduced [NADPH--hemoprotein reductase] + 2 O2 = (6E)-8-oxolinalool + 2 oxidized [NADPH--hemoprotein reductase] + 3 H2O + 2 H(+)"],["RHEA%3A54656","linalool = (2E)-geraniol"],["RHEA%3A32503","linalool + reduced [NADPH--hemoprotein reductase] + O2 = (6E)-8-hydroxylinalool + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"]],"b":[["mapped/Linalool.yaml","Linalool"]]},{"id":"CHEBI:18246","l":"(1->4)-beta-D-glucan","na":6,"nb":1,"a":[["EC%3A2.4.1.12","cellulose synthase (UDP-forming)"],["EC%3A2.4.1.29","cellulose synthase (GDP-forming)"],["EC%3A2.4.1.49","cellodextrin phosphorylase"],["RHEA%3A17797","[(1->4)-beta-D-glucosyl](n) + GDP-alpha-D-glucose = [(1->4)-beta-D-glucosyl](n+1) + GDP + H(+)"],["RHEA%3A23024","[(1->4)-beta-D-glucosyl](n) + phosphate = [(1->4)-beta-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate"],["RHEA%3A19929","[(1->4)-beta-D-glucosyl](n) + UDP-alpha-D-glucose = [(1->4)-beta-D-glucosyl](n+1) + UDP + H(+)"]],"b":[["mapped/Cellulose.yaml","Cellulose"]]},{"id":"CHEBI:22653","l":"asparagine","na":6,"nb":1,"a":[["TCDB%3A2.A.25","The Alanine or Glycine:Cation Symporter (AGCS) Family"],["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.13","The C4-Dicarboxylate Uptake (Dcu) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"]],"b":[["mapped/Asparagine.yaml","Asparagine"]]},{"id":"CHEBI:28053","l":"melibiose","na":6,"nb":1,"a":[["RHEA%3A28663","melibiose + H2O = D-galactose + D-glucose"],["RHEA%3A28855","melibiose(in) + H(+)(in) = melibiose(out) + H(+)(out)"],["RHEA%3A28847","melibiose(in) + Li(+)(in) = melibiose(out) + Li(+)(out)"],["RHEA%3A28851","melibiose(in) + Na(+)(in) = melibiose(out) + Na(+)(out)"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["MCSA%3A913","alpha-galactosidase"]],"b":[["mapped/Melibiose.yaml","Melibiose"]]},{"id":"CHEBI:28903","l":"","na":6,"nb":1,"a":[["RHEA%3A38223","decan-1-ol + (9Z)-octadecenoyl-CoA = decyl (9Z)-octadecenoate + CoA"],["RHEA%3A44096","decan-1-ol + hexadecanoyl-CoA = decyl hexadecanoate + CoA"],["RHEA%3A58376","decan-1-ol + NADP(+) = decanal + NADPH + H(+)"],["RHEA%3A69496","decan-1-ol + O2 = decanal + H2O2"],["RHEA%3A76755","decan-1-ol + reduced [NADPH--hemoprotein reductase] + O2 = 1,3-decanediol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A76775","decan-1-ol + reduced [NADPH--hemoprotein reductase] + O2 = 1,7-decanediol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"]],"b":[["mapped/Decyl_Alcohol.yaml","decyl alcohol"]]},{"id":"CHEBI:28911","l":"cob(III)alamin","na":6,"nb":1,"a":[["RHEA%3A81907","(2R,3R,5R)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + methylcob(III)alamin + S-adenosyl-L-methionine = (2R,3R,5S,6R)-6-(methyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A81911","(2R,3R,5S,6R)-6-(methyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + methylcob(III)alamin + S-adenosyl-L-methionine = (2R,3R,5S,6R)-6-(ethyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A76471","cob(III)alamin + AH2 = cob(I)alamin + A + 2 H(+)"],["RHEA%3A81883","cytidine 5'-{[hydroxy(2-hydroxyethyl)phosphonoyl]phosphate} + methylcob(III)alamin + S-adenosyl-L-methionine = cytidine 5'-({hydroxy[(S)-2-hydroxypropyl]phosphonoyl}phosphate) + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A77223","gentamicin X2 + methylcob(III)alamin + S-adenosyl-L-methionine = geneticin + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A81891","N-acetyl-demethyl-L-phosphinothricin + methylcob(III)alamin + S-adenosyl-L-methionine = N-acetyl-L-phosphinothricin + cob(III)alamin + 5'-deoxyadenosine + L-methionine"]],"b":[["mapped/Cobalamine.yaml","Cobalamine"]]},{"id":"CHEBI:28997","l":"","na":6,"nb":1,"a":[["EC%3A3.5.4.4","adenosine deaminase"],["RHEA%3A28190","2'-deoxyadenosine + H2O + H(+) = 2'-deoxyinosine + NH4(+)"],["RHEA%3A29971","2'-deoxyinosine(in) + H(+)(in) = 2'-deoxyinosine(out) + H(+)(out)"],["RHEA%3A27750","2'-deoxyinosine + phosphate = 2-deoxy-alpha-D-ribose 1-phosphate + hypoxanthine"],["RHEA%3A29383","dIMP + H2O = 2'-deoxyinosine + phosphate"],["RHEA%3A69572","dIMP + inosine = 2'-deoxyinosine + IMP"]],"b":[["mapped/2-deoxyinosine.yaml","2'-Deoxyinosine"]]},{"id":"CHEBI:3020","l":"","na":6,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.117","The Chlorhexadine Exporter (CHX) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/Benzalkonium_Chloride.yaml","Benzalkonium Chloride"]]},{"id":"CHEBI:30477","l":"","na":6,"nb":1,"a":[["EC%3A2.1.1.265","tellurite methyltransferase"],["RHEA%3A68940","tellurite(in) + Na(+)(in) = tellurite(out) + Na(+)(out)"],["RHEA%3A34539","tellurite + S-adenosyl-L-methionine = methanetellurite + S-adenosyl-L-homocysteine"],["TCDB%3A2.A.20","The Inorganic Phosphate Transporter (PiT) Family"],["TCDB%3A2.A.21","The Solute:Sodium Symporter (SSS) Family"],["TCDB%3A2.A.16","The Telurite-resistance/Dicarboxylate Transporter (TDT) Family"]],"b":[["mapped/Tellurite.yaml","Tellurite"]]},{"id":"CHEBI:310312","l":"","na":6,"nb":1,"a":[["EC%3A2.1.1.154","isoliquiritigenin 2'-O-methyltransferase"],["EC%3A2.3.1.170","6'-deoxychalcone synthase"],["RHEA%3A10584","4-coumaroyl-CoA + 3 malonyl-CoA + NADPH + 4 H(+) = isoliquiritigenin + 3 CO2 + NADP(+) + 4 CoA + H2O"],["RHEA%3A79903","isoliquiritigenin = (2S)-liquiritigenin"],["RHEA%3A21608","isoliquiritigenin + S-adenosyl-L-methionine = 2'-O-methylisoliquiritigenin + S-adenosyl-L-homocysteine + H(+)"],["proteintraitsmech%3ABIOLIP_HCC","HCC-binding site"]],"b":[["mapped/Isoliquiritigenin.yaml","Isoliquiritigenin"]]},{"id":"CHEBI:46502","l":"tungstate","na":6,"nb":1,"a":[["EC%3A7.3.2.6","ABC-type tungstate transporter"],["RHEA%3A35295","adenylyl-molybdopterin + tungstate = W-molybdopterin cofactor + AMP + H(+)"],["RHEA%3A35027","tungstate(in) + ATP + H2O = tungstate(out) + ADP + phosphate + H(+)"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.47","The Divalent Anion:Na+ Symporter (DASS) Family"],["proteintraitsmech%3ABIOLIP_WO4","WO4-binding site"]],"b":[["mapped/Tungstate.yaml","Tungstate"]]},{"id":"CHEBI:4883","l":"ethidium bromide","na":6,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A1.A.7","The ATP-gated P2X Receptor Cation Channel (P2X Receptor) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/Ethidium_Bromide.yaml","Ethidium Bromide"]]},{"id":"CHEBI:4917","l":"eugenol","na":6,"nb":1,"a":[["EC%3A1.1.1.318","eugenol synthase"],["EC%3A2.1.1.146","(iso)eugenol O-methyltransferase"],["RHEA%3A32655","eugenol + a carboxylate + NADP(+) = a coniferyl ester + NADPH"],["RHEA%3A24690","eugenol + acetate + NADP(+) = (E)-coniferyl acetate + NADPH"],["RHEA%3A80551","eugenol + S-adenosyl-L-methionine = O-methyleugenol + S-adenosyl-L-homocysteine + H(+)"],["proteintraitsmech%3ABIOLIP_EOL","EOL-binding site"]],"b":[["mapped/Eugenol.yaml","Eugenol"]]},{"id":"CHEBI:16689","l":"D-apiose","na":5,"nb":1,"a":[["EC%3A1.1.1.114","apiose 1-reductase"],["EC%3A5.3.1.36","D-apiose isomerase"],["RHEA%3A56996","aldehydo-D-apiose = apulose"],["RHEA%3A57040","aldehydo-D-apiose = D-apiofuranose"],["RHEA%3A15301","D-apiitol + NAD(+) = aldehydo-D-apiose + NADH + H(+)"]],"b":[["mapped/D-apiose.yaml","D-apiose"]]},{"id":"CHEBI:16865","l":"gamma-aminobutyric acid","na":5,"nb":1,"a":[["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A2.A.42","The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family"],["TCDB%3A2.A.22","The Neurotransmitter:Sodium Symporter (NSS) Family"],["proteintraitsmech%3ABIOLIP_ABU","ABU-binding site"]],"b":[["mapped/Gamma-aminobutyric_Acid.yaml","gamma-Aminobutyric acid"]]},{"id":"CHEBI:17043","l":"biphenyl-2-ol","na":5,"nb":1,"a":[["EC%3A1.14.13.44","2-hydroxybiphenyl 3-monooxygenase"],["EC%3A3.13.1.3","2'-hydroxybiphenyl-2-sulfinate desulfinase"],["RHEA%3A12945","2'-hydroxybiphenyl-2-sulfinate + H2O = biphenyl-2-ol + sulfite + H(+)"],["RHEA%3A11996","biphenyl-2-ol + NADH + O2 + H(+) = biphenyl-2,3-diol + NAD(+) + H2O"],["MCSA%3A971","2'-hydroxybiphenyl-2-sulfinate desulfinase"]],"b":[["mapped/11-Biphenyl-2-ol.yaml","[1,1′-Biphenyl]-2-ol"]]},{"id":"CHEBI:17128","l":"","na":5,"nb":1,"a":[["EC%3A1.2.1.63","6-oxohexanoate dehydrogenase"],["RHEA%3A13397","6-oxohexanoate + NADP(+) + H2O = hexanedioate + NADPH + 2 H(+)"],["RHEA%3A81711","hexanedioate + glutaryl-CoA = hexanedioyl-CoA + glutarate"],["RHEA%3A71743","hexanedioate(in) + 2-oxoglutarate(out) = hexanedioate(out) + 2-oxoglutarate(in)"],["RHEA%3A40583","hexanedioyl-CoA + H2O = hexanedioate + CoA + H(+)"]],"b":[["mapped/Adipate.yaml","Adipate"]]},{"id":"CHEBI:17540","l":"","na":5,"nb":1,"a":[["EC%3A3.2.1.63","1,2-alpha-L-fucosidase"],["RHEA%3A10816","methyl-2-alpha-L-fucopyranosyl-beta-D-galactoside + H2O = methyl beta-D-galactoside + L-fucose"],["RHEA%3A72531","methyl beta-D-galactoside(out) + ATP + H2O = methyl beta-D-galactoside(in) + ADP + phosphate + H(+)"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["proteintraitsmech%3ABIOLIP_MBG","MBG-binding site"]],"b":[["mapped/Methyl-B-D-galactopyranoside.yaml","Methyl-B-D-galactopyranoside"]]},{"id":"CHEBI:17781","l":"","na":5,"nb":1,"a":[["EC%3A3.5.99.1","riboflavinase"],["RHEA%3A86403","lumichrome(in) + ATP + H2O = lumichrome(out) + ADP + phosphate + H(+)"],["RHEA%3A86407","riboflavin + FMNH2 + O2 = lumichrome + D-ribose + FMN + H2O"],["RHEA%3A11408","riboflavin + H2O + H(+) = lumichrome + ribitol"],["proteintraitsmech%3ABIOLIP_LUM","LUM-binding site"]],"b":[["mapped/Lumichrome.yaml","Lumichrome"]]},{"id":"CHEBI:18145","l":"(R,R,R)-α-tocopherol","na":5,"nb":1,"a":[["EC%3A2.1.1.95","tocopherol C-methyltransferase"],["RHEA%3A71507","(+)-alpha-tocopherol(out) = (+)-alpha-tocopherol(in)"],["RHEA%3A45108","(+)-alpha-tocopherol + reduced [NADPH--hemoprotein reductase] + O2 = 13-hydroxy-alpha-tocopherol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A24012","gamma-tocopherol + S-adenosyl-L-methionine = (+)-alpha-tocopherol + S-adenosyl-L-homocysteine + H(+)"],["proteintraitsmech%3ABIOLIP_VIV","VIV-binding site"]],"b":[["mapped/Alpha-Tocopherol.yaml","alpha-Tocopherol"]]},{"id":"CHEBI:22599","l":"arabinose","na":5,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A9.B.142","The Integral membrane Glycosyltransferase family 39 (GT39) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A9.B.28","The Putative Essential Component of the MusEFGKI ABC Transporter, MusI (MusI) Family"],["TCDB%3A2.A.21","The Solute:Sodium Symporter (SSS) Family"]],"b":[["mapped/Arabinose.yaml","Arabinose"]]},{"id":"CHEBI:25979","l":"","na":5,"nb":1,"a":[["EC%3A1.14.14.77","phenylacetonitrile alpha-monooxygenase"],["EC%3A4.8.1.4","phenylacetaldoxime dehydratase"],["RHEA%3A52164","phenylacetonitrile + reduced [NADPH--hemoprotein reductase] + O2 = (R)-mandelonitrile + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A69308","(Z)-phenyl-N-(sulfonatooxy)methanimidothioate = phenylacetonitrile + sulfur + sulfate"],["RHEA%3A20069","(Z)-phenylacetaldehyde oxime = phenylacetonitrile + H2O"]],"b":[["mapped/Benzylcyanide.yaml","Benzylcyanide"]]},{"id":"CHEBI:26672","l":"siderophore","na":5,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_26672","siderophore cofactor class"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A1.B.17","The Outer Membrane Factor (OMF) Family"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/Siderophore.yaml","Siderophore"]]},{"id":"CHEBI:27750","l":"ethyl acetate","na":5,"nb":1,"a":[["EC%3A2.3.1.268","ethanol O-acetyltransferase"],["EC%3A3.1.1.113","ethyl acetate hydrolase"],["RHEA%3A55972","ethanol + acetyl-CoA = ethyl acetate + CoA"],["RHEA%3A58148","ethyl acetate + H2O = ethanol + acetate + H(+)"],["proteintraitsmech%3ABIOLIP_EEE","EEE-binding site"]],"b":[["mapped/Ethyl_Acetate.yaml","ethyl acetate"]]},{"id":"CHEBI:28034","l":"","na":5,"nb":1,"a":[["EC%3A2.3.1.18","galactoside O-acetyltransferase"],["EC%3A2.4.3.1","beta-galactoside alpha-(2,6)-sialyltransferase"],["RHEA%3A15713","a beta-D-galactoside + acetyl-CoA = a 6-acetyl-beta-D-galactoside + CoA"],["RHEA%3A52104","a beta-D-galactoside + CMP-N-acetyl-beta-neuraminate = an N-acetyl-alpha-neuraminyl-(2->6)-beta-D-galactosyl derivative + CMP + H(+)"],["RHEA%3A85983","a beta-D-galactoside + UDP-N-acetyl-alpha-D-glucosamine = an N-acetyl-alpha-D-glucosaminyl-(1->4)-beta-D-galactosyl derivative + UDP + H(+)"]],"b":[["mapped/Beta-D-galactoside.yaml","Beta-D-galactoside"]]},{"id":"CHEBI:30043","l":"","na":5,"nb":1,"a":[["EC%3A1.14.12.15","terephthalate 1,2-dioxygenase"],["EC%3A3.1.1.102","mono(ethylene terephthalate) hydrolase"],["RHEA%3A49532","4-[(2-hydroxyethoxy)carbonyl]benzoate + H2O = terephthalate + ethylene glycol + H(+)"],["RHEA%3A10312","terephthalate + NADH + O2 + H(+) = (3S,4R)-3,4-dihydroxycyclohexa-1,5-diene-1,4-dicarboxylate + NAD(+)"],["TCDB%3A2.A.80","The Tricarboxylate Transporter (TTT) Family"]],"b":[["mapped/Terephthalate.yaml","Terephthalate"]]},{"id":"CHEBI:32588","l":"potassium chloride","na":1,"nb":5,"a":[["TCDB%3A2.A.30","The Cation-Chloride Cotransporter (CCC) Family"]],"b":[["mapped/Kcl.yaml","KCl"],["mapped/Marine_Broth_2216.yaml","Marine broth 2216"],["mapped/Marine_agar_2216.yaml","Marine agar 2216"],["mapped/Mc_general_salts.yaml","Mc_general_salts"],["mapped/Mc_general_salts_SO4free.yaml","Mc_general_salts_SO4free"]]},{"id":"CHEBI:35899","l":"crotonate","na":5,"nb":1,"a":[["EC%3A1.3.1.31","2-enoate reductase"],["RHEA%3A74903","(2E)-2-butenoate + ATP + H(+) = (2E)-but-2-enoyl-AMP + diphosphate"],["RHEA%3A74899","(2E)-2-butenoate + holo-[ACP] + ATP = (2E)-butenoyl-[ACP] + AMP + diphosphate"],["RHEA%3A10200","butanoate + NAD(+) = (2E)-2-butenoate + NADH + H(+)"],["RHEA%3A69172","N(6)-(2E)-butenoyl-L-lysyl-[protein] + H2O = (2E)-2-butenoate + L-lysyl-[protein]"]],"b":[["mapped/Na-crotonate.yaml","Na-crotonate"]]},{"id":"CHEBI:37671","l":"(1->3)-beta-D-glucan","na":5,"nb":1,"a":[["EC%3A2.4.1.30","1,3-beta-oligoglucan phosphorylase"],["EC%3A2.4.1.34","1,3-beta-glucan synthase"],["EC%3A2.4.1.97","1,3-beta-D-glucan phosphorylase"],["RHEA%3A16041","[(1->3)-beta-D-glucosyl](n) + phosphate = [(1->3)-beta-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate"],["RHEA%3A21476","[(1->3)-beta-D-glucosyl](n) + UDP-alpha-D-glucose = [(1->3)-beta-D-glucosyl](n+1) + UDP + H(+)"]],"b":[["mapped/3-beta-d-glucan.yaml","3-beta-D-glucan"]]},{"id":"CHEBI:38028","l":"","na":5,"nb":1,"a":[["EC%3A3.5.2.15","cyanuric acid amidohydrolase"],["EC%3A3.5.4.42","N-isopropylammelide isopropylaminohydrolase"],["RHEA%3A70363","cyanurate + H2O = 1-carboxybiuret + H(+)"],["RHEA%3A14641","cyanurate + H2O = biuret + CO2"],["RHEA%3A23608","N-isopropylammelide + H2O + H(+) = isopropylamine + cyanurate"]],"b":[["mapped/Cyanuric_acid.yaml","Cyanuric acid"]]},{"id":"CHEBI:3962","l":"curcumin","na":5,"nb":1,"a":[["EC%3A1.3.1.n3","curcumin reductase"],["EC%3A2.3.1.217","curcumin synthase"],["RHEA%3A34819","dihydrocurcumin + NADP(+) = curcumin + NADPH + H(+)"],["RHEA%3A34823","(E)-feruloylacetyl-CoA + (E)-feruloyl-CoA + H2O = curcumin + CO2 + 2 CoA"],["RHEA%3A34815","tetrahydrocurcumin + 2 NADP(+) = curcumin + 2 NADPH + 2 H(+)"]],"b":[["mapped/Curcumin.yaml","Curcumin"]]},{"id":"CHEBI:44423","l":"","na":5,"nb":1,"a":[["EC%3A2.6.99.3","O-ureido-L-serine synthase"],["EC%3A3.5.3.25","N(omega)-hydroxy-L-arginine amidinohydrolase"],["RHEA%3A36263","hydroxyurea + O-acetyl-L-serine = O-ureido-L-serine + acetate + H(+)"],["RHEA%3A36791","N(omega)-hydroxy-L-arginine + H2O = hydroxyurea + L-ornithine"],["proteintraitsmech%3ABIOLIP_NHY","NHY-binding site"]],"b":[["mapped/Hydroxyurea.yaml","Hydroxyurea"]]},{"id":"CHEBI:541975","l":"","na":5,"nb":1,"a":[["RHEA%3A42188","3beta-hydroxy-5alpha-androstan-17-one + NAD(+) = 5alpha-androstan-3,17-dione + NADH + H(+)"],["RHEA%3A56916","3beta-hydroxy-5alpha-androstan-17-one + NADP(+) = 5alpha-androstan-3,17-dione + NADPH + H(+)"],["RHEA%3A53480","3beta-hydroxy-5alpha-androstan-17-one + NADPH + H(+) = 5alpha-androstane-3beta,17beta-diol + NADP(+)"],["RHEA%3A43896","3beta-hydroxy-5alpha-androstan-17-one + reduced [NADPH--hemoprotein reductase] + O2 = 3beta,7alpha-dihydroxy-5alpha-androstan-17-one + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A61820","3beta-hydroxy-5alpha-androstan-17-one + UDP-alpha-D-glucose = epiandrosterone 3-beta-D-glucoside + UDP + H(+)"]],"b":[["mapped/Epiandrosterone.yaml","Epiandrosterone"]]},{"id":"CHEBI:75937","l":"monooleoylglycerol","na":5,"nb":1,"a":[["RHEA%3A38455","1,2-di-(9Z-octadecenoyl)-glycerol + H2O = (9Z-octadecenoyl)-glycerol + (9Z)-octadecenoate + H(+)"],["RHEA%3A39935","1,2-di-(9Z-octadecenoyl)-sn-glycerol + H2O = (9Z-octadecenoyl)-glycerol + (9Z)-octadecenoate + H(+)"],["RHEA%3A39955","(9Z-octadecenoyl)-glycerol + H2O = glycerol + (9Z)-octadecenoate + H(+)"],["RHEA%3A50884","(9Z)-octadecenoyl-sn-glycero-3-phosphate + H2O = (9Z-octadecenoyl)-glycerol + phosphate"],["RHEA%3A47868","di-(9Z)-octadecenoylglycerol + H2O = (9Z-octadecenoyl)-glycerol + (9Z)-octadecenoate + H(+)"]],"b":[["mapped/Glycerol_Mono-oleate.yaml","Glycerol mono-oleate"]]},{"id":"CHEBI:11047","l":"(S)-3-hydroxybutyrate","na":4,"nb":1,"a":[["EC%3A1.1.99.24","hydroxyacid-oxoacid transhydrogenase"],["RHEA%3A65208","(3S)-3-hydroxybutanoyl-CoA + H2O = (S)-3-hydroxybutanoate + CoA + H(+)"],["RHEA%3A23048","(S)-3-hydroxybutanoate + 2-oxoglutarate = (R)-2-hydroxyglutarate + acetoacetate"],["RHEA%3A71871","(S)-3-hydroxybutanoate(out) + H(+)(out) = (S)-3-hydroxybutanoate(in) + H(+)(in)"]],"b":[["mapped/S-3-hydroxybutyrate.yaml","(S)-3-hydroxybutyrate"]]},{"id":"CHEBI:13997","l":"","na":4,"nb":1,"a":[["EC%3A2.8.3.11","citramalate CoA-transferase"],["RHEA%3A17621","citramalate + acetyl-CoA = (3S)-citramalyl-CoA + acetate"],["TCDB%3A2.A.24","The 2-Hydroxycarboxylate Transporter (2-HCT) Family"],["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"]],"b":[["mapped/Citramalate.yaml","Citramalate"]]},{"id":"CHEBI:15447","l":"","na":4,"nb":1,"a":[["EC%3A2.4.2.24","1,4-beta-D-xylan synthase"],["RHEA%3A15289","[(1->4)-beta-D-xylan](n) + UDP-alpha-D-xylose = [(1->4)-beta-D-xylan](n+1) + UDP + H(+)"],["MCSA%3A431","acetylxylan esterase"],["proteintraitsmech%3ABIOLIP_XYP","XYP-binding site"]],"b":[["mapped/Xylan_From_Beechwood.yaml","Xylan from Beechwood"]]},{"id":"CHEBI:15794","l":"","na":4,"nb":1,"a":[["EC%3A1.17.3.4","juglone 3-hydroxylase"],["RHEA%3A18745","2 juglone + O2 = 2 3,5-dihydroxy-1,4-naphthoquinone + 2 H(+)"],["RHEA%3A50748","juglone + H2O = naphthalene-1,2,4,8-tetrol"],["proteintraitsmech%3ABIOLIP_JUG","JUG-binding site"]],"b":[["mapped/Juglone.yaml","Juglone"]]},{"id":"CHEBI:15895","l":"","na":4,"nb":1,"a":[["EC%3A1.1.1.48","D-galactose 1-dehydrogenase"],["EC%3A3.1.1.25","1,4-lactonase"],["RHEA%3A44900","D-galactono-1,4-lactone + H2O = D-galactonate + H(+)"],["RHEA%3A21296","D-galactose + NAD(+) = D-galactono-1,4-lactone + NADH + H(+)"]],"b":[["mapped/D-galactonic_Acid_Lactone.yaml","D-galactonic Acid Lactone"]]},{"id":"CHEBI:16087","l":"","na":4,"nb":1,"a":[["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"],["TCDB%3A1.B.25","The Outer Membrane Porin (Opr) Family"],["MCSA%3A552","aconitate hydratase"],["MCSA%3A272","isocitrate lyase"]],"b":[["mapped/Isocitrate.yaml","Isocitrate"]]},{"id":"CHEBI:16096","l":"","na":4,"nb":1,"a":[["EC%3A2.1.1.118","columbamine O-methyltransferase"],["EC%3A2.1.1.147","corydaline synthase"],["RHEA%3A15373","columbamine + S-adenosyl-L-methionine = palmatine + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A14773","palmatine + S-adenosyl-L-methionine + 2 NADPH = corydaline + S-adenosyl-L-homocysteine + 2 NADP(+)"]],"b":[["mapped/Palmatine.yaml","Palmatine"]]},{"id":"CHEBI:16109","l":"propane-1,3-diol","na":4,"nb":1,"a":[["EC%3A1.1.1.202","1,3-propanediol dehydrogenase"],["RHEA%3A23188","propane-1,3-diol + NAD(+) = 3-hydroxypropanal + NADH + H(+)"],["RHEA%3A35599","propane-1,3-diol + NADP(+) = 3-hydroxypropanal + NADPH + H(+)"],["proteintraitsmech%3ABIOLIP_PDO","PDO-binding site"]],"b":[["mapped/13-Propanediol.yaml","1,3-Propanediol"]]},{"id":"CHEBI:16148","l":"heptadecane","na":4,"nb":1,"a":[["EC%3A4.1.99.5","aldehyde oxygenase (deformylating)"],["RHEA%3A77243","hnu + octadecanoate + H(+) = heptadecane + CO2"],["RHEA%3A30415","octadecanal + 2 NADPH + O2 + H(+) = heptadecane + formate + 2 NADP(+) + H2O"],["RHEA%3A83559","octadecanal + reduced [NADPH--hemoprotein reductase] + O2 = heptadecane + oxidized [NADPH--hemoprotein reductase] + CO2 + H2O + H(+)"]],"b":[["mapped/Heptadecane.yaml","Heptadecane"]]},{"id":"CHEBI:16226","l":"","na":4,"nb":1,"a":[["EC%3A2.4.1.210","limonoid glucosyltransferase"],["EC%3A3.1.1.36","limonin-D-ring-lactonase"],["RHEA%3A10896","limonin + 2 H2O = limonoate + 2 H(+)"],["RHEA%3A11256","limonin + UDP-alpha-D-glucose + H2O = limonin 17-beta-D-glucoside + UDP + 2 H(+)"]],"b":[["mapped/Limonin.yaml","Limonin"]]},{"id":"CHEBI:16238","l":"FAD","na":4,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16238","requires FAD"],["MCSA%3A968","aldehyde oxidase"],["MCSA%3A969","Phytoene desaturase (lycopene-forming)"],["proteintraitsmech%3ABIOLIP_FAD","FAD-binding site"]],"b":[["mapped/Fad.yaml","FAD"]]},{"id":"CHEBI:16354","l":"N-methylhydantoin","na":4,"nb":1,"a":[["EC%3A3.5.2.14","N-methylhydantoinase (ATP-hydrolyzing)"],["EC%3A3.5.4.21","creatinine deaminase"],["RHEA%3A12681","creatinine + H2O + H(+) = N-methylhydantoin + NH4(+)"],["RHEA%3A11720","N-methylhydantoin + ATP + 2 H2O = N-carbamoylsarcosine + ADP + phosphate + 2 H(+)"]],"b":[["mapped/N-methylhydantoin.yaml","N-methylhydantoin"]]},{"id":"CHEBI:16523","l":"","na":4,"nb":1,"a":[["GO%3A0070179","D-serine biosynthetic process"],["ARO%3A3002973","vanTm gene in vanL cluster"],["ARO%3A3002974","vanTr gene in vanL cluster"],["proteintraitsmech%3ABIOLIP_DSN","DSN-binding site"]],"b":[["mapped/D-Serine.yaml","D-Serine"]]},{"id":"CHEBI:17246","l":"","na":4,"nb":1,"a":[["EC%3A1.1.2.6","polyvinyl alcohol dehydrogenase (cytochrome)"],["EC%3A1.1.3.30","polyvinyl-alcohol oxidase"],["RHEA%3A20157","a polyvinyl alcohol + 2n Fe(III)-[cytochrome c] = an oxidized polyvinyl alcohol + 2n Fe(II)-[cytochrome c] + 2n H(+)"],["RHEA%3A21688","a polyvinyl alcohol + n O2 = an oxidized polyvinyl alcohol + n H2O2"]],"b":[["mapped/Polyvinyl_alcohol.yaml","Polyvinyl alcohol"]]},{"id":"CHEBI:17561","l":"L-cysteine","na":1,"nb":4,"a":[["proteintraitsmech%3ABIOLIP_CYS","CYS-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-cysteine.yaml","L-Cysteine"],["mapped/L-cysteine_Hcl_X_H2o.yaml","L-Cysteine HCl x H2O"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17682","l":"","na":4,"nb":1,"a":[["EC%3A4.1.2.38","benzoin aldolase"],["RHEA%3A21460","benzoin = 2 benzaldehyde"],["RHEA%3A25960","benzoin + NADP(+) = benzil + NADPH + H(+)"],["MCSA%3A221","benzoin aldolase"]],"b":[["mapped/Benzoin.yaml","Benzoin"]]},{"id":"CHEBI:18154","l":"polysaccharide","na":4,"nb":1,"a":[["TCDB%3A9.B.97","The Acyltransferase-3/Putative Acetyl-CoA Transporter (AT3AT) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A1.B.18","The Outer Membrane Auxiliary (OMA) Protein Family"]],"b":[["mapped/Polysaccharides.yaml","Polysaccharides"]]},{"id":"CHEBI:18268","l":"","na":4,"nb":1,"a":[["EC%3A1.1.1.20","glucuronolactone reductase"],["RHEA%3A30767","D-glucurono-3,6-lactone + H2O = D-glucuronate + H(+)"],["RHEA%3A30883","D-glucurono-3,6-lactone + NAD(+) + 2 H2O = D-glucarate + NADH + 3 H(+)"],["RHEA%3A18925","L-gulono-1,4-lactone + NADP(+) = D-glucurono-3,6-lactone + NADPH + H(+)"]],"b":[["mapped/D-Glucuronic_Acid_Gamma_Lactone.yaml","D-Glucuronic acid gamma lactone"]]},{"id":"CHEBI:18353","l":"","na":4,"nb":1,"a":[["EC%3A1.1.3.38","vanillyl-alcohol oxidase"],["RHEA%3A10036","4-hydroxy-3-methoxy-benzenemethanol + O2 = vanillin + H2O2"],["RHEA%3A76619","(6E)-8-methylnon-6-enoyl-CoA + 4-hydroxy-3-methoxy-benzenemethanol = capsiate + CoA"],["RHEA%3A76611","vanillin + NADPH + H(+) = 4-hydroxy-3-methoxy-benzenemethanol + NADP(+)"]],"b":[["mapped/Vanillyl_Alcohol.yaml","Vanillyl Alcohol"]]},{"id":"CHEBI:23681","l":"dibenzothiophene","na":4,"nb":1,"a":[["EC%3A1.14.14.21","dibenzothiophene monooxygenase"],["RHEA%3A49072","dibenzothiophene + 2 FMNH2 + 2 O2 = dibenzothiophene 5,5-dioxide + 2 FMN + 2 H2O + 2 H(+)"],["RHEA%3A49076","dibenzothiophene + FMNH2 + O2 = dibenzothiophene 5-oxide + FMN + H2O + H(+)"],["MCSA%3A973","DszC protein"]],"b":[["mapped/Dibenzothiophene.yaml","Dibenzothiophene"]]},{"id":"CHEBI:27605","l":"D-psicose","na":4,"nb":1,"a":[["EC%3A5.1.3.30","D-psicose 3-epimerase"],["EC%3A5.1.3.31","D-tagatose 3-epimerase"],["RHEA%3A42360","D-allulose = keto-D-fructose"],["proteintraitsmech%3ABIOLIP_PSJ","PSJ-binding site"]],"b":[["mapped/D-psicose.yaml","D-psicose"]]},{"id":"CHEBI:27856","l":"","na":4,"nb":1,"a":[["EC%3A3.5.1.4","amidase"],["RHEA%3A85603","acetamide = acetonitrile + H2O"],["RHEA%3A45048","acetamide + H2O = acetate + NH4(+)"],["RHEA%3A51648","N(6)-acetyl-L-lysyl-[protein] + O2 + H2O = acetamide + (S)-2-amino-6-oxohexanoyl-[protein] + H2O2"]],"b":[["mapped/Acetamide.yaml","Acetamide"]]},{"id":"CHEBI:27904","l":"D-erythrose","na":4,"nb":1,"a":[["RHEA%3A80075","D-erythrose + 3-hydroxypyruvate = (3S,4S,5R,6R)-3,4,5,6,7-pentahydroxy-2-oxoheptanoate"],["RHEA%3A66376","D-erythrose 4-phosphate + H2O = D-erythrose + phosphate"],["RHEA%3A53180","D-erythrose = D-erythrulose"],["RHEA%3A59928","erythritol + NADP(+) = D-erythrose + NADPH + H(+)"]],"b":[["mapped/D-erythrose.yaml","D-erythrose"]]},{"id":"CHEBI:28161","l":"","na":4,"nb":1,"a":[["RHEA%3A84895","4-O-methyl-alpha-D-glucuronosyl-(1->2)-beta-D-xylose + H2O = beta-D-xylose + 4-O-methyl-beta-D-glucuronate"],["RHEA%3A63336","alpha-D-xylose = beta-D-xylose"],["MCSA%3A548","endo-1,4-beta-xylanase (glycosyl hydrolase 10)"],["MCSA%3A432","endo-1,4-beta-xylanase (glycosyl hydrolase 11 family)"]],"b":[["mapped/Beta-D-xylose.yaml","Beta-D-xylose"]]},{"id":"CHEBI:30411","l":"cobalamin","na":4,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_30411","requires cobalamin"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A9.A.54","The Lysosomal Cobalamin (B12) Transporter (L-B12T) Family"],["TCDB%3A1.B.14","The Outer Membrane Receptor (OMR) Family"]],"b":[["mapped/Cobalamine.yaml","Cobalamine"]]},{"id":"CHEBI:30769","l":"citric acid","na":1,"nb":4,"a":[["proteintraitsmech%3ABIOLIP_CIT","CIT-binding site"]],"b":[["mapped/Citric_Acid.yaml","Citric acid"],["mapped/Citric_Acid_X_H2o.yaml","Citric acid x H2O"],["mapped/Citric_Acidh2o.yaml","Citric Acid•H2O"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:32139","l":"sodium hydrogencarbonate","na":1,"nb":4,"a":[["TCDB%3A2.A.31","The Anion Exchanger (AE) Family"]],"b":[["mapped/84_GL_NaHCO3_Solution.yaml","84 g/L NaHCO3 solution"],["mapped/Marine_Broth_2216.yaml","Marine broth 2216"],["mapped/Marine_agar_2216.yaml","Marine agar 2216"],["mapped/Nahco3.yaml","NaHCO3"]]},{"id":"CHEBI:34768","l":"furfural","na":4,"nb":1,"a":[["RHEA%3A77519","furfural + hydrogen cyanide = (2R)-2-(furan-2-yl)-2-hydroxyacetonitrile"],["RHEA%3A76667","furfural + NAD(+) + H2O = 2-furoate + NADH + 2 H(+)"],["RHEA%3A76671","furfural + NADP(+) + H2O = 2-furoate + NADPH + 2 H(+)"],["TCDB%3A1.C.113","The Hemolysin III (Hly III) Family"]],"b":[["mapped/2-Furfuraldehyde.yaml","2-Furfuraldehyde"]]},{"id":"CHEBI:3528","l":"","na":4,"nb":1,"a":[["RHEA%3A84439","D-cellotriose = beta-D-glucosyl-(1->4)-beta-D-glucosyl-(1->4)-D-mannopyranose"],["RHEA%3A59656","D-cellotriose + O2 = D-cellotriono-1,5-lactone + H2O2"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A4.A.3","The PTS Lactose-N,N'-Diacetylchitobiose-β-glucoside (Lac) Family"]],"b":[["mapped/Cellotriose.yaml","Cellotriose"]]},{"id":"CHEBI:4167)","l":"","na":4,"nb":1,"a":[["RHEA%3A22152","a ubiquinone + D-glucose = D-glucono-1,5-lactone + a ubiquinol"],["RHEA%3A20637","D-fructose + D-glucose = D-glucono-1,5-lactone + D-sorbitol"],["RHEA%3A17825","D-glucose + ATP = D-glucose 6-phosphate + ADP + H(+)"],["RHEA%3A68864","isomaltose + H2O = alpha-D-glucose + D-glucose"]],"b":[["mapped/Dextrose.yaml","Dextrose"]]},{"id":"CHEBI:45422","l":"","na":4,"nb":1,"a":[["RHEA%3A68112","propanamide + H2O = propanoate + NH4(+)"],["RHEA%3A85607","propanamide = propanonitrile + H2O"],["TCDB%3A1.B.94","The Pro-Pro-Glu Outer Membrane Porin (PPE) Family"],["proteintraitsmech%3ABIOLIP_ROP","ROP-binding site"]],"b":[["mapped/Propionamide.yaml","Propionamide"]]},{"id":"CHEBI:48942","l":"","na":4,"nb":1,"a":[["RHEA%3A76655","3-methylbutanal + NAD(+) + H2O = 3-methylbutanoate + NADH + 2 H(+)"],["RHEA%3A76651","3-methylbutanal + NADP(+) + H2O = 3-methylbutanoate + NADPH + 2 H(+)"],["RHEA%3A46184","3-methylbutanoate + ATP + CoA = 3-methylbutanoyl-CoA + AMP + diphosphate"],["RHEA%3A66984","3-methylbutanoyl-CoA + H2O = 3-methylbutanoate + CoA + H(+)"]],"b":[["mapped/Isovalerate.yaml","Isovalerate"]]},{"id":"CHEBI:48945","l":"","na":4,"nb":1,"a":[["RHEA%3A65456","2-methylbutan-1-ol + acetyl-CoA = 2-methylbutyl acetate + CoA"],["RHEA%3A65464","2-methylbutan-1-ol + butanoyl-CoA = 2-methylbutyl butanoate + CoA"],["RHEA%3A65532","2-methylbutan-1-ol + hexanoyl-CoA = 2-methylbutyl hexanoate + CoA"],["RHEA%3A84375","2-methylbutan-1-ol + NADP(+) = 2-methylbutanal + NADPH + H(+)"]],"b":[["mapped/2-methyl-1-butanol.yaml","2-methyl-1-butanol"]]},{"id":"CHEBI:5169","l":"fraxetin","na":4,"nb":1,"a":[["EC%3A1.14.11.60","scopoletin 8-hydroxylase"],["EC%3A1.14.14.164","fraxetin 5-hydroxylase"],["RHEA%3A57844","fraxetin + reduced [NADPH--hemoprotein reductase] + O2 = sideretin (reduced form) + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A57848","scopoletin + 2-oxoglutarate + O2 = fraxetin + succinate + CO2"]],"b":[["mapped/Fraxetin.yaml","Fraxetin"]]},{"id":"CHEBI:59899","l":"3-nitropropanoate","na":4,"nb":1,"a":[["EC%3A1.3.1.16","beta-nitroacrylate reductase"],["RHEA%3A81391","2-nitrobutanedioate + H(+) = 3-nitropropanoate + CO2"],["RHEA%3A81399","3-nitropropanoate + A + H2O = 3-oxopropanoate + nitrite + AH2 + H(+)"],["RHEA%3A23892","3-nitropropanoate + NADP(+) = 3-nitroacrylate + NADPH + H(+)"]],"b":[["mapped/3-nitropropanoate.yaml","3-nitropropanoate"]]},{"id":"CHEBI:6104","l":"","na":4,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/Kanamycin.yaml","Kanamycin"]]},{"id":"CHEBI:74904","l":"","na":4,"nb":1,"a":[["EC%3A2.8.3.24","(R)-2-hydroxy-4-methylpentanoate CoA-transferase"],["RHEA%3A66988","4-methylpentanoate + ATP + CoA = 4-methylpentanoyl-CoA + AMP + diphosphate"],["RHEA%3A49440","4-methylpentanoyl-CoA + (2R)-hydroxy-4-methylpentanoate = (R)-2-hydroxy-4-methylpentanoyl-CoA + 4-methylpentanoate"],["RHEA%3A55064","4-methylpentanoyl-CoA + H2O = 4-methylpentanoate + CoA + H(+)"]],"b":[["mapped/Isocaproate.yaml","Isocaproate"]]},{"id":"CHEBI:8984","l":"","na":4,"nb":1,"a":[["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A1.B.1","The General Bacterial Porin (GBP) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/Sodium_Dodecyl_Sulfate.yaml","Sodium Dodecyl Sulfate"]]},{"id":"CHEBI:9533","l":"","na":4,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"],["TCDB%3A2.A.88","The Vitamin Uptake Transporter (VUT) Family"],["proteintraitsmech%3ABIOLIP_TPS","TPS-binding site"]],"b":[["mapped/Thiamine_monophosphate.yaml","thiamine monophosphate"]]},{"id":"CHEBI:125610","l":"N-acetyltyramine","na":3,"nb":1,"a":[["RHEA%3A67200","N-acetyltyramine + H2O = tyramine + acetate"],["RHEA%3A80971","N-acetyltyramine + reduced [NADPH--hemoprotein reductase] + O2 = N-acetyldopamine + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A66136","tyramine + acetyl-CoA = N-acetyltyramine + CoA + H(+)"]],"b":[["mapped/N-acetyltyramine.yaml","N-acetyltyramine"]]},{"id":"CHEBI:136511","l":"manganese dioxide","na":3,"nb":1,"a":[["EC%3A1.16.3.3","manganese oxidase"],["RHEA%3A52240","2 Mn(2+) + O2 + 2 H2O = 2 MnO2 + 4 H(+)"],["RHEA%3A52248","4 Mn(3+) + O2 + 6 H2O = 4 MnO2 + 12 H(+)"]],"b":[["mapped/Mno2.yaml","MnO2"]]},{"id":"CHEBI:145933","l":"","na":3,"nb":1,"a":[["RHEA%3A51668","mevastatin + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = pravastatin lactone + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O"],["RHEA%3A62752","pravastatin lactone + H2O = pravastatin diol lactone + (S)-2-methylbutanoate + H(+)"],["RHEA%3A63048","pravastatin lactone + H2O = pravastatin + H(+)"]],"b":[["mapped/Pravastatin_Lactone.yaml","Pravastatin lactone"]]},{"id":"CHEBI:149531","l":"","na":3,"nb":1,"a":[["EC%3A1.1.3.50","C-glycoside oxidase"],["RHEA%3A75251","carminate + O2 = 3'-dehydrocarminate + H2O2"],["RHEA%3A63752","kermesate + UDP-alpha-D-glucose = carminate + UDP + 2 H(+)"]],"b":[["mapped/Carminate.yaml","Carminate"]]},{"id":"CHEBI:15603","l":"L-leucine","na":1,"nb":3,"a":[["proteintraitsmech%3ABIOLIP_LEU","LEU-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-leucine.yaml","L-Leucine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:15929","l":"","na":3,"nb":1,"a":[["EC%3A2.1.1.141","jasmonate O-methyltransferase"],["RHEA%3A13349","jasmonate + S-adenosyl-L-methionine = methyl (-)-jasmonate + S-adenosyl-L-homocysteine"],["RHEA%3A55372","methyl (-)-jasmonate + H2O = jasmonate + methanol + H(+)"]],"b":[["mapped/Methyl_Jasmonate.yaml","methyl jasmonate"]]},{"id":"CHEBI:16019","l":"","na":3,"nb":1,"a":[["EC%3A3.1.7.1","prenyl-diphosphatase"],["RHEA%3A21496","dimethylallyl diphosphate + H2O = prenol + diphosphate"],["RHEA%3A58420","prenol + NADP(+) = 3-methyl-2-butenal + NADPH + H(+)"]],"b":[["mapped/3-methyl-2-butenol.yaml","3-methyl-2-butenol"]]},{"id":"CHEBI:16027","l":"","na":3,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16027","requires adenosine 5'-monophosphate"],["MCSA%3A632","DNA nucleotidylexotransferase"],["proteintraitsmech%3ABIOLIP_AMP","AMP-binding site"]],"b":[["mapped/Adenosine_5-monophosphate.yaml","Adenosine 5'-monophosphate"]]},{"id":"CHEBI:16482","l":"naphthalene","na":3,"nb":1,"a":[["EC%3A1.14.12.12","naphthalene 1,2-dioxygenase"],["RHEA%3A19173","naphthalene + NADH + O2 + H(+) = (1R,2S)-1,2-dihydronaphthalene-1,2-diol + NAD(+)"],["MCSA%3A130","naphthalene 1,2-dioxygenase"]],"b":[["mapped/Naphthalene.yaml","Naphthalene"]]},{"id":"CHEBI:16602","l":"trichloroethene","na":3,"nb":1,"a":[["EC%3A1.21.99.5","tetrachloroethene reductive dehalogenase"],["RHEA%3A67992","trichloroethene + AH2 = (Z)-1,2-dichloroethene + chloride + A + H(+)"],["RHEA%3A20353","trichloroethene + chloride + A + H(+) = tetrachloroethene + AH2"]],"b":[["mapped/Trichloroethylene.yaml","Trichloroethylene"]]},{"id":"CHEBI:16828","l":"L-tryptophan","na":1,"nb":3,"a":[["proteintraitsmech%3ABIOLIP_TRP","TRP-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-tryptophan.yaml","L-Tryptophan"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16885","l":"","na":3,"nb":1,"a":[["EC%3A2.4.1.99","sucrose:sucrose fructosyltransferase"],["RHEA%3A33783","1(F)-beta-D-fructosylsucrose + sucrose = 1,6-kestotetraose + beta-D-glucose"],["RHEA%3A23312","2 sucrose = 1(F)-beta-D-fructosylsucrose + D-glucose"]],"b":[["mapped/1-Kestose.yaml","1-Kestose"]]},{"id":"CHEBI:17097","l":"biphenyl","na":3,"nb":1,"a":[["EC%3A1.14.12.18","biphenyl 2,3-dioxygenase"],["RHEA%3A18165","biphenyl + NADH + O2 + H(+) = (2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diol + NAD(+)"],["proteintraitsmech%3ABIOLIP_BNL","BNL-binding site"]],"b":[["mapped/Biphenyl.yaml","Biphenyl"]]},{"id":"CHEBI:17484","l":"benzyl isothiocyanate","na":3,"nb":1,"a":[["EC%3A5.99.1.1","thiocyanate isomerase"],["RHEA%3A10004","benzyl isothiocyanate = benzyl thiocyanate"],["RHEA%3A69300","(Z)-phenyl-N-(sulfonatooxy)methanimidothioate = benzyl isothiocyanate + sulfate"]],"b":[["mapped/Benzyl_Isothiocyanate.yaml","Benzyl isothiocyanate"]]},{"id":"CHEBI:18367","l":"phosphate(3-)","na":3,"nb":1,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"],["proteintraitsmech%3ABIOLIP_PO4","PO4-binding site"]],"b":[["mapped/Orthophosphate.yaml","Orthophosphate"]]},{"id":"CHEBI:2179","l":"","na":3,"nb":1,"a":[["RHEA%3A35007","D-fucose(in) = D-fucose(out)"],["RHEA%3A35011","D-fucose(in) + H(+)(in) = D-fucose(out) + H(+)(out)"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"]],"b":[["mapped/6-deoxy-d-galactose.yaml","6-deoxy-D-galactose"]]},{"id":"CHEBI:22908","l":"","na":3,"nb":1,"a":[["TCDB%3A2.A.31","The Anion Exchanger (AE) Family"],["TCDB%3A3.A.31","The Endosomal Sorting Complexes Required for Transport III (ESCRT-III) Family"],["TCDB%3A1.A.8","The Major Intrinsic Protein (MIP) Family"]],"b":[["mapped/Borate.yaml","Borate"]]},{"id":"CHEBI:2365","l":"(+)-abscisic acid","na":3,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.17","The Proton-dependent Oligopeptide Transporter (POT/PTR) Family"],["proteintraitsmech%3ABIOLIP_A8S","A8S-binding site"]],"b":[["mapped/Abscisic_Acid.yaml","Abscisic acid"]]},{"id":"CHEBI:27907","l":"","na":3,"nb":1,"a":[["EC%3A5.1.3.32","L-rhamnose mutarotase"],["RHEA%3A25584","alpha-L-rhamnose = beta-L-rhamnose"],["proteintraitsmech%3ABIOLIP_RAM","RAM-binding site"]],"b":[["mapped/Alpha-L-rhamnose.yaml","Alpha-L-rhamnose"]]},{"id":"CHEBI:28309","l":"","na":3,"nb":1,"a":[["RHEA%3A59632","D-xylobiose + O2 = D-xylobiono-1,5-lactone + H2O2"],["MCSA%3A548","endo-1,4-beta-xylanase (glycosyl hydrolase 10)"],["MCSA%3A432","endo-1,4-beta-xylanase (glycosyl hydrolase 11 family)"]],"b":[["mapped/Xylobiose.yaml","Xylobiose"]]},{"id":"CHEBI:28915","l":"fosfomycin","na":3,"nb":1,"a":[["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A1.B.5","The Pseudomonas OprP Porin (POP) Family"],["proteintraitsmech%3ABIOLIP_FCN","FCN-binding site"]],"b":[["mapped/Fosfomycin.yaml","Fosfomycin"]]},{"id":"CHEBI:29452","l":"","na":3,"nb":1,"a":[["EC%3A3.1.7.13","neryl diphosphate diphosphatase"],["RHEA%3A60672","nerol + NAD(+) = neral + NADH + H(+)"],["RHEA%3A65828","neryl diphosphate + H2O = nerol + diphosphate"]],"b":[["mapped/Nerol.yaml","Nerol"]]},{"id":"CHEBI:30719","l":"","na":3,"nb":1,"a":[["EC%3A4.2.1.35","(R)-2-methylmalate dehydratase"],["RHEA%3A42424","2-methylmaleate + H2O = (2R,3S)-3-methylmalate"],["RHEA%3A22332","(3R)-citramalate = 2-methylmaleate + H2O"]],"b":[["mapped/Citraconate.yaml","Citraconate"]]},{"id":"CHEBI:30803","l":"isophthalate(2-)","na":3,"nb":1,"a":[["EC%3A6.2.1.58","isophthalate--CoA ligase"],["RHEA%3A61636","isophthalate + ATP + CoA = isophthalyl-CoA + AMP + diphosphate"],["TCDB%3A2.A.80","The Tricarboxylate Transporter (TTT) Family"]],"b":[["mapped/Isophthalate.yaml","Isophthalate"]]},{"id":"CHEBI:30911","l":"glucitol","na":3,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A4.A.4","The PTS Glucitol (Gut) Family"]],"b":[["mapped/Sorbitol.yaml","Sorbitol"]]},{"id":"CHEBI:31128","l":"","na":3,"nb":1,"a":[["EC%3A1.14.13.84","4-hydroxyacetophenone monooxygenase"],["RHEA%3A47384","4-acetoxyphenol + H2O = hydroquinone + acetate + H(+)"],["RHEA%3A22916","4'-hydroxyacetophenone + NADPH + O2 + H(+) = 4-acetoxyphenol + NADP(+) + H2O"]],"b":[["mapped/4-acetoxyphenol.yaml","4-acetoxyphenol"]]},{"id":"CHEBI:32816","l":"pyruvic 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H(+)"],["proteintraitsmech%3ABIOLIP_TA1","TA1-binding site"]],"b":[["mapped/Paclitaxel.yaml","Paclitaxel"]]},{"id":"CHEBI:4629","l":"diosgenin","na":3,"nb":1,"a":[["EC%3A3.2.1.189","dioscin glycosidase (diosgenin-forming)"],["RHEA%3A36827","dioscin + 3 H2O = diosgenin + 2 L-rhamnopyranose + D-glucose"],["RHEA%3A61888","diosgenin + UDP-alpha-D-glucose = diosgenin 3-O-beta-D-glucoside + UDP + H(+)"]],"b":[["mapped/Diosgenin.yaml","Diosgenin"]]},{"id":"CHEBI:5199","l":"Fusaric acid","na":3,"nb":1,"a":[["TCDB%3A2.A.85","The Aromatic Acid Exporter (ArAE) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A1.B.17","The Outer Membrane Factor (OMF) Family"]],"b":[["mapped/Fusaric_Acid.yaml","Fusaric acid"]]},{"id":"CHEBI:5417","l":"","na":3,"nb":1,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A4.A.1","The PTS Glucose-Glucoside (Glc) Family"],["TCDB%3A4.A.6","The PTS Mannose-Fructose-Sorbose (Man) 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+ 2 S-adenosyl-L-homocysteine + 2 H(+)"]],"b":[["mapped/Pterostilbene.yaml","Pterostilbene"]]},{"id":"CHEBI:9215","l":"spectinomycin","na":3,"nb":1,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"],["proteintraitsmech%3ABIOLIP_SCM","SCM-binding site"]],"b":[["mapped/Spectinomycin.yaml","Spectinomycin"]]},{"id":"CHEBI:100246","l":"norfloxacin","na":2,"nb":1,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"]],"b":[["mapped/Norfloxacin.yaml","Norfloxacin"]]},{"id":"CHEBI:10357","l":"","na":2,"nb":1,"a":[["EC%3A4.2.3.57","(-)-beta-caryophyllene synthase"],["RHEA%3A28294","(2E,6E)-farnesyl diphosphate = (-)-(E)-beta-caryophyllene + diphosphate"]],"b":[["mapped/Caryophyllene_T.yaml","Caryophyllene [T(-)]"]]},{"id":"CHEBI:14336","l":"glycerol 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water"]]},{"id":"CHEBI:15420","l":"","na":2,"nb":1,"a":[["EC%3A1.1.1.144","perillyl-alcohol dehydrogenase"],["RHEA%3A10664","perillyl alcohol + NAD(+) = perillyl aldehyde + NADH + H(+)"]],"b":[["mapped/Perillyl_Alcohol.yaml","Perillyl Alcohol"]]},{"id":"CHEBI:15748","l":"D-glucuronate","na":2,"nb":1,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A1.B.25","The Outer Membrane Porin (Opr) Family"]],"b":[["mapped/D-glucuronate.yaml","D-glucuronate"]]},{"id":"CHEBI:15767","l":"","na":2,"nb":1,"a":[["EC%3A4.5.1.3","dichloromethane dehalogenase"],["RHEA%3A15397","dichloromethane + H2O = formaldehyde + 2 chloride + 2 H(+)"]],"b":[["mapped/Methylene_Chloride.yaml","methylene chloride"]]},{"id":"CHEBI:15824","l":"D-fructose","na":2,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A4.A.1","The PTS Glucose-Glucoside (Glc) 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+ H(+)"]],"b":[["mapped/Trithionate.yaml","Trithionate"]]},{"id":"CHEBI:16011","l":"","na":2,"nb":1,"a":[["EC%3A3.1.1.60","bis(2-ethylhexyl)phthalate esterase"],["RHEA%3A15529","bis(2-ethylhexyl)phthalate + H2O = 2-ethylhexan-1-ol + 2-ethylhexyl phthalate + H(+)"]],"b":[["mapped/2-Ethylhexanol.yaml","2-Ethylhexanol"]]},{"id":"CHEBI:16077","l":"","na":2,"nb":1,"a":[["TCDB%3A1.B.96","The Chloroplast Outer Envelope Porin 40 (OEP40) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"]],"b":[["mapped/Glucose_1-phosphate.yaml","Glucose 1-phosphate"]]},{"id":"CHEBI:16119","l":"shikimic acid","na":1,"nb":2,"a":[["proteintraitsmech%3ABIOLIP_SKM","SKM-binding site"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Shikimic_Acid.yaml","Shikimic Acid"]]},{"id":"CHEBI:16133","l":"not class CHEBI:23495","na":2,"nb":1,"a":[["EC%3A1.1.1.163","cyclopentanol dehydrogenase"],["RHEA%3A11728","cyclopentanol + NAD(+) = cyclopentanone + NADH + H(+)"]],"b":[["mapped/CyclopentanolCO2.yaml","Cyclopentanol+CO2"]]},{"id":"CHEBI:16136","l":"hydrogen sulfide","na":1,"nb":2,"a":[["MCSA%3A398","sulfite reductase (NADPH)"]],"b":[["mapped/Hydrogen_Sulfide.yaml","Hydrogen sulfide"],["mapped/Sulfur.yaml","Sulfur"]]},{"id":"CHEBI:16196","l":"oleic acid","na":2,"nb":1,"a":[["TCDB%3A9.A.76","The Omega3 Fatty Acid Desaturase 3/Putative Transporter (FAD3) Family"],["proteintraitsmech%3ABIOLIP_OLA","OLA-binding site"]],"b":[["mapped/Oleic_Acid.yaml","Oleic acid"]]},{"id":"CHEBI:16324","l":"","na":2,"nb":1,"a":[["EC%3A1.10.3.6","rifamycin-B oxidase"],["RHEA%3A11292","rifamycin B + O2 + 2 H(+) = rifamycin O + H2O2"]],"b":[["mapped/Rifamycin_O.yaml","Rifamycin O"]]},{"id":"CHEBI:16349","l":"L-citrulline","na":1,"nb":2,"a":[["proteintraitsmech%3ABIOLIP_CIR","CIR-binding 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(configuration-retaining)"],["EC%3A3.1.3.58","sugar-terminal-phosphatase"],["EC%3A3.1.3.9","glucose-6-phosphatase"],["EC%3A3.2.1.10","oligo-1,6-glucosidase"],["EC%3A3.2.1.219","palatinase"],["EC%3A3.2.1.28","alpha,alpha-trehalase"]],"b":[["mapped/Alpha-d-glucose.yaml","alpha-D-Glucose"],["mapped/Glucose.yaml","Glucose"],["mapped/Glucose_Xylose.yaml","Glucose + Xylose"]]},{"id":"CHEBI:17437","l":"dimethyl sulfide","na":21,"nb":3,"a":[["EC%3A1.14.13.131","dissimilatory dimethyl-sulfide monooxygenase"],["EC%3A1.14.13.245","assimilatory dimethylsulfide S-monooxygenase"],["EC%3A1.8.2.4","dimethyl sulfide:cytochrome c2 reductase"],["EC%3A1.8.5.3","respiratory dimethylsulfoxide reductase"],["EC%3A2.1.1.19","trimethylsulfonium--tetrahydrofolate N-methyltransferase"],["EC%3A2.1.1.334","methanethiol S-methyltransferase"]],"b":[["mapped/Dimethyl_Sulfide.yaml","Dimethyl 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3C"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/Glycine.yaml","Glycine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16808","l":"2-dehydro-D-gluconate","na":12,"nb":3,"a":[["EC%3A1.1.1.215","gluconate 2-dehydrogenase"],["EC%3A1.1.1.274","2,5-didehydrogluconate reductase (2-dehydro-D-gluconate-forming)"],["EC%3A1.1.99.3","gluconate 2-dehydrogenase (acceptor)"],["EC%3A1.1.99.4","dehydrogluconate dehydrogenase"],["EC%3A2.7.1.13","dehydrogluconokinase"],["RHEA%3A12368","2-dehydro-D-gluconate + A = 2,5-didehydro-D-gluconate + AH2"]],"b":[["mapped/2-dehydro-D-gluconate.yaml","2-dehydro-D-gluconate"],["mapped/Potassium_2-dehydro-D-gluconate.yaml","Potassium 2-dehydro-D-gluconate"],["mapped/Potassium_2-ketogluconate.yaml","Potassium 2-ketogluconate"]]},{"id":"CHEBI:16977","l":"L-alanine","na":11,"nb":3,"a":[["ARO%3A3004943","cycloserine resistant ald"],["ARO%3A3004946","cycloserine resistant alr"],["ARO%3A3004945","Mycobacterium tuberculosis ald mutations confer resistance to cycloserine"],["ARO%3A3004947","Mycobacterium tuberculosis alr with mutation conferring resistance to cycloserine"],["MCSA%3A609","alpha-lytic endopeptidase"],["MCSA%3A238","assemblin"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-alanine.yaml","L-Alanine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:58143","l":"5-dehydro-D-gluconate","na":10,"nb":3,"a":[["EC%3A1.1.1.264","L-idonate 5-dehydrogenase [NAD(P)(+)]"],["EC%3A1.1.1.366","L-idonate 5-dehydrogenase (NAD(+))"],["EC%3A1.1.1.69","gluconate 5-dehydrogenase"],["RHEA%3A30103","2,5-didehydro-D-gluconate + NADH + H(+) = 5-dehydro-D-gluconate + NAD(+)"],["RHEA%3A28819","5-dehydro-D-gluconate(in) + H(+)(in) = 5-dehydro-D-gluconate(out) + H(+)(out)"],["RHEA%3A27634","5-dehydro-D-gluconate + NADP(+) = 2,5-didehydro-D-gluconate + NADPH + H(+)"]],"b":[["mapped/5-dehydro-D-gluconate.yaml","5-dehydro-D-gluconate"],["mapped/Potassium_5-dehydro-D-gluconate.yaml","Potassium 5-dehydro-D-gluconate"],["mapped/Potassium_5-ketogluconate.yaml","Potassium 5-ketogluconate"]]},{"id":"CHEBI:18167","l":"alpha-maltose","na":9,"nb":3,"a":[["EC%3A5.1.3.21","maltose epimerase"],["EC%3A5.1.3.3","aldose 1-epimerase"],["RHEA%3A21228","alpha-maltose = beta-maltose"],["MCSA%3A479","4-alpha-glucanotransferase"],["MCSA%3A397","alpha-amylase"],["MCSA%3A905","glucan 1,4-alpha-maltohydrolase"]],"b":[["mapped/Maltose.yaml","Maltose"],["mapped/Maltose_2.yaml","maltose"],["mapped/Starch.yaml","Starch"]]},{"id":"CHEBI:33229","l":"vitamin (role)","na":3,"nb":9,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.21","The Solute:Sodium Symporter (SSS) Family"]],"b":[["mapped/4-Pyridoxic_Acid.yaml","4-Pyridoxic acid"],["mapped/Ca-folinate.yaml","Ca-folinate"],["mapped/Fad.yaml","FAD"],["mapped/Folinic_Acid.yaml","Folinic acid"],["mapped/L-Carnitine.yaml","L-Carnitine"],["mapped/Na-ascorbate.yaml","Na-ascorbate"]]},{"id":"CHEBI:17015","l":"riboflavin","na":3,"nb":8,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_17015","requires riboflavin"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["proteintraitsmech%3ABIOLIP_RBF","RBF-binding site"]],"b":[["mapped/ATCC_Wolfes_Vitamin_Mix.yaml","ATCC Wolfe's vitamin mix"],["mapped/DL_Vitamins.yaml","DL vitamins"],["mapped/Mc_vitamins.yaml","Mc_vitamins"],["mapped/Riboflavin.yaml","Riboflavin"],["mapped/Thauers_Vitamin_Mix.yaml","Thauer's vitamin mix"],["mapped/Thauers_Vitamin_Mix_No_Biotin.yaml","Thauer's vitamin mix no Biotin"]]},{"id":"CHEBI:17029","l":"chitin","na":8,"nb":3,"a":[["EC%3A2.4.1.16","chitin synthase"],["EC%3A3.5.1.41","chitin deacetylase"],["RHEA%3A85463","[(1->4)-N-acetyl-beta-D-glucosaminyl](n) = [(1->4)-N-acetyl-beta-D-glucosaminyl](n-1)-N-acetyl-alpha-D-glucosamine"],["RHEA%3A50672","[(1->4)-N-acetyl-beta-D-glucosaminyl](n) + H2O = [(1->4)-N-acetyl-beta-D-glucosaminyl](n-2) + N,N'-diacetylchitobiose"],["RHEA%3A85003","[(1->4)-N-acetyl-beta-D-glucosaminyl](n)-N-acetyl-alpha-D-glucosamine + H2O = [(1->4)-N-acetyl-beta-D-glucosaminyl](n) + N-acetyl-alpha-D-glucosamine"],["RHEA%3A10464","[(1->4)-N-acetyl-beta-D-glucosaminyl](n) + n H2O = chitosan + n acetate"]],"b":[["mapped/Chitin.yaml","Chitin"],["unmapped/Chitin_From_Shrimp_Shells.yaml","Chitin from shrimp shells"],["unmapped/Colloidal_Chitin.yaml","Colloidal chitin"]]},{"id":"CHEBI:18019","l":"L-lysine","na":8,"nb":3,"a":[["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A2.A.53","The Sulfate Permease (SulP) Family"],["MCSA%3A746","L-peptidase"],["MCSA%3A786","peptidyl-Lys metalloendopeptidase"],["MCSA%3A597","ubiquitinyl hydrolase 1 (peptidase C12 type)"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-lysine.yaml","L-Lysine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:27470","l":"folic acid","na":3,"nb":7,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_27470","requires folic acid"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["proteintraitsmech%3ABIOLIP_FOL","FOL-binding site"]],"b":[["mapped/ATCC_Wolfes_Vitamin_Mix.yaml","ATCC Wolfe's vitamin mix"],["mapped/DL_Vitamins.yaml","DL vitamins"],["mapped/Folic_Acid.yaml","Folic acid"],["mapped/Mc_vitamins.yaml","Mc_vitamins"],["mapped/Thauers_Vitamin_Mix.yaml","Thauer's vitamin mix"],["mapped/Thauers_Vitamin_Mix_No_Biotin.yaml","Thauer's vitamin mix no Biotin"]]},{"id":"CHEBI:17053","l":"L-aspartic acid","na":3,"nb":5,"a":[["MCSA%3A718","caspase-1"],["MCSA%3A599","dipeptidase E"],["proteintraitsmech%3ABIOLIP_ASP","ASP-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-Aspartic_Acid_Potassium_Salt.yaml","L-Aspartic acid potassium salt"],["mapped/L-Aspartic_Acid_Sodium_Salt_Monohydrate.yaml","L-Aspartic acid sodium salt monohydrate"],["mapped/L-aspartic_Acid.yaml","L-Aspartic acid"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16015","l":"L-glutamic acid","na":3,"nb":4,"a":[["MCSA%3A747","gamma-glutamyl hydrolase"],["proteintraitsmech%3ABIOLIP_GGL","GGL-binding site"],["proteintraitsmech%3ABIOLIP_GLU","GLU-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-Glutamic_Acid_Monopotassium_Salt_Monohydrate.yaml","L-Glutamic acid monopotassium salt monohydrate"],["mapped/L-glutamic_Acid.yaml","L-Glutamic acid"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17115","l":"L-serine","na":4,"nb":3,"a":[["MCSA%3A609","alpha-lytic endopeptidase"],["MCSA%3A238","assemblin"],["MCSA%3A688","classical-complement-pathway C3/C5 convertase"],["proteintraitsmech%3ABIOLIP_SER","SER-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-serine.yaml","L-Serine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17191","l":"L-isoleucine","na":4,"nb":3,"a":[["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.26","The Branched Chain Amino Acid:Cation Symporter (LIVCS) Family"],["proteintraitsmech%3ABIOLIP_ILE","ILE-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-isoleucine.yaml","L-Isoleucine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:18050","l":"L-glutamine","na":4,"nb":3,"a":[["MCSA%3A596","deuterolysin"],["MCSA%3A477","picornain 3C"],["MCSA%3A763","picornain 3C"],["proteintraitsmech%3ABIOLIP_GLN","GLN-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-glutamine.yaml","L-Glutamine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16467","l":"L-arginine","na":3,"nb":3,"a":[["MCSA%3A688","classical-complement-pathway C3/C5 convertase"],["MCSA%3A425","plasmin"],["MCSA%3A798","t-plasminogen activator"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-arginine.yaml","L-Arginine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16643","l":"L-methionine","na":3,"nb":3,"a":[["MCSA%3A917","methionyl aminopeptidase"],["MCSA%3A965","Viperin"],["proteintraitsmech%3ABIOLIP_MET","MET-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-methionine.yaml","L-Methionine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17203","l":"L-proline","na":3,"nb":3,"a":[["MCSA%3A403","astacin"],["MCSA%3A379","Xaa-Pro aminopeptidase"],["proteintraitsmech%3ABIOLIP_PRO","PRO-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-proline.yaml","L-Proline"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17295","l":"L-phenylalanine","na":3,"nb":3,"a":[["MCSA%3A595","scytalidopepsin B"],["MCSA%3A598","streptopain"],["proteintraitsmech%3ABIOLIP_PHE","PHE-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-phenylalanine.yaml","L-Phenylalanine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:30915","l":"2-oxoglutaric acid","na":3,"nb":3,"a":[["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"],["TCDB%3A2.A.56","The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family"],["proteintraitsmech%3ABIOLIP_AKG","AKG-binding site"]],"b":[["mapped/A-Ketoglutaric_Acid_Disodium_Salt_Hydrate.yaml","a-Ketoglutaric acid disodium salt hydrate"],["mapped/Alpha-ketoglutaric_Acid.yaml","alpha-ketoglutaric acid"],["mapped/Na2_Alpha-ketoglutarate.yaml","Na2 alpha-ketoglutarate"]]},{"id":"CHEBI:29034","l":"iron(3+)","na":376,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_29034","requires iron(3+)"],["EC%3A1.1.2.10","lanthanide-dependent methanol dehydrogenase"],["EC%3A1.1.2.11","glucoside 3-dehydrogenase (cytochrome c)"],["EC%3A1.1.2.2","mannitol dehydrogenase (cytochrome)"],["EC%3A1.1.2.3","L-lactate dehydrogenase (cytochrome)"],["EC%3A1.1.2.4","D-lactate dehydrogenase (cytochrome)"]],"b":[["mapped/Ferric_Iron.yaml","Ferric Iron"],["mapped/Ferrous_Ion.yaml","Ferrous Ion"]]},{"id":"CHEBI:17154","l":"nicotinamide","na":92,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_17154","requires nicotinamide"],["EC%3A2.1.1.1","nicotinamide N-methyltransferase"],["EC%3A2.3.1.286","protein acetyllysine N-acetyltransferase"],["EC%3A2.3.1.313","NAD-dependent lipoamidase"],["EC%3A2.4.2.12","nicotinamide phosphoribosyltransferase"],["EC%3A2.4.2.31","NAD(+)--protein-arginine ADP-ribosyltransferase"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Nicotinamide.yaml","Nicotinamide"]]},{"id":"CHEBI:16113","l":"cholesterol","na":82,"nb":2,"a":[["EC%3A1.1.3.6","cholesterol oxidase"],["EC%3A1.14.14.23","cholesterol 7alpha-monooxygenase"],["EC%3A1.14.14.25","cholesterol 24-hydroxylase"],["EC%3A1.14.15.6","cholesterol monooxygenase (side-chain-cleaving)"],["EC%3A1.14.19.21","cholesterol 7-desaturase"],["EC%3A1.14.99.38","cholesterol 25-monooxygenase"]],"b":[["mapped/Cholesterol_Lipid_Concentrate.yaml","cholesterol lipid concentrate"],["mapped/cholesterol.yaml","cholesterol"]]},{"id":"CHEBI:15354","l":"choline","na":78,"nb":2,"a":[["EC%3A1.1.3.17","choline oxidase"],["EC%3A1.1.99.1","choline dehydrogenase"],["EC%3A1.14.15.7","choline monooxygenase"],["EC%3A2.3.1.6","choline O-acetyltransferase"],["EC%3A2.3.1.91","sinapoylglucose--choline O-sinapoyltransferase"],["EC%3A2.7.1.32","choline kinase"]],"b":[["mapped/Choline.yaml","Choline"],["unmapped/Cholinium_Alpha_Ketoglutarate.yaml","Cholinium alpha ketoglutarate"]]},{"id":"CHEBI:16763","l":"2-oxobutanoate","na":51,"nb":2,"a":[["EC%3A1.1.1.n5","3-methylmalate dehydrogenase"],["EC%3A1.2.7.1","pyruvate synthase"],["EC%3A2.2.1.6","acetolactate synthase"],["EC%3A2.3.3.6","2-ethylmalate synthase"],["EC%3A2.6.1.44","alanine--glyoxylate transaminase"],["EC%3A3.5.99.10","2-iminobutanoate/2-iminopropanoate deaminase"]],"b":[["mapped/2-oxobutanoate.yaml","2-oxobutanoate"],["mapped/2-oxobutyric_Acid_Sodium_Salt.yaml","2-oxobutyric acid sodium salt"]]},{"id":"CHEBI:16870","l":"choline alfoscerate","na":48,"nb":2,"a":[["EC%3A3.1.1.5","lysophospholipase"],["EC%3A3.1.4.2","glycerophosphocholine phosphodiesterase"],["EC%3A3.1.4.38","glycerophosphocholine cholinephosphodiesterase"],["EC%3A3.3.2.2","lysoplasmalogenase"],["RHEA%3A40835","1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine + 2 H2O = sn-glycerol 3-phosphocholine + 2 (9Z)-octadecenoate + 2 H(+)"],["RHEA%3A40975","1,2-dihexadecanoyl-sn-glycero-3-phosphocholine + 2 H2O = sn-glycerol 3-phosphocholine + 2 hexadecanoate + 2 H(+)"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Sn-glycero-3-phosphocholine.yaml","sn-glycero-3-phosphocholine"]]},{"id":"CHEBI:17568","l":"uracil","na":47,"nb":2,"a":[["EC%3A1.14.11.10","pyrimidine-deoxynucleoside 1'-dioxygenase"],["EC%3A1.14.99.46","pyrimidine monooxygenase"],["EC%3A1.17.99.4","uracil/thymine dehydrogenase"],["EC%3A1.3.1.1","dihydrouracil dehydrogenase (NAD(+))"],["EC%3A1.3.1.2","dihydropyrimidine dehydrogenase (NADP(+))"],["EC%3A1.3.3.7","dihydrouracil oxidase"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Uracil.yaml","Uracil"]]},{"id":"CHEBI:16708","l":"adenine","na":44,"nb":2,"a":[["EC%3A1.5.99.12","cytokinin dehydrogenase"],["EC%3A2.4.2.28","S-methyl-5'-thioadenosine phosphorylase"],["EC%3A2.4.2.52","triphosphoribosyl-dephospho-CoA synthase"],["EC%3A2.4.2.57","AMP phosphorylase"],["EC%3A2.4.2.7","adenine phosphoribosyltransferase"],["EC%3A2.4.99.17","S-adenosylmethionine:tRNA ribosyltransferase-isomerase"]],"b":[["mapped/Adenine.yaml","Adenine"],["mapped/Adenine_Hydrochloride_Hydrate.yaml","Adenine hydrochloride hydrate"]]},{"id":"CHEBI:506227","l":"N-acetyl-D-glucosamine","na":44,"nb":2,"a":[["EC%3A1.1.3.29","N-acylhexosamine oxidase"],["EC%3A2.3.1.3","glucosamine N-acetyltransferase"],["EC%3A2.4.1.211","1,3-beta-galactosyl-N-acetylhexosamine phosphorylase"],["EC%3A2.4.1.280","N,N'-diacetylchitobiose phosphorylase"],["EC%3A2.4.1.320","1,4-beta-mannosyl-N-acetylglucosamine phosphorylase"],["EC%3A2.4.1.90","N-acetyllactosamine synthase"]],"b":[["mapped/N-acetyl-d-glucosamine.yaml","N-Acetyl-D-glucosamine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16335","l":"adenosine","na":35,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16335","requires vitamin B12"],["EC%3A1.1.3.39","nucleoside oxidase (H2O2-forming)"],["EC%3A2.7.1.114","AMP--thymidine kinase"],["EC%3A2.7.1.20","adenosine kinase"],["EC%3A3.13.2.1","adenosylhomocysteinase"],["EC%3A3.13.2.3","(R)-S-adenosyl-L-methionine hydrolase (adenosine-forming)"]],"b":[["mapped/Adenosine.yaml","Adenosine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17750","l":"glycine betaine","na":33,"nb":2,"a":[["EC%3A1.1.3.17","choline oxidase"],["EC%3A1.13.11.90","[1-hydroxy-2-(trimethylamino)ethyl]phosphonate dioxygenase (glycine- betaine-forming)"],["EC%3A1.14.13.251","glycine betaine monooxygenase"],["EC%3A1.2.1.8","betaine-aldehyde dehydrogenase"],["EC%3A1.21.4.4","betaine reductase"],["EC%3A2.1.1.157","sarcosine/dimethylglycine N-methyltransferase"]],"b":[["mapped/Betaine_Hydrochloride.yaml","Betaine hydrochloride"],["mapped/Betaine_X_H2o.yaml","Betaine x H2O"]]},{"id":"CHEBI:17596","l":"inosine","na":32,"nb":2,"a":[["EC%3A1.1.3.28","nucleoside oxidase"],["EC%3A2.7.1.73","inosine kinase"],["EC%3A3.1.3.99","IMP-specific 5'-nucleotidase"],["EC%3A3.13.1.9","S-inosyl-L-homocysteine hydrolase"],["EC%3A3.2.2.2","inosine nucleosidase"],["EC%3A3.5.4.4","adenosine deaminase"]],"b":[["mapped/Inosine.yaml","Inosine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17712","l":"9H-xanthine","na":32,"nb":2,"a":[["EC%3A1.14.11.48","xanthine dioxygenase"],["EC%3A1.14.13.128","7-methylxanthine demethylase"],["EC%3A1.14.13.179","methylxanthine N(3)-demethylase"],["EC%3A1.17.1.4","xanthine dehydrogenase"],["EC%3A1.17.3.2","xanthine oxidase"],["EC%3A2.4.2.1","purine-nucleoside phosphorylase"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Xanthine.yaml","Xanthine"]]},{"id":"CHEBI:17368","l":"hypoxanthine","na":28,"nb":2,"a":[["EC%3A1.17.1.4","xanthine dehydrogenase"],["EC%3A1.17.3.2","xanthine oxidase"],["EC%3A2.4.2.44","S-methyl-5'-thioinosine phosphorylase"],["EC%3A2.4.2.8","hypoxanthine phosphoribosyltransferase"],["EC%3A3.2.2.12","inosinate nucleosidase"],["EC%3A3.2.2.2","inosine nucleosidase"]],"b":[["mapped/Hypoxanthine.yaml","Hypoxanthine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16235","l":"guanine","na":27,"nb":2,"a":[["EC%3A2.4.2.1","purine-nucleoside phosphorylase"],["EC%3A2.4.2.15","guanosine phosphorylase"],["EC%3A2.4.2.29","tRNA-guanosine(34) preQ1 transglycosylase"],["EC%3A2.4.2.48","tRNA-guanine(15) transglycosylase"],["EC%3A2.4.2.64","tRNA-guanosine(34) queuine transglycosylase"],["EC%3A2.4.2.8","hypoxanthine phosphoribosyltransferase"]],"b":[["mapped/Guanine.yaml","Guanine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16704","l":"uridine","na":26,"nb":2,"a":[["EC%3A1.14.11.3","pyrimidine-deoxynucleoside 2'-dioxygenase"],["EC%3A2.4.2.2","pyrimidine-nucleoside phosphorylase"],["EC%3A2.4.2.3","uridine phosphorylase"],["EC%3A2.7.1.48","uridine/cytidine kinase"],["EC%3A3.2.2.3","uridine nucleosidase"],["EC%3A3.2.2.8","ribosylpyrimidine nucleosidase"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Uridine.yaml","Uridine"]]},{"id":"CHEBI:17562","l":"cytidine","na":25,"nb":2,"a":[["EC%3A2.7.1.213","cytidine kinase"],["EC%3A2.7.1.48","uridine/cytidine kinase"],["EC%3A3.1.3.91","7-methylguanosine nucleotidase"],["EC%3A3.2.2.8","ribosylpyrimidine nucleosidase"],["EC%3A3.5.1.135","N(4)-acetylcytidine amidohydrolase"],["EC%3A3.5.4.5","cytidine deaminase"]],"b":[["mapped/Cytidine.yaml","Cytidine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:26833","l":"sulfur atom","na":24,"nb":2,"a":[["EC%3A1.12.98.4","sulfhydrogenase"],["EC%3A1.13.11.55","sulfur oxygenase/reductase"],["EC%3A1.8.1.18","NAD(P)H sulfur oxidoreductase (CoA-dependent)"],["EC%3A1.8.1.19","sulfide dehydrogenase"],["EC%3A1.8.2.3","sulfide-cytochrome-c reductase (flavocytochrome c)"],["EC%3A1.8.2.7","thiocyanate desulfurase"]],"b":[["mapped/Sulfur.yaml","Sulfur"],["mapped/Yeast_Extract_Sulfur.yaml","Yeast Extract + Sulfur"]]},{"id":"CHEBI:24996","l":"lactate","na":23,"nb":2,"a":[["EC%3A1.1.1.436","lactate dehydrogenase (NAD(+),ferredoxin)"],["EC%3A3.5.1.124","protein deglycase"],["RHEA%3A57300","an N(2)-(1-hydroxy-2-oxopropyl)-2'-deoxyguanosine in DNA + H2O = a 2'-deoxyguanosine in DNA + lactate + H(+)"],["RHEA%3A57288","an N(2)-(1-hydroxy-2-oxopropyl)-guanosine in RNA + H2O = a guanosine in RNA + lactate + H(+)"],["RHEA%3A46964","lactate + 2 reduced [2Fe-2S]-[ferredoxin] + 2 NAD(+) = 2 oxidized [2Fe-2S]-[ferredoxin] + pyruvate + 2 NADH"],["RHEA%3A57244","N(2)-(1-hydroxy-2-oxopropyl)-dGTP + H2O = lactate + dGTP + H(+)"]],"b":[["mapped/Glucose_Lactate.yaml","Glucose + Lactate"],["mapped/Lactate.yaml","Lactate"]]},{"id":"CHEBI:18391","l":"D-gluconate","na":21,"nb":2,"a":[["EC%3A1.1.1.215","gluconate 2-dehydrogenase"],["EC%3A1.1.1.69","gluconate 5-dehydrogenase"],["EC%3A1.1.99.3","gluconate 2-dehydrogenase (acceptor)"],["EC%3A2.4.1.321","cellobionic acid phosphorylase"],["EC%3A2.7.1.12","gluconokinase"],["EC%3A3.1.1.17","gluconolactonase"]],"b":[["mapped/D-gluconate.yaml","D-gluconate"],["mapped/Yeast_Extract_Gluconate.yaml","Yeast Extract + Gluconate"]]},{"id":"CHEBI:29108","l":"calcium(2+)","na":21,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_29108","requires calcium(2+)"],["EC%3A1.13.12.24","calcium-regulated photoprotein"],["EC%3A7.2.2.10","P-type Ca(2+) transporter"],["RHEA%3A72631","3 Li(+)(out) + Ca(2+)(in) = 3 Li(+)(in) + Ca(2+)(out)"],["RHEA%3A55884","[aequorin] + 3 Ca(2+) = [aequorin]--dioxetanone"],["RHEA%3A55888","[aequorin]--dioxetanone = excited state-[aequorin] + CO2"]],"b":[["mapped/Calcium%282%29.yaml","Calcium(2+)"],["mapped/Calcium.yaml","Calcium"]]},{"id":"CHEBI:17821","l":"thymine","na":20,"nb":2,"a":[["EC%3A1.14.11.6","thymine dioxygenase"],["EC%3A1.14.99.46","pyrimidine monooxygenase"],["EC%3A1.17.99.4","uracil/thymine dehydrogenase"],["EC%3A1.3.1.1","dihydrouracil dehydrogenase (NAD(+))"],["EC%3A1.3.1.2","dihydropyrimidine dehydrogenase (NADP(+))"],["EC%3A2.4.2.2","pyrimidine-nucleoside phosphorylase"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Thymine.yaml","Thymine"]]},{"id":"CHEBI:18420","l":"","na":20,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_18420","requires magnesium(2+)"],["EC%3A4.99.1.10","magnesium dechelatase"],["EC%3A6.6.1.1","magnesium chelatase"],["EC%3A7.2.2.14","P-type Mg(2+) transporter"],["RHEA%3A52788","chlorophyll a + 2 H(+) = pheophytin a + Mg(2+)"],["RHEA%3A52792","chlorophyllide a + 2 H(+) = pheophorbide a + Mg(2+)"]],"b":[["mapped/Magnesium%282%29.yaml","Magnesium(2+)"],["mapped/Magnesium.yaml","Magnesium"]]},{"id":"CHEBI:16750","l":"guanosine","na":19,"nb":2,"a":[["EC%3A2.4.2.1","purine-nucleoside phosphorylase"],["EC%3A2.4.2.15","guanosine phosphorylase"],["EC%3A2.7.1.73","inosine kinase"],["EC%3A3.5.4.15","guanosine deaminase"],["RHEA%3A27862","3'-GMP + H2O = guanosine + phosphate"],["RHEA%3A27714","GMP + H2O = guanosine + phosphate"]],"b":[["mapped/Guanosine.yaml","Guanosine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:18385","l":"thiamine(1+)","na":19,"nb":2,"a":[["EC%3A1.1.3.23","thiamine oxidase"],["EC%3A2.5.1.2","thiamine pyridinylase"],["EC%3A2.7.1.89","thiamine kinase"],["EC%3A2.7.6.2","thiamine diphosphokinase"],["EC%3A3.1.3.100","thiamine phosphate phosphatase"],["EC%3A3.5.99.2","aminopyrimidine aminohydrolase"]],"b":[["mapped/DL_Vitamins.yaml","DL vitamins"],["mapped/Thiamine.yaml","Thiamine"]]},{"id":"CHEBI:16040","l":"cytosine","na":17,"nb":2,"a":[["EC%3A2.4.2.57","AMP phosphorylase"],["EC%3A3.2.2.10","pyrimidine-5'-nucleotide nucleosidase"],["EC%3A3.2.2.8","ribosylpyrimidine nucleosidase"],["EC%3A3.5.1.135","N(4)-acetylcytidine amidohydrolase"],["EC%3A3.5.4.1","cytosine deaminase"],["RHEA%3A30075","CMP + H2O = cytosine + D-ribose 5-phosphate"]],"b":[["mapped/Cytosine.yaml","Cytosine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16899","l":"D-mannitol","na":17,"nb":2,"a":[["EC%3A1.1.1.138","mannitol 2-dehydrogenase (NADP(+))"],["EC%3A1.1.1.255","mannitol dehydrogenase"],["EC%3A1.1.1.67","mannitol 2-dehydrogenase"],["EC%3A1.1.2.2","mannitol dehydrogenase (cytochrome)"],["EC%3A1.1.3.40","D-mannitol oxidase"],["EC%3A2.7.1.197","protein-N(pi)-phosphohistidine--D-mannitol phosphotransferase"]],"b":[["mapped/D-mannitol.yaml","D-Mannitol"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:28885","l":"butan-1-ol","na":16,"nb":2,"a":[["EC%3A1.1.2.9","1-butanol dehydrogenase (cytochrome c)"],["EC%3A1.1.5.11","1-butanol dehydrogenase (quinone)"],["EC%3A1.14.13.230","butane monooxygenase (soluble)"],["RHEA%3A64672","2-(methylsulfanyl)acetyl-CoA + butan-1-ol = butyl 2-(methylsulfanyl)acetate + CoA"],["RHEA%3A64676","3-(methylsulfanyl)propanoyl-CoA + butan-1-ol = butyl 3-(methylsulfanyl)propanoate + CoA"],["RHEA%3A43432","butan-1-ol + 2 Fe(III)-[cytochrome c] = butanal + 2 Fe(II)-[cytochrome c] + 2 H(+)"]],"b":[["mapped/1-butanolCO2.yaml","1-butanol+CO2"],["mapped/Butanol.yaml","Butanol"]]},{"id":"CHEBI:29032","l":"(R)-pantothenate","na":15,"nb":2,"a":[["EC%3A2.7.1.33","pantothenate kinase"],["EC%3A3.5.1.22","pantothenase"],["EC%3A3.5.1.92","pantetheine hydrolase"],["EC%3A6.3.2.1","pantoate--beta-alanine ligase (AMP-forming)"],["EC%3A6.3.2.44","pantoate--beta-alanine ligase (ADP-forming)"],["RHEA%3A68332","(R)-4'-phosphopantothenate + H2O = (R)-pantothenate + phosphate"]],"b":[["mapped/Ca-pantothenate.yaml","Ca-pantothenate"],["mapped/Calcium_Pantothenate.yaml","Calcium pantothenate"]]},{"id":"CHEBI:17256","l":"","na":13,"nb":2,"a":[["EC%3A2.7.1.76","deoxyadenosine kinase"],["EC%3A3.5.4.4","adenosine deaminase"],["RHEA%3A23452","2'-deoxyadenosine + ATP = dAMP + ADP + H(+)"],["RHEA%3A28190","2'-deoxyadenosine + H2O + H(+) = 2'-deoxyinosine + NH4(+)"],["RHEA%3A75691","2'-deoxyadenosine(in) = 2'-deoxyadenosine(out)"],["RHEA%3A29979","2'-deoxyadenosine(in) + H(+)(in) = 2'-deoxyadenosine(out) + H(+)(out)"]],"b":[["mapped/2-Deoxyadenosine_Monohydrate.yaml","2-Deoxyadenosine monohydrate"],["mapped/2-deoxyadenosine.yaml","2-deoxyadenosine"]]},{"id":"CHEBI:29987","l":"","na":13,"nb":2,"a":[["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.23","The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family"],["TCDB%3A2.A.47","The Divalent Anion:Na+ Symporter (DASS) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A1.A.24","The Gap Junction-forming Connexin (Connexin) Family"]],"b":[["mapped/Aspartate.yaml","Aspartate"],["mapped/Glutamate.yaml","Glutamate"]]},{"id":"CHEBI:25107","l":"''magnesium atom''","na":11,"nb":2,"a":[["proteintraitsmech%3AMETALPDB_MG_DECANUCLEAR","decanuclear magnesium site"],["proteintraitsmech%3AMETALPDB_MG_DINUCLEAR","dinuclear magnesium site"],["proteintraitsmech%3AMETALPDB_MG_HEPTANUCLEAR","heptanuclear magnesium site"],["proteintraitsmech%3AMETALPDB_MG_HEXANUCLEAR","hexanuclear magnesium site"],["proteintraitsmech%3AMETALPDB_MG_MONONUCLEAR","mononuclear magnesium site"],["proteintraitsmech%3AMETALPDB_MG_MULTINUCLEAR","multinuclear magnesium site"]],"b":[["mapped/Magnesium%282%29.yaml","Magnesium(2+)"],["mapped/Magnesium.yaml","Magnesium"]]},{"id":"CHEBI:22984","l":"''calcium atom''","na":10,"nb":2,"a":[["TCDB%3A1.A.10","The Glutamate-gated Ion Channel (GIC) Family of Neurotransmitter Receptors"],["TCDB%3A1.A.77","The Mg2+/Ca2+ Uniporter (MCU) Family"],["proteintraitsmech%3AMETALPDB_CA_DINUCLEAR","dinuclear calcium site"],["proteintraitsmech%3AMETALPDB_CA_HEPTANUCLEAR","heptanuclear calcium site"],["proteintraitsmech%3AMETALPDB_CA_HEXANUCLEAR","hexanuclear calcium site"],["proteintraitsmech%3AMETALPDB_CA_MONONUCLEAR","mononuclear calcium site"]],"b":[["mapped/Calcium%282%29.yaml","Calcium(2+)"],["mapped/Calcium.yaml","Calcium"]]},{"id":"CHEBI:30924","l":"","na":10,"nb":2,"a":[["EC%3A1.1.1.93","tartrate dehydrogenase"],["EC%3A4.1.1.73","tartrate decarboxylase"],["EC%3A4.2.1.32","L(+)-tartrate dehydratase"],["EC%3A5.1.2.5","tartrate epimerase"],["RHEA%3A22212","(2R,3R)-tartrate = (2R,3S)-tartrate"],["RHEA%3A13317","(2R,3R)-tartrate + H(+) = (R)-glycerate + CO2"]],"b":[["mapped/Na-tartrate.yaml","Na-tartrate"],["mapped/Sodium_Tartrate.yaml","Sodium tartrate"]]},{"id":"CHEBI:18107","l":"xanthosine","na":9,"nb":2,"a":[["EC%3A2.1.1.158","7-methylxanthosine synthase"],["EC%3A2.4.2.1","purine-nucleoside phosphorylase"],["EC%3A3.5.4.15","guanosine deaminase"],["RHEA%3A12861","guanosine + H2O + H(+) = xanthosine + NH4(+)"],["RHEA%3A27994","xanthosine + H2O = D-ribose + xanthine"],["RHEA%3A28939","xanthosine(in) + H(+)(in) = xanthosine(out) + H(+)(out)"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Xanthosine.yaml","Xanthosine"]]},{"id":"CHEBI:10642","l":"","na":8,"nb":2,"a":[["EC%3A1.1.1.370","scyllo-inositol 2-dehydrogenase (NAD(+))"],["EC%3A1.1.1.371","scyllo-inositol 2-dehydrogenase (NADP(+))"],["RHEA%3A82131","scyllo-inositol 1-phosphate + H2O = scyllo-inositol + phosphate"],["RHEA%3A17613","scyllo-inositol + NAD(+) = scyllo-inosose + NADH + H(+)"],["RHEA%3A39063","scyllo-inositol + NADP(+) = scyllo-inosose + NADPH + H(+)"],["RHEA%3A72991","scyllo-inositol(out) + 2 Na(+)(out) = scyllo-inositol(in) + 2 Na(+)(in)"]],"b":[["mapped/M-inositol.yaml","m-Inositol"],["mapped/Myo-inositol.yaml","myo-Inositol"]]},{"id":"CHEBI:35195","l":"surfactant","na":2,"nb":8,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A1.A.16","The Formate-Nitrite Transporter (FNT) Family"]],"b":[["mapped/Benzalkonium_Chloride.yaml","Benzalkonium Chloride"],["mapped/Cetrimonium_Bromide.yaml","Cetrimonium bromide"],["mapped/Na-laurate.yaml","Na-laurate"],["mapped/Na-stearate.yaml","Na-stearate"],["mapped/Rhamnolipid.yaml","Rhamnolipid"],["mapped/Sodium_Dodecyl_Sulfate.yaml","Sodium Dodecyl Sulfate"]]},{"id":"CHEBI:4735","l":"ethylenediaminetetraacetic acid","na":2,"nb":8,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["proteintraitsmech%3ABIOLIP_EDT","EDT-binding site"]],"b":[["mapped/ATCC_Wolfes_Mineral_Mix.yaml","ATCC Wolfe's mineral mix"],["mapped/EDTA_Tetrasodium_Tetrahydrate_Salt.yaml","EDTA tetrasodium tetrahydrate salt"],["mapped/Edta.yaml","EDTA"],["mapped/Edta_Acid_Form.yaml","EDTA (acid form)"],["mapped/UW_Concentrated_Base.yaml","UW concentrated base"],["mapped/UW_Concentrated_Base_No_Mo.yaml","UW concentrated base no Mo"]]},{"id":"CHEBI:9532","l":"thiamine(1+) diphosphate","na":8,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_9532","requires thiamine(1+) diphosphate"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/02_Thiamine_Pyrophosphate.yaml","0.2% Thiamine pyrophosphate"],["mapped/Thiamine_pyrophosphate.yaml","Thiamine pyrophosphate"]]},{"id":"CHEBI:15940","l":"nicotinic acid","na":2,"nb":7,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_15940","requires nicotinic acid"],["proteintraitsmech%3ABIOLIP_NIO","NIO-binding site"]],"b":[["mapped/ATCC_Wolfes_Vitamin_Mix.yaml","ATCC Wolfe's vitamin mix"],["mapped/DL_Vitamins.yaml","DL vitamins"],["mapped/Mc_vitamins.yaml","Mc_vitamins"],["mapped/Nicotinic_Acid.yaml","Nicotinic acid"],["mapped/Thauers_Vitamin_Mix.yaml","Thauer's vitamin mix"],["mapped/Thauers_Vitamin_Mix_No_Biotin.yaml","Thauer's vitamin mix no Biotin"]]},{"id":"CHEBI:17824","l":"propan-2-ol","na":7,"nb":2,"a":[["EC%3A1.1.1.80","isopropanol dehydrogenase (NADP(+))"],["EC%3A1.14.13.227","propane 2-monooxygenase"],["RHEA%3A62196","propan-2-ol + 2 Fe(III)-[cytochrome c] = acetone + 2 Fe(II)-[cytochrome c] + 2 H(+)"],["RHEA%3A41984","propan-2-ol + NAD(+) = acetone + NADH + H(+)"],["RHEA%3A21792","propan-2-ol + NADP(+) = acetone + NADPH + H(+)"],["RHEA%3A49992","propane + NADH + O2 + H(+) = propan-2-ol + NAD(+) + H2O"]],"b":[["mapped/2-propanolCO2.yaml","2-propanol+CO2"],["mapped/Isopropyl_Alcohol.yaml","Isopropyl alcohol"]]},{"id":"CHEBI:28831","l":"","na":7,"nb":2,"a":[["RHEA%3A62204","1-propanol + 2 Fe(III)-[cytochrome c] = propanal + 2 Fe(II)-[cytochrome c] + 2 H(+)"],["RHEA%3A65468","1-propanol + acetyl-CoA = propyl acetate + CoA"],["RHEA%3A65476","1-propanol + butanoyl-CoA = propyl butanoate + CoA"],["RHEA%3A50704","1-propanol + NAD(+) = propanal + NADH + H(+)"],["RHEA%3A64712","1-propanol + NADP(+) = propanal + NADPH + H(+)"],["MCSA%3A407","carboxylesterase"]],"b":[["mapped/1-propanolCO2.yaml","1-propanol+CO2"],["mapped/Propan-1-ol.yaml","Propan-1-ol"]]},{"id":"CHEBI:30753","l":"4-aminobenzoic acid","na":2,"nb":7,"a":[["TCDB%3A2.A.71","The Folate-Biopterin Transporter (FBT) Family"],["proteintraitsmech%3ABIOLIP_PAB","PAB-binding site"]],"b":[["mapped/ATCC_Wolfes_Vitamin_Mix.yaml","ATCC Wolfe's vitamin mix"],["mapped/DL_Vitamins.yaml","DL vitamins"],["mapped/Mc_vitamins.yaml","Mc_vitamins"],["mapped/P-aminobenzoic_Acid.yaml","p-Aminobenzoic acid"],["mapped/Thauers_Vitamin_Mix.yaml","Thauer's vitamin mix"],["mapped/Thauers_Vitamin_Mix_No_Biotin.yaml","Thauer's vitamin mix no Biotin"]]},{"id":"CHEBI:15956","l":"biotin","na":2,"nb":6,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_15956","requires biotin"],["proteintraitsmech%3ABIOLIP_BTN","BTN-binding site"]],"b":[["mapped/ATCC_Wolfes_Vitamin_Mix.yaml","ATCC Wolfe's vitamin mix"],["mapped/Biotin.yaml","Biotin"],["mapped/DL_Vitamins.yaml","DL vitamins"],["mapped/Mc_vitamins.yaml","Mc_vitamins"],["mapped/Thauers_Vitamin_Mix.yaml","Thauer's vitamin mix"],["mapped/Wolfes_Vitamin_Mix.yaml","Wolfe's vitamin mix"]]},{"id":"CHEBI:18394","l":"6-O-alpha-D-glucopyranosyl-D-fructofuranose","na":6,"nb":2,"a":[["EC%3A3.2.1.219","palatinase"],["EC%3A5.4.99.11","isomaltulose synthase"],["RHEA%3A68808","6-O-alpha-D-glucopyranosyl-D-fructose + H2O = alpha-D-glucose + D-fructose"],["RHEA%3A24032","sucrose = 6-O-alpha-D-glucopyranosyl-D-fructose"],["TCDB%3A4.A.1","The PTS Glucose-Glucoside (Glc) Family"],["MCSA%3A582","isomaltulose synthase"]],"b":[["mapped/Palatinose.yaml","Palatinose"],["mapped/Palatinose_Hydrate.yaml","palatinose hydrate"]]},{"id":"CHEBI:28645","l":"beta-D-fructofuranose","na":6,"nb":2,"a":[["EC%3A2.7.1.3","ketohexokinase"],["EC%3A3.2.1.48","sucrose alpha-glucosidase"],["RHEA%3A18145","beta-D-fructose + ATP = beta-D-fructose 1-phosphate + ADP + H(+)"],["RHEA%3A33791","sucrose 6(F)-phosphate + H2O = beta-D-fructose + beta-D-glucose 6-phosphate"],["RHEA%3A33795","sucrose + H2O = beta-D-fructose + alpha-D-glucose"],["proteintraitsmech%3ABIOLIP_FRU","FRU-binding site"]],"b":[["mapped/Fructooligosaccharides_Fos.yaml","Fructooligosaccharides (FOS)"],["mapped/Fructose.yaml","Fructose"]]},{"id":"CHEBI:16856","l":"glutathione","na":4,"nb":2,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16856","requires glutathione"],["MCSA%3A359","lactoglutathione lyase"],["MCSA%3A32","lactoylglutathione lyase"],["proteintraitsmech%3ABIOLIP_GSH","GSH-binding site"]],"b":[["mapped/Glutathione.yaml","Glutathione"],["mapped/L-Glutathione.yaml","L-Glutathione"]]},{"id":"CHEBI:17895","l":"L-tyrosine","na":2,"nb":4,"a":[["MCSA%3A638","neurolysin"],["proteintraitsmech%3ABIOLIP_TYR","TYR-binding site"]],"b":[["mapped/DL-Tyrosine.yaml","DL-Tyrosine"],["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-tyrosine.yaml","L-Tyrosine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:24265","l":"","na":4,"nb":2,"a":[["TCDB%3A2.A.49","The Chloride Carrier/Channel (ClC) Family"],["TCDB%3A2.A.8","The Gluconate:H+ Symporter (GntP) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A4.A.6","The PTS Mannose-Fructose-Sorbose (Man) Family"]],"b":[["mapped/Gluconate.yaml","Gluconate"],["mapped/Yeast_Extract_Gluconate.yaml","Yeast Extract + Gluconate"]]},{"id":"CHEBI:28869","l":"menadione","na":4,"nb":2,"a":[["RHEA%3A35611","menadiol + 2 O2 = menadione + 2 superoxide + 2 H(+)"],["RHEA%3A69695","menadione + NADH + H(+) = menadiol + NAD(+)"],["RHEA%3A63492","menadione + NADPH + H(+) = menadiol + NADP(+)"],["proteintraitsmech%3ABIOLIP_VK3","VK3-binding site"]],"b":[["mapped/Menadione.yaml","Menadione"],["mapped/Menadione_Solution.yaml","Menadione solution"]]},{"id":"CHEBI:3508","l":"ceftazidime","na":4,"nb":2,"a":[["TCDB%3A8.A.213","The Bon Domain-containing Protein (Bon DP) Family"],["TCDB%3A1.B.1","The General Bacterial Porin (GBP) Family"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"],["TCDB%3A2.C.1","The TonB-ExbB-ExbD/TolA-TolQ-TolR Outer Membrane Receptor Energizers and Stabilizers (TonB/TolA) Family"]],"b":[["mapped/Ceftazidime.yaml","Ceftazidime"],["mapped/Ceftazidime_Hydrate.yaml","Ceftazidime hydrate"]]},{"id":"CHEBI:36361","l":"phosphorous acid","na":4,"nb":2,"a":[["EC%3A1.20.1.1","phosphite dehydrogenase"],["RHEA%3A86123","phosphite + AMP + NAD(+) = ADP + NADH + 2 H(+)"],["RHEA%3A13173","phosphite + NAD(+) + H2O = phosphate + NADH + 3 H(+)"],["RHEA%3A48972","phosphite(out) + ATP + H2O = phosphite(in) + ADP + phosphate + H(+)"]],"b":[["mapped/Phosphorous_Acid.yaml","phosphorous 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site"]],"b":[["mapped/Sodium_Succinate_Dibasic.yaml","Sodium succinate dibasic"],["mapped/Succinic_Acid.yaml","Succinic acid"]]},{"id":"CHEBI:16789","l":"aldehydo-D-lyxose","na":2,"nb":2,"a":[["EC%3A5.3.1.15","D-lyxose ketol-isomerase"],["RHEA%3A14201","D-lyxose = D-xylulose"]],"b":[["mapped/%282%29-D-lyxose.yaml","D-lyxose"],["mapped/D-_-lyxose.yaml","D-(-)-lyxose"]]},{"id":"CHEBI:17883","l":"hydrogen chloride","na":2,"nb":2,"a":[["MCSA%3A24","4-chlorobenzoyl-CoA dehalogenase"],["MCSA%3A348","chloromuconate cycloisomerase"]],"b":[["mapped/Hcl.yaml","HCl"],["mapped/Trace_Element_Solution_SL-10.yaml","Trace element solution SL-10"]]},{"id":"CHEBI:17909","l":"polysulfur","na":2,"nb":2,"a":[["EC%3A1.8.5.4","bacterial sulfide:quinone reductase"],["RHEA%3A30239","n a quinone + n hydrogen sulfide + n H(+) = polysulfur(n-2) + n a quinol"]],"b":[["mapped/Sulfur_Powder.yaml","Sulfur 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dehydrogenase"],["EC%3A1.1.99.2","L-2-hydroxyglutarate dehydrogenase"]],"b":[["mapped/Na2_Alpha-ketoglutarate.yaml","Na2 alpha-ketoglutarate"]]},{"id":"CHEBI:15361","l":"pyruvate","na":410,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_15361","requires pyruvate"],["EC%3A1.1.1.27","L-lactate dehydrogenase"],["EC%3A1.1.1.28","D-lactate dehydrogenase"],["EC%3A1.1.1.38","malate dehydrogenase (oxaloacetate-decarboxylating)"],["EC%3A1.1.1.39","malate dehydrogenase (decarboxylating)"],["EC%3A1.1.1.40","malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))"]],"b":[["mapped/Pyruvate.yaml","Pyruvate"]]},{"id":"CHEBI:29033","l":"iron(2+)","na":396,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_29033","requires iron(2+)"],["EC%3A1.1.2.10","lanthanide-dependent methanol dehydrogenase"],["EC%3A1.1.2.11","glucoside 3-dehydrogenase (cytochrome c)"],["EC%3A1.1.2.2","mannitol dehydrogenase (cytochrome)"],["EC%3A1.1.2.3","L-lactate dehydrogenase 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O-acetyltransferase"],["EC%3A2.8.3.21","L-carnitine CoA-transferase"]],"b":[["mapped/L-Carnitine.yaml","L-Carnitine"]]},{"id":"CHEBI:17879","l":"4-hydroxybenzoate","na":57,"nb":1,"a":[["EC%3A1.13.11.41","2,4'-dihydroxyacetophenone dioxygenase"],["EC%3A1.14.13.2","4-hydroxybenzoate 3-monooxygenase"],["EC%3A1.14.13.33","4-hydroxybenzoate 3-monooxygenase [NAD(P)H]"],["EC%3A1.14.13.64","4-hydroxybenzoate 1-hydroxylase"],["EC%3A1.14.14.92","benzoate 4-monooxygenase"],["EC%3A1.14.19.55","4-hydroxybenzoate brominase (decarboxylating)"]],"b":[["mapped/P-hydroxybenzoate.yaml","p-Hydroxybenzoate"]]},{"id":"CHEBI:15589","l":"(S)-malate(2-)","na":56,"nb":1,"a":[["EC%3A1.1.1.299","malate dehydrogenase [NAD(P)(+)]"],["EC%3A1.1.1.37","(S)-malate dehydrogenase (NAD(+), oxaloacetate-forming)"],["EC%3A1.1.1.38","malate dehydrogenase (oxaloacetate-decarboxylating)"],["EC%3A1.1.1.39","malate dehydrogenase (decarboxylating)"],["EC%3A1.1.1.40","malate dehydrogenase (oxaloacetate-decarboxylating) 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dismutase"]],"b":[["mapped/Nitrate.yaml","Nitrate"]]},{"id":"CHEBI:16374","l":"","na":39,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16374","requires vitamin K2"],["EC%3A1.1.5.4","malate dehydrogenase (quinone)"],["EC%3A1.12.5.1","hydrogen:quinone oxidoreductase"],["EC%3A1.17.5.3","formate dehydrogenase-N"],["EC%3A1.3.5.1","succinate dehydrogenase"],["EC%3A1.3.5.3","protoporphyrinogen IX dehydrogenase (quinone)"]],"b":[["mapped/Menaquinone.yaml","Menaquinone"]]},{"id":"CHEBI:29805","l":"","na":38,"nb":1,"a":[["EC%3A1.1.1.26","glyoxylate reductase"],["EC%3A1.1.1.79","glyoxylate reductase (NADP(+))"],["EC%3A1.1.3.15","(S)-2-hydroxy-acid oxidase"],["EC%3A1.1.99.14","glycolate dehydrogenase"],["EC%3A1.2.1.21","glycolaldehyde dehydrogenase"],["EC%3A3.1.3.18","phosphoglycolate phosphatase"]],"b":[["mapped/Glycolate.yaml","Glycolate"]]},{"id":"CHEBI:17158","l":"methylglyoxal","na":37,"nb":1,"a":[["EC%3A1.1.1.283","methylglyoxal reductase (NADPH)"],["EC%3A1.1.1.78","methylglyoxal 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deacetylase"],["EC%3A3.7.1.8","2,6-dioxo-6-phenylhexa-3-enoate hydrolase"]],"b":[["mapped/Salicylate.yaml","Salicylate"]]},{"id":"CHEBI:18262","l":"","na":35,"nb":1,"a":[["EC%3A1.14.14.130","laurate 7-monooxygenase"],["EC%3A3.1.2.21","dodecanoyl-[acyl-carrier-protein] hydrolase"],["RHEA%3A48540","1,2-didodecanoyl-3-beta-D-galactosyl-sn-glycerol + H2O = dodecanoyl-3-beta-D-galactosyl-sn-glycerol + dodecanoate + H(+)"],["RHEA%3A48516","1,2-didodecanoyl-3-O-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-sn-glycerol + H2O = dodecanoyl-3-O-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-sn-glycerol + dodecanoate + H(+)"],["RHEA%3A48536","1-beta-D-galactosyl-2,3-didodecanoyl-sn-glycerol + H2O = 1-beta-D-galactosyl-dodecanoyl-sn-glycerol + dodecanoate + H(+)"],["RHEA%3A44316","1-dodecanoylglycerol + H2O = dodecanoate + glycerol + H(+)"]],"b":[["mapped/Dodecanoate.yaml","Dodecanoate"]]},{"id":"CHEBI:17272","l":"propionate","na":34,"nb":1,"a":[["EC%3A1.3.1.125","acrylate 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D-ribonucleotide:phenol phospho-D-ribosyltransferase"],["EC%3A2.7.1.238","phenol phosphorylase"]],"b":[["mapped/Phenol.yaml","Phenol"]]},{"id":"CHEBI:16236","l":"ethanol","na":31,"nb":1,"a":[["EC%3A1.1.1.1","alcohol dehydrogenase"],["EC%3A1.1.5.5","alcohol dehydrogenase (quinone)"],["EC%3A1.1.99.36","alcohol dehydrogenase (nicotinoprotein)"],["EC%3A2.3.1.268","ethanol O-acetyltransferase"],["EC%3A3.1.1.113","ethyl acetate hydrolase"],["EC%3A3.1.1.67","fatty-acyl-ethyl-ester synthase"]],"b":[["mapped/Ethanol.yaml","Ethanol"]]},{"id":"CHEBI:17245","l":"carbon monoxide","na":31,"nb":1,"a":[["EC%3A1.13.11.24","quercetin 2,3-dioxygenase"],["EC%3A1.13.11.47","3-hydroxy-4-oxoquinoline 2,4-dioxygenase"],["EC%3A1.13.11.48","3-hydroxy-2-methylquinolin-4-one 2,4-dioxygenase"],["EC%3A1.13.11.53","acireductone dioxygenase (Ni(2+)-requiring)"],["EC%3A1.14.14.18","heme oxygenase (biliverdin-producing)"],["EC%3A1.14.15.20","heme oxygenase (biliverdin-producing, ferredoxin)"]],"b":[["mapped/Carbon_Monoxide.yaml","Carbon Monoxide"]]},{"id":"CHEBI:17347","l":"testosterone","na":30,"nb":1,"a":[["EC%3A1.1.1.239","3alpha-(17beta)-hydroxysteroid dehydrogenase (NAD(+))"],["EC%3A1.1.1.51","3(or 17)beta-hydroxysteroid dehydrogenase"],["EC%3A1.1.1.64","testosterone 17beta-dehydrogenase (NADP(+))"],["EC%3A1.14.14.14","aromatase"],["EC%3A1.14.14.197","progesterone 11alpha-monooxygenase"],["EC%3A1.14.15.19","C-19 steroid 1alpha-hydroxylase"]],"b":[["mapped/Testosterone.yaml","testosterone"]]},{"id":"CHEBI:30854","l":"","na":29,"nb":1,"a":[["EC%3A1.14.13.168","indole-3-pyruvate monooxygenase"],["EC%3A1.14.13.235","indole-3-acetate monooxygenase"],["EC%3A1.2.3.7","indole-3-acetaldehyde oxidase"],["EC%3A2.1.1.278","indole-3-acetate O-methyltransferase"],["EC%3A2.4.1.121","indole-3-acetate beta-glucosyltransferase"],["EC%3A3.5.1.134","(indol-3-yl)acetyl-L-aspartate 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lyase"],["EC%3A4.1.2.26","phenylserine aldolase"],["EC%3A4.1.2.38","benzoin aldolase"]],"b":[["mapped/Benzaldehyde.yaml","Benzaldehyde"]]},{"id":"CHEBI:30839","l":"","na":26,"nb":1,"a":[["EC%3A1.3.1.14","dihydroorotate dehydrogenase (NAD(+))"],["EC%3A1.3.1.15","dihydroorotate dehydrogenase (NADP(+))"],["EC%3A1.3.5.2","dihydroorotate dehydrogenase (quinone)"],["EC%3A1.3.98.1","dihydroorotate oxidase (fumarate)"],["EC%3A2.4.2.10","orotate phosphoribosyltransferase"],["RHEA%3A29347","orotate(in) + 2 H(+)(in) = orotate(out) + 2 H(+)(out)"]],"b":[["mapped/Orotate.yaml","Orotate"]]},{"id":"CHEBI:17594","l":"","na":25,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_17594","requires hydroquinone"],["EC%3A1.10.3.2","laccase"],["EC%3A1.13.11.66","hydroquinone 1,2-dioxygenase"],["EC%3A1.14.13.64","4-hydroxybenzoate 1-hydroxylase"],["EC%3A1.6.5.6","p-benzoquinone reductase (NADPH)"],["EC%3A1.8.5.7","glutathionyl-hydroquinone reductase"]],"b":[["mapped/Hydroquinone.yaml","Hydroquinone"]]},{"id":"CHEBI:18346","l":"vanillin","na":25,"nb":1,"a":[["EC%3A1.1.3.38","vanillyl-alcohol oxidase"],["EC%3A1.11.1.16","versatile peroxidase"],["EC%3A1.13.11.43","lignostilbene alphabeta-dioxygenase"],["EC%3A1.13.11.88","isoeugenol monooxygenase"],["EC%3A1.13.11.94","4-vinylguaiacol dioxygenase"],["EC%3A1.2.1.67","vanillin dehydrogenase"]],"b":[["mapped/Vanillin.yaml","Vanillin"]]},{"id":"CHEBI:16551","l":"","na":24,"nb":1,"a":[["EC%3A2.3.1.122","trehalose O-mycolyltransferase"],["EC%3A2.3.1.279","long-chain-acyl-CoA--trehalose acyltransferase"],["EC%3A2.4.1.231","alpha,alpha-trehalose phosphorylase (configuration-retaining)"],["EC%3A2.4.1.245","alpha,alpha-trehalose synthase"],["EC%3A2.4.1.64","alpha,alpha-trehalose phosphorylase"],["EC%3A2.7.1.201","protein-N(pi)-phosphohistidine--trehalose phosphotransferase"]],"b":[["mapped/Alphaalpha-Trehalose.yaml","alpha,alpha-Trehalose"]]},{"id":"CHEBI:17597","l":"","na":24,"nb":1,"a":[["EC%3A1.1.3.19","4-hydroxymandelate oxidase (decarboxylating)"],["EC%3A1.13.11.94","4-vinylguaiacol dioxygenase"],["EC%3A1.17.9.1","4-methylphenol dehydrogenase (hydroxylating)"],["EC%3A1.2.1.64","4-hydroxybenzaldehyde dehydrogenase (NAD(+))"],["EC%3A1.2.1.96","4-hydroxybenzaldehyde dehydrogenase (NADP(+))"],["EC%3A4.1.2.11","hydroxymandelonitrile lyase"]],"b":[["mapped/4-Hydroxybenzaldehyde.yaml","4-Hydroxybenzaldehyde"]]},{"id":"CHEBI:17234","l":"glucose","na":1,"nb":23,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"]],"b":[["mapped/Corn_Steep_Liquor_Glucose_Fumarate.yaml","Corn Steep Liquor + Glucose + Fumarate"],["mapped/Fastidious_Anaerobe_Broth_With_Meat_Granules.yaml","Fastidious Anaerobe Broth With Meat Granules"],["mapped/GYPS.yaml","GYPS"],["mapped/Glucose.yaml","Glucose"],["mapped/Glucose_2.yaml","glucose"],["mapped/Glucose_Acetate.yaml","Glucose + Acetate"]]},{"id":"CHEBI:36257","l":"","na":22,"nb":1,"a":[["RHEA%3A79091","an L-alpha-amino acid + taurocholate = an N-choloyl-L-alpha-amino acid + taurine"],["RHEA%3A47108","cholate + taurine = taurocholate + H2O"],["RHEA%3A47100","choloyl-CoA + taurine = taurocholate + CoA + H(+)"],["RHEA%3A67560","taurocholate + 3'-phosphoadenylyl sulfate = taurocholate 7-sulfate + adenosine 3',5'-bisphosphate + H(+)"],["RHEA%3A50052","taurocholate(in) + ATP + H2O = taurocholate(out) + ADP + phosphate + H(+)"],["RHEA%3A66404","taurocholate(in) + glutathione(in) + ATP + H2O = taurocholate(out) + glutathione(out) + ADP + phosphate + H(+)"]],"b":[["mapped/Taurocholate.yaml","Taurocholate"]]},{"id":"CHEBI:53455","l":"","na":22,"nb":1,"a":[["EC%3A1.1.1.175","D-xylose 1-dehydrogenase"],["EC%3A1.1.1.179","D-xylose 1-dehydrogenase (NADP(+), D-xylono-1,5-lactone-forming)"],["EC%3A1.1.1.307","D-xylose reductase [NAD(P)H]"],["EC%3A1.1.1.359","aldose 1-dehydrogenase [NAD(P)(+)]"],["EC%3A1.1.1.430","D-xylose reductase (NADH)"],["EC%3A1.1.1.431","D-xylose reductase (NADPH)"]],"b":[["mapped/Glucose_Xylose.yaml","Glucose + Xylose"]]},{"id":"CHEBI:17748","l":"thymidine","na":21,"nb":1,"a":[["EC%3A2.4.2.2","pyrimidine-nucleoside phosphorylase"],["EC%3A2.4.2.4","thymidine phosphorylase"],["EC%3A2.7.1.114","AMP--thymidine kinase"],["EC%3A2.7.1.118","ADP--thymidine kinase"],["EC%3A2.7.1.145","deoxynucleoside kinase"],["EC%3A2.7.1.21","thymidine kinase"]],"b":[["mapped/Thymidine.yaml","Thymidine"]]},{"id":"CHEBI:16016","l":"dihydroxyacetone","na":20,"nb":1,"a":[["EC%3A1.1.1.156","glycerol 2-dehydrogenase (NADP(+))"],["EC%3A1.1.1.6","glycerol dehydrogenase"],["EC%3A1.1.99.22","glycerol dehydrogenase (acceptor)"],["EC%3A2.2.1.3","formaldehyde transketolase"],["EC%3A2.7.1.121","phosphoenolpyruvate--glycerone phosphotransferase"],["EC%3A2.7.1.29","glycerone kinase"]],"b":[["mapped/Dihydroxyacetone.yaml","Dihydroxyacetone"]]},{"id":"CHEBI:17716","l":"lactose","na":20,"nb":1,"a":[["EC%3A2.4.1.22","lactose synthase"],["EC%3A2.7.1.207","protein-N(pi)-phosphohistidine--lactose phosphotransferase"],["EC%3A3.2.1.108","lactase"],["EC%3A3.2.1.140","lacto-N-biosidase"],["EC%3A3.2.1.227","N-acetyllactosaminidase"],["RHEA%3A86923","a beta-D-Gal-(1->4)-beta-D-Glc-(1<->1)-Cer(d18:1(4E)) + H2O = lactose + an N-acylsphing-4-enine"]],"b":[["mapped/Lactose.yaml","Lactose"]]},{"id":"CHEBI:17836","l":"4-aminobenzoate","na":20,"nb":1,"a":[["EC%3A1.14.13.27","4-aminobenzoate 1-monooxygenase"],["EC%3A1.14.99.68","4-aminobenzoate N-oxygenase"],["EC%3A2.4.2.54","beta-ribofuranosylphenol 5'-phosphate synthase"],["EC%3A2.5.1.15","dihydropteroate synthase"],["EC%3A4.1.1.24","aminobenzoate decarboxylase"],["EC%3A4.1.3.38","aminodeoxychorismate lyase"]],"b":[["mapped/4-aminobenzoate.yaml","4-Aminobenzoate"]]},{"id":"CHEBI:17924","l":"D-glucitol","na":20,"nb":1,"a":[["EC%3A1.1.1.14","L-iditol 2-dehydrogenase"],["EC%3A1.1.1.289","sorbose reductase"],["EC%3A1.1.3.40","D-mannitol oxidase"],["EC%3A1.1.99.21","D-sorbitol dehydrogenase (acceptor)"],["EC%3A1.1.99.28","glucose-fructose oxidoreductase"],["EC%3A2.7.1.198","protein-N(pi)-phosphohistidine--D-sorbitol phosphotransferase"]],"b":[["mapped/D-sorbitol.yaml","D-Sorbitol"]]},{"id":"CHEBI:16709","l":"pyridoxine","na":19,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16709","requires pyridoxine"],["EC%3A1.1.1.65","pyridoxine 4-dehydrogenase"],["EC%3A1.1.3.12","pyridoxine 4-oxidase"],["EC%3A1.1.99.9","pyridoxine 5-dehydrogenase"],["EC%3A2.4.1.160","pyridoxine 5'-O-beta-D-glucosyltransferase"],["EC%3A2.7.1.35","pyridoxal kinase"]],"b":[["mapped/Pyridoxine.yaml","Pyridoxine"]]},{"id":"CHEBI:17447","l":"","na":19,"nb":1,"a":[["EC%3A1.1.1.183","geraniol dehydrogenase (NADP(+))"],["EC%3A1.1.1.347","geraniol dehydrogenase (NAD(+))"],["EC%3A1.14.14.83","geraniol 8-hydroxylase"],["EC%3A2.7.1.216","farnesol kinase"],["EC%3A3.1.7.11","geranyl diphosphate diphosphatase"],["EC%3A5.4.4.4","geraniol isomerase"]],"b":[["mapped/Geraniol.yaml","Geraniol"]]},{"id":"CHEBI:17997","l":"dinitrogen","na":18,"nb":1,"a":[["EC%3A1.18.6.1","nitrogenase"],["EC%3A1.18.6.2","vanadium-dependent nitrogenase"],["EC%3A1.19.6.1","nitrogenase (flavodoxin)"],["EC%3A1.7.2.4","nitrous-oxide reductase"],["EC%3A1.7.2.8","hydrazine dehydrogenase"],["RHEA%3A79967","3-diazoavenalumate + NADH + H(+) = avenalumate + N2 + NAD(+)"]],"b":[["mapped/Nitrogen_gas.yaml","Nitrogen gas"]]},{"id":"CHEBI:16881","l":"","na":17,"nb":1,"a":[["EC%3A1.13.11.17","indole 2,3-dioxygenase"],["EC%3A1.14.14.153","indole-2-monooxygenase"],["EC%3A4.1.1.92","indole-3-carboxylate decarboxylase"],["EC%3A4.1.2.8","indole-3-glycerol-phosphate lyase"],["EC%3A4.1.99.1","tryptophanase"],["EC%3A4.2.1.122","tryptophan synthase (indole-salvaging)"]],"b":[["mapped/Indole.yaml","Indole"]]},{"id":"CHEBI:17120","l":"hexanoate","na":17,"nb":1,"a":[["EC%3A3.5.1.39","alkylamidase"],["RHEA%3A53496","1-hexanoyl-2-acyl-sn-glycero-3-phosphocholine + H2O = hexanoate + a 2-acyl-sn-glycero-3-phosphocholine + H(+)"],["RHEA%3A54464","1-octadecanoyl-2-hexanoyl-sn-glycero-3-phosphocholine + H2O = hexanoate + 1-octadecanoyl-sn-glycero-3-phosphocholine + H(+)"],["RHEA%3A47352","a hexanoate ester + H2O = an aliphatic alcohol + hexanoate + H(+)"],["RHEA%3A79351","hexanal + 2 Fe(III)-[cytochrome c] + H2O = hexanoate + 2 Fe(II)-[cytochrome c] + 3 H(+)"],["RHEA%3A67276","hexanal + NAD(+) + H2O = hexanoate + NADH + 2 H(+)"]],"b":[["mapped/Hexanoate.yaml","Hexanoate"]]},{"id":"CHEBI:10352","l":"","na":16,"nb":1,"a":[["EC%3A1.14.14.126","beta-amyrin 28-monooxygenase"],["EC%3A1.14.14.134","beta-amyrin 24-hydroxylase"],["EC%3A1.14.14.152","beta-amyrin 11-oxidase"],["EC%3A1.14.14.171","beta-amyrin 16alpha-hydroxylase"],["EC%3A1.14.14.63","beta-amyrin 16beta-monooxygenase"],["EC%3A1.14.14.64","beta-amyrin 6beta-monooxygenase"]],"b":[["mapped/Beta-Amyrin.yaml","Beta-Amyrin"]]},{"id":"CHEBI:15889","l":"","na":16,"nb":1,"a":[["EC%3A2.3.1.26","sterol O-acyltransferase"],["EC%3A2.3.1.43","phosphatidylcholine--sterol O-acyltransferase"],["EC%3A2.3.1.73","diacylglycerol--sterol O-acyltransferase"],["EC%3A2.4.1.173","sterol 3beta-glucosyltransferase"],["EC%3A3.1.1.13","sterol esterase"],["RHEA%3A21204","a sterol + a 1,2-diacyl-sn-glycero-3-phosphocholine = a sterol ester + a 1-acyl-sn-glycero-3-phosphocholine"]],"b":[["mapped/Sterol.yaml","Sterol"]]},{"id":"CHEBI:16247","l":"","na":16,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A9.A.79","The Autophagosomal Phospholipid Transmembrane Translocase (Atg9) Family"],["TCDB%3A9.A.36","The Ca2+-dependent Phospholipid Scramblase (Scramblase) Family"],["TCDB%3A1.A.17","The Calcium-dependent Chloride Channel (Ca-ClC) Family"],["TCDB%3A9.B.27","The Death Effector Domain A (DedA) Family"],["TCDB%3A8.A.97","The EPG-3/VMP1 (EPG/VPM) Scramblase Family"]],"b":[["mapped/Bacto_Soytone.yaml","Bacto Soytone"]]},{"id":"CHEBI:17151","l":"xylitol","na":16,"nb":1,"a":[["EC%3A1.1.1.10","L-xylulose reductase"],["EC%3A1.1.1.15","D-iditol 2-dehydrogenase"],["EC%3A1.1.1.307","D-xylose reductase [NAD(P)H]"],["EC%3A1.1.1.430","D-xylose reductase (NADH)"],["EC%3A1.1.1.431","D-xylose reductase (NADPH)"],["EC%3A1.1.1.9","D-xylulose reductase"]],"b":[["mapped/Xylitol.yaml","Xylitol"]]},{"id":"CHEBI:17240","l":"","na":15,"nb":1,"a":[["EC%3A2.8.3.22","succinyl-CoA--L-malate CoA-transferase"],["EC%3A4.1.1.113","trans-aconitate decarboxylase"],["EC%3A4.1.1.6","cis-aconitate decarboxylase"],["EC%3A6.2.1.4","succinate--CoA ligase (GDP-forming)"],["RHEA%3A15253","cis-aconitate + H(+) = itaconate + CO2"],["RHEA%3A86311","itaconate + ATP + CoA = itaconyl-CoA + ADP + phosphate"]],"b":[["mapped/Itaconate.yaml","Itaconate"]]},{"id":"CHEBI:17987","l":"","na":15,"nb":1,"a":[["EC%3A1.14.15.26","toluene methyl-monooxygenase"],["EC%3A2.3.1.196","benzyl alcohol O-benzoyltransferase"],["EC%3A2.3.1.224","acetyl-CoA-benzylalcohol acetyltransferase"],["EC%3A3.1.1.70","cetraxate benzylesterase"],["EC%3A3.5.1.58","N-benzyloxycarbonylglycine hydrolase"],["EC%3A3.5.1.64","N(alpha)-benzyloxycarbonylleucine hydrolase"]],"b":[["mapped/Benzyl_Alcohol.yaml","Benzyl Alcohol"]]},{"id":"CHEBI:15698","l":"","na":14,"nb":1,"a":[["EC%3A2.7.1.74","deoxycytidine kinase"],["EC%3A3.5.1.135","N(4)-acetylcytidine amidohydrolase"],["EC%3A3.5.4.5","cytidine deaminase"],["RHEA%3A20061","2'-deoxycytidine + a ribonucleoside 5'-triphosphate = dCMP + a ribonucleoside 5'-diphosphate + H(+)"],["RHEA%3A46040","2'-deoxycytidine + ATP = dCMP + ADP + H(+)"],["RHEA%3A13433","2'-deoxycytidine + H2O + H(+) = 2'-deoxyuridine + NH4(+)"]],"b":[["mapped/2-Deoxycytidine.yaml","2'-Deoxycytidine"]]},{"id":"CHEBI:15846","l":"NAD(+)","na":14,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_15846","requires NAD+"],["ARO%3A3002846","arr-1"],["ARO%3A3002847","arr-2"],["ARO%3A3002848","arr-3"],["ARO%3A3002849","arr-4"],["ARO%3A3002850","arr-5"]],"b":[["mapped/Beta-nad.yaml","beta-NAD"]]},{"id":"CHEBI:16450","l":"","na":14,"nb":1,"a":[["EC%3A1.14.11.10","pyrimidine-deoxynucleoside 1'-dioxygenase"],["EC%3A1.14.11.3","pyrimidine-deoxynucleoside 2'-dioxygenase"],["EC%3A2.4.2.2","pyrimidine-nucleoside phosphorylase"],["EC%3A3.5.4.5","cytidine deaminase"],["RHEA%3A13433","2'-deoxycytidine + H2O + H(+) = 2'-deoxyuridine + NH4(+)"],["RHEA%3A23316","2'-deoxyuridine + 2-oxoglutarate + O2 = 2-deoxy-D-ribono-1,4-lactone + uracil + succinate + CO2"]],"b":[["mapped/2-deoxyuridine.yaml","2'-Deoxyuridine"]]},{"id":"CHEBI:16619","l":"(2-trans,6-trans)-farnesol","na":14,"nb":1,"a":[["EC%3A1.1.1.216","farnesol dehydrogenase"],["EC%3A1.1.1.354","farnesol dehydrogenase (NAD(+))"],["EC%3A2.7.1.216","farnesol kinase"],["EC%3A3.1.7.6","farnesyl diphosphatase"],["EC%3A5.2.1.9","farnesol 2-isomerase"],["RHEA%3A13401","(2E,6E)-farnesol = (2Z,6E)-farnesol"]],"b":[["mapped/TransTrans-Farnesol.yaml","Trans,Trans-Farnesol"]]},{"id":"CHEBI:18401","l":"","na":14,"nb":1,"a":[["EC%3A1.14.14.54","phenylacetate 2-hydroxylase"],["EC%3A1.2.1.39","phenylacetaldehyde dehydrogenase"],["EC%3A4.1.1.119","phenylacetate decarboxylase"],["EC%3A6.2.1.30","phenylacetate--CoA ligase"],["RHEA%3A21392","2-phenylacetaldehyde + NAD(+) + H2O = 2-phenylacetate + NADH + 2 H(+)"],["RHEA%3A64820","2-phenylacetamide + H2O = 2-phenylacetate + NH4(+)"]],"b":[["mapped/Phenylacetate.yaml","Phenylacetate"]]},{"id":"CHEBI:28262","l":"dimethyl sulfoxide","na":14,"nb":1,"a":[["EC%3A1.14.13.245","assimilatory dimethylsulfide S-monooxygenase"],["EC%3A1.8.1.17","dimethylsulfone reductase"],["EC%3A1.8.2.4","dimethyl sulfide:cytochrome c2 reductase"],["EC%3A1.8.5.3","respiratory dimethylsulfoxide reductase"],["RHEA%3A30587","2-demethylmenaquinol-8 + dimethyl sulfoxide = 2-demethylmenaquinone-8 + dimethyl sulfide + H2O"],["RHEA%3A30227","2 Fe(III)-[cytochrome c2] + dimethyl sulfide + H2O = 2 Fe(II)-[cytochrome c2] + dimethyl sulfoxide + 2 H(+)"]],"b":[["mapped/Dimethyl_Sulfoxide.yaml","Dimethyl sulfoxide"]]},{"id":"CHEBI:10983","l":"(R)-3-hydroxybutyrate","na":13,"nb":1,"a":[["EC%3A1.1.1.30","3-hydroxybutyrate dehydrogenase"],["EC%3A3.1.1.22","hydroxybutyrate-dimer hydrolase"],["EC%3A3.1.1.75","poly(3-hydroxybutyrate) depolymerase"],["RHEA%3A65204","(3R)-3-hydroxybutanoyl-CoA + H2O = (R)-3-hydroxybutanoate + CoA + H(+)"],["RHEA%3A10172","(3R)-hydroxybutanoate dimer + H2O = 2 (R)-3-hydroxybutanoate + H(+)"],["RHEA%3A11248","[(3R)-hydroxybutanoate](n) + H2O = [(3R)-hydroxybutanoate](n-1) + (R)-3-hydroxybutanoate + H(+)"]],"b":[["mapped/R-3-hydroxybutyrate.yaml","(R)-3-hydroxybutyrate"]]},{"id":"CHEBI:15588","l":"","na":13,"nb":1,"a":[["EC%3A1.1.1.83","D-malate dehydrogenase (decarboxylating)"],["EC%3A1.1.99.40","(R)-2-hydroxyglutarate--pyruvate transhydrogenase"],["EC%3A2.8.3.20","succinyl-CoA--D-citramalate CoA-transferase"],["EC%3A4.2.1.31","maleate hydratase"],["RHEA%3A81419","(3R)-3-hydroxy-4-oxobutanoate + NAD(+) + H2O = (R)-malate + NADH + 2 H(+)"],["RHEA%3A81423","(3R)-3-hydroxy-4-oxobutanoate + NADP(+) + H2O = (R)-malate + NADPH + 2 H(+)"]],"b":[["mapped/D-malate.yaml","D-malate"]]},{"id":"CHEBI:15724","l":"","na":13,"nb":1,"a":[["EC%3A1.14.13.148","trimethylamine monooxygenase"],["EC%3A1.7.2.3","trimethylamine-N-oxide reductase"],["EC%3A4.1.2.32","trimethylamine-oxide aldolase"],["RHEA%3A30583","2-demethylmenaquinol-8 + trimethylamine N-oxide + H(+) = 2-demethylmenaquinone-8 + trimethylamine + H2O"],["RHEA%3A24236","trimethylamine + 2 Fe(III)-[cytochrome c] + H2O = trimethylamine N-oxide + 2 Fe(II)-[cytochrome c] + 3 H(+)"],["RHEA%3A29271","trimethylamine N-oxide + a menaquinol + H(+) = trimethylamine + a menaquinone + H2O"]],"b":[["mapped/Trimethylamine-N-oxide.yaml","Trimethylamine-N-oxide"]]},{"id":"CHEBI:16183","l":"methane","na":13,"nb":1,"a":[["EC%3A1.14.13.25","methane monooxygenase (soluble)"],["EC%3A1.14.18.3","methane monooxygenase (particulate)"],["EC%3A2.8.4.1","coenzyme-B sulfoethylthiotransferase"],["EC%3A4.7.1.1","alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase"],["RHEA%3A34707","alpha-D-ribose 1-methylphosphonate 5-phosphate + AH2 + S-adenosyl-L-methionine = alpha-D-ribose 1,2-cyclic phosphate 5-phosphate + methane + 5'-deoxyadenosine + L-methionine + A + H(+)"],["RHEA%3A12532","coenzyme B + methyl-coenzyme M = methane + coenzyme M-coenzyme B heterodisulfide"]],"b":[["mapped/Methane.yaml","methane"]]},{"id":"CHEBI:17045","l":"dinitrogen oxide","na":13,"nb":1,"a":[["EC%3A1.7.1.14","nitric oxide reductase [NAD(P)(+), nitrous oxide-forming]"],["EC%3A1.7.2.4","nitrous-oxide reductase"],["EC%3A1.7.2.5","nitric-oxide reductase (cytochrome c)"],["EC%3A1.7.5.2","nitric oxide reductase (menaquinol)"],["RHEA%3A30215","a menaquinol + 2 nitric oxide = nitrous oxide + a menaquinone + H2O"],["RHEA%3A43108","N2 + 2 Fe(III)-[cytochrome c] + H2O = nitrous oxide + 2 Fe(II)-[cytochrome c] + 2 H(+)"]],"b":[["mapped/Nitrous_Oxide.yaml","nitrous oxide"]]},{"id":"CHEBI:17578","l":"toluene","na":13,"nb":1,"a":[["EC%3A1.14.12.11","toluene dioxygenase"],["EC%3A1.14.13.236","toluene 4-monooxygenase"],["EC%3A1.14.13.243","toluene 2-monooxygenase"],["EC%3A1.14.15.26","toluene methyl-monooxygenase"],["EC%3A4.1.1.119","phenylacetate decarboxylase"],["EC%3A4.1.99.11","benzylsuccinate synthase"]],"b":[["mapped/Toluene.yaml","Toluene"]]},{"id":"CHEBI:17612","l":"","na":13,"nb":1,"a":[["EC%3A1.13.11.15","3,4-dihydroxyphenylacetate 2,3-dioxygenase"],["EC%3A1.14.12.9","4-chlorophenylacetate 3,4-dioxygenase"],["EC%3A1.14.14.9","4-hydroxyphenylacetate 3-monooxygenase"],["EC%3A4.1.1.83","4-hydroxyphenylacetate decarboxylase"],["RHEA%3A69080","3,4-dihydroxyphenylacetaldehyde + NAD(+) + H2O = 3,4-dihydroxyphenylacetate + NADH + 2 H(+)"],["RHEA%3A62556","3,4-dihydroxyphenylacetate + H(+) = 4-methylcatechol + CO2"]],"b":[["mapped/34-Dihydroxyphenylacetate.yaml","3,4-Dihydroxyphenylacetate"]]},{"id":"CHEBI:18404","l":"","na":13,"nb":1,"a":[["EC%3A1.14.12.23","nitroarene dioxygenase"],["EC%3A1.14.13.243","toluene 2-monooxygenase"],["EC%3A1.3.1.19","cis-1,2-dihydrobenzene-1,2-diol dehydrogenase"],["EC%3A1.3.1.68","1,2-dihydroxy-6-methylcyclohexa-3,5-dienecarboxylate dehydrogenase"],["RHEA%3A15657","1,6-dihydroxy-2-methylcyclohexa-2,4-dienecarboxylate + NAD(+) = 3-methylcatechol + CO2 + NADH"],["RHEA%3A25193","(1S,2R)-3-methylcyclohexa-3,5-diene-1,2-diol + NAD(+) = 3-methylcatechol + NADH + H(+)"]],"b":[["mapped/3-Methylcatechol.yaml","3-Methylcatechol"]]},{"id":"CHEBI:27689","l":"","na":13,"nb":1,"a":[["RHEA%3A48596","1,2-didecanoylglycerol + H2O = decanoylglycerol + decanoate + H(+)"],["RHEA%3A44320","1-decanoylglycerol + H2O = decanoate + glycerol + H(+)"],["RHEA%3A44104","decanal + NAD(+) + H2O = decanoate + NADH + 2 H(+)"],["RHEA%3A33627","decanoate + ATP + CoA = decanoyl-CoA + AMP + diphosphate"],["RHEA%3A65008","decanoate + ATP + H(+) = decanoyl-AMP + diphosphate"],["RHEA%3A47360","decanoate ester + H2O = decanoate + an aliphatic alcohol + H(+)"]],"b":[["mapped/Decanoate.yaml","Decanoate"]]},{"id":"CHEBI:28037","l":"","na":13,"nb":1,"a":[["EC%3A1.1.3.29","N-acylhexosamine oxidase"],["EC%3A3.2.1.217","exo-acting protein-alpha-N-acetylgalactosaminidase"],["EC%3A3.2.1.49","alpha-N-acetylgalactosaminidase"],["RHEA%3A70555","a 3-O-[N-acetyl-alpha-D-galactosaminyl]-L-seryl-[protein] + H2O = N-acetyl-D-galactosamine + L-seryl-[protein]"],["RHEA%3A70559","a 3-O-[N-acetyl-alpha-D-galactosaminyl]-L-threonyl-[protein] + H2O = N-acetyl-D-galactosamine + L-threonyl-[protein]"],["RHEA%3A82815","a beta-D-GalNAc-(1->3)-alpha-D-Gal-(1->3)-[alpha-L-Fuc-(1->2)]-beta-D-Gal-(1->4)-beta-D-GlcNAc derivative + H2O = an alpha-D-Gal-(1->3)-[alpha-L-Fuc-(1->2)]-beta-D-Gal-(1->4)-beta-D-GlcNAc derivative + N-acetyl-D-galactosamine"]],"b":[["mapped/N-Acetyl-D-galactosamine.yaml","N-Acetyl-D-galactosamine"]]},{"id":"CHEBI:28946","l":"","na":13,"nb":1,"a":[["EC%3A1.14.13.178","methylxanthine N(1)-demethylase"],["EC%3A1.14.13.179","methylxanthine N(3)-demethylase"],["EC%3A1.17.5.2","caffeine dehydrogenase"],["EC%3A2.1.1.159","theobromine synthase"],["EC%3A2.1.1.160","caffeine synthase"],["RHEA%3A24604","7-methylxanthine + S-adenosyl-L-methionine = theobromine + S-adenosyl-L-homocysteine + H(+)"]],"b":[["mapped/Theobromine.yaml","Theobromine"]]},{"id":"CHEBI:16193","l":"3-hydroxybenzoate","na":12,"nb":1,"a":[["EC%3A1.14.13.23","3-hydroxybenzoate 4-monooxygenase"],["EC%3A1.14.13.24","3-hydroxybenzoate 6-monooxygenase"],["EC%3A1.14.99.23","3-hydroxybenzoate 2-monooxygenase"],["EC%3A4.1.3.45","3-hydroxybenzoate synthase"],["EC%3A6.2.1.37","3-hydroxybenzoate--CoA ligase"],["RHEA%3A14193","3-hydroxybenzoate + AH2 + O2 = 2,3-dihydroxybenzoate + A + H2O"]],"b":[["mapped/3-hydroxybenzoate.yaml","3-hydroxybenzoate"]]},{"id":"CHEBI:26271","l":"proline","na":12,"nb":1,"a":[["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.15","The Betaine/Carnitine/Choline Transporter (BCCT) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"]],"b":[["mapped/Proline.yaml","Proline"]]},{"id":"CHEBI:28077","l":"rifampicin","na":12,"nb":1,"a":[["ARO%3A3007073","Bacillus subtilis rpoB mutants conferring resistance to rifampin"],["ARO%3A3004480","Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin"],["ARO%3A3004563","Clostridioides difficile rpoB with mutation conferring resistance to rifampicin"],["ARO%3A3003288","Escherichia coli rpoB mutants conferring resistance to rifampicin"],["ARO%3A3007051","Helicobacter pylori rpoB mutation conferring resistance to rifampicin"],["ARO%3A3003284","Mycobacterium leprae rpoB mutations conferring resistance to rifampicin"]],"b":[["mapped/Rifampicin.yaml","Rifampicin"]]},{"id":"CHEBI:28115","l":"methylcobalamin","na":12,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_28115","requires methylcobalamin"],["EC%3A1.16.1.8","[methionine synthase] reductase"],["EC%3A2.5.1.151","alkylcobalamin dealkylase"],["RHEA%3A23908","2 methylcob(III)alamin-[methionine synthase] + 2 S-adenosyl-L-homocysteine + NADP(+) + H(+) = 2 cob(II)alamin-[methionine synthase] + 2 S-adenosyl-L-methionine + NADPH"],["RHEA%3A81907","(2R,3R,5R)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + methylcob(III)alamin + S-adenosyl-L-methionine = (2R,3R,5S,6R)-6-(methyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A81911","(2R,3R,5S,6R)-6-(methyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + methylcob(III)alamin + S-adenosyl-L-methionine = (2R,3R,5S,6R)-6-(ethyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + cob(III)alamin + 5'-deoxyadenosine + L-methionine"]],"b":[["mapped/Methylcobalamin.yaml","methylcobalamin"]]},{"id":"CHEBI:30612","l":"","na":12,"nb":1,"a":[["EC%3A2.3.1.131","glucarate O-hydroxycinnamoyltransferase"],["EC%3A2.3.1.98","chlorogenate--glucarate O-hydroxycinnamoyltransferase"],["EC%3A4.2.1.40","glucarate dehydratase"],["RHEA%3A23204","chlorogenate + D-glucarate = 2-O-caffeoylglucarate + L-quinate"],["RHEA%3A14573","D-glucarate = 5-dehydro-4-deoxy-D-glucarate + H2O"],["RHEA%3A23308","D-glucarate + (E)-sinapoyl-CoA = 2-O-[(E)-sinapoyl]-D-glucarate + CoA"]],"b":[["mapped/D-glucarate.yaml","D-glucarate"]]},{"id":"CHEBI:31011","l":"","na":12,"nb":1,"a":[["EC%3A3.5.1.50","pentanamidase"],["RHEA%3A41199","1-hexadecanoyl-2-pentanoyl-sn-glycero-3-phosphocholine + H2O = pentanoate + 1-hexadecanoyl-sn-glycero-3-phosphocholine + H(+)"],["RHEA%3A54460","1-octadecanoyl-2-pentanoyl-sn-glycero-3-phosphocholine + H2O = pentanoate + 1-octadecanoyl-sn-glycero-3-phosphocholine + H(+)"],["RHEA%3A69092","pentanal + NAD(+) + H2O = pentanoate + NADH + 2 H(+)"],["RHEA%3A76663","pentanal + NADP(+) + H2O = pentanoate + NADPH + 2 H(+)"],["RHEA%3A10000","pentanamide + H2O = pentanoate + NH4(+)"]],"b":[["mapped/Valerate.yaml","Valerate"]]},{"id":"CHEBI:16134","l":"ammonia","na":11,"nb":1,"a":[["TCDB%3A1.A.11","The Ammonium Transporter Channel (Amt) Family"],["MCSA%3A376","adenosine deaminase"],["MCSA%3A75","aspartate-ammonia ligase"],["MCSA%3A449","cystathionine beta-lyase"],["MCSA%3A97","cytidine deaminase"],["MCSA%3A710","cytosine deaminase (bacterial)"]],"b":[["mapped/Ammonia.yaml","Ammonia"]]},{"id":"CHEBI:16510","l":"","na":11,"nb":1,"a":[["EC%3A1.1.1.298","3-hydroxypropionate dehydrogenase (NADP(+))"],["EC%3A1.1.1.59","3-hydroxypropionate dehydrogenase"],["EC%3A6.2.1.36","3-hydroxypropionyl-CoA synthase"],["RHEA%3A59432","3-hydroxypropanal + NAD(+) + H2O = 3-hydroxypropanoate + NADH + 2 H(+)"],["RHEA%3A59428","3-hydroxypropanal + NADP(+) + H2O = 3-hydroxypropanoate + NADPH + 2 H(+)"],["RHEA%3A67136","3-hydroxypropanoate + ATP + CoA = 3-hydroxypropanoyl-CoA + ADP + phosphate"]],"b":[["mapped/3-Hydroxypropionate.yaml","3-Hydroxypropionate"]]},{"id":"CHEBI:16537","l":"","na":11,"nb":1,"a":[["EC%3A2.3.1.130","galactarate O-hydroxycinnamoyltransferase"],["EC%3A4.2.1.158","galactarate dehydratase (D-threo-forming)"],["EC%3A4.2.1.42","galactarate dehydratase"],["RHEA%3A45808","galactarate = (2S,3R)-dihydroxy-5-oxohexanedioate + H2O"],["RHEA%3A16005","galactarate = 5-dehydro-4-deoxy-D-glucarate + H2O"],["RHEA%3A12997","galactarate + (E)-feruloyl-CoA = 2-O-[(E)-feruloyl]-D-galactarate + CoA"]],"b":[["mapped/Galactarate.yaml","Galactarate"]]},{"id":"CHEBI:16724","l":"4-hydroxybutyrate","na":11,"nb":1,"a":[["EC%3A1.1.1.61","4-hydroxybutyrate dehydrogenase"],["EC%3A1.1.1.n11","succinic semialdehyde reductase"],["EC%3A1.1.99.24","hydroxyacid-oxoacid transhydrogenase"],["EC%3A6.2.1.40","4-hydroxybutyrate--CoA ligase (AMP-forming)"],["EC%3A6.2.1.56","4-hydroxybutyrate--CoA ligase (ADP-forming)"],["RHEA%3A24734","4-hydroxybutanoate + 2-oxoglutarate = (R)-2-hydroxyglutarate + succinate semialdehyde"]],"b":[["mapped/4-hydroxybutyrate.yaml","4-hydroxybutyrate"]]},{"id":"CHEBI:16918","l":"gallate","na":11,"nb":1,"a":[["EC%3A1.13.11.57","gallate dioxygenase"],["EC%3A2.1.1.341","vanillate/3-O-methylgallate O-demethylase"],["EC%3A2.4.1.136","gallate 1-beta-glucosyltransferase"],["EC%3A3.1.1.20","tannase"],["EC%3A4.1.1.59","gallate decarboxylase"],["RHEA%3A12749","3,4,5-trihydroxybenzoate + H(+) = 1,2,3-trihydroxybenzene + CO2"]],"b":[["mapped/Gallate_Formate.yaml","Gallate + Formate"]]},{"id":"CHEBI:17847","l":"p-cresol","na":11,"nb":1,"a":[["EC%3A1.14.13.236","toluene 4-monooxygenase"],["EC%3A1.17.9.1","4-methylphenol dehydrogenase (hydroxylating)"],["EC%3A4.1.1.83","4-hydroxyphenylacetate decarboxylase"],["EC%3A4.1.99.19","2-iminoacetate synthase"],["RHEA%3A22732","4-hydroxyphenylacetate + H(+) = 4-methylphenol + CO2"],["RHEA%3A56976","4-methylphenol + 2 oxidized [azurin] + H2O = 4-hydroxybenzyl alcohol + 2 reduced [azurin] + 2 H(+)"]],"b":[["mapped/4-Cresol.yaml","4-Cresol"]]},{"id":"CHEBI:18067","l":"phylloquinone","na":11,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_18067","requires phylloquinone"],["EC%3A1.14.14.78","phylloquinone omega-hydroxylase"],["EC%3A1.14.99.20","phylloquinone monooxygenase (2,3-epoxidizing)"],["EC%3A1.17.4.4","vitamin-K-epoxide reductase (warfarin-sensitive)"],["RHEA%3A57744","phylloquinol + [protein]-disulfide = phylloquinone + [protein]-dithiol"],["RHEA%3A16745","phylloquinone + AH2 + O2 = 2,3-epoxyphylloquinone + A + H2O"]],"b":[["mapped/Vitamin_K1.yaml","Vitamin K1"]]},{"id":"CHEBI:18212","l":"selenite(2-)","na":11,"nb":1,"a":[["EC%3A1.97.1.14","selenate reductase (quinol)"],["EC%3A1.97.1.9","selenate reductase (cytochrome c)"],["RHEA%3A80603","selenite + 2 Fe(III)-[cytochrome c] + H2O = 2 Fe(II)-[cytochrome] + selenate + 2 H(+)"],["RHEA%3A34903","selenite + 4 glutathione + 2 H(+) = selenodiglutathione + glutathione disulfide + 3 H2O"],["RHEA%3A14029","selenite + A + H2O = selenate + AH2"],["RHEA%3A51636","selenite + a quinone + H2O = selenate + a quinol"]],"b":[["mapped/Selenite.yaml","Selenite"]]},{"id":"CHEBI:25094","l":"","na":11,"nb":1,"a":[["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A2.A.75","The L-Lysine Exporter (LysE) Family"],["TCDB%3A2.A.124","The Lysine Exporter (LysO) Family"]],"b":[["mapped/Lysine.yaml","Lysine"]]},{"id":"CHEBI:26710","l":"sodium chloride","na":1,"nb":11,"a":[["TCDB%3A2.A.30","The Cation-Chloride Cotransporter (CCC) Family"]],"b":[["mapped/ATCC_Wolfes_Mineral_Mix.yaml","ATCC Wolfe's mineral mix"],["mapped/Brain_Heart_Infusion_Broth.yaml","Brain heart infusion broth"],["mapped/Marine_Broth_2216.yaml","Marine broth 2216"],["mapped/Marine_agar_2216.yaml","Marine agar 2216"],["mapped/Mineral_3B_Solution.yaml","Mineral 3B solution"],["mapped/Mineral_3B_Solution_Minus_Nitrogen.yaml","Mineral 3B solution minus Nitrogen"]]},{"id":"CHEBI:27732","l":"","na":11,"nb":1,"a":[["EC%3A1.14.13.178","methylxanthine N(1)-demethylase"],["EC%3A1.17.5.2","caffeine dehydrogenase"],["EC%3A2.1.1.160","caffeine synthase"],["RHEA%3A10280","1,7-dimethylxanthine + S-adenosyl-L-methionine = caffeine + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A47148","caffeine + a ubiquinone + H2O = 1,3,7-trimethylurate + a ubiquinol"],["RHEA%3A36267","caffeine + NADH + O2 + H(+) = theobromine + formaldehyde + NAD(+) + H2O"]],"b":[["mapped/Caffeine.yaml","Caffeine"]]},{"id":"CHEBI:28591","l":"guaiacol","na":11,"nb":1,"a":[["EC%3A1.11.1.14","lignin peroxidase"],["EC%3A1.11.1.16","versatile peroxidase"],["RHEA%3A48004","1-(3,4-dimethoxyphenyl)-2-(2-methoxyphenoxy)propane-1,3-diol + H2O2 = 3,4-dimethoxybenzaldehyde + guaiacol + glycolaldehyde + H2O"],["RHEA%3A22396","1-(4-hydroxy-3-methoxyphenyl)-2-(2-methoxyphenoxy)propane-1,3-diol + H2O2 = guaiacol + vanillin + glycolaldehyde + H2O"],["RHEA%3A72243","catechol + S-adenosyl-L-methionine = guaiacol + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A72339","guaiacol + Co(I)-[methoxylated-aromatic-compound-specific corrinoid protein] + H(+) = methyl-Co(III)-[methoxylated-aromatic-compound-specific corrinoid protein] + catechol"]],"b":[["mapped/Guaiacol.yaml","Guaiacol"]]},{"id":"CHEBI:28685","l":"molybdenum atom","na":11,"nb":1,"a":[["proteintraitsmech%3ABIOLIP_MO","MO-binding site"],["proteintraitsmech%3AMETALPDB_MO_DINUCLEAR","dinuclear molybdenum site"],["proteintraitsmech%3AMETALPDB_MO_HEPTANUCLEAR","heptanuclear molybdenum site"],["proteintraitsmech%3AMETALPDB_MO_HEXANUCLEAR","hexanuclear molybdenum site"],["proteintraitsmech%3AMETALPDB_MO_MONONUCLEAR","mononuclear molybdenum site"],["proteintraitsmech%3AMETALPDB_MO_MULTINUCLEAR","multinuclear molybdenum site"]],"b":[["mapped/Molybdenum.yaml","Molybdenum"]]},{"id":"CHEBI:15075","l":"selenate","na":10,"nb":1,"a":[["EC%3A1.97.1.14","selenate reductase (quinol)"],["EC%3A1.97.1.9","selenate reductase (cytochrome c)"],["RHEA%3A34887","selenate(in) = selenate(out)"],["RHEA%3A72079","selenate(out) + 3 Na(+)(out) = selenate(in) + 3 Na(+)(in)"],["RHEA%3A34883","selenate(out) + ATP + H2O = selenate(in) + ADP + phosphate + H(+)"],["RHEA%3A80603","selenite + 2 Fe(III)-[cytochrome c] + H2O = 2 Fe(II)-[cytochrome] + selenate + 2 H(+)"]],"b":[["mapped/Selenate.yaml","Selenate"]]},{"id":"CHEBI:15688","l":"acetoin","na":10,"nb":1,"a":[["EC%3A2.2.1.4","acetoin--ribose-5-phosphate transaldolase"],["EC%3A2.3.1.190","acetoin dehydrogenase system"],["RHEA%3A54364","2 acetaldehyde = acetoin"],["RHEA%3A76879","3-aminobutan-2-ol + NAD(+) + H2O = acetoin + NH4(+) + NADH + H(+)"],["RHEA%3A76931","3-aminobutan-2-ol + NADP(+) + H2O = acetoin + NH4(+) + NADPH + H(+)"],["RHEA%3A54368","acetaldehyde + pyruvate + H(+) = acetoin + CO2"]],"b":[["mapped/Acetoin.yaml","Acetoin"]]},{"id":"CHEBI:16383","l":"","na":10,"nb":1,"a":[["EC%3A4.1.1.6","cis-aconitate decarboxylase"],["EC%3A5.3.3.7","aconitate Delta-isomerase"],["RHEA%3A15253","cis-aconitate + H(+) = itaconate + CO2"],["RHEA%3A22144","cis-aconitate + H2O = D-threo-isocitrate"],["RHEA%3A72475","cis-aconitate(in) + citrate(out) = cis-aconitate(out) + citrate(in)"],["RHEA%3A10228","citrate = cis-aconitate + H2O"]],"b":[["mapped/Cis-aconitate.yaml","Cis-aconitate"]]},{"id":"CHEBI:16547","l":"coniferyl aldehyde","na":10,"nb":1,"a":[["EC%3A1.1.1.194","coniferyl-alcohol dehydrogenase"],["EC%3A1.1.1.195","cinnamyl-alcohol dehydrogenase"],["EC%3A1.2.1.44","cinnamoyl-CoA reductase"],["EC%3A1.2.1.68","coniferyl-aldehyde dehydrogenase"],["RHEA%3A23968","(E)-coniferaldehyde + NAD(+) + H2O = (E)-ferulate + NADH + 2 H(+)"],["RHEA%3A64648","(E)-coniferaldehyde + NADP(+) + CoA = (E)-feruloyl-CoA + NADPH + H(+)"]],"b":[["mapped/Coniferyl_Aldehyde.yaml","coniferyl aldehyde"]]},{"id":"CHEBI:17698","l":"chloramphenicol","na":10,"nb":1,"a":[["EC%3A1.14.99.67","alpha-N-dichloroacetyl-p-aminophenylserinol N-oxygenase"],["EC%3A2.3.1.28","chloramphenicol O-acetyltransferase"],["RHEA%3A58884","alpha-N-dichloroacetyl-p-aminophenylserinol + AH2 + 2 O2 = chloramphenicol + A + 2 H2O"],["RHEA%3A18421","chloramphenicol + acetyl-CoA = chloramphenicol 3-acetate + CoA"],["RHEA%3A35287","chloramphenicol(in) + ATP + H2O = chloramphenicol(out) + ADP + phosphate + H(+)"],["RHEA%3A35059","chloramphenicol(in) + H(+)(out) = chloramphenicol(out) + H(+)(in)"]],"b":[["mapped/Chloramphenicol.yaml","Chloramphenicol"]]},{"id":"CHEBI:17745","l":"","na":10,"nb":1,"a":[["EC%3A1.1.1.194","coniferyl-alcohol dehydrogenase"],["EC%3A1.1.1.195","cinnamyl-alcohol dehydrogenase"],["EC%3A2.4.1.111","coniferyl-alcohol glucosyltransferase"],["EC%3A3.2.1.126","coniferin beta-glucosidase"],["RHEA%3A12252","4-O-(beta-D-glucosyl)-(E)-coniferol + H2O = (E)-coniferol + D-glucose"],["RHEA%3A76455","(E)-coniferol + A = (E)-coniferaldehyde + AH2"]],"b":[["mapped/Coniferyl_Alcohol.yaml","coniferyl alcohol"]]},{"id":"CHEBI:28189","l":"","na":10,"nb":1,"a":[["EC%3A3.2.1.10","oligo-1,6-glucosidase"],["EC%3A3.2.1.204","1,3-alpha-isomaltosidase"],["EC%3A3.2.1.205","isomaltose glucohydrolase"],["RHEA%3A52748","alpha-isomaltosyl-(1->3)-isomaltose + H2O = 2 isomaltose"],["RHEA%3A24844","cyclobis-(1->3)-alpha-D-isomaltosyl + 2 H2O = 2 isomaltose"],["RHEA%3A68864","isomaltose + H2O = alpha-D-glucose + D-glucose"]],"b":[["mapped/Isomaltose.yaml","Isomaltose"]]},{"id":"CHEBI:28694","l":"''copper atom''","na":10,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_28694","requires Cu"],["proteintraitsmech%3AMETALPDB_CU_DINUCLEAR","dinuclear copper site"],["proteintraitsmech%3AMETALPDB_CU_HEPTANUCLEAR","heptanuclear copper site"],["proteintraitsmech%3AMETALPDB_CU_HEXANUCLEAR","hexanuclear copper site"],["proteintraitsmech%3AMETALPDB_CU_MONONUCLEAR","mononuclear copper site"],["proteintraitsmech%3AMETALPDB_CU_MULTINUCLEAR","multinuclear copper site"]],"b":[["mapped/Copper.yaml","Copper"]]},{"id":"CHEBI:28940","l":"","na":10,"nb":1,"a":[["EC%3A1.14.14.24","vitamin D 25-hydroxylase"],["EC%3A1.14.15.22","vitamin D 1,25-hydroxylase"],["EC%3A1.17.99.10","steroid C-25 hydroxylase"],["RHEA%3A36411","7-dehydrocholesterol + hnu = calciol"],["RHEA%3A50696","calciol + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = calcidiol + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O"],["RHEA%3A46588","calciol + 2 reduced [adrenodoxin] + O2 + 2 H(+) = calcidiol + 2 oxidized [adrenodoxin] + H2O"]],"b":[["mapped/Vitamin_D3.yaml","Vitamin D3"]]},{"id":"CHEBI:4885","l":"ethionamide","na":10,"nb":1,"a":[["RHEA%3A47616","ethionamide + NADPH + O2 + H(+) = ethionamide S-oxide + NADP(+) + H2O"],["ARO%3A3003456","antibiotic resistant ethA"],["ARO%3A3003457","ethionamide resistant ethA"],["ARO%3A3005103","isoniazid resistant ethA"],["ARO%3A3005105","Mycobacterium tuberculosis ethA mutations conferring resistance to isoniazid"],["ARO%3A3005178","Mycobacterium tuberculosis ethA mutations conferring resistance to perchlozone"]],"b":[["mapped/Ethionamide.yaml","Ethionamide"]]},{"id":"CHEBI:51057","l":"3-phenylpropionate","na":10,"nb":1,"a":[["EC%3A1.14.12.19","3-phenylpropanoate dioxygenase"],["EC%3A1.3.8.15","3-(aryl)acrylate reductase"],["EC%3A3.5.5.1","nitrilase"],["RHEA%3A68904","3-phenylpropanoate + ATP + NADPH + H(+) = 3-phenylpropanal + AMP + diphosphate + NADP(+)"],["RHEA%3A29747","3-phenylpropanoate(in) = 3-phenylpropanoate(out)"],["RHEA%3A50944","3-phenylpropanoate + NAD(+) = (E)-cinnamate + NADH + H(+)"]],"b":[["mapped/3-phenylpropionate.yaml","3-phenylpropionate"]]},{"id":"CHEBI:16813","l":"","na":9,"nb":1,"a":[["EC%3A1.1.1.16","galactitol 2-dehydrogenase"],["EC%3A1.1.1.406","galactitol 2-dehydrogenase (L-tagatose-forming)"],["EC%3A2.7.1.200","protein-N(pi)-phosphohistidine--galactitol phosphotransferase"],["RHEA%3A33143","galactitol(in) = galactitol(out)"],["RHEA%3A37963","galactitol + NAD(+) = D-galactose + NADH + H(+)"],["RHEA%3A20685","galactitol + NAD(+) = keto-D-tagatose + NADH + H(+)"]],"b":[["mapped/Galactitol.yaml","Galactitol"]]},{"id":"CHEBI:17488","l":"","na":9,"nb":1,"a":[["EC%3A1.14.11.60","scopoletin 8-hydroxylase"],["EC%3A2.4.1.128","scopoletin glucosyltransferase"],["RHEA%3A68564","6-methoxycoumarin + reduced [NADPH--hemoprotein reductase] + O2 = scopoletin + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A57860","(E)-6-hydroxyferuloyl-CoA = scopoletin + CoA"],["RHEA%3A68948","esculetin + S-adenosyl-L-methionine = scopoletin + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A57848","scopoletin + 2-oxoglutarate + O2 = fraxetin + succinate + CO2"]],"b":[["mapped/Scopoletin.yaml","Scopoletin"]]},{"id":"CHEBI:18248","l":"iron atom","na":9,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_18248","requires Fe"],["proteintraitsmech%3AMETALPDB_FE_DINUCLEAR","dinuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_HEPTANUCLEAR","heptanuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_HEXANUCLEAR","hexanuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_MONONUCLEAR","mononuclear iron site"],["proteintraitsmech%3AMETALPDB_FE_OCTANUCLEAR","octanuclear iron site"]],"b":[["mapped/Iron.yaml","Iron"]]},{"id":"CHEBI:18333","l":"","na":9,"nb":1,"a":[["EC%3A1.1.1.11","D-arabinitol 4-dehydrogenase"],["EC%3A1.1.1.250","D-arabinitol 2-dehydrogenase"],["EC%3A1.1.1.287","D-arabinitol dehydrogenase (NADP(+))"],["EC%3A1.1.3.40","D-mannitol oxidase"],["RHEA%3A17389","D-arabinitol + NAD(+) = D-ribulose + NADH + H(+)"],["RHEA%3A17921","D-arabinitol + NAD(+) = D-xylulose + NADH + H(+)"]],"b":[["mapped/D-arabitol.yaml","D-arabitol"]]},{"id":"CHEBI:29995","l":"","na":9,"nb":1,"a":[["GO%3A0070335","aspartate binding"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A2.A.81","The Aspartate:Alanine Exchanger (AAEx) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.13","The C4-Dicarboxylate Uptake (Dcu) Family"],["TCDB%3A2.A.23","The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family"]],"b":[["mapped/Aspartate.yaml","Aspartate"]]},{"id":"CHEBI:3098","l":"bile acid","na":9,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.28","The Bile Acid:Na+ Symporter (BASS) Family"],["TCDB%3A1.B.1","The General Bacterial Porin (GBP) Family"],["TCDB%3A9.A.19","The Lipid Intermediate Transporter (Arv1) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"]],"b":[["mapped/Bile_Acid.yaml","Bile Acid"]]},{"id":"CHEBI:12931","l":"D-galactonate","na":8,"nb":1,"a":[["EC%3A3.1.1.25","1,4-lactonase"],["EC%3A4.2.1.140","gluconate/galactonate dehydratase"],["EC%3A4.2.1.6","galactonate dehydratase"],["RHEA%3A18649","D-galactonate = 2-dehydro-3-deoxy-D-galactonate + H2O"],["RHEA%3A29835","D-galactonate(in) + H(+)(in) = D-galactonate(out) + H(+)(out)"],["RHEA%3A44900","D-galactono-1,4-lactone + H2O = D-galactonate + H(+)"]],"b":[["mapped/D-galactonate.yaml","D-galactonate"]]},{"id":"CHEBI:15570","l":"","na":8,"nb":1,"a":[["ARO%3A3004946","cycloserine resistant alr"],["ARO%3A3004939","cycloserine resistant ddlA"],["ARO%3A3004947","Mycobacterium tuberculosis alr with mutation conferring resistance to cycloserine"],["ARO%3A3004941","Mycobacterium tuberculosis ddlA mutations confer resistance to cycloserine"],["TCDB%3A2.A.81","The Aspartate:Alanine Exchanger (AAEx) Family"],["MCSA%3A782","D-stereospecific aminopeptidase (peptidase S12 family)"]],"b":[["mapped/D-Alanine.yaml","D-Alanine"]]},{"id":"CHEBI:15963","l":"","na":8,"nb":1,"a":[["EC%3A1.1.1.56","ribitol 2-dehydrogenase"],["EC%3A3.5.99.1","riboflavinase"],["RHEA%3A47652","D-ribitol 1-phosphate + H2O = ribitol + phosphate"],["RHEA%3A47648","D-ribitol 5-phosphate + H2O = ribitol + phosphate"],["RHEA%3A20053","ribitol + NAD(+) = D-ribulose + NADH + H(+)"],["RHEA%3A59932","ribitol + NADP(+) = D-ribose + NADPH + H(+)"]],"b":[["mapped/Ribitol.yaml","Ribitol"]]},{"id":"CHEBI:16164","l":"","na":8,"nb":1,"a":[["EC%3A1.13.11.35","pyrogallol 1,2-oxygenase"],["EC%3A1.97.1.2","pyrogallol hydroxytransferase"],["EC%3A4.1.1.59","gallate decarboxylase"],["RHEA%3A21000","1,2,3,5-tetrahydroxybenzene + 1,2,3-trihydroxybenzene = 1,2,3,5-tetrahydroxybenzene + 1,3,5-trihydroxybenzene"],["RHEA%3A19673","1,2,3-trihydroxybenzene + O2 = (2Z,4E)-2-hydroxyhexa-2,4-dienedioate + 2 H(+)"],["RHEA%3A12749","3,4,5-trihydroxybenzoate + H(+) = 1,2,3-trihydroxybenzene + CO2"]],"b":[["mapped/Pyrogallol.yaml","Pyrogallol"]]},{"id":"CHEBI:16397","l":"","na":8,"nb":1,"a":[["EC%3A3.5.1.49","formamidase"],["EC%3A3.5.3.8","formimidoylglutamase"],["EC%3A4.2.1.66","cyanide hydratase"],["RHEA%3A21948","formamide + H2O = formate + NH4(+)"],["RHEA%3A21720","formamide = hydrogen cyanide + H2O"],["RHEA%3A74387","formamide(out) = formamide(in)"]],"b":[["mapped/Formamide.yaml","Formamide"]]},{"id":"CHEBI:16634","l":"raffinose","na":8,"nb":1,"a":[["EC%3A2.4.1.166","raffinose--raffinose alpha-galactosyltransferase"],["EC%3A2.4.1.67","galactinol--raffinose galactosyltransferase"],["EC%3A2.4.1.82","galactinol--sucrose galactosyltransferase"],["RHEA%3A14125","2 raffinose = 1(F)-alpha-D-galactosylraffinose + sucrose"],["RHEA%3A20776","alpha-D-galactosyl-(1->3)-1D-myo-inositol + raffinose = stachyose + myo-inositol"],["RHEA%3A20161","alpha-D-galactosyl-(1->3)-1D-myo-inositol + sucrose = raffinose + myo-inositol"]],"b":[["mapped/Raffinose.yaml","Raffinose"]]},{"id":"CHEBI:17464","l":"","na":8,"nb":1,"a":[["EC%3A1.1.1.316","L-galactose 1-dehydrogenase"],["EC%3A1.3.2.3","L-galactonolactone dehydrogenase"],["EC%3A1.3.3.12","L-galactonolactone oxidase"],["RHEA%3A14757","L-galactono-1,4-lactone + 2 Fe(III)-[cytochrome c] = L-ascorbate + 2 Fe(II)-[cytochrome c] + 3 H(+)"],["RHEA%3A32367","L-galactono-1,4-lactone + 4 Fe(III)-[cytochrome c] = L-dehydroascorbate + 4 Fe(II)-[cytochrome c] + 5 H(+)"],["RHEA%3A75231","L-galactono-1,4-lactone + H2O = L-galactonate + H(+)"]],"b":[["mapped/L-galactonic_Acid_Gamma-lactone.yaml","L-galactonic Acid Gamma-lactone"]]},{"id":"CHEBI:17871","l":"","na":8,"nb":1,"a":[["EC%3A1.1.1.202","1,3-propanediol dehydrogenase"],["EC%3A4.2.1.30","glycerol dehydratase"],["RHEA%3A62920","1alpha,25-dihydroxy-2beta-(1,3-dihydroxypropoxy)-cholecalciferol = 1alpha,2beta,25-trihydroxycholecalciferol + 3-hydroxypropanal"],["RHEA%3A59432","3-hydroxypropanal + NAD(+) + H2O = 3-hydroxypropanoate + NADH + 2 H(+)"],["RHEA%3A59428","3-hydroxypropanal + NADP(+) + H2O = 3-hydroxypropanoate + NADPH + 2 H(+)"],["RHEA%3A19765","glycerol = 3-hydroxypropanal + H2O"]],"b":[["mapped/3-Hydroxypropanal.yaml","3-Hydroxypropanal"]]},{"id":"CHEBI:18403","l":"L-arabinitol","na":8,"nb":1,"a":[["EC%3A1.1.1.12","L-arabinitol 4-dehydrogenase"],["EC%3A1.1.1.13","L-arabinitol 2-dehydrogenase"],["EC%3A1.1.1.21","aldose reductase"],["RHEA%3A25225","L-arabinitol + NAD(+) = L-arabinose + NADH + H(+)"],["RHEA%3A21356","L-arabinitol + NAD(+) = L-ribulose + NADH + H(+)"],["RHEA%3A16381","L-arabinitol + NAD(+) = L-xylulose + NADH + H(+)"]],"b":[["mapped/Arabitol.yaml","Arabitol"]]},{"id":"CHEBI:27949","l":"(E)-sinapaldehyde","na":8,"nb":1,"a":[["EC%3A1.1.1.195","cinnamyl-alcohol dehydrogenase"],["RHEA%3A72027","(E)-sinapaldehyde + L-proline = (E)-nesocodin (alcohol-form) + H2O"],["RHEA%3A64656","(E)-sinapaldehyde + NADP(+) + CoA = (E)-sinapoyl-CoA + NADPH + H(+)"],["RHEA%3A57712","(E)-sinapaldehyde + UDP-alpha-D-glucose = 4-O-(beta-D-glucosyl)-4-trans-sinapoyl aldehyde + UDP + H(+)"],["RHEA%3A76459","(E)-sinapyl alcohol + A = (E)-sinapaldehyde + AH2"],["RHEA%3A45704","(E)-sinapyl alcohol + NADP(+) = (E)-sinapaldehyde + NADPH + H(+)"]],"b":[["mapped/Sinapinaldehyde.yaml","sinapinaldehyde"]]},{"id":"CHEBI:28644","l":"2-oxopentanoate","na":8,"nb":1,"a":[["RHEA%3A50312","2-oxopentanoate + H(+) = butanal + CO2"],["RHEA%3A66080","2-oxopentanoate + L-kynurenine = L-2-aminopentanoate + 4-(2-aminophenyl)-2,4-dioxobutanoate"],["RHEA%3A66076","2-oxopentanoate + L-kynurenine = L-2-aminopentanoate + kynurenate + H2O"],["RHEA%3A77359","2-oxopentanoate + N(omega),N(omega)-dimethyl-L-arginine = 5-(3,3-dimethylguanidino)-2-oxopentanoate + L-2-aminopentanoate"],["RHEA%3A82487","(2R)-hydroxypentanoate + FAD + H(+) = 2-oxopentanoate + FADH2"],["RHEA%3A37035","L-2-aminopentanoate + NAD(+) + H2O = 2-oxopentanoate + NH4(+) + NADH + H(+)"]],"b":[["mapped/2-oxopentanoate.yaml","2-oxopentanoate"]]},{"id":"CHEBI:48944","l":"","na":8,"nb":1,"a":[["EC%3A2.7.2.14","branched-chain-fatty-acid kinase"],["RHEA%3A80347","(1R,2R,3S,8R,10R,11R,15S,16S)-3-(acetyloxy)-15-[(4R)-4-[(2S)-3,3-dimethyloxiran-2-yl]-1,4-dihydroxybutan-2-yl]-2,7,7,11,16-pentamethyl-5-oxo-6-oxatetracyclo[9.7.0.0(2,8).0(12,16)]octadec-12-en-10-yl acetate + reduced [NADPH--hemoprotein reductase] + O2 = (1R,2R,3S,8R,10R,11R,15S,16S)-3-(acetyloxy)-15-(1-hydroxy-4-oxobutan-2-yl)-2,7,7,11,16-pentamethyl-5-oxo-6-oxatetracyclo[9.7.0.0(2,8).0(12,16)]octadec-12-en-10-yl acetate + 2-methylpropanoate + oxidized [NADPH--hemoprotein reductase] + H2O + 2 H(+)"],["RHEA%3A80351","(1S,3bR,4R,5aR,9aR,9bR,11aS)-1-[(4R)-5-[(2S)-3,3-dimethyloxiran-2-yl]-1,4-dihydroxybutan-2-yl]-3b,6,6,9a,11a-pentamethyl-7-oxo-1H,2H,3bH,4H,5H,5aH,6H,7H,9aH,9bH,10H,11H,11aH-cyclopenta[a]phenanthren-4-yl acetate + reduced [NADPH--hemoprotein reductase] + O2 = (1S,3bR,4R,5aR,9aR,9bR,11aS)-1-(1-hydroxy-4-oxobutan-2-yl)-3b,6,6,9a,11a-pentamethyl-7-oxo-1H,2H,3bH,4H,5H,5aH,6H,7H,9aH,9bH,10H,11H,11aH-cyclopenta[a]phenanthren-4-yl acetate + 2-methylpropanoate + oxidized [NADPH--hemoprotein reductase] + H2O + 2 H(+)"],["RHEA%3A42576","2-hydroxy-7-methyl-6-oxo-(2E,4E)-octadienoate + H2O = 2-oxopent-4-enoate + 2-methylpropanoate + H(+)"],["RHEA%3A24156","2-methylpropanoate + ATP = 2-methylpropanoyl phosphate + ADP"],["RHEA%3A46176","2-methylpropanoate + ATP + CoA = 2-methylpropanoyl-CoA + AMP + diphosphate"]],"b":[["mapped/Isobutyrate.yaml","Isobutyrate"]]},{"id":"CHEBI:53071","l":"L-galactonate","na":8,"nb":1,"a":[["EC%3A1.1.1.365","D-galacturonate reductase"],["EC%3A1.1.1.414","L-galactonate 5-dehydrogenase"],["EC%3A4.2.1.146","L-galactonate dehydratase"],["RHEA%3A38103","L-galactonate = 2-dehydro-3-deoxy-L-galactonate + H2O"],["RHEA%3A28823","L-galactonate(in) + H(+)(in) = L-galactonate(out) + H(+)(out)"],["RHEA%3A30183","L-galactonate + NAD(+) = keto-D-tagaturonate + NADH + H(+)"]],"b":[["mapped/L-galactonate.yaml","L-galactonate"]]},{"id":"CHEBI:6030","l":"isoniazide","na":8,"nb":1,"a":[["ARO%3A3004266","antibiotic resistant katG"],["ARO%3A3003416","isoniazid resistant katG"],["ARO%3A3003392","Mycobacterium tuberculosis katG mutations conferring resistance to isoniazid"],["ARO%3A3005102","Mycobacterium tuberculosis katG mutations conferring resistance to prothionamide"],["ARO%3A3005101","prothionamide resistant katG"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"]],"b":[["mapped/Isoniazid.yaml","Isoniazid"]]},{"id":"CHEBI:15226","l":"","na":7,"nb":1,"a":[["EC%3A1.8.2.2","thiosulfate dehydrogenase"],["EC%3A1.8.5.2","thiosulfate dehydrogenase (quinone)"],["RHEA%3A20549","2 thiosulfate + 2 Fe(III)-[cytochrome c] = tetrathionate + 2 Fe(II)-[cytochrome c] + 2 H(+)"],["RHEA%3A10936","6-decylubiquinone + 2 thiosulfate = 6-decylubiquinol + tetrathionate"],["RHEA%3A13541","tetrathionate + H2O = sulfur + thiosulfate + sulfate + H(+)"],["TCDB%3A5.A.3","The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family"]],"b":[["mapped/Tetrathionate.yaml","Tetrathionate"]]},{"id":"CHEBI:15837","l":"isoamylol","na":7,"nb":1,"a":[["EC%3A1.1.1.265","3-methylbutanal reductase"],["EC%3A3.1.1.112","isoamyl acetate esterase"],["RHEA%3A65236","3-methylbutan-1-ol + acetyl-CoA = 3-methylbutyl acetate + CoA"],["RHEA%3A85967","3-methylbutan-1-ol + hexadecanoyl-CoA = 3-methylbutyl hexadecanoate + CoA"],["RHEA%3A18529","3-methylbutan-1-ol + NAD(+) = 3-methylbutanal + NADH + H(+)"],["RHEA%3A18525","3-methylbutan-1-ol + NADP(+) = 3-methylbutanal + NADPH + H(+)"]],"b":[["mapped/3-methyl-1-butanol.yaml","3-methyl-1-butanol"]]},{"id":"CHEBI:16118","l":"berberine","na":7,"nb":1,"a":[["EC%3A1.21.3.2","columbamine oxidase"],["EC%3A1.3.3.8","tetrahydroberberine oxidase"],["EC%3A1.5.1.31","berberine reductase"],["RHEA%3A23564","2 columbamine + O2 = 2 berberine + 2 H2O"],["RHEA%3A21268","(R)-canadine + 2 NADP(+) = berberine + 2 NADPH + H(+)"],["RHEA%3A13489","(S)-canadine + 2 O2 + H(+) = berberine + 2 H2O2"]],"b":[["mapped/Berberine.yaml","Berberine"]]},{"id":"CHEBI:16737","l":"creatinine","na":7,"nb":1,"a":[["EC%3A3.5.2.10","creatininase"],["EC%3A3.5.4.21","creatinine deaminase"],["RHEA%3A14533","creatinine + H2O = creatine"],["RHEA%3A12681","creatinine + H2O + H(+) = N-methylhydantoin + NH4(+)"],["RHEA%3A74539","creatinine(in) = creatinine(out)"],["RHEA%3A72183","creatinine(in) + H(+)(out) = creatinine(out) + H(+)(in)"]],"b":[["mapped/Creatinine.yaml","Creatinine"]]},{"id":"CHEBI:16892","l":"","na":7,"nb":1,"a":[["EC%3A2.7.1.49","hydroxymethylpyrimidine kinase"],["EC%3A3.5.99.2","aminopyrimidine aminohydrolase"],["RHEA%3A31799","4-amino-5-aminomethyl-2-methylpyrimidine + H2O = 4-amino-5-hydroxymethyl-2-methylpyrimidine + NH4(+)"],["RHEA%3A23096","4-amino-5-hydroxymethyl-2-methylpyrimidine + ATP = 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine + ADP + H(+)"],["RHEA%3A17509","thiamine + H2O = 5-(2-hydroxyethyl)-4-methylthiazole + 4-amino-5-hydroxymethyl-2-methylpyrimidine + H(+)"],["MCSA%3A670","hydroxymethylpyrimidine kinase"]],"b":[["mapped/4-Amino-5-hydroxymethyl-2-methylpyrimidine.yaml","4-Amino-5-hydroxymethyl-2-methylpyrimidine"]]},{"id":"CHEBI:16997","l":"","na":7,"nb":1,"a":[["EC%3A1.1.1.55","lactaldehyde reductase (NADPH)"],["EC%3A4.2.1.28","propanediol dehydratase"],["RHEA%3A56584","1,2-epoxypropane + H2O = propane-1,2-diol"],["RHEA%3A15885","propane-1,2-diol + NADP(+) = (S)-lactaldehyde + NADPH + H(+)"],["RHEA%3A14569","propane-1,2-diol = propanal + H2O"],["TCDB%3A1.S.4","The Bacterial Microcompartment Shell/Pore-forming Protein-4 (BMC-SP4) Family"]],"b":[["mapped/12-Propanediol.yaml","1,2-Propanediol"]]},{"id":"CHEBI:17113","l":"","na":7,"nb":1,"a":[["EC%3A2.7.1.215","erythritol kinase (D-erythritol 1-phosphate-forming)"],["EC%3A2.7.1.27","erythritol kinase (D-erythritol 4-phosphate-forming)"],["RHEA%3A49624","erythritol + ATP = D-erythritol 1-phosphate + ADP + H(+)"],["RHEA%3A20708","erythritol + ATP = D-erythritol 4-phosphate + ADP + H(+)"],["RHEA%3A48756","erythritol + NAD(+) = D-erythrulose + NADH + H(+)"],["RHEA%3A59928","erythritol + NADP(+) = D-erythrose + NADPH + H(+)"]],"b":[["mapped/Meso-Erythritol.yaml","meso-Erythritol"]]},{"id":"CHEBI:17634","l":"D-glucose","na":1,"nb":7,"a":[["MCSA%3A976","α‑glucosidase maltase-glucoamylase"]],"b":[["mapped/Brain_Heart_Infusion_Broth.yaml","Brain heart infusion broth"],["mapped/D-glucose.yaml","D-Glucose"],["mapped/Dextrose.yaml","Dextrose"],["mapped/Glucose_Acetate.yaml","Glucose + Acetate"],["mapped/Glucose_Cellobiose_Starch_Trypticase_Yeast_Extract.yaml","Glucose + Cellobiose + Starch + Trypticase + Yeast Extract"],["mapped/Glucose_Formate.yaml","Glucose + Formate"]]},{"id":"CHEBI:1883","l":"","na":7,"nb":1,"a":[["EC%3A1.13.11.94","4-vinylguaiacol dioxygenase"],["EC%3A4.1.1.102","phenacrylate decarboxylase"],["RHEA%3A70603","4-vinylphenol + NADH + H(+) = 4-ethylphenol + NAD(+)"],["RHEA%3A80571","4-vinylphenol + O2 = 4-hydroxybenzaldehyde + formaldehyde"],["RHEA%3A86075","4-vinylphenol + S-adenosyl-L-methionine = 4-vinylanisole + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A33227","(E)-4-coumarate + H(+) = 4-vinylphenol + CO2"]],"b":[["mapped/4-vinylphenol.yaml","4-vinylphenol"]]},{"id":"CHEBI:30742","l":"ethylene glycol","na":7,"nb":1,"a":[["EC%3A3.1.1.102","mono(ethylene terephthalate) hydrolase"],["RHEA%3A42648","(2,5-ethylene furandicarboxylate)(n) + 2 H2O = (2,5-ethylene furandicarboxylate)(n-1) + 2,5-dicarboxyfuran + ethylene glycol + 2 H(+)"],["RHEA%3A49532","4-[(2-hydroxyethoxy)carbonyl]benzoate + H2O = terephthalate + ethylene glycol + H(+)"],["RHEA%3A80759","bis(2-hydroxyethyl) terephthalate + H2O = 4-[(2-hydroxyethoxy)carbonyl]benzoate + ethylene glycol + H(+)"],["RHEA%3A27630","ethylene glycol + NAD(+) = glycolaldehyde + NADH + H(+)"],["MCSA%3A847","epoxide hydrolase"]],"b":[["mapped/Ethylene_Glycol.yaml","Ethylene glycol"]]},{"id":"CHEBI:50205","l":"","na":7,"nb":1,"a":[["EC%3A4.1.2.61","feruloyl-CoA hydratase/lyase"],["RHEA%3A36311","3,4-dihydroxybenzaldehyde + NAD(+) + H2O = 3,4-dihydroxybenzoate + NADH + 2 H(+)"],["RHEA%3A72539","3,4-dihydroxybenzaldehyde + NADP(+) + H2O = 3,4-dihydroxybenzoate + NADPH + 2 H(+)"],["RHEA%3A63188","3,4-dihydroxybenzaldehyde + tyramine + AH2 = norbelladine + A + H2O"],["RHEA%3A62428","3-hydroxy-3-(3,4-dihydroxyphenyl)propanoyl-CoA = 3,4-dihydroxybenzaldehyde + acetyl-CoA"],["RHEA%3A36307","(E)-caffeoyl-CoA + H2O = 3,4-dihydroxybenzaldehyde + acetyl-CoA"]],"b":[["mapped/Protocatechualdehyde.yaml","Protocatechualdehyde"]]},{"id":"CHEBI:62974","l":"","na":7,"nb":1,"a":[["RHEA%3A84443","D-cellotetraose = beta-D-glucosyl-(1->4)-beta-D-glucosyl-(1->4)-beta-D-glucosyl-(1->4)-D-mannopyranose"],["RHEA%3A59660","D-cellotetraose + O2 = D-cellotetraono-1,5-lactone + H2O2"],["MCSA%3A560","cellulase (GH12)"],["MCSA%3A561","cellulase (GH45)"],["MCSA%3A559","cellulase (GH9)"],["MCSA%3A440","cellulose 1,4-beta-cellobiosidase (non-reducing end)"]],"b":[["mapped/Cellotetraose.yaml","Cellotetraose"]]},{"id":"CHEBI:9349","l":"","na":7,"nb":1,"a":[["EC%3A1.14.13.245","assimilatory dimethylsulfide S-monooxygenase"],["EC%3A1.14.14.35","dimethylsulfone monooxygenase"],["EC%3A1.8.1.17","dimethylsulfone reductase"],["RHEA%3A50716","dimethyl sulfone + FMNH2 + O2 = methanesulfinate + FMN + formaldehyde + H2O + 2 H(+)"],["RHEA%3A30219","dimethyl sulfoxide + NAD(+) + H2O = dimethyl sulfone + NADH + H(+)"],["RHEA%3A57956","dimethyl sulfoxide + NADH + O2 + H(+) = dimethyl sulfone + NAD(+) + H2O"]],"b":[["mapped/Dimethyl_Sulfone.yaml","dimethyl sulfone"]]},{"id":"CHEBI:15399","l":"(+)-carvone","na":6,"nb":1,"a":[["EC%3A1.1.1.275","(+)-trans-carveol dehydrogenase"],["EC%3A1.1.1.n4","(-)-trans-carveol dehydrogenase"],["EC%3A1.3.99.25","carvone reductase"],["RHEA%3A32427","(1R,4S)-isodihydrocarvone + A = (S)-carvone + AH2"],["RHEA%3A14825","(1R,5S)-carveol + NAD(+) = (S)-carvone + NADH + H(+)"],["RHEA%3A25848","(1S,5S)-carveol + NAD(+) = (S)-carvone + NADH + H(+)"]],"b":[["mapped/D_-carvone.yaml","D(+)-Carvone"]]},{"id":"CHEBI:15409","l":"","na":6,"nb":1,"a":[["EC%3A1.1.1.207","(-)-menthol dehydrogenase"],["EC%3A1.14.13.46","(-)-menthol monooxygenase"],["EC%3A2.4.1.127","monoterpenol beta-glucosyltransferase"],["RHEA%3A13917","(-)-menthol + NADP(+) = (1R,4S)-menthone + NADPH + H(+)"],["RHEA%3A11648","(-)-menthol + NADPH + O2 + H(+) = 1,4-menthane-3,8-diol + NADP(+) + H2O"],["RHEA%3A11520","(-)-menthol + UDP-alpha-D-glucose = (-)-menthyl beta-D-glucoside + UDP + H(+)"]],"b":[["mapped/Levomenthol.yaml","Levomenthol"]]},{"id":"CHEBI:15978","l":"sn-glycerol 3-phosphate","na":1,"nb":6,"a":[["proteintraitsmech%3ABIOLIP_G3P","G3P-binding site"]],"b":[["mapped/Glycerol_2.yaml","glycerol"],["mapped/Glycerol_3-phosphate.yaml","Glycerol 3-phosphate"],["mapped/Na2_Beta-glycerol_PO4_X_5_H2O.yaml","Na2 beta-glycerol PO4 x 5 H2O"],["mapped/Na2glycerophosphate5h2o.yaml","Na2glycerophosphate•5H2O"],["mapped/Sn-Glycerol_3-phosphate_Lithium_Salt.yaml","sn-Glycerol 3-phosphate lithium salt"],["mapped/Sn-glycerol_3-phosphate_Bis_Cyclohexylammonium_Salt.yaml","sn-Glycerol 3-phosphate bis(cyclohexylammonium) salt"]]},{"id":"CHEBI:16457","l":"S,S-dimethyl-beta-propiothetin","na":6,"nb":1,"a":[["EC%3A2.1.1.269","dimethylsulfoniopropionate demethylase"],["EC%3A4.4.1.3","dimethylpropiothetin dethiomethylase"],["RHEA%3A35467","S,S-dimethyl-beta-propiothetin + (6S)-5,6,7,8-tetrahydrofolate = 3-(methylsulfanyl)propanoate + (6S)-5-methyl-5,6,7,8-tetrahydrofolate + H(+)"],["RHEA%3A19965","S,S-dimethyl-beta-propiothetin = acrylate + dimethyl sulfide + H(+)"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.15","The Betaine/Carnitine/Choline Transporter (BCCT) Family"]],"b":[["mapped/Dimethylsulfoniopropionate_Hydrochloride.yaml","Dimethylsulfoniopropionate hydrochloride"]]},{"id":"CHEBI:16583","l":"","na":6,"nb":1,"a":[["EC%3A1.1.1.303","diacetyl reductase [(R)-acetoin forming]"],["EC%3A1.1.1.304","diacetyl reductase [(S)-acetoin forming]"],["RHEA%3A35607","acetoin + NADP(+) = diacetyl + NADPH + H(+)"],["RHEA%3A22900","(R)-acetoin + NAD(+) = diacetyl + NADH + H(+)"],["RHEA%3A27286","(S)-acetoin + NAD(+) = diacetyl + NADH + H(+)"],["proteintraitsmech%3ABIOLIP_BUO","BUO-binding site"]],"b":[["mapped/Diacetyl.yaml","Diacetyl"]]},{"id":"CHEBI:16719","l":"","na":6,"nb":1,"a":[["EC%3A1.1.1.168","2-dehydropantolactone reductase (Re-specific)"],["EC%3A1.1.1.214","2-dehydropantolactone reductase (Si-specific)"],["EC%3A1.1.1.358","2-dehydropantolactone reductase"],["EC%3A1.1.99.27","(R)-pantolactone dehydrogenase (flavin)"],["RHEA%3A21004","(R)-pantolactone + A = 2-dehydropantolactone + AH2"],["RHEA%3A18981","(R)-pantolactone + NADP(+) = 2-dehydropantolactone + NADPH + H(+)"]],"b":[["mapped/D-_-pantolactone.yaml","D-(-)-Pantolactone"]]},{"id":"CHEBI:17276","l":"","na":6,"nb":1,"a":[["EC%3A2.4.1.357","phlorizin synthase"],["EC%3A3.7.1.4","phloretin hydrolase"],["RHEA%3A23396","phloretin + H2O = phloretate + 1,3,5-trihydroxybenzene + H(+)"],["RHEA%3A51576","phloretin + UDP-alpha-D-glucose = phlorizin + UDP + H(+)"],["RHEA%3A65148","phloretin + UDP-alpha-D-glucose = trilobatin + UDP + H(+)"],["RHEA%3A69639","phlorizin + H2O = phloretin + beta-D-glucose"]],"b":[["mapped/Phloretin.yaml","Phloretin"]]},{"id":"CHEBI:17489","l":"","na":6,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_17489","requires cAMP"],["ARO%3A3004251","antibiotic-resistant cya adenylate cyclase"],["ARO%3A3004250","antibiotic-resistant ptsI phosphotransferase"],["ARO%3A3003900","Escherichia coli cyaA with mutation conferring resistance to fosfomycin"],["ARO%3A3003899","Escherichia coli PtsI with mutation conferring resistance to fosfomycin"],["proteintraitsmech%3ABIOLIP_CMP","CMP-binding site"]],"b":[["mapped/Adenosine_35-Cyclic_Monophosphate.yaml","Adenosine 3,5-Cyclic Monophosphate"]]},{"id":"CHEBI:17580","l":"linalool","na":6,"nb":1,"a":[["EC%3A1.14.14.84","linalool 8-monooxygenase"],["EC%3A5.4.4.8","linalool isomerase"],["RHEA%3A68708","(2E)-geranyl diphosphate + H2O = linalool + diphosphate"],["RHEA%3A32635","linalool + 2 reduced [NADPH--hemoprotein reductase] + 2 O2 = (6E)-8-oxolinalool + 2 oxidized [NADPH--hemoprotein reductase] + 3 H2O + 2 H(+)"],["RHEA%3A54656","linalool = (2E)-geraniol"],["RHEA%3A32503","linalool + reduced [NADPH--hemoprotein reductase] + O2 = (6E)-8-hydroxylinalool + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"]],"b":[["mapped/Linalool.yaml","Linalool"]]},{"id":"CHEBI:18246","l":"(1->4)-beta-D-glucan","na":6,"nb":1,"a":[["EC%3A2.4.1.12","cellulose synthase (UDP-forming)"],["EC%3A2.4.1.29","cellulose synthase (GDP-forming)"],["EC%3A2.4.1.49","cellodextrin phosphorylase"],["RHEA%3A17797","[(1->4)-beta-D-glucosyl](n) + GDP-alpha-D-glucose = [(1->4)-beta-D-glucosyl](n+1) + GDP + H(+)"],["RHEA%3A23024","[(1->4)-beta-D-glucosyl](n) + phosphate = [(1->4)-beta-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate"],["RHEA%3A19929","[(1->4)-beta-D-glucosyl](n) + UDP-alpha-D-glucose = [(1->4)-beta-D-glucosyl](n+1) + UDP + H(+)"]],"b":[["mapped/Cellulose.yaml","Cellulose"]]},{"id":"CHEBI:22653","l":"asparagine","na":6,"nb":1,"a":[["TCDB%3A2.A.25","The Alanine or Glycine:Cation Symporter (AGCS) Family"],["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.13","The C4-Dicarboxylate Uptake (Dcu) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"]],"b":[["mapped/Asparagine.yaml","Asparagine"]]},{"id":"CHEBI:28053","l":"melibiose","na":6,"nb":1,"a":[["RHEA%3A28663","melibiose + H2O = D-galactose + D-glucose"],["RHEA%3A28855","melibiose(in) + H(+)(in) = melibiose(out) + H(+)(out)"],["RHEA%3A28847","melibiose(in) + Li(+)(in) = melibiose(out) + Li(+)(out)"],["RHEA%3A28851","melibiose(in) + Na(+)(in) = melibiose(out) + Na(+)(out)"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["MCSA%3A913","alpha-galactosidase"]],"b":[["mapped/Melibiose.yaml","Melibiose"]]},{"id":"CHEBI:28903","l":"","na":6,"nb":1,"a":[["RHEA%3A38223","decan-1-ol + (9Z)-octadecenoyl-CoA = decyl (9Z)-octadecenoate + CoA"],["RHEA%3A44096","decan-1-ol + hexadecanoyl-CoA = decyl hexadecanoate + CoA"],["RHEA%3A58376","decan-1-ol + NADP(+) = decanal + NADPH + H(+)"],["RHEA%3A69496","decan-1-ol + O2 = decanal + H2O2"],["RHEA%3A76755","decan-1-ol + reduced [NADPH--hemoprotein reductase] + O2 = 1,3-decanediol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A76775","decan-1-ol + reduced [NADPH--hemoprotein reductase] + O2 = 1,7-decanediol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"]],"b":[["mapped/Decyl_Alcohol.yaml","decyl alcohol"]]},{"id":"CHEBI:28911","l":"cob(III)alamin","na":6,"nb":1,"a":[["RHEA%3A81907","(2R,3R,5R)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + methylcob(III)alamin + S-adenosyl-L-methionine = (2R,3R,5S,6R)-6-(methyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A81911","(2R,3R,5S,6R)-6-(methyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + methylcob(III)alamin + S-adenosyl-L-methionine = (2R,3R,5S,6R)-6-(ethyl)-2-(S-pantetheinyl)-carbapenam-3-carboxylate + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A76471","cob(III)alamin + AH2 = cob(I)alamin + A + 2 H(+)"],["RHEA%3A81883","cytidine 5'-{[hydroxy(2-hydroxyethyl)phosphonoyl]phosphate} + methylcob(III)alamin + S-adenosyl-L-methionine = cytidine 5'-({hydroxy[(S)-2-hydroxypropyl]phosphonoyl}phosphate) + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A77223","gentamicin X2 + methylcob(III)alamin + S-adenosyl-L-methionine = geneticin + cob(III)alamin + 5'-deoxyadenosine + L-methionine"],["RHEA%3A81891","N-acetyl-demethyl-L-phosphinothricin + methylcob(III)alamin + S-adenosyl-L-methionine = N-acetyl-L-phosphinothricin + cob(III)alamin + 5'-deoxyadenosine + L-methionine"]],"b":[["mapped/Cobalamine.yaml","Cobalamine"]]},{"id":"CHEBI:28997","l":"","na":6,"nb":1,"a":[["EC%3A3.5.4.4","adenosine deaminase"],["RHEA%3A28190","2'-deoxyadenosine + H2O + H(+) = 2'-deoxyinosine + NH4(+)"],["RHEA%3A29971","2'-deoxyinosine(in) + H(+)(in) = 2'-deoxyinosine(out) + H(+)(out)"],["RHEA%3A27750","2'-deoxyinosine + phosphate = 2-deoxy-alpha-D-ribose 1-phosphate + hypoxanthine"],["RHEA%3A29383","dIMP + H2O = 2'-deoxyinosine + phosphate"],["RHEA%3A69572","dIMP + inosine = 2'-deoxyinosine + IMP"]],"b":[["mapped/2-deoxyinosine.yaml","2'-Deoxyinosine"]]},{"id":"CHEBI:3020","l":"","na":6,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.117","The Chlorhexadine Exporter (CHX) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/Benzalkonium_Chloride.yaml","Benzalkonium Chloride"]]},{"id":"CHEBI:30477","l":"","na":6,"nb":1,"a":[["EC%3A2.1.1.265","tellurite methyltransferase"],["RHEA%3A68940","tellurite(in) + Na(+)(in) = tellurite(out) + Na(+)(out)"],["RHEA%3A34539","tellurite + S-adenosyl-L-methionine = methanetellurite + S-adenosyl-L-homocysteine"],["TCDB%3A2.A.20","The Inorganic Phosphate Transporter (PiT) Family"],["TCDB%3A2.A.21","The Solute:Sodium Symporter (SSS) Family"],["TCDB%3A2.A.16","The Telurite-resistance/Dicarboxylate Transporter (TDT) Family"]],"b":[["mapped/Tellurite.yaml","Tellurite"]]},{"id":"CHEBI:310312","l":"","na":6,"nb":1,"a":[["EC%3A2.1.1.154","isoliquiritigenin 2'-O-methyltransferase"],["EC%3A2.3.1.170","6'-deoxychalcone synthase"],["RHEA%3A10584","4-coumaroyl-CoA + 3 malonyl-CoA + NADPH + 4 H(+) = isoliquiritigenin + 3 CO2 + NADP(+) + 4 CoA + H2O"],["RHEA%3A79903","isoliquiritigenin = (2S)-liquiritigenin"],["RHEA%3A21608","isoliquiritigenin + S-adenosyl-L-methionine = 2'-O-methylisoliquiritigenin + S-adenosyl-L-homocysteine + H(+)"],["proteintraitsmech%3ABIOLIP_HCC","HCC-binding site"]],"b":[["mapped/Isoliquiritigenin.yaml","Isoliquiritigenin"]]},{"id":"CHEBI:46502","l":"tungstate","na":6,"nb":1,"a":[["EC%3A7.3.2.6","ABC-type tungstate transporter"],["RHEA%3A35295","adenylyl-molybdopterin + tungstate = W-molybdopterin cofactor + AMP + H(+)"],["RHEA%3A35027","tungstate(in) + ATP + H2O = tungstate(out) + ADP + phosphate + H(+)"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.47","The Divalent Anion:Na+ Symporter (DASS) Family"],["proteintraitsmech%3ABIOLIP_WO4","WO4-binding site"]],"b":[["mapped/Tungstate.yaml","Tungstate"]]},{"id":"CHEBI:4883","l":"ethidium bromide","na":6,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A1.A.7","The ATP-gated P2X Receptor Cation Channel (P2X Receptor) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/Ethidium_Bromide.yaml","Ethidium Bromide"]]},{"id":"CHEBI:4917","l":"eugenol","na":6,"nb":1,"a":[["EC%3A1.1.1.318","eugenol synthase"],["EC%3A2.1.1.146","(iso)eugenol O-methyltransferase"],["RHEA%3A32655","eugenol + a carboxylate + NADP(+) = a coniferyl ester + NADPH"],["RHEA%3A24690","eugenol + acetate + NADP(+) = (E)-coniferyl acetate + NADPH"],["RHEA%3A80551","eugenol + S-adenosyl-L-methionine = O-methyleugenol + S-adenosyl-L-homocysteine + H(+)"],["proteintraitsmech%3ABIOLIP_EOL","EOL-binding site"]],"b":[["mapped/Eugenol.yaml","Eugenol"]]},{"id":"CHEBI:16689","l":"D-apiose","na":5,"nb":1,"a":[["EC%3A1.1.1.114","apiose 1-reductase"],["EC%3A5.3.1.36","D-apiose isomerase"],["RHEA%3A56996","aldehydo-D-apiose = apulose"],["RHEA%3A57040","aldehydo-D-apiose = D-apiofuranose"],["RHEA%3A15301","D-apiitol + NAD(+) = aldehydo-D-apiose + NADH + H(+)"]],"b":[["mapped/D-apiose.yaml","D-apiose"]]},{"id":"CHEBI:16865","l":"gamma-aminobutyric acid","na":5,"nb":1,"a":[["TCDB%3A2.A.18","The Amino Acid/Auxin Permease (AAAP) Family"],["TCDB%3A2.A.3","The Amino Acid-Polyamine-Organocation (APC) Family"],["TCDB%3A2.A.42","The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family"],["TCDB%3A2.A.22","The Neurotransmitter:Sodium Symporter (NSS) Family"],["proteintraitsmech%3ABIOLIP_ABU","ABU-binding site"]],"b":[["mapped/Gamma-aminobutyric_Acid.yaml","gamma-Aminobutyric acid"]]},{"id":"CHEBI:17043","l":"biphenyl-2-ol","na":5,"nb":1,"a":[["EC%3A1.14.13.44","2-hydroxybiphenyl 3-monooxygenase"],["EC%3A3.13.1.3","2'-hydroxybiphenyl-2-sulfinate desulfinase"],["RHEA%3A12945","2'-hydroxybiphenyl-2-sulfinate + H2O = biphenyl-2-ol + sulfite + H(+)"],["RHEA%3A11996","biphenyl-2-ol + NADH + O2 + H(+) = biphenyl-2,3-diol + NAD(+) + H2O"],["MCSA%3A971","2'-hydroxybiphenyl-2-sulfinate desulfinase"]],"b":[["mapped/11-Biphenyl-2-ol.yaml","[1,1′-Biphenyl]-2-ol"]]},{"id":"CHEBI:17128","l":"","na":5,"nb":1,"a":[["EC%3A1.2.1.63","6-oxohexanoate dehydrogenase"],["RHEA%3A13397","6-oxohexanoate + NADP(+) + H2O = hexanedioate + NADPH + 2 H(+)"],["RHEA%3A81711","hexanedioate + glutaryl-CoA = hexanedioyl-CoA + glutarate"],["RHEA%3A71743","hexanedioate(in) + 2-oxoglutarate(out) = hexanedioate(out) + 2-oxoglutarate(in)"],["RHEA%3A40583","hexanedioyl-CoA + H2O = hexanedioate + CoA + H(+)"]],"b":[["mapped/Adipate.yaml","Adipate"]]},{"id":"CHEBI:17540","l":"","na":5,"nb":1,"a":[["EC%3A3.2.1.63","1,2-alpha-L-fucosidase"],["RHEA%3A10816","methyl-2-alpha-L-fucopyranosyl-beta-D-galactoside + H2O = methyl beta-D-galactoside + L-fucose"],["RHEA%3A72531","methyl beta-D-galactoside(out) + ATP + H2O = methyl beta-D-galactoside(in) + ADP + phosphate + H(+)"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["proteintraitsmech%3ABIOLIP_MBG","MBG-binding site"]],"b":[["mapped/Methyl-B-D-galactopyranoside.yaml","Methyl-B-D-galactopyranoside"]]},{"id":"CHEBI:17781","l":"","na":5,"nb":1,"a":[["EC%3A3.5.99.1","riboflavinase"],["RHEA%3A86403","lumichrome(in) + ATP + H2O = lumichrome(out) + ADP + phosphate + H(+)"],["RHEA%3A86407","riboflavin + FMNH2 + O2 = lumichrome + D-ribose + FMN + H2O"],["RHEA%3A11408","riboflavin + H2O + H(+) = lumichrome + ribitol"],["proteintraitsmech%3ABIOLIP_LUM","LUM-binding site"]],"b":[["mapped/Lumichrome.yaml","Lumichrome"]]},{"id":"CHEBI:18145","l":"(R,R,R)-α-tocopherol","na":5,"nb":1,"a":[["EC%3A2.1.1.95","tocopherol C-methyltransferase"],["RHEA%3A71507","(+)-alpha-tocopherol(out) = (+)-alpha-tocopherol(in)"],["RHEA%3A45108","(+)-alpha-tocopherol + reduced [NADPH--hemoprotein reductase] + O2 = 13-hydroxy-alpha-tocopherol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A24012","gamma-tocopherol + S-adenosyl-L-methionine = (+)-alpha-tocopherol + S-adenosyl-L-homocysteine + H(+)"],["proteintraitsmech%3ABIOLIP_VIV","VIV-binding site"]],"b":[["mapped/Alpha-Tocopherol.yaml","alpha-Tocopherol"]]},{"id":"CHEBI:22599","l":"arabinose","na":5,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A9.B.142","The Integral membrane Glycosyltransferase family 39 (GT39) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A9.B.28","The Putative Essential Component of the MusEFGKI ABC Transporter, MusI (MusI) Family"],["TCDB%3A2.A.21","The Solute:Sodium Symporter (SSS) Family"]],"b":[["mapped/Arabinose.yaml","Arabinose"]]},{"id":"CHEBI:25979","l":"","na":5,"nb":1,"a":[["EC%3A1.14.14.77","phenylacetonitrile alpha-monooxygenase"],["EC%3A4.8.1.4","phenylacetaldoxime dehydratase"],["RHEA%3A52164","phenylacetonitrile + reduced [NADPH--hemoprotein reductase] + O2 = (R)-mandelonitrile + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A69308","(Z)-phenyl-N-(sulfonatooxy)methanimidothioate = phenylacetonitrile + sulfur + sulfate"],["RHEA%3A20069","(Z)-phenylacetaldehyde oxime = phenylacetonitrile + H2O"]],"b":[["mapped/Benzylcyanide.yaml","Benzylcyanide"]]},{"id":"CHEBI:26672","l":"siderophore","na":5,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_26672","siderophore cofactor class"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A1.B.17","The Outer Membrane Factor (OMF) Family"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/Siderophore.yaml","Siderophore"]]},{"id":"CHEBI:27750","l":"ethyl acetate","na":5,"nb":1,"a":[["EC%3A2.3.1.268","ethanol O-acetyltransferase"],["EC%3A3.1.1.113","ethyl acetate hydrolase"],["RHEA%3A55972","ethanol + acetyl-CoA = ethyl acetate + CoA"],["RHEA%3A58148","ethyl acetate + H2O = ethanol + acetate + H(+)"],["proteintraitsmech%3ABIOLIP_EEE","EEE-binding site"]],"b":[["mapped/Ethyl_Acetate.yaml","ethyl acetate"]]},{"id":"CHEBI:28034","l":"","na":5,"nb":1,"a":[["EC%3A2.3.1.18","galactoside O-acetyltransferase"],["EC%3A2.4.3.1","beta-galactoside alpha-(2,6)-sialyltransferase"],["RHEA%3A15713","a beta-D-galactoside + acetyl-CoA = a 6-acetyl-beta-D-galactoside + CoA"],["RHEA%3A52104","a beta-D-galactoside + CMP-N-acetyl-beta-neuraminate = an N-acetyl-alpha-neuraminyl-(2->6)-beta-D-galactosyl derivative + CMP + H(+)"],["RHEA%3A85983","a beta-D-galactoside + UDP-N-acetyl-alpha-D-glucosamine = an N-acetyl-alpha-D-glucosaminyl-(1->4)-beta-D-galactosyl derivative + UDP + H(+)"]],"b":[["mapped/Beta-D-galactoside.yaml","Beta-D-galactoside"]]},{"id":"CHEBI:30043","l":"","na":5,"nb":1,"a":[["EC%3A1.14.12.15","terephthalate 1,2-dioxygenase"],["EC%3A3.1.1.102","mono(ethylene terephthalate) hydrolase"],["RHEA%3A49532","4-[(2-hydroxyethoxy)carbonyl]benzoate + H2O = terephthalate + ethylene glycol + H(+)"],["RHEA%3A10312","terephthalate + NADH + O2 + H(+) = (3S,4R)-3,4-dihydroxycyclohexa-1,5-diene-1,4-dicarboxylate + NAD(+)"],["TCDB%3A2.A.80","The Tricarboxylate Transporter (TTT) Family"]],"b":[["mapped/Terephthalate.yaml","Terephthalate"]]},{"id":"CHEBI:32588","l":"potassium chloride","na":1,"nb":5,"a":[["TCDB%3A2.A.30","The Cation-Chloride Cotransporter (CCC) Family"]],"b":[["mapped/Kcl.yaml","KCl"],["mapped/Marine_Broth_2216.yaml","Marine broth 2216"],["mapped/Marine_agar_2216.yaml","Marine agar 2216"],["mapped/Mc_general_salts.yaml","Mc_general_salts"],["mapped/Mc_general_salts_SO4free.yaml","Mc_general_salts_SO4free"]]},{"id":"CHEBI:35899","l":"crotonate","na":5,"nb":1,"a":[["EC%3A1.3.1.31","2-enoate reductase"],["RHEA%3A74903","(2E)-2-butenoate + ATP + H(+) = (2E)-but-2-enoyl-AMP + diphosphate"],["RHEA%3A74899","(2E)-2-butenoate + holo-[ACP] + ATP = (2E)-butenoyl-[ACP] + AMP + diphosphate"],["RHEA%3A10200","butanoate + NAD(+) = (2E)-2-butenoate + NADH + H(+)"],["RHEA%3A69172","N(6)-(2E)-butenoyl-L-lysyl-[protein] + H2O = (2E)-2-butenoate + L-lysyl-[protein]"]],"b":[["mapped/Na-crotonate.yaml","Na-crotonate"]]},{"id":"CHEBI:37671","l":"(1->3)-beta-D-glucan","na":5,"nb":1,"a":[["EC%3A2.4.1.30","1,3-beta-oligoglucan phosphorylase"],["EC%3A2.4.1.34","1,3-beta-glucan synthase"],["EC%3A2.4.1.97","1,3-beta-D-glucan phosphorylase"],["RHEA%3A16041","[(1->3)-beta-D-glucosyl](n) + phosphate = [(1->3)-beta-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate"],["RHEA%3A21476","[(1->3)-beta-D-glucosyl](n) + UDP-alpha-D-glucose = [(1->3)-beta-D-glucosyl](n+1) + UDP + H(+)"]],"b":[["mapped/3-beta-d-glucan.yaml","3-beta-D-glucan"]]},{"id":"CHEBI:38028","l":"","na":5,"nb":1,"a":[["EC%3A3.5.2.15","cyanuric acid amidohydrolase"],["EC%3A3.5.4.42","N-isopropylammelide isopropylaminohydrolase"],["RHEA%3A70363","cyanurate + H2O = 1-carboxybiuret + H(+)"],["RHEA%3A14641","cyanurate + H2O = biuret + CO2"],["RHEA%3A23608","N-isopropylammelide + H2O + H(+) = isopropylamine + cyanurate"]],"b":[["mapped/Cyanuric_acid.yaml","Cyanuric acid"]]},{"id":"CHEBI:3962","l":"curcumin","na":5,"nb":1,"a":[["EC%3A1.3.1.n3","curcumin reductase"],["EC%3A2.3.1.217","curcumin synthase"],["RHEA%3A34819","dihydrocurcumin + NADP(+) = curcumin + NADPH + H(+)"],["RHEA%3A34823","(E)-feruloylacetyl-CoA + (E)-feruloyl-CoA + H2O = curcumin + CO2 + 2 CoA"],["RHEA%3A34815","tetrahydrocurcumin + 2 NADP(+) = curcumin + 2 NADPH + 2 H(+)"]],"b":[["mapped/Curcumin.yaml","Curcumin"]]},{"id":"CHEBI:44423","l":"","na":5,"nb":1,"a":[["EC%3A2.6.99.3","O-ureido-L-serine synthase"],["EC%3A3.5.3.25","N(omega)-hydroxy-L-arginine amidinohydrolase"],["RHEA%3A36263","hydroxyurea + O-acetyl-L-serine = O-ureido-L-serine + acetate + H(+)"],["RHEA%3A36791","N(omega)-hydroxy-L-arginine + H2O = hydroxyurea + L-ornithine"],["proteintraitsmech%3ABIOLIP_NHY","NHY-binding site"]],"b":[["mapped/Hydroxyurea.yaml","Hydroxyurea"]]},{"id":"CHEBI:541975","l":"","na":5,"nb":1,"a":[["RHEA%3A42188","3beta-hydroxy-5alpha-androstan-17-one + NAD(+) = 5alpha-androstan-3,17-dione + NADH + H(+)"],["RHEA%3A56916","3beta-hydroxy-5alpha-androstan-17-one + NADP(+) = 5alpha-androstan-3,17-dione + NADPH + H(+)"],["RHEA%3A53480","3beta-hydroxy-5alpha-androstan-17-one + NADPH + H(+) = 5alpha-androstane-3beta,17beta-diol + NADP(+)"],["RHEA%3A43896","3beta-hydroxy-5alpha-androstan-17-one + reduced [NADPH--hemoprotein reductase] + O2 = 3beta,7alpha-dihydroxy-5alpha-androstan-17-one + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A61820","3beta-hydroxy-5alpha-androstan-17-one + UDP-alpha-D-glucose = epiandrosterone 3-beta-D-glucoside + UDP + H(+)"]],"b":[["mapped/Epiandrosterone.yaml","Epiandrosterone"]]},{"id":"CHEBI:75937","l":"monooleoylglycerol","na":5,"nb":1,"a":[["RHEA%3A38455","1,2-di-(9Z-octadecenoyl)-glycerol + H2O = (9Z-octadecenoyl)-glycerol + (9Z)-octadecenoate + H(+)"],["RHEA%3A39935","1,2-di-(9Z-octadecenoyl)-sn-glycerol + H2O = (9Z-octadecenoyl)-glycerol + (9Z)-octadecenoate + H(+)"],["RHEA%3A39955","(9Z-octadecenoyl)-glycerol + H2O = glycerol + (9Z)-octadecenoate + H(+)"],["RHEA%3A50884","(9Z)-octadecenoyl-sn-glycero-3-phosphate + H2O = (9Z-octadecenoyl)-glycerol + phosphate"],["RHEA%3A47868","di-(9Z)-octadecenoylglycerol + H2O = (9Z-octadecenoyl)-glycerol + (9Z)-octadecenoate + H(+)"]],"b":[["mapped/Glycerol_Mono-oleate.yaml","Glycerol mono-oleate"]]},{"id":"CHEBI:11047","l":"(S)-3-hydroxybutyrate","na":4,"nb":1,"a":[["EC%3A1.1.99.24","hydroxyacid-oxoacid transhydrogenase"],["RHEA%3A65208","(3S)-3-hydroxybutanoyl-CoA + H2O = (S)-3-hydroxybutanoate + CoA + H(+)"],["RHEA%3A23048","(S)-3-hydroxybutanoate + 2-oxoglutarate = (R)-2-hydroxyglutarate + acetoacetate"],["RHEA%3A71871","(S)-3-hydroxybutanoate(out) + H(+)(out) = (S)-3-hydroxybutanoate(in) + H(+)(in)"]],"b":[["mapped/S-3-hydroxybutyrate.yaml","(S)-3-hydroxybutyrate"]]},{"id":"CHEBI:13997","l":"","na":4,"nb":1,"a":[["EC%3A2.8.3.11","citramalate CoA-transferase"],["RHEA%3A17621","citramalate + acetyl-CoA = (3S)-citramalyl-CoA + acetate"],["TCDB%3A2.A.24","The 2-Hydroxycarboxylate Transporter (2-HCT) Family"],["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"]],"b":[["mapped/Citramalate.yaml","Citramalate"]]},{"id":"CHEBI:15447","l":"","na":4,"nb":1,"a":[["EC%3A2.4.2.24","1,4-beta-D-xylan synthase"],["RHEA%3A15289","[(1->4)-beta-D-xylan](n) + UDP-alpha-D-xylose = [(1->4)-beta-D-xylan](n+1) + UDP + H(+)"],["MCSA%3A431","acetylxylan esterase"],["proteintraitsmech%3ABIOLIP_XYP","XYP-binding site"]],"b":[["mapped/Xylan_From_Beechwood.yaml","Xylan from Beechwood"]]},{"id":"CHEBI:15794","l":"","na":4,"nb":1,"a":[["EC%3A1.17.3.4","juglone 3-hydroxylase"],["RHEA%3A18745","2 juglone + O2 = 2 3,5-dihydroxy-1,4-naphthoquinone + 2 H(+)"],["RHEA%3A50748","juglone + H2O = naphthalene-1,2,4,8-tetrol"],["proteintraitsmech%3ABIOLIP_JUG","JUG-binding site"]],"b":[["mapped/Juglone.yaml","Juglone"]]},{"id":"CHEBI:15895","l":"","na":4,"nb":1,"a":[["EC%3A1.1.1.48","D-galactose 1-dehydrogenase"],["EC%3A3.1.1.25","1,4-lactonase"],["RHEA%3A44900","D-galactono-1,4-lactone + H2O = D-galactonate + H(+)"],["RHEA%3A21296","D-galactose + NAD(+) = D-galactono-1,4-lactone + NADH + H(+)"]],"b":[["mapped/D-galactonic_Acid_Lactone.yaml","D-galactonic Acid Lactone"]]},{"id":"CHEBI:16087","l":"","na":4,"nb":1,"a":[["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"],["TCDB%3A1.B.25","The Outer Membrane Porin (Opr) Family"],["MCSA%3A552","aconitate hydratase"],["MCSA%3A272","isocitrate lyase"]],"b":[["mapped/Isocitrate.yaml","Isocitrate"]]},{"id":"CHEBI:16096","l":"","na":4,"nb":1,"a":[["EC%3A2.1.1.118","columbamine O-methyltransferase"],["EC%3A2.1.1.147","corydaline synthase"],["RHEA%3A15373","columbamine + S-adenosyl-L-methionine = palmatine + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A14773","palmatine + S-adenosyl-L-methionine + 2 NADPH = corydaline + S-adenosyl-L-homocysteine + 2 NADP(+)"]],"b":[["mapped/Palmatine.yaml","Palmatine"]]},{"id":"CHEBI:16109","l":"propane-1,3-diol","na":4,"nb":1,"a":[["EC%3A1.1.1.202","1,3-propanediol dehydrogenase"],["RHEA%3A23188","propane-1,3-diol + NAD(+) = 3-hydroxypropanal + NADH + H(+)"],["RHEA%3A35599","propane-1,3-diol + NADP(+) = 3-hydroxypropanal + NADPH + H(+)"],["proteintraitsmech%3ABIOLIP_PDO","PDO-binding site"]],"b":[["mapped/13-Propanediol.yaml","1,3-Propanediol"]]},{"id":"CHEBI:16148","l":"heptadecane","na":4,"nb":1,"a":[["EC%3A4.1.99.5","aldehyde oxygenase (deformylating)"],["RHEA%3A77243","hnu + octadecanoate + H(+) = heptadecane + CO2"],["RHEA%3A30415","octadecanal + 2 NADPH + O2 + H(+) = heptadecane + formate + 2 NADP(+) + H2O"],["RHEA%3A83559","octadecanal + reduced [NADPH--hemoprotein reductase] + O2 = heptadecane + oxidized [NADPH--hemoprotein reductase] + CO2 + H2O + H(+)"]],"b":[["mapped/Heptadecane.yaml","Heptadecane"]]},{"id":"CHEBI:16226","l":"","na":4,"nb":1,"a":[["EC%3A2.4.1.210","limonoid glucosyltransferase"],["EC%3A3.1.1.36","limonin-D-ring-lactonase"],["RHEA%3A10896","limonin + 2 H2O = limonoate + 2 H(+)"],["RHEA%3A11256","limonin + UDP-alpha-D-glucose + H2O = limonin 17-beta-D-glucoside + UDP + 2 H(+)"]],"b":[["mapped/Limonin.yaml","Limonin"]]},{"id":"CHEBI:16238","l":"FAD","na":4,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16238","requires FAD"],["MCSA%3A968","aldehyde oxidase"],["MCSA%3A969","Phytoene desaturase (lycopene-forming)"],["proteintraitsmech%3ABIOLIP_FAD","FAD-binding site"]],"b":[["mapped/Fad.yaml","FAD"]]},{"id":"CHEBI:16354","l":"N-methylhydantoin","na":4,"nb":1,"a":[["EC%3A3.5.2.14","N-methylhydantoinase (ATP-hydrolyzing)"],["EC%3A3.5.4.21","creatinine deaminase"],["RHEA%3A12681","creatinine + H2O + H(+) = N-methylhydantoin + NH4(+)"],["RHEA%3A11720","N-methylhydantoin + ATP + 2 H2O = N-carbamoylsarcosine + ADP + phosphate + 2 H(+)"]],"b":[["mapped/N-methylhydantoin.yaml","N-methylhydantoin"]]},{"id":"CHEBI:16523","l":"","na":4,"nb":1,"a":[["GO%3A0070179","D-serine biosynthetic process"],["ARO%3A3002973","vanTm gene in vanL cluster"],["ARO%3A3002974","vanTr gene in vanL cluster"],["proteintraitsmech%3ABIOLIP_DSN","DSN-binding site"]],"b":[["mapped/D-Serine.yaml","D-Serine"]]},{"id":"CHEBI:17246","l":"","na":4,"nb":1,"a":[["EC%3A1.1.2.6","polyvinyl alcohol dehydrogenase (cytochrome)"],["EC%3A1.1.3.30","polyvinyl-alcohol oxidase"],["RHEA%3A20157","a polyvinyl alcohol + 2n Fe(III)-[cytochrome c] = an oxidized polyvinyl alcohol + 2n Fe(II)-[cytochrome c] + 2n H(+)"],["RHEA%3A21688","a polyvinyl alcohol + n O2 = an oxidized polyvinyl alcohol + n H2O2"]],"b":[["mapped/Polyvinyl_alcohol.yaml","Polyvinyl alcohol"]]},{"id":"CHEBI:17561","l":"L-cysteine","na":1,"nb":4,"a":[["proteintraitsmech%3ABIOLIP_CYS","CYS-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-cysteine.yaml","L-Cysteine"],["mapped/L-cysteine_Hcl_X_H2o.yaml","L-Cysteine HCl x H2O"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:17682","l":"","na":4,"nb":1,"a":[["EC%3A4.1.2.38","benzoin aldolase"],["RHEA%3A21460","benzoin = 2 benzaldehyde"],["RHEA%3A25960","benzoin + NADP(+) = benzil + NADPH + H(+)"],["MCSA%3A221","benzoin aldolase"]],"b":[["mapped/Benzoin.yaml","Benzoin"]]},{"id":"CHEBI:18154","l":"polysaccharide","na":4,"nb":1,"a":[["TCDB%3A9.B.97","The Acyltransferase-3/Putative Acetyl-CoA Transporter (AT3AT) Family"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A1.B.18","The Outer Membrane Auxiliary (OMA) Protein Family"]],"b":[["mapped/Polysaccharides.yaml","Polysaccharides"]]},{"id":"CHEBI:18268","l":"","na":4,"nb":1,"a":[["EC%3A1.1.1.20","glucuronolactone reductase"],["RHEA%3A30767","D-glucurono-3,6-lactone + H2O = D-glucuronate + H(+)"],["RHEA%3A30883","D-glucurono-3,6-lactone + NAD(+) + 2 H2O = D-glucarate + NADH + 3 H(+)"],["RHEA%3A18925","L-gulono-1,4-lactone + NADP(+) = D-glucurono-3,6-lactone + NADPH + H(+)"]],"b":[["mapped/D-Glucuronic_Acid_Gamma_Lactone.yaml","D-Glucuronic acid gamma lactone"]]},{"id":"CHEBI:18353","l":"","na":4,"nb":1,"a":[["EC%3A1.1.3.38","vanillyl-alcohol oxidase"],["RHEA%3A10036","4-hydroxy-3-methoxy-benzenemethanol + O2 = vanillin + H2O2"],["RHEA%3A76619","(6E)-8-methylnon-6-enoyl-CoA + 4-hydroxy-3-methoxy-benzenemethanol = capsiate + CoA"],["RHEA%3A76611","vanillin + NADPH + H(+) = 4-hydroxy-3-methoxy-benzenemethanol + NADP(+)"]],"b":[["mapped/Vanillyl_Alcohol.yaml","Vanillyl Alcohol"]]},{"id":"CHEBI:23681","l":"dibenzothiophene","na":4,"nb":1,"a":[["EC%3A1.14.14.21","dibenzothiophene monooxygenase"],["RHEA%3A49072","dibenzothiophene + 2 FMNH2 + 2 O2 = dibenzothiophene 5,5-dioxide + 2 FMN + 2 H2O + 2 H(+)"],["RHEA%3A49076","dibenzothiophene + FMNH2 + O2 = dibenzothiophene 5-oxide + FMN + H2O + H(+)"],["MCSA%3A973","DszC protein"]],"b":[["mapped/Dibenzothiophene.yaml","Dibenzothiophene"]]},{"id":"CHEBI:27605","l":"D-psicose","na":4,"nb":1,"a":[["EC%3A5.1.3.30","D-psicose 3-epimerase"],["EC%3A5.1.3.31","D-tagatose 3-epimerase"],["RHEA%3A42360","D-allulose = keto-D-fructose"],["proteintraitsmech%3ABIOLIP_PSJ","PSJ-binding site"]],"b":[["mapped/D-psicose.yaml","D-psicose"]]},{"id":"CHEBI:27856","l":"","na":4,"nb":1,"a":[["EC%3A3.5.1.4","amidase"],["RHEA%3A85603","acetamide = acetonitrile + H2O"],["RHEA%3A45048","acetamide + H2O = acetate + NH4(+)"],["RHEA%3A51648","N(6)-acetyl-L-lysyl-[protein] + O2 + H2O = acetamide + (S)-2-amino-6-oxohexanoyl-[protein] + H2O2"]],"b":[["mapped/Acetamide.yaml","Acetamide"]]},{"id":"CHEBI:27904","l":"D-erythrose","na":4,"nb":1,"a":[["RHEA%3A80075","D-erythrose + 3-hydroxypyruvate = (3S,4S,5R,6R)-3,4,5,6,7-pentahydroxy-2-oxoheptanoate"],["RHEA%3A66376","D-erythrose 4-phosphate + H2O = D-erythrose + phosphate"],["RHEA%3A53180","D-erythrose = D-erythrulose"],["RHEA%3A59928","erythritol + NADP(+) = D-erythrose + NADPH + H(+)"]],"b":[["mapped/D-erythrose.yaml","D-erythrose"]]},{"id":"CHEBI:28161","l":"","na":4,"nb":1,"a":[["RHEA%3A84895","4-O-methyl-alpha-D-glucuronosyl-(1->2)-beta-D-xylose + H2O = beta-D-xylose + 4-O-methyl-beta-D-glucuronate"],["RHEA%3A63336","alpha-D-xylose = beta-D-xylose"],["MCSA%3A548","endo-1,4-beta-xylanase (glycosyl hydrolase 10)"],["MCSA%3A432","endo-1,4-beta-xylanase (glycosyl hydrolase 11 family)"]],"b":[["mapped/Beta-D-xylose.yaml","Beta-D-xylose"]]},{"id":"CHEBI:30411","l":"cobalamin","na":4,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_30411","requires cobalamin"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A9.A.54","The Lysosomal Cobalamin (B12) Transporter (L-B12T) Family"],["TCDB%3A1.B.14","The Outer Membrane Receptor (OMR) Family"]],"b":[["mapped/Cobalamine.yaml","Cobalamine"]]},{"id":"CHEBI:30769","l":"citric acid","na":1,"nb":4,"a":[["proteintraitsmech%3ABIOLIP_CIT","CIT-binding site"]],"b":[["mapped/Citric_Acid.yaml","Citric acid"],["mapped/Citric_Acid_X_H2o.yaml","Citric acid x H2O"],["mapped/Citric_Acidh2o.yaml","Citric Acid•H2O"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:32139","l":"sodium hydrogencarbonate","na":1,"nb":4,"a":[["TCDB%3A2.A.31","The Anion Exchanger (AE) Family"]],"b":[["mapped/84_GL_NaHCO3_Solution.yaml","84 g/L NaHCO3 solution"],["mapped/Marine_Broth_2216.yaml","Marine broth 2216"],["mapped/Marine_agar_2216.yaml","Marine agar 2216"],["mapped/Nahco3.yaml","NaHCO3"]]},{"id":"CHEBI:34768","l":"furfural","na":4,"nb":1,"a":[["RHEA%3A77519","furfural + hydrogen cyanide = (2R)-2-(furan-2-yl)-2-hydroxyacetonitrile"],["RHEA%3A76667","furfural + NAD(+) + H2O = 2-furoate + NADH + 2 H(+)"],["RHEA%3A76671","furfural + NADP(+) + H2O = 2-furoate + NADPH + 2 H(+)"],["TCDB%3A1.C.113","The Hemolysin III (Hly III) Family"]],"b":[["mapped/2-Furfuraldehyde.yaml","2-Furfuraldehyde"]]},{"id":"CHEBI:3528","l":"","na":4,"nb":1,"a":[["RHEA%3A84439","D-cellotriose = beta-D-glucosyl-(1->4)-beta-D-glucosyl-(1->4)-D-mannopyranose"],["RHEA%3A59656","D-cellotriose + O2 = D-cellotriono-1,5-lactone + H2O2"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A4.A.3","The PTS Lactose-N,N'-Diacetylchitobiose-β-glucoside (Lac) Family"]],"b":[["mapped/Cellotriose.yaml","Cellotriose"]]},{"id":"CHEBI:4167)","l":"","na":4,"nb":1,"a":[["RHEA%3A22152","a ubiquinone + D-glucose = D-glucono-1,5-lactone + a ubiquinol"],["RHEA%3A20637","D-fructose + D-glucose = D-glucono-1,5-lactone + D-sorbitol"],["RHEA%3A17825","D-glucose + ATP = D-glucose 6-phosphate + ADP + H(+)"],["RHEA%3A68864","isomaltose + H2O = alpha-D-glucose + D-glucose"]],"b":[["mapped/Dextrose.yaml","Dextrose"]]},{"id":"CHEBI:45422","l":"","na":4,"nb":1,"a":[["RHEA%3A68112","propanamide + H2O = propanoate + NH4(+)"],["RHEA%3A85607","propanamide = propanonitrile + H2O"],["TCDB%3A1.B.94","The Pro-Pro-Glu Outer Membrane Porin (PPE) Family"],["proteintraitsmech%3ABIOLIP_ROP","ROP-binding site"]],"b":[["mapped/Propionamide.yaml","Propionamide"]]},{"id":"CHEBI:48942","l":"","na":4,"nb":1,"a":[["RHEA%3A76655","3-methylbutanal + NAD(+) + H2O = 3-methylbutanoate + NADH + 2 H(+)"],["RHEA%3A76651","3-methylbutanal + NADP(+) + H2O = 3-methylbutanoate + NADPH + 2 H(+)"],["RHEA%3A46184","3-methylbutanoate + ATP + CoA = 3-methylbutanoyl-CoA + AMP + diphosphate"],["RHEA%3A66984","3-methylbutanoyl-CoA + H2O = 3-methylbutanoate + CoA + H(+)"]],"b":[["mapped/Isovalerate.yaml","Isovalerate"]]},{"id":"CHEBI:48945","l":"","na":4,"nb":1,"a":[["RHEA%3A65456","2-methylbutan-1-ol + acetyl-CoA = 2-methylbutyl acetate + CoA"],["RHEA%3A65464","2-methylbutan-1-ol + butanoyl-CoA = 2-methylbutyl butanoate + CoA"],["RHEA%3A65532","2-methylbutan-1-ol + hexanoyl-CoA = 2-methylbutyl hexanoate + CoA"],["RHEA%3A84375","2-methylbutan-1-ol + NADP(+) = 2-methylbutanal + NADPH + H(+)"]],"b":[["mapped/2-methyl-1-butanol.yaml","2-methyl-1-butanol"]]},{"id":"CHEBI:5169","l":"fraxetin","na":4,"nb":1,"a":[["EC%3A1.14.11.60","scopoletin 8-hydroxylase"],["EC%3A1.14.14.164","fraxetin 5-hydroxylase"],["RHEA%3A57844","fraxetin + reduced [NADPH--hemoprotein reductase] + O2 = sideretin (reduced form) + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A57848","scopoletin + 2-oxoglutarate + O2 = fraxetin + succinate + CO2"]],"b":[["mapped/Fraxetin.yaml","Fraxetin"]]},{"id":"CHEBI:59899","l":"3-nitropropanoate","na":4,"nb":1,"a":[["EC%3A1.3.1.16","beta-nitroacrylate reductase"],["RHEA%3A81391","2-nitrobutanedioate + H(+) = 3-nitropropanoate + CO2"],["RHEA%3A81399","3-nitropropanoate + A + H2O = 3-oxopropanoate + nitrite + AH2 + H(+)"],["RHEA%3A23892","3-nitropropanoate + NADP(+) = 3-nitroacrylate + NADPH + H(+)"]],"b":[["mapped/3-nitropropanoate.yaml","3-nitropropanoate"]]},{"id":"CHEBI:6104","l":"","na":4,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/Kanamycin.yaml","Kanamycin"]]},{"id":"CHEBI:74904","l":"","na":4,"nb":1,"a":[["EC%3A2.8.3.24","(R)-2-hydroxy-4-methylpentanoate CoA-transferase"],["RHEA%3A66988","4-methylpentanoate + ATP + CoA = 4-methylpentanoyl-CoA + AMP + diphosphate"],["RHEA%3A49440","4-methylpentanoyl-CoA + (2R)-hydroxy-4-methylpentanoate = (R)-2-hydroxy-4-methylpentanoyl-CoA + 4-methylpentanoate"],["RHEA%3A55064","4-methylpentanoyl-CoA + H2O = 4-methylpentanoate + CoA + H(+)"]],"b":[["mapped/Isocaproate.yaml","Isocaproate"]]},{"id":"CHEBI:8984","l":"","na":4,"nb":1,"a":[["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"],["TCDB%3A1.B.1","The General Bacterial Porin (GBP) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/Sodium_Dodecyl_Sulfate.yaml","Sodium Dodecyl Sulfate"]]},{"id":"CHEBI:9533","l":"","na":4,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"],["TCDB%3A2.A.88","The Vitamin Uptake Transporter (VUT) Family"],["proteintraitsmech%3ABIOLIP_TPS","TPS-binding site"]],"b":[["mapped/Thiamine_monophosphate.yaml","thiamine monophosphate"]]},{"id":"CHEBI:125610","l":"N-acetyltyramine","na":3,"nb":1,"a":[["RHEA%3A67200","N-acetyltyramine + H2O = tyramine + acetate"],["RHEA%3A80971","N-acetyltyramine + reduced [NADPH--hemoprotein reductase] + O2 = N-acetyldopamine + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"],["RHEA%3A66136","tyramine + acetyl-CoA = N-acetyltyramine + CoA + H(+)"]],"b":[["mapped/N-acetyltyramine.yaml","N-acetyltyramine"]]},{"id":"CHEBI:136511","l":"manganese dioxide","na":3,"nb":1,"a":[["EC%3A1.16.3.3","manganese oxidase"],["RHEA%3A52240","2 Mn(2+) + O2 + 2 H2O = 2 MnO2 + 4 H(+)"],["RHEA%3A52248","4 Mn(3+) + O2 + 6 H2O = 4 MnO2 + 12 H(+)"]],"b":[["mapped/Mno2.yaml","MnO2"]]},{"id":"CHEBI:145933","l":"","na":3,"nb":1,"a":[["RHEA%3A51668","mevastatin + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = pravastatin lactone + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O"],["RHEA%3A62752","pravastatin lactone + H2O = pravastatin diol lactone + (S)-2-methylbutanoate + H(+)"],["RHEA%3A63048","pravastatin lactone + H2O = pravastatin + H(+)"]],"b":[["mapped/Pravastatin_Lactone.yaml","Pravastatin lactone"]]},{"id":"CHEBI:149531","l":"","na":3,"nb":1,"a":[["EC%3A1.1.3.50","C-glycoside oxidase"],["RHEA%3A75251","carminate + O2 = 3'-dehydrocarminate + H2O2"],["RHEA%3A63752","kermesate + UDP-alpha-D-glucose = carminate + UDP + 2 H(+)"]],"b":[["mapped/Carminate.yaml","Carminate"]]},{"id":"CHEBI:15603","l":"L-leucine","na":1,"nb":3,"a":[["proteintraitsmech%3ABIOLIP_LEU","LEU-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-leucine.yaml","L-Leucine"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:15929","l":"","na":3,"nb":1,"a":[["EC%3A2.1.1.141","jasmonate O-methyltransferase"],["RHEA%3A13349","jasmonate + S-adenosyl-L-methionine = methyl (-)-jasmonate + S-adenosyl-L-homocysteine"],["RHEA%3A55372","methyl (-)-jasmonate + H2O = jasmonate + methanol + H(+)"]],"b":[["mapped/Methyl_Jasmonate.yaml","methyl jasmonate"]]},{"id":"CHEBI:16019","l":"","na":3,"nb":1,"a":[["EC%3A3.1.7.1","prenyl-diphosphatase"],["RHEA%3A21496","dimethylallyl diphosphate + H2O = prenol + diphosphate"],["RHEA%3A58420","prenol + NADP(+) = 3-methyl-2-butenal + NADPH + H(+)"]],"b":[["mapped/3-methyl-2-butenol.yaml","3-methyl-2-butenol"]]},{"id":"CHEBI:16027","l":"","na":3,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_16027","requires adenosine 5'-monophosphate"],["MCSA%3A632","DNA nucleotidylexotransferase"],["proteintraitsmech%3ABIOLIP_AMP","AMP-binding site"]],"b":[["mapped/Adenosine_5-monophosphate.yaml","Adenosine 5'-monophosphate"]]},{"id":"CHEBI:16482","l":"naphthalene","na":3,"nb":1,"a":[["EC%3A1.14.12.12","naphthalene 1,2-dioxygenase"],["RHEA%3A19173","naphthalene + NADH + O2 + H(+) = (1R,2S)-1,2-dihydronaphthalene-1,2-diol + NAD(+)"],["MCSA%3A130","naphthalene 1,2-dioxygenase"]],"b":[["mapped/Naphthalene.yaml","Naphthalene"]]},{"id":"CHEBI:16602","l":"trichloroethene","na":3,"nb":1,"a":[["EC%3A1.21.99.5","tetrachloroethene reductive dehalogenase"],["RHEA%3A67992","trichloroethene + AH2 = (Z)-1,2-dichloroethene + chloride + A + H(+)"],["RHEA%3A20353","trichloroethene + chloride + A + H(+) = tetrachloroethene + AH2"]],"b":[["mapped/Trichloroethylene.yaml","Trichloroethylene"]]},{"id":"CHEBI:16828","l":"L-tryptophan","na":1,"nb":3,"a":[["proteintraitsmech%3ABIOLIP_TRP","TRP-binding site"]],"b":[["mapped/Day_AminoAcid20.yaml","Day_AminoAcid20"],["mapped/L-tryptophan.yaml","L-Tryptophan"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16885","l":"","na":3,"nb":1,"a":[["EC%3A2.4.1.99","sucrose:sucrose fructosyltransferase"],["RHEA%3A33783","1(F)-beta-D-fructosylsucrose + sucrose = 1,6-kestotetraose + beta-D-glucose"],["RHEA%3A23312","2 sucrose = 1(F)-beta-D-fructosylsucrose + D-glucose"]],"b":[["mapped/1-Kestose.yaml","1-Kestose"]]},{"id":"CHEBI:17097","l":"biphenyl","na":3,"nb":1,"a":[["EC%3A1.14.12.18","biphenyl 2,3-dioxygenase"],["RHEA%3A18165","biphenyl + NADH + O2 + H(+) = (2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diol + NAD(+)"],["proteintraitsmech%3ABIOLIP_BNL","BNL-binding site"]],"b":[["mapped/Biphenyl.yaml","Biphenyl"]]},{"id":"CHEBI:17484","l":"benzyl isothiocyanate","na":3,"nb":1,"a":[["EC%3A5.99.1.1","thiocyanate isomerase"],["RHEA%3A10004","benzyl isothiocyanate = benzyl thiocyanate"],["RHEA%3A69300","(Z)-phenyl-N-(sulfonatooxy)methanimidothioate = benzyl isothiocyanate + sulfate"]],"b":[["mapped/Benzyl_Isothiocyanate.yaml","Benzyl isothiocyanate"]]},{"id":"CHEBI:18367","l":"phosphate(3-)","na":3,"nb":1,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.29","The Mitochondrial Carrier (MC) Family"],["proteintraitsmech%3ABIOLIP_PO4","PO4-binding site"]],"b":[["mapped/Orthophosphate.yaml","Orthophosphate"]]},{"id":"CHEBI:2179","l":"","na":3,"nb":1,"a":[["RHEA%3A35007","D-fucose(in) = D-fucose(out)"],["RHEA%3A35011","D-fucose(in) + H(+)(in) = D-fucose(out) + H(+)(out)"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"]],"b":[["mapped/6-deoxy-d-galactose.yaml","6-deoxy-D-galactose"]]},{"id":"CHEBI:22908","l":"","na":3,"nb":1,"a":[["TCDB%3A2.A.31","The Anion Exchanger (AE) Family"],["TCDB%3A3.A.31","The Endosomal Sorting Complexes Required for Transport III (ESCRT-III) Family"],["TCDB%3A1.A.8","The Major Intrinsic Protein (MIP) Family"]],"b":[["mapped/Borate.yaml","Borate"]]},{"id":"CHEBI:2365","l":"(+)-abscisic acid","na":3,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.17","The Proton-dependent Oligopeptide Transporter (POT/PTR) Family"],["proteintraitsmech%3ABIOLIP_A8S","A8S-binding site"]],"b":[["mapped/Abscisic_Acid.yaml","Abscisic acid"]]},{"id":"CHEBI:27789","l":"1,2-dichloroethane","na":3,"nb":1,"a":[["EC%3A3.8.1.5","haloalkane dehalogenase"],["RHEA%3A25185","1,2-dichloroethane + H2O = 2-chloroethanol + chloride + H(+)"],["proteintraitsmech%3ABIOLIP_DCE","DCE-binding site"]],"b":[["mapped/2-dichloroethane.yaml","1,2-dichloroethane"]]},{"id":"CHEBI:27907","l":"","na":3,"nb":1,"a":[["EC%3A5.1.3.32","L-rhamnose mutarotase"],["RHEA%3A25584","alpha-L-rhamnose = beta-L-rhamnose"],["proteintraitsmech%3ABIOLIP_RAM","RAM-binding site"]],"b":[["mapped/Alpha-L-rhamnose.yaml","Alpha-L-rhamnose"]]},{"id":"CHEBI:28309","l":"","na":3,"nb":1,"a":[["RHEA%3A59632","D-xylobiose + O2 = D-xylobiono-1,5-lactone + H2O2"],["MCSA%3A548","endo-1,4-beta-xylanase (glycosyl hydrolase 10)"],["MCSA%3A432","endo-1,4-beta-xylanase (glycosyl hydrolase 11 family)"]],"b":[["mapped/Xylobiose.yaml","Xylobiose"]]},{"id":"CHEBI:28915","l":"fosfomycin","na":3,"nb":1,"a":[["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A1.B.5","The Pseudomonas OprP Porin (POP) Family"],["proteintraitsmech%3ABIOLIP_FCN","FCN-binding site"]],"b":[["mapped/Fosfomycin.yaml","Fosfomycin"]]},{"id":"CHEBI:29452","l":"","na":3,"nb":1,"a":[["EC%3A3.1.7.13","neryl diphosphate diphosphatase"],["RHEA%3A60672","nerol + NAD(+) = neral + NADH + H(+)"],["RHEA%3A65828","neryl diphosphate + H2O = nerol + diphosphate"]],"b":[["mapped/Nerol.yaml","Nerol"]]},{"id":"CHEBI:30719","l":"","na":3,"nb":1,"a":[["EC%3A4.2.1.35","(R)-2-methylmalate dehydratase"],["RHEA%3A42424","2-methylmaleate + H2O = (2R,3S)-3-methylmalate"],["RHEA%3A22332","(3R)-citramalate = 2-methylmaleate + H2O"]],"b":[["mapped/Citraconate.yaml","Citraconate"]]},{"id":"CHEBI:30803","l":"isophthalate(2-)","na":3,"nb":1,"a":[["EC%3A6.2.1.58","isophthalate--CoA ligase"],["RHEA%3A61636","isophthalate + ATP + CoA = isophthalyl-CoA + AMP + diphosphate"],["TCDB%3A2.A.80","The Tricarboxylate Transporter (TTT) Family"]],"b":[["mapped/Isophthalate.yaml","Isophthalate"]]},{"id":"CHEBI:30911","l":"glucitol","na":3,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A4.A.4","The PTS Glucitol (Gut) Family"]],"b":[["mapped/Sorbitol.yaml","Sorbitol"]]},{"id":"CHEBI:31128","l":"","na":3,"nb":1,"a":[["EC%3A1.14.13.84","4-hydroxyacetophenone monooxygenase"],["RHEA%3A47384","4-acetoxyphenol + H2O = hydroquinone + acetate + H(+)"],["RHEA%3A22916","4'-hydroxyacetophenone + NADPH + O2 + H(+) = 4-acetoxyphenol + NADP(+) + H2O"]],"b":[["mapped/4-acetoxyphenol.yaml","4-acetoxyphenol"]]},{"id":"CHEBI:32816","l":"pyruvic acid","na":3,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_32816","requires pyruvic acid"],["MCSA%3A449","cystathionine beta-lyase"],["proteintraitsmech%3ABIOLIP_PYR","PYR-binding site"]],"b":[["mapped/Pyruvic_Acid.yaml","Pyruvic acid"]]},{"id":"CHEBI:37054","l":"3-hydroxybutyrate","na":1,"nb":3,"a":[["RHEA%3A81351","3-hydroxybutanoate(in) = 3-hydroxybutanoate(out)"]],"b":[["mapped/3-hydroxybutyrate.yaml","3-hydroxybutyrate"],["mapped/R-3-hydroxybutyrate.yaml","(R)-3-hydroxybutyrate"],["mapped/S-3-hydroxybutyrate.yaml","(S)-3-hydroxybutyrate"]]},{"id":"CHEBI:40968","l":"astaxanthin","na":3,"nb":1,"a":[["EC%3A1.14.99.64","zeaxanthin 4-ketolase"],["RHEA%3A56772","all-trans-adonixanthin + 2 AH2 + 2 O2 = all-trans-(3S,3'S)-astaxanthin + 2 A + 3 H2O"],["proteintraitsmech%3ABIOLIP_AXT","AXT-binding site"]],"b":[["mapped/Astaxanthin.yaml","Astaxanthin"]]},{"id":"CHEBI:41189","l":"","na":1,"nb":3,"a":[["proteintraitsmech%3ABIOLIP_BU1","BU1-binding site"]],"b":[["mapped/14-Butanediol.yaml","1,4-Butanediol"],["mapped/Butane-14-diol.yaml","Butane-1,4-diol"],["unmapped/4-diol.yaml","4-diol"]]},{"id":"CHEBI:412516","l":"5-hydroxymethylfurfural","na":3,"nb":1,"a":[["EC%3A1.1.3.47","5-(hydroxymethyl)furfural oxidase"],["RHEA%3A32683","5-hydroxymethylfurfural + 3 O2 + 2 H2O = 2,5-dicarboxyfuran + 3 H2O2 + 2 H(+)"],["RHEA%3A43504","5-hydroxymethylfurfural + O2 = 2,5-diformylfuran + H2O2"]],"b":[["mapped/5-Hydroxymethylfurfural.yaml","5-Hydroxymethylfurfural"]]},{"id":"CHEBI:43968","l":"meropenem","na":3,"nb":1,"a":[["TCDB%3A1.B.1","The General Bacterial Porin (GBP) Family"],["TCDB%3A1.B.25","The Outer Membrane Porin (Opr) Family"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/Meropenem.yaml","Meropenem"]]},{"id":"CHEBI:45863","l":"","na":3,"nb":1,"a":[["EC%3A2.3.1.321","3'-N-debenzoyltaxol N-benzoyltransferase"],["RHEA%3A33687","3'-N-debenzoyltaxol + benzoyl-CoA = paclitaxel + CoA + H(+)"],["proteintraitsmech%3ABIOLIP_TA1","TA1-binding site"]],"b":[["mapped/Paclitaxel.yaml","Paclitaxel"]]},{"id":"CHEBI:4629","l":"diosgenin","na":3,"nb":1,"a":[["EC%3A3.2.1.189","dioscin glycosidase (diosgenin-forming)"],["RHEA%3A36827","dioscin + 3 H2O = diosgenin + 2 L-rhamnopyranose + D-glucose"],["RHEA%3A61888","diosgenin + UDP-alpha-D-glucose = diosgenin 3-O-beta-D-glucoside + UDP + H(+)"]],"b":[["mapped/Diosgenin.yaml","Diosgenin"]]},{"id":"CHEBI:5199","l":"Fusaric acid","na":3,"nb":1,"a":[["TCDB%3A2.A.85","The Aromatic Acid Exporter (ArAE) Family"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A1.B.17","The Outer Membrane Factor (OMF) Family"]],"b":[["mapped/Fusaric_Acid.yaml","Fusaric 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lactose"]],"b":[["mapped/Lacto-N-neotetraose.yaml","Lacto-N-neotetraose"]]},{"id":"CHEBI:64243","l":"","na":1,"nb":3,"a":[["TCDB%3A9.A.14","The G-protein-coupled receptor (GPCR) Family"]],"b":[["mapped/Na-glutamate.yaml","Na-glutamate"],["mapped/Sodium_Glutamate_Monohydrate.yaml","Sodium glutamate monohydrate"],["mapped/Sodium_L-glutamate.yaml","Sodium L-glutamate"]]},{"id":"CHEBI:6472","l":"lincomycin","na":3,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["proteintraitsmech%3ABIOLIP_3QB","3QB-binding site"]],"b":[["mapped/Lincomycin.yaml","Lincomycin"]]},{"id":"CHEBI:64755","l":"''EDTA(2-","na":3,"nb":1,"a":[["EC%3A1.14.14.33","ethylenediaminetetraacetate monooxygenase"],["RHEA%3A40987","EDTA + 2 FMNH2 + 2 O2 = ethylenediaminediacetate + 2 FMN + 2 glyoxylate + 2 H2O + 3 H(+)"],["RHEA%3A49760","EDTA + FMNH2 + O2 = ethylenediaminetriacetate + FMN + glyoxylate + H2O + 2 H(+)"]],"b":[["mapped/Edta.yaml","EDTA"]]},{"id":"CHEBI:67135","l":"2-nitroimidazole","na":3,"nb":1,"a":[["EC%3A3.5.99.9","2-nitroimidazole nitrohydrolase"],["RHEA%3A34271","2-nitroimidazole + H2O = 1,3-dihydro-2H-imidazol-2-one + nitrite + H(+)"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"]],"b":[["mapped/Azomycin.yaml","Azomycin"]]},{"id":"CHEBI:67410","l":"","na":3,"nb":1,"a":[["RHEA%3A62588","2-hydroxy-2-(4-hydroxyphenyl)acetate + H(+) = 4-hydroxybenzyl alcohol + CO2"],["RHEA%3A56980","4-hydroxybenzyl alcohol + 2 oxidized [azurin] = 2 reduced [azurin] + 4-hydroxybenzaldehyde + 2 H(+)"],["RHEA%3A56976","4-methylphenol + 2 oxidized [azurin] + H2O = 4-hydroxybenzyl alcohol + 2 reduced [azurin] + 2 H(+)"]],"b":[["mapped/P-Hydroxybenzyl_alcohol.yaml","p-Hydroxybenzyl alcohol"]]},{"id":"CHEBI:72813","l":"exopolysaccharide","na":3,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide 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S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A32103","trans-resveratrol + 2 S-adenosyl-L-methionine = pterostilbene + 2 S-adenosyl-L-homocysteine + 2 H(+)"]],"b":[["mapped/Pterostilbene.yaml","Pterostilbene"]]},{"id":"CHEBI:9215","l":"spectinomycin","na":3,"nb":1,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"],["proteintraitsmech%3ABIOLIP_SCM","SCM-binding site"]],"b":[["mapped/Spectinomycin.yaml","Spectinomycin"]]},{"id":"CHEBI:100246","l":"norfloxacin","na":2,"nb":1,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"]],"b":[["mapped/Norfloxacin.yaml","Norfloxacin"]]},{"id":"CHEBI:10357","l":"","na":2,"nb":1,"a":[["EC%3A4.2.3.57","(-)-beta-caryophyllene synthase"],["RHEA%3A28294","(2E,6E)-farnesyl diphosphate = (-)-(E)-beta-caryophyllene + 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3-(4-deoxy-beta-D-gluc-4-enuronosyl)-N-acetyl-D-glucosamine + H2O"]],"b":[["mapped/Distilled_Water.yaml","Distilled water"]]},{"id":"CHEBI:15420","l":"","na":2,"nb":1,"a":[["EC%3A1.1.1.144","perillyl-alcohol dehydrogenase"],["RHEA%3A10664","perillyl alcohol + NAD(+) = perillyl aldehyde + NADH + H(+)"]],"b":[["mapped/Perillyl_Alcohol.yaml","Perillyl Alcohol"]]},{"id":"CHEBI:15748","l":"D-glucuronate","na":2,"nb":1,"a":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A1.B.25","The Outer Membrane Porin (Opr) Family"]],"b":[["mapped/D-glucuronate.yaml","D-glucuronate"]]},{"id":"CHEBI:15767","l":"","na":2,"nb":1,"a":[["EC%3A4.5.1.3","dichloromethane dehalogenase"],["RHEA%3A15397","dichloromethane + H2O = formaldehyde + 2 chloride + 2 H(+)"]],"b":[["mapped/Methylene_Chloride.yaml","methylene chloride"]]},{"id":"CHEBI:15824","l":"D-fructose","na":2,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A4.A.1","The PTS Glucose-Glucoside (Glc) 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+ H(+)"]],"b":[["mapped/Trithionate.yaml","Trithionate"]]},{"id":"CHEBI:16011","l":"","na":2,"nb":1,"a":[["EC%3A3.1.1.60","bis(2-ethylhexyl)phthalate esterase"],["RHEA%3A15529","bis(2-ethylhexyl)phthalate + H2O = 2-ethylhexan-1-ol + 2-ethylhexyl phthalate + H(+)"]],"b":[["mapped/2-Ethylhexanol.yaml","2-Ethylhexanol"]]},{"id":"CHEBI:16077","l":"","na":2,"nb":1,"a":[["TCDB%3A1.B.96","The Chloroplast Outer Envelope Porin 40 (OEP40) Family"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"]],"b":[["mapped/Glucose_1-phosphate.yaml","Glucose 1-phosphate"]]},{"id":"CHEBI:16119","l":"shikimic acid","na":1,"nb":2,"a":[["proteintraitsmech%3ABIOLIP_SKM","SKM-binding site"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/Shikimic_Acid.yaml","Shikimic Acid"]]},{"id":"CHEBI:16133","l":"not class CHEBI:23495","na":2,"nb":1,"a":[["EC%3A1.1.1.163","cyclopentanol dehydrogenase"],["RHEA%3A11728","cyclopentanol + NAD(+) = cyclopentanone + NADH + H(+)"]],"b":[["mapped/CyclopentanolCO2.yaml","Cyclopentanol+CO2"]]},{"id":"CHEBI:16136","l":"hydrogen sulfide","na":1,"nb":2,"a":[["MCSA%3A398","sulfite reductase (NADPH)"]],"b":[["mapped/Hydrogen_Sulfide.yaml","Hydrogen sulfide"],["mapped/Sulfur.yaml","Sulfur"]]},{"id":"CHEBI:16196","l":"oleic acid","na":2,"nb":1,"a":[["TCDB%3A9.A.76","The Omega3 Fatty Acid Desaturase 3/Putative Transporter (FAD3) Family"],["proteintraitsmech%3ABIOLIP_OLA","OLA-binding site"]],"b":[["mapped/Oleic_Acid.yaml","Oleic acid"]]},{"id":"CHEBI:16324","l":"","na":2,"nb":1,"a":[["EC%3A1.10.3.6","rifamycin-B oxidase"],["RHEA%3A11292","rifamycin B + O2 + 2 H(+) = rifamycin O + H2O2"]],"b":[["mapped/Rifamycin_O.yaml","Rifamycin O"]]},{"id":"CHEBI:16349","l":"L-citrulline","na":1,"nb":2,"a":[["proteintraitsmech%3ABIOLIP_CIR","CIR-binding site"]],"b":[["mapped/L-citrulline.yaml","L-Citrulline"],["mapped/NLDM_metabolites.yaml","NLDM_metabolites"]]},{"id":"CHEBI:16410","l":"pyridoxamine","na":2,"nb":1,"a":[["GO%3A0070281","pyridoxamine binding"],["proteintraitsmech%3ABIOLIP_PXM","PXM-binding site"]],"b":[["mapped/Pyridoxamine.yaml","Pyridoxamine"]]},{"id":"CHEBI:16489","l":"","na":2,"nb":1,"a":[["EC%3A3.5.4.11","pterin deaminase"],["RHEA%3A11904","2-amino-4-hydroxypteridine + H2O + H(+) = 2,4-dihydroxypteridine + NH4(+)"]],"b":[["mapped/Lumazine.yaml","Lumazine"]]},{"id":"CHEBI:16540","l":"","na":2,"nb":1,"a":[["EC%3A1.14.99.26","2-hydroxypyridine 5-monooxygenase"],["RHEA%3A16973","2-hydroxypyridine + AH2 + O2 = 2,5-dihydroxypyridine + A + H2O"]],"b":[["mapped/2-Hydroxypyridine.yaml","2-Hydroxypyridine"]]},{"id":"CHEBI:16545","l":"","na":2,"nb":1,"a":[["EC%3A1.14.13.16","cyclopentanone monooxygenase"],["RHEA%3A15737","cyclopentanone + NADPH + O2 + H(+) = 5-valerolactone + NADP(+) + H2O"]],"b":[["mapped/Valerolactone.yaml","Valerolactone"]]},{"id":"CHEBI:16610","l":"spermidine","na":1,"nb":2,"a":[["proteintraitsmech%3ABIOLIP_SPD","SPD-binding site"]],"b":[["mapped/NLDM_metabolites.yaml","NLDM_metabolites"],["mapped/spermidine.yaml","spermidine"]]},{"id":"CHEBI:16716","l":"","na":2,"nb":1,"a":[["EC%3A1.14.12.3","benzene 1,2-dioxygenase"],["RHEA%3A13813","benzene + NADH + O2 + H(+) = cis-1,2-dihydrobenzene-1,2-diol + NAD(+)"]],"b":[["mapped/Benzene.yaml","Benzene"]]},{"id":"CHEBI:16991","l":"deoxyribonucleic acid","na":1,"nb":2,"a":[["proteintraitsmech%3ABIOLIP_DNA","DNA-binding site"]],"b":[["mapped/Deoxyribonucleic_Acid_From_Herring_Sperm.yaml","Deoxyribonucleic acid from herring sperm"],["mapped/Fish-sperm_Dna.yaml","Fish-Sperm DNA"]]},{"id":"CHEBI:16995","l":"oxalic acid","na":2,"nb":1,"a":[["TCDB%3A2.A.53","The Sulfate Permease (SulP) Family"],["proteintraitsmech%3ABIOLIP_OXD","OXD-binding site"]],"b":[["mapped/Oxalic_Acid.yaml","Oxalic Acid"]]},{"id":"CHEBI:17012","l":"N-acetylneuraminic acid","na":2,"nb":1,"a":[["MCSA%3A835","exo-alpha-sialidase (GH33 Family)"],["MCSA%3A828","exo-alpha-sialidase (GH34 Family)"]],"b":[["mapped/N-acetylneuraminic_Acid.yaml","N-acetylneuraminic acid"]]},{"id":"CHEBI:17019","l":"(R)-amygdalin","na":2,"nb":1,"a":[["EC%3A3.2.1.117","amygdalin beta-glucosidase"],["RHEA%3A14177","(R)-amygdalin + H2O = (R)-prunasin + D-glucose"]],"b":[["mapped/%28R%29-amygdalin.yaml","(R)-amygdalin"]]},{"id":"CHEBI:17154)","l":"","na":2,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_17154","requires nicotinamide"],["RHEA%3A14545","nicotinamide + H2O = nicotinate + NH4(+)"]],"b":[["mapped/Nicotinamide.yaml","Nicotinamide"]]},{"id":"CHEBI:17300","l":"tetrachloroethene","na":2,"nb":1,"a":[["EC%3A1.21.99.5","tetrachloroethene reductive dehalogenase"],["RHEA%3A20353","trichloroethene + chloride + A + H(+) = tetrachloroethene + 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Resistance-Nodulation-Cell Division (RND) Superfamily"]],"b":[["mapped/Piperacillin.yaml","Piperacillin"]]},{"id":"CHEBI:85274","l":"","na":1,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"]],"b":[["mapped/Pristinamycin.yaml","Pristinamycin"]]},{"id":"CHEBI:86471","l":"pyrite","na":1,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"]],"b":[["mapped/Pyrite.yaml","Pyrite"]]},{"id":"CHEBI:8673","l":"pyrimethamine","na":1,"nb":1,"a":[["proteintraitsmech%3ABIOLIP_CP6","CP6-binding site"]],"b":[["mapped/Pyrimethamine.yaml","Pyrimethamine"]]},{"id":"CHEBI:88937","l":"","na":1,"nb":1,"a":[["proteintraitsmech%3ABIOLIP_HHS","HHS-binding site"]],"b":[["mapped/Pterin-6-Carboxylic_Acid.yaml","Pterin-6-Carboxylic Acid"]]},{"id":"CHEBI:90065","l":"3-fucosyllactose","na":1,"nb":1,"a":[["RHEA%3A62888","lactose + GDP-beta-L-fucose = beta-D-galactosyl-(1->4)-[alpha-L-fucosyl-(1->3)]-D-glucose + GDP + H(+)"]],"b":[["mapped/3-fucosyllactose.yaml","3'-fucosyllactose"]]},{"id":"CHEBI:9009","l":"Salidroside","na":1,"nb":1,"a":[["RHEA%3A84635","4-tyrosol + UDP-alpha-D-glucose = salidroside + UDP + H(+)"]],"b":[["mapped/Salidroside.yaml","Salidroside"]]},{"id":"CHEBI:90146","l":"","na":1,"nb":1,"a":[["proteintraitsmech%3ABIOLIP_C3G","C3G-binding site"]],"b":[["mapped/4-nitrophenyl_Beta-D-glucuronide.yaml","4-nitrophenyl Beta-D-glucuronide"]]},{"id":"CHEBI:91122","l":"","na":1,"nb":1,"a":[["proteintraitsmech%3ABIOLIP_PNG","PNG-binding site"]],"b":[["mapped/4-nitrophenyl_Alpha-D-glucopyranoside.yaml","4-nitrophenyl Alpha-D-glucopyranoside"]]},{"id":"CHEBI:9150","l":"","na":1,"nb":1,"a":[["TCDB%3A2.A.28","The Bile Acid:Na+ Symporter (BASS) Family"]],"b":[["mapped/Simvastatin.yaml","Simvastatin"]]},{"id":"CHEBI:9747","l":"Triptolide","na":1,"nb":1,"a":[["proteintraitsmech%3ABIOLIP_TLI","TLI-binding site"]],"b":[["mapped/Triptolide.yaml","Triptolide"]]},{"id":"UBERON:0000955","l":"brain","na":1,"nb":1,"a":[["GO%3A0007420","brain development"]],"b":[["unmapped/Calf_Brains.yaml","Calf brains"]]}]} \ No newline at end of file diff --git a/assets/fleet/edges/ProteinTraitsMech--NaturalProductMech.json b/assets/fleet/edges/ProteinTraitsMech--NaturalProductMech.json index e55d092..34a309b 100644 --- a/assets/fleet/edges/ProteinTraitsMech--NaturalProductMech.json +++ b/assets/fleet/edges/ProteinTraitsMech--NaturalProductMech.json @@ -1 +1 @@ -{"a":"ProteinTraitsMech","b":"NaturalProductMech","base":{"ProteinTraitsMech":"https://culturebotai.github.io/proteintraitsmech/browse.html#record=","NaturalProductMech":"https://github.com/CultureBotAI/NaturalProductMech/blob/main/data/natural_products/"},"n":890,"by":{"NCBITaxon":487,"UniProt":156,"CHEBI":148,"DOI":96,"RHEA":3},"terms":[{"id":"NCBITaxon:562","l":"Escherichia coli","na":145,"nb":24,"a":[["IDPO%3A0000033","flexible linker"],["IDPO%3A0000014","order to disorder"],["IDPO%3A0000004","pre-molten globule"],["IDPO%3A0000013","pre-molten globule to order"],["Pfam%3APF13304","AAA domain, putative AbiEii toxin, Type IV TA system"],["Pfam%3APF13427","Aminoglycoside adenylyltransferase, C-terminal domain"]],"b":[["alkaloids/biotin.yaml","biotin"],["alkaloids/prodigiosin.yaml","prodigiosin"],["alkaloids/violacein-2.yaml","violacein"],["alkaloids/violacein.yaml","violacein"],["alkaloids/yersiniabactin-2.yaml","yersiniabactin"],["amino_acids_and_peptides/aerobactin.yaml","aerobactin"]]},{"id":"NCBITaxon:100226","l":"Streptomyces coelicolor A3(2)","na":32,"nb":23,"a":[["Pfam%3APF25848","Rodlin protein"],["Pfam%3APF13420","Acetyltransferase (GNAT) domain"],["Pfam%3APF21086","ACT domain"],["Pfam%3APF03756","A-factor biosynthesis hotdog domain"],["Pfam%3APF26381","BREX System ATPase PglY protein 5th domain"],["Pfam%3APF26382","BREX System ATPase PglY protein 6th domain"]],"b":[["alkaloids/5-dimethylallylindole-3-acetonitrile.yaml","5-dimethylallylindole-3-acetonitrile"],["alkaloids/melanin.yaml","melanin"],["alkaloids/undecylprodigiosin.yaml","undecylprodigiosin"],["amino_acids_and_peptides/coelichelin.yaml","coelichelin"],["amino_acids_and_peptides/desferrioxamine-e.yaml","desferrioxamine E"],["amino_acids_and_peptides/sapb.yaml","SapB"]]},{"id":"NCBITaxon:227321","l":"Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)","na":44,"nb":22,"a":[["IDPO%3A0000032","flexible N-terminal tail"],["Pfam%3APF05270","Alpha-L-arabinofuranosidase B (ABFB) domain"],["Pfam%3APF07792","Docking domain of Afi1 for Arf3 in vesicle trafficking"],["Pfam%3APF09206","Alpha-L-arabinofuranosidase B, catalytic"],["Pfam%3APF27751","ATEG_07667 C-terminal domain"],["Pfam%3APF20238","Copper acquisition factor BIM1-like"]],"b":[["alkaloids/aspernidine-a.yaml","aspernidine A"],["alkaloids/aspyridone-a.yaml","aspyridone 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fluorescens","na":16,"nb":27,"a":[["Pfam%3APF16822","SGNH hydrolase-like domain, acetyltransferase AlgX"],["Pfam%3APF19298","3-Ketosteroid 9alpha-hydroxylase C-terminal domain"],["Pfam%3APF11182","Alginate O-acetyl transferase AlgF"],["PROSITE%3APS00314","Bacterial ice-nucleation proteins octamer repeat"],["Pfam%3APF27129","Functional amyloid protein FapB/FapC family"],["Pfam%3APF00818","Ice nucleation protein repeat (2 copies)"]],"b":[["alkaloids/brabantamide-a.yaml","brabantamide A"],["alkaloids/enantio-pyochelin.yaml","enantio-pyochelin"],["alkaloids/pseudomonine.yaml","pseudomonine"],["alkaloids/pyoluteorin.yaml","pyoluteorin"],["alkaloids/pyreudione-c.yaml","pyreudione C"],["alkaloids/quinolobactin.yaml","quinolobactin"]]},{"id":"UniProt:O96028","l":"","na":27,"nb":16,"a":[["ComplexPortal%3ACPX-16414","-"],["CDD%3Acd20162","PWWP_NSD2_rpt1"],["CDD%3Acd21991","HMG-box_NSD2"],["CDD%3Acd15648","PHD1_NSD1_2"],["CDD%3Acd15651","PHD2_NSD2"],["CDD%3Acd15654","PHD3_NSD2"]],"b":[["alkaloids/cytochalasin-e.yaml","cytochalasin E"],["alkaloids/fumiquinazoline-d.yaml","fumiquinazoline D"],["amino_acids_and_peptides/epoxomicin.yaml","epoxomicin"],["amino_acids_and_peptides/tubulysin-a.yaml","tubulysin A"],["carbohydrates/puromycin.yaml","puromycin"],["fatty_acids/desferrioxamine-b.yaml","desferrioxamine B"]]},{"id":"NCBITaxon:1423","l":"Bacillus subtilis","na":15,"nb":16,"a":[["Pfam%3APF13535","ATP-grasp domain"],["Pfam%3APF17728","BsuBI/PstI restriction endonuclease HTH domain"],["Pfam%3APF06616","BsuBI/PstI restriction endonuclease domain"],["Pfam%3APF14562","Restriction endonuclease BglI"],["Pfam%3APF09195","Restriction endonuclease BglII/BglIII"],["Pfam%3APF09208","Restriction endonuclease MspI"]],"b":[["amino_acids_and_peptides/bacillomycin-d.yaml","bacillomycin D"],["amino_acids_and_peptides/bacilysin-2.yaml","bacilysin"],["amino_acids_and_peptides/bacilysin.yaml","bacilysin"],["amino_acids_and_peptides/ericin-s.yaml","ericin S"],["amino_acids_and_peptides/iturin.yaml","iturin"],["amino_acids_and_peptides/mersacidin.yaml","mersacidin"]]},{"id":"NCBITaxon:330879","l":"Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)","na":34,"nb":14,"a":[["Pfam%3APF22624","4'-phosphopantetheinyl transferase, N-terminal"],["Pfam%3APF13523","Acetyltransferase (GNAT) domain"],["Pfam%3APF28338","AclK C-terminal domain"],["Pfam%3APF23297","Highly reducing polyketide synthase sdgA, C-terminal ACP domain"],["Pfam%3APF11001","YDR124W-like, helical bundle domain"],["Pfam%3APF25312","Allergen Asp f 4-like domain"]],"b":[["alkaloids/fumigaclavine-c.yaml","fumigaclavine 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A"],["alkaloids/staurosporine-2.yaml","staurosporine"],["amino_acids_and_peptides/citrulline.yaml","citrulline"],["amino_acids_and_peptides/lugdunin.yaml","lugdunin"]]},{"id":"NCBITaxon:56","l":"Sorangium cellulosum","na":13,"nb":25,"a":[["TED%3AAF-A0A150SQB4-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A150SQB4-F1-model_v4_TED01"],["TED%3AAF-A0A2L0EP96-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2L0EP96-F1-model_v4_TED01"],["TED%3AAF-A0A2L0F1G5-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2L0F1G5-F1-model_v4_TED01"],["TED%3AAF-A0A2L0F230-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2L0F230-F1-model_v4_TED01"],["TED%3AAF-A0A4P2R1W3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4P2R1W3-F1-model_v4_TED01"],["TED%3AAF-A0A150P579-F1-model_v4_TED02","TED novel fold AF-A0A150P579-F1-model_v4_TED02"]],"b":[["amino_acids_and_peptides/microsclerodermin-m.yaml","microsclerodermin M"],["polyketides/ambruticin.yaml","ambruticin"],["polyketides/chivosazol.yaml","chivosazol"],["polyketides/chlorotonil-a.yaml","chlorotonil A"],["polyketides/disorazol-a.yaml","disorazol A"],["polyketides/etnangien.yaml","etnangien"]]},{"id":"NCBITaxon:287","l":"Pseudomonas aeruginosa","na":19,"nb":12,"a":[["Pfam%3APF02522","Aminoglycoside 3-N-acetyltransferase"],["Pfam%3APF18173","Bacterial HORMA domain 2"],["Pfam%3APF13354","Beta-lactamase enzyme family"],["Pfam%3APF26107","BrxR transcriptional regulator, C-terminal dimerization domain"],["Pfam%3APF27322","Cap8 HORMA domain"],["Pfam%3APF01526","Tn3 transposase DDE domain"]],"b":[["alkaloids/2-heptyl-3-hydroxy-4-quinolone.yaml","2-heptyl-3-hydroxy-4-quinolone"],["alkaloids/2-heptylquinolin-4-1h-one.yaml","2-heptylquinolin-4(1H)-one"],["alkaloids/4-hydroxy-2-quinolone.yaml","4-hydroxy-2-quinolone"],["alkaloids/azetidomonamide-a.yaml","azetidomonamide A"],["alkaloids/azetidomonamide-b.yaml","azetidomonamide B"],["alkaloids/pyochelin-i.yaml","pyochelin I"]]},{"id":"NCBITaxon:341663","l":"","na":11,"nb":17,"a":[["Pfam%3APF27751","ATEG_07667 C-terminal domain"],["Pfam%3APF28386","BfoA family C-terminal domain"],["Pfam%3APF03879","Cgr1 family"],["Pfam%3APF22621","CurL-like, PKS C-terminal"],["Pfam%3APF18558","Methyltransferase, Helix-turn-helix domain"],["Pfam%3APF06355","Aegerolysin"]],"b":[["alkaloids/asterriquinone-ct5.yaml","asterriquinone CT5"],["alkaloids/dihydroisoflavipucine.yaml","dihydroisoflavipucine"],["alkaloids/isoflavipucine.yaml","isoflavipucine"],["polyketides/citreoviridin.yaml","citreoviridin"],["polyketides/geodin.yaml","geodin"],["polyketides/terreic-acid.yaml","terreic acid"]]},{"id":"NCBITaxon:3702","l":"Arabidopsis thaliana","na":18772,"nb":10,"a":[["EC%3A1.1.99.-","With other acceptors"],["EC%3A1.1.-.-","Acting on the CH-OH group of donors"],["EC%3A1.11.1.-","Peroxidases"],["EC%3A1.14.11.-","With 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors"],["EC%3A1.14.13.-","With NADH or NADPH as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.14.-","With reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen"]],"b":[["amino_acids_and_peptides/citrulline.yaml","citrulline"],["fatty_acids/itaconic-acid.yaml","itaconic acid"],["terpenoids/ent-quiannulatene.yaml","(-)-ent-quiannulatene"],["terpenoids/euphol.yaml","euphol"],["terpenoids/marneral.yaml","marneral"],["terpenoids/thaliandiol.yaml","thaliandiol"]]},{"id":"NCBITaxon:208964","l":"Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)","na":162,"nb":10,"a":[["Pfam%3APF25323","PilS-like transmembrane domain"],["Pfam%3APF06750","Bacterial Peptidase A24 N-terminal domain"],["Pfam%3APF12679","ABC-2 family transporter protein"],["Pfam%3APF28403","Aconitase X second domain"],["Pfam%3APF28406","Aconitase X third domain"],["Pfam%3APF04412","Aconitase X first domain"]],"b":[["alkaloids/2-heptyl-3-hydroxy-4-quinolone.yaml","2-heptyl-3-hydroxy-4-quinolone"],["alkaloids/2-heptylquinolin-4-1h-one.yaml","2-heptylquinolin-4(1H)-one"],["alkaloids/4-hydroxy-2-quinolone.yaml","4-hydroxy-2-quinolone"],["alkaloids/azetidomonamide-a.yaml","azetidomonamide A"],["alkaloids/azetidomonamide-b.yaml","azetidomonamide B"],["alkaloids/pyochelin-i.yaml","pyochelin I"]]},{"id":"NCBITaxon:510516","l":"Aspergillus oryzae (strain ATCC 42149 / RIB 40)","na":27,"nb":10,"a":[["Pfam%3APF09260","Alpha-amylase, domain C"],["Pfam%3APF28338","AclK C-terminal domain"],["Pfam%3APF09206","Alpha-L-arabinofuranosidase B, catalytic"],["Pfam%3APF28380","Sesquiterpene cyclase astC-like C-terminal domain"],["Pfam%3APF13364","Beta-galactosidase second all-beta domain"],["Pfam%3APF10435","Beta-galactosidase, domain 2"]],"b":[["fatty_acids/oryzine-a.yaml","oryzine A"],["polyketides/kojic-acid.yaml","kojic acid"],["polyketides/oryzine-b.yaml","oryzine B"],["polyketides/ywa1.yaml","YWA1"],["shikimates_and_phenylpropanoids/2-4-dihydroxy-3-methoxypropiophenone.yaml","2,4'-dihydroxy-3'-methoxypropiophenone"],["shikimates_and_phenylpropanoids/8-methyldiaporthin.yaml","8-methyldiaporthin"]]},{"id":"NCBITaxon:5061","l":"Aspergillus niger","na":10,"nb":11,"a":[["Pfam%3APF17433","Glycosyl hydrolase family 49 N-terminal Ig-like domain"],["PROSITE%3APS00820","Glucoamylase active site region signature"],["PROSITE%3APS00920","Nitrilases / cyanide hydratase signature 1"],["PROSITE%3APS00502","Polygalacturonase active site"],["Pfam%3APF18841","Beta solenoid repeat from Dextranase"],["Pfam%3APF03718","Glycosyl hydrolase family 49"]],"b":[["amino_acids_and_peptides/ferrichrome.yaml","ferrichrome"],["polyketides/1-2-3-5-10-tetrahydroxy-7-methoxy-4-oxo-1-2-3-4-tetrahydroanthracen-2-yl-pentane.yaml","1-(2,3,5,10-tetrahydroxy-7-methoxy-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl)pentane-2,4-dione"],["polyketides/azanigerone-a.yaml","azanigerone A"],["polyketides/campyrone-b.yaml","campyrone B"],["polyketides/desmethyl-tan-1612.yaml","desmethyl TAN-1612"],["polyketides/fumonisin-b2.yaml","fumonisin B2"]]},{"id":"NCBITaxon:242507","l":"","na":10,"nb":10,"a":[["Pfam%3APF28293","Biotrophy-associated secreted protein 2"],["Pfam%3APF28414","Biotrophy-associated secreted protein 4"],["Pfam%3APF22997","Chitin synthase 4-like domain"],["Pfam%3APF27979","CON7 transcription factor helical domain"],["Pfam%3APF26980","Dicer-like protein 2, dsRNA binding domain"],["Pfam%3APF11327","Egh16-like virulence factor"]],"b":[["polyketides/1-alpha-l-2-o-methyl-6-deoxymannopyranosyloxy-3-6-8-trimethoxynaphthalene.yaml","1-(alpha-l-(2-O-methyl)-6-deoxymannopyranosyloxy)-3,6,8-trimethoxynaphthalene"],["polyketides/10-11-dihydroxymagnaporthepyrone.yaml","10,11-dihydroxymagnaporthepyrone"],["polyketides/12-13-dihydroxymagnaporthepyrone.yaml","12,13-dihydroxymagnaporthepyrone"],["polyketides/epipyriculol.yaml","epipyriculol"],["polyketides/naphthalene-1-3-6-8-tetrol.yaml","naphthalene-1,3,6,8-tetrol"],["polyketides/nectriapyrone-c.yaml","nectriapyrone C"]]},{"id":"UniProt:P18054","l":"","na":25,"nb":9,"a":[["EC%3A1.13.11.31","arachidonate 12-lipoxygenase"],["EC%3A1.13.11.33","arachidonate 15-lipoxygenase"],["EC%3A1.13.11.-","With incorporation of two atoms of oxygen"],["RHEA%3A10428","(5Z,8Z,11Z,14Z)-eicosatetraenoate + O2 = (12S)-hydroperoxy-(5Z,8Z,10E,14Z)-eicosatetraenoate"],["RHEA%3A16869","(5Z,8Z,11Z,14Z)-eicosatetraenoate + O2 = (15S)-hydroperoxy-(5Z,8Z,11Z,13E)-eicosatetraenoate"],["GO%3A0004052","arachidonate 12(S)-lipoxygenase activity"]],"b":[["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["amino_acids_and_peptides/actinonin.yaml","actinonin"],["fatty_acids/desferrioxamine-b.yaml","desferrioxamine B"],["fatty_acids/triacsin-c.yaml","triacsin C"],["polyketides/terreic-acid.yaml","terreic acid"],["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"UniProt:Q96RU2","l":"","na":14,"nb":9,"a":[["ComplexPortal%3ACPX-15530","-"],["ComplexPortal%3ACPX-15595","-"],["ComplexPortal%3ACPX-15768","-"],["ComplexPortal%3ACPX-24431","-"],["InterPro%3AIPR054108","Ubiquitin carboxyl-terminal hydrolase 25/28, UIM"],["CDD%3Acd02665","Peptidase_C19I"]],"b":[["alkaloids/esmeraldin.yaml","esmeraldin"],["alkaloids/fervenulin.yaml","fervenulin"],["alkaloids/neocarazostatin-a.yaml","neocarazostatin A"],["alkaloids/nybomycin.yaml","nybomycin"],["amino_acids_and_peptides/tyrocidine-a.yaml","tyrocidine A"],["polyketides/asukamycin.yaml","asukamycin"]]},{"id":"UniProt:O95398","l":"","na":20,"nb":8,"a":[["ComplexPortal%3ACPX-10829","-"],["ComplexPortal%3ACPX-12123","-"],["ComplexPortal%3ACPX-12892","-"],["ComplexPortal%3ACPX-13579","-"],["ComplexPortal%3ACPX-13585","-"],["ComplexPortal%3ACPX-14152","-"]],"b":[["alkaloids/8-azaguanine.yaml","8-azaguanine"],["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["amino_acids_and_peptides/thiostrepton.yaml","thiostrepton"],["fatty_acids/all-cis-5-8-11-14-17-icosapentaenoic-acid.yaml","all-cis-5,8,11,14,17-icosapentaenoic acid"],["fatty_acids/trans-aconitic-acid.yaml","trans-aconitic acid"],["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"NCBITaxon:246197","l":"Myxococcus xanthus DK1622","na":8,"nb":12,"a":[["Pfam%3APF27281","DevT C-terminal domain"],["Pfam%3APF27372","DevT N-terminal domain"],["Pfam%3APF17762","ParB HTH domain"],["Pfam%3APF01930","Domain of unknown function DUF83"],["Pfam%3APF09559","Cas6 Crispr"],["Pfam%3APF01905","CRISPR-associated negative auto-regulator DevR/Csa2"]],"b":[["alkaloids/myxochelin-a.yaml","myxochelin A"],["alkaloids/myxochelin-b-2.yaml","myxochelin B"],["amino_acids_and_peptides/cittilin-a.yaml","cittilin A"],["amino_acids_and_peptides/cittilin-b.yaml","cittilin B"],["amino_acids_and_peptides/myxochromide-a.yaml","myxochromide A"],["amino_acids_and_peptides/myxoprincomide-c506.yaml","myxoprincomide-c506"]]},{"id":"NCBITaxon:229533","l":"Fusarium graminearum PH-1","na":8,"nb":11,"a":[["Pfam%3APF18388","Atg29 N-terminal domain"],["Pfam%3APF27599","CcsR C-terminal domain"],["Pfam%3APF07110","EthD domain"],["Pfam%3APF11700","Vacuole effluxer Atg22 like"],["Pfam%3APF28504","Gramillins biosynthetic cluster protein GRA5"],["PROSITE%3APS00777","Glycosyl hydrolases family 11 (GH11) active site signature 2"]],"b":[["alkaloids/chrysogine.yaml","chrysogine"],["amino_acids_and_peptides/fusaoctaxin-a.yaml","fusaoctaxin A"],["polyketides/aurofusarin.yaml","aurofusarin"],["polyketides/prolipyrone-b.yaml","prolipyrone B"],["shikimates_and_phenylpropanoids/o-orsellinic-acid.yaml","o-orsellinic acid"],["terpenoids/15-acetyldeoxynivalenol.yaml","15-acetyldeoxynivalenol"]]},{"id":"NCBITaxon:1911","l":"Streptomyces griseus","na":7,"nb":32,"a":[["Pfam%3APF13207","AAA domain"],["Pfam%3APF27054","Beta-methylindole-3-pyruvate reductase C-terminal domain"],["Pfam%3APF26558","3-dehydroquinate synthase II C-terminal domain"],["Pfam%3APF01959","3-dehydroquinate synthase II N-terminal domain"],["Pfam%3APF13459","4Fe-4S single cluster domain"],["Pfam%3APF04655","Aminoglycoside/hydroxyurea antibiotic resistance kinase"]],"b":[["alkaloids/cycloheximide.yaml","cycloheximide"],["alkaloids/grixazone-a.yaml","grixazone A"],["alkaloids/iminimycin-a.yaml","iminimycin A"],["alkaloids/iminimycin-b.yaml","iminimycin B"],["alkaloids/indolmycin.yaml","indolmycin"],["alkaloids/melanin.yaml","melanin"]]},{"id":"NCBITaxon:223283","l":"Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)","na":14,"nb":7,"a":[["IDPO%3A0000030","entropic chain"],["IDPO%3A0000037","molecular recognition display site"],["Pfam%3APF16847","Avirulence AvrPtoB, BAK1-binding domain"],["Pfam%3APF09046","AvrPtoB E3 ubiquitin ligase"],["Pfam%3APF25965","ALG44 beta-barrel domain"],["Pfam%3APF25964","ALG44, barrel-sandwich hybrid domain"]],"b":[["alkaloids/yersiniabactin.yaml","yersiniabactin"],["amino_acids_and_peptides/syringafactin-a.yaml","syringafactin A"],["amino_acids_and_peptides/syringafactin-b.yaml","syringafactin B"],["amino_acids_and_peptides/syringafactin-c.yaml","syringafactin C"],["amino_acids_and_peptides/syringafactin-d.yaml","syringafactin D"],["amino_acids_and_peptides/syringafactin-e.yaml","syringafactin E"]]},{"id":"NCBITaxon:27334","l":"Penicillium expansum","na":7,"nb":10,"a":[["Pfam%3APF11786","Aft1 HRA domain"],["Pfam%3APF11787","Aft1 HRR domain"],["Pfam%3APF11785","Aft1 osmotic stress response (OSM) domain"],["Pfam%3APF14856","Pathogen effector; putative necrosis-inducing factor"],["PROSITE%3APS00624","GMC oxidoreductases signature 2"],["TED%3AAF-A0A0A2ILJ4-F1-model_v4_TED03","TED novel fold AF-A0A0A2ILJ4-F1-model_v4_TED03"]],"b":[["alkaloids/chaetoglobosin-a.yaml","chaetoglobosin A"],["alkaloids/chaetoglobosin-c.yaml","chaetoglobosin C"],["alkaloids/communesin-a.yaml","communesin A"],["alkaloids/communesin-b.yaml","communesin B"],["alkaloids/communesin-c.yaml","communesin C"],["alkaloids/communesin-d.yaml","communesin D"]]},{"id":"NCBITaxon:2024858","l":"","na":7,"nb":7,"a":[["TED%3AAF-A0A2D9T9L6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2D9T9L6-F1-model_v4_TED01"],["TED%3AAF-A0A2E0T9R7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2E0T9R7-F1-model_v4_TED01"],["TED%3AAF-A0A891ZV95-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A891ZV95-F1-model_v4_TED01"],["TED%3AAF-A0A2D9SYS7-F1-model_v4_TED02","TED novel fold AF-A0A2D9SYS7-F1-model_v4_TED02"],["TED%3AAF-A0A2D9TFN8-F1-model_v4_TED02","TED novel fold AF-A0A2D9TFN8-F1-model_v4_TED02"],["TED%3AAF-A0A2E0TMV1-F1-model_v4_TED03","TED novel fold AF-A0A2E0TMV1-F1-model_v4_TED03"]],"b":[["amino_acids_and_peptides/sandarazol-a.yaml","sandarazol A"],["amino_acids_and_peptides/sandarazol-c.yaml","sandarazol C"],["amino_acids_and_peptides/sandarazol-d.yaml","sandarazol D"],["amino_acids_and_peptides/sandarazol-f.yaml","sandarazol F"],["amino_acids_and_peptides/sandarazol-g.yaml","sandarazol G"],["unclassified/sandarazol-b.yaml","sandarazol B"]]},{"id":"UniProt:Q14694","l":"","na":27,"nb":6,"a":[["ComplexPortal%3ACPX-11609","-"],["ComplexPortal%3ACPX-11855","-"],["ComplexPortal%3ACPX-12223","-"],["ComplexPortal%3ACPX-12431","-"],["ComplexPortal%3ACPX-12812","-"],["ComplexPortal%3ACPX-13824","-"]],"b":[["alkaloids/esmeraldin.yaml","esmeraldin"],["alkaloids/fervenulin.yaml","fervenulin"],["alkaloids/nybomycin.yaml","nybomycin"],["polyketides/asukamycin.yaml","asukamycin"],["polyketides/dehydrorabelomycin.yaml","dehydrorabelomycin"],["polyketides/flaviolin.yaml","flaviolin"]]},{"id":"UniProt:Q99700","l":"","na":20,"nb":6,"a":[["ComplexPortal%3ACPX-12180","-"],["ComplexPortal%3ACPX-12321","-"],["ComplexPortal%3ACPX-12947","-"],["ComplexPortal%3ACPX-13401","-"],["ComplexPortal%3ACPX-15183","-"],["ComplexPortal%3ACPX-17860","-"]],"b":[["alkaloids/8-azaguanine.yaml","8-azaguanine"],["alkaloids/cycloheximide.yaml","cycloheximide"],["amino_acids_and_peptides/desferrioxamine-e.yaml","desferrioxamine E"],["polyketides/2-4-diacetylphloroglucinol.yaml","2,4-diacetylphloroglucinol"],["unclassified/antimycin-a.yaml","antimycin A"],["unclassified/echinomycin.yaml","echinomycin"]]},{"id":"NCBITaxon:1916","l":"Streptomyces lividans","na":6,"nb":18,"a":[["Pfam%3APF12324","Helix-turn-helix domain of alkylmercury lyase"],["Pfam%3APF27079","SpdB plasmid transfer protein, C-terminal HTH domain"],["Pfam%3APF27072","KilB plasmid transfer protein"],["Pfam%3APF08386","TAP-like protein"],["PROSITE%3APS00999","Streptomyces subtilisin-type inhibitors signature"],["Pfam%3APF03664","Glycosyl hydrolase family 62"]],"b":[["alkaloids/rebeccamycin.yaml","rebeccamycin"],["alkaloids/staurosporine.yaml","staurosporine"],["amino_acids_and_peptides/actinomycin-d.yaml","actinomycin D"],["amino_acids_and_peptides/dehydroxynocardamine.yaml","dehydroxynocardamine"],["amino_acids_and_peptides/goadsporin.yaml","goadsporin"],["carbohydrates/2-deoxystreptamine.yaml","2-deoxystreptamine"]]},{"id":"NCBITaxon:4577","l":"Zea mays","na":18,"nb":6,"a":[["IDPO%3A0000002","disorder"],["Pfam%3APF14861","Plant antimicrobial peptide"],["Pfam%3APF02041","Auxin binding protein"],["Pfam%3APF25436","BSD2 cysteine rich domain"],["Pfam%3APF23493","Cysteinyl-tRNA ligase anticodon binding domain"],["Pfam%3APF03330","Lytic transglycolase"]],"b":[["alkaloids/dimboa.yaml","DIMBOA"],["polyketides/emodin.yaml","emodin"],["terpenoids/zealexin-a1.yaml","zealexin A1"],["terpenoids/zealexin-b3.yaml","zealexin B3"],["terpenoids/zealexin-c2.yaml","zealexin C2"],["unclassified/aflatoxin.yaml","aflatoxin"]]},{"id":"UniProt:P40818","l":"","na":16,"nb":6,"a":[["ComplexPortal%3ACPX-13765","-"],["ComplexPortal%3ACPX-16972","-"],["ComplexPortal%3ACPX-18301","-"],["ComplexPortal%3ACPX-19098","-"],["ComplexPortal%3ACPX-24015","-"],["GO%3A0004843","cysteine-type deubiquitinase activity"]],"b":[["alkaloids/esmeraldin.yaml","esmeraldin"],["alkaloids/fervenulin.yaml","fervenulin"],["alkaloids/neocarazostatin-a.yaml","neocarazostatin A"],["alkaloids/nybomycin.yaml","nybomycin"],["polyketides/dehydrorabelomycin.yaml","dehydrorabelomycin"],["polyketides/flaviolin.yaml","flaviolin"]]},{"id":"NCBITaxon:321614","l":"","na":6,"nb":12,"a":[["Pfam%3APF11786","Aft1 HRA domain"],["Pfam%3APF11787","Aft1 HRR domain"],["Pfam%3APF26980","Dicer-like protein 2, dsRNA binding domain"],["Pfam%3APF18973","Putative Chitin binding like"],["Pfam%3APF25326","SRB8 ARM-like domain"],["TED%3AAF-A0A7U2I0S3-F1-model_v4_TED02","TED novel fold AF-A0A7U2I0S3-F1-model_v4_TED02"]],"b":[["alkaloids/phomacin-d.yaml","phomacin D"],["alkaloids/phomacin-e.yaml","phomacin E"],["polyketides/betaenone-b.yaml","betaenone B"],["polyketides/betaenone-c.yaml","betaenone C"],["polyketides/compound-3-2.yaml","compound 3"],["polyketides/compound-5-2.yaml","compound 5"]]},{"id":"UniProt:Q70CQ3","l":"","na":11,"nb":6,"a":[["ComplexPortal%3ACPX-14824","-"],["ComplexPortal%3ACPX-15800","-"],["ComplexPortal%3ACPX-20518","-"],["ComplexPortal%3ACPX-22415","-"],["ComplexPortal%3ACPX-22784","-"],["GO%3A0035871","protein K11-linked deubiquitination"]],"b":[["alkaloids/esmeraldin.yaml","esmeraldin"],["alkaloids/fervenulin.yaml","fervenulin"],["alkaloids/holomycin.yaml","holomycin"],["alkaloids/neocarazostatin-a.yaml","neocarazostatin A"],["polyketides/flaviolin.yaml","flaviolin"],["polyketides/nigericin.yaml","nigericin"]]},{"id":"UniProt:P09936","l":"","na":10,"nb":6,"a":[["GO%3A0031694","alpha-2A adrenergic receptor binding"],["GO%3A0008242","omega peptidase activity"],["InterPro%3AIPR057254","Ubiquitin carboxyl-terminal hydrolase family 1, cysteine active-site"],["CDD%3Acd09616","Peptidase_C12_UCH_L1_L3"],["InterPro%3AIPR001578","Peptidase C12, ubiquitin carboxyl-terminal hydrolase"],["Pfam%3APF01088","Ubiquitin carboxyl-terminal hydrolase, family 1"]],"b":[["alkaloids/esmeraldin.yaml","esmeraldin"],["alkaloids/fervenulin.yaml","fervenulin"],["polyketides/asukamycin.yaml","asukamycin"],["polyketides/chelocardin.yaml","chelocardin"],["polyketides/dehydrorabelomycin.yaml","dehydrorabelomycin"],["polyketides/flaviolin.yaml","flaviolin"]]},{"id":"NCBITaxon:10090","l":"Mus musculus","na":45870,"nb":5,"a":[["EC%3A1.1.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.1.98.-","With other, known, acceptors"],["EC%3A1.1.-.-","Acting on the CH-OH group of donors"],["EC%3A1.11.1.-","Peroxidases"],["EC%3A1.11.2.-","With H2O2 as acceptor, one oxygen atom of which is incorporated into the product"],["EC%3A1.13.11.-","With incorporation of two atoms of oxygen"]],"b":[["alkaloids/biotin.yaml","biotin"],["alkaloids/staurosporine-2.yaml","staurosporine"],["amino_acids_and_peptides/citrulline.yaml","citrulline"],["fatty_acids/all-cis-5-8-11-14-17-icosapentaenoic-acid.yaml","all-cis-5,8,11,14,17-icosapentaenoic acid"],["terpenoids/carotene.yaml","β-carotene"]]},{"id":"NCBITaxon:1280","l":"Staphylococcus aureus","na":46,"nb":5,"a":[["IDPO%3A0000030","entropic chain"],["Pfam%3APF03373","Octapeptide repeat"],["Pfam%3APF13166","AAA domain"],["Pfam%3APF02216","B domain"],["Pfam%3APF27533","CapK C-terminal domain"],["Pfam%3APF21574","CRISPR-associated endonuclease Cas9, C-terminal domain"]],"b":[["amino_acids_and_peptides/staphyloferrin-b.yaml","staphyloferrin B"],["amino_acids_and_peptides/staphylopine.yaml","staphylopine"],["unclassified/leuvalin.yaml","leuvalin"],["unclassified/phevalin.yaml","phevalin"],["unclassified/tyrvalin.yaml","tyrvalin"]]},{"id":"NCBITaxon:34","l":"Myxococcus xanthus","na":5,"nb":31,"a":[["TED%3AAF-A0A4Y6CF56-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4Y6CF56-F1-model_v4_TED01"],["TED%3AAF-A0A4Y6CNZ1-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A4Y6CNZ1-F1-model_v4_TED02"],["TED%3AAF-A0A7Y4IIX4-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A7Y4IIX4-F1-model_v4_TED01"],["TED%3AAF-A0A4Y6B7F9-F1-model_v4_TED01","TED novel fold AF-A0A4Y6B7F9-F1-model_v4_TED01"],["TED%3AAF-A0A7Y4IR70-F1-model_v4_TED01","TED novel fold AF-A0A7Y4IR70-F1-model_v4_TED01"]],"b":[["alkaloids/myxochelin-b-2.yaml","myxochelin B"],["alkaloids/myxofacycline-e.yaml","myxofacycline E"],["alkaloids/myxofacycline-f.yaml","myxofacycline F"],["alkaloids/myxofacycline-g.yaml","myxofacycline G"],["amino_acids_and_peptides/cittilin-a.yaml","cittilin A"],["amino_acids_and_peptides/cittilin-b.yaml","cittilin B"]]},{"id":"NCBITaxon:354","l":"Azotobacter vinelandii","na":25,"nb":5,"a":[["Pfam%3APF13372","Alginate export"],["Pfam%3APF25965","ALG44 beta-barrel domain"],["Pfam%3APF25964","ALG44, barrel-sandwich hybrid domain"],["Pfam%3APF16844","Dinitrogenase iron-molybdenum cofactor, N-terminal"],["Pfam%3APF00142","4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family"],["Pfam%3APF27446","Uridylyltransferase GlnD fifth domain"]],"b":[["alkaloids/aminochelin.yaml","aminochelin"],["alkaloids/azotochelin.yaml","azotochelin"],["alkaloids/protochelin.yaml","protochelin"],["amino_acids_and_peptides/azotobactin-d.yaml","azotobactin D"],["amino_acids_and_peptides/vibrioferrin.yaml","vibrioferrin"]]},{"id":"UniProt:O14656","l":"","na":21,"nb":5,"a":[["ComplexPortal%3ACPX-21660","-"],["ComplexPortal%3ACPX-26140","-"],["ComplexPortal%3ACPX-26338","Cytoplasmic organelles"],["ComplexPortal%3ACPX-26301","Secretory organelles"],["GO%3A0008092","cytoskeletal protein binding"],["GO%3A0019894","kinesin binding"]],"b":[["alkaloids/chloramphenicol.yaml","chloramphenicol"],["alkaloids/cycloheximide.yaml","cycloheximide"],["alkaloids/tioguanine.yaml","tioguanine"],["amino_acids_and_peptides/cyclosporin-a.yaml","cyclosporin A"],["polyketides/daunorubicin.yaml","daunorubicin"]]},{"id":"NCBITaxon:303","l":"Pseudomonas putida","na":20,"nb":5,"a":[["Pfam%3APF14535","AMP-binding enzyme C-terminal domain"],["Pfam%3APF13442","Cytochrome C oxidase, cbb3-type, subunit III"],["Pfam%3APF22247","Catechol 2,3-dioxygenase-like N-terminal domain"],["Pfam%3APF25371","Domain of unknown function (DUF7884)"],["Pfam%3APF19301","LigXa C-terminal domain like"],["Pfam%3APF12729","Four helix bundle sensory module for signal transduction"]],"b":[["alkaloids/promysalin.yaml","promysalin"],["polyketides/pseudopyronine-a.yaml","pseudopyronine A"],["polyketides/pseudopyronine-b.yaml","pseudopyronine B"],["unclassified/putisolvin-iii.yaml","putisolvin III"],["unclassified/putisolvin-v.yaml","putisolvin V"]]},{"id":"NCBITaxon:3562","l":"Spinacia oleracea","na":13,"nb":5,"a":[["Pfam%3APF21329","Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain"],["Pfam%3APF02941","Ferredoxin thioredoxin reductase variable alpha chain"],["Pfam%3APF02943","Ferredoxin thioredoxin reductase catalytic beta chain"],["Pfam%3APF17257","Family of unknown function (DUF5323)"],["PROSITE%3APS00567","Phosphoribulokinase signature"],["PROSITE%3APS01026","Photosystem I psaG and psaK proteins signature"]],"b":[["terpenoids/yossoside-i.yaml","Yossoside I"],["terpenoids/yossoside-ii.yaml","Yossoside II"],["terpenoids/yossoside-iii.yaml","Yossoside III"],["terpenoids/yossoside-iv.yaml","Yossoside IV"],["terpenoids/yossoside-v.yaml","Yossoside V"]]},{"id":"NCBITaxon:615","l":"Serratia marcescens","na":13,"nb":5,"a":[["Pfam%3APF03174","Chitobiase/beta-hexosaminidase C-terminal domain"],["Pfam%3APF03173","Putative carbohydrate binding domain"],["Pfam%3APF02838","Glycosyl hydrolase family 20, domain 2"],["Pfam%3APF06438","Heme-binding protein A (HasA)"],["Pfam%3APF02974","Protease inhibitor Inh"],["Pfam%3APF05247","Flagellar transcriptional activator (FlhD)"]],"b":[["alkaloids/prodigiosin-2.yaml","prodigiosin"],["alkaloids/prodigiosin.yaml","prodigiosin"],["alkaloids/serratiochelin-a.yaml","serratiochelin A"],["carbohydrates/2-amino-2-deoxyadenosine.yaml","2'-amino-2'-deoxyadenosine"],["polyketides/oocydin-a.yaml","oocydin A"]]},{"id":"UniProt:P36969","l":"","na":12,"nb":5,"a":[["ComplexPortal%3ACPX-18066","-"],["GO%3A0047066","phospholipid-hydroperoxide glutathione peroxidase activity"],["GO%3A0008430","selenium binding"],["GO%3A0034599","cellular response to oxidative stress"],["InterPro%3AIPR029759","Glutathione peroxidase active site"],["InterPro%3AIPR029760","Glutathione peroxidase conserved site"]],"b":[["alkaloids/ergotamine.yaml","ergotamine"],["fatty_acids/all-cis-5-8-11-14-17-icosapentaenoic-acid.yaml","all-cis-5,8,11,14,17-icosapentaenoic acid"],["polyketides/pentamycin.yaml","pentamycin"],["shikimates_and_phenylpropanoids/ochratoxin-a.yaml","ochratoxin A"],["unclassified/antimycin-a.yaml","antimycin A"]]},{"id":"NCBITaxon:5507","l":"Fusarium oxysporum","na":5,"nb":11,"a":[["Pfam%3APF02015","Glycosyl hydrolase family 45"],["PROSITE%3APS01140","Glycosyl hydrolases family 45 active site"],["TED%3AAF-A0A2H3TJY2-F1-model_v4_TED01","TED novel fold AF-A0A2H3TJY2-F1-model_v4_TED01"],["TED%3AAF-A0A420N954-F1-model_v4_TED01","TED novel fold AF-A0A420N954-F1-model_v4_TED01"],["TED%3AAF-A0A420P6J4-F1-model_v4_TED01","TED novel fold AF-A0A420P6J4-F1-model_v4_TED01"]],"b":[["alkaloids/fusaric-acid.yaml","fusaric acid"],["polyketides/bikaverin.yaml","bikaverin"],["polyketides/fumonisin-b1.yaml","Fumonisin B1"],["polyketides/fumonisin-c1.yaml","Fumonisin C1"],["polyketides/fumonisin-c2.yaml","Fumonisin C2"],["polyketides/fumonisin-c3.yaml","Fumonisin C3"]]},{"id":"NCBITaxon:953739","l":"Streptomyces venezuelae ATCC 10712","na":5,"nb":10,"a":[["Pfam%3APF11583","P-aminobenzoate N-oxygenase AurF"],["Pfam%3APF18456","Diiron non-heme beta-hydroxylase N-terminal domain"],["Pfam%3APF07931","Chloramphenicol phosphotransferase-like protein"],["Pfam%3APF02650","WhiA C-terminal HTH domain"],["Pfam%3APF14527","WhiA LAGLIDADG-like domain"]],"b":[["alkaloids/chloramphenicol.yaml","chloramphenicol"],["alkaloids/gaburedin-d.yaml","gaburedin D"],["alkaloids/watasemycin-a.yaml","watasemycin A"],["alkaloids/watasemycin-b.yaml","watasemycin B"],["amino_acids_and_peptides/gaburedin-a.yaml","gaburedin A"],["amino_acids_and_peptides/gaburedin-b.yaml","gaburedin B"]]},{"id":"NCBITaxon:63737","l":"Nostoc punctiforme PCC 73102","na":5,"nb":7,"a":[["Pfam%3APF11266","Long-chain fatty aldehyde decarbonylase"],["Pfam%3APF21808","Bacterial dynamin-like protein, helical domain"],["Pfam%3APF18460","Heterocyst differentiation regulator C-terminal Hood domain"],["Pfam%3APF13619","KTSC domain"],["PROSITE%3APS01026","Photosystem I psaG and psaK proteins signature"]],"b":[["amino_acids_and_peptides/microviridin-n3.yaml","microviridin N3"],["amino_acids_and_peptides/microviridin-n4.yaml","microviridin N4"],["amino_acids_and_peptides/microviridin-n6.yaml","microviridin N6"],["amino_acids_and_peptides/microviridin-n7.yaml","microviridin N7"],["amino_acids_and_peptides/microviridin-n8.yaml","microviridin N8"],["amino_acids_and_peptides/microviridin-n9.yaml","microviridin N9"]]},{"id":"NCBITaxon:5081","l":"","na":5,"nb":6,"a":[["Pfam%3APF13364","Beta-galactosidase second all-beta domain"],["Pfam%3APF10435","Beta-galactosidase, domain 2"],["Pfam%3APF13363","Beta-galactosidase, domain 3"],["Pfam%3APF01301","Glycosyl hydrolases family 35"],["PROSITE%3APS01182","Glycosyl hydrolases family 35 putative active site"]],"b":[["alkaloids/citridone-a.yaml","citridone A"],["alkaloids/citridone-b-2.yaml","citridone B'"],["alkaloids/citridone-b.yaml","citridone B"],["alkaloids/cj-15-696.yaml","CJ-15,696"],["alkaloids/cj-16-173.yaml","CJ-16,173"],["polyketides/gregatin-a.yaml","gregatin A"]]},{"id":"NCBITaxon:549","l":"Pantoea agglomerans","na":6,"nb":5,"a":[["Pfam%3APF02929","Beta galactosidase small chain"],["Pfam%3APF27279","Fumarate--diaminopropanoate ligase C-terminal domain"],["Pfam%3APF18024","Helix-turn-helix domain"],["Pfam%3APF16353","Beta-galactosidase, domain 4"],["PROSITE%3APS00594","Aromatic amino acids permeases signature"],["PROSITE%3APS00853","Beta-eliminating lyases pyridoxal-phosphate attachment site"]],"b":[["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["amino_acids_and_peptides/andrimid.yaml","andrimid"],["amino_acids_and_peptides/desferrioxamine-e.yaml","desferrioxamine E"],["amino_acids_and_peptides/pantocin-a.yaml","pantocin A"],["carbohydrates/2-amino-2-deoxyadenosine.yaml","2'-amino-2'-deoxyadenosine"]]},{"id":"NCBITaxon:43658","l":"Pseudoalteromonas rubra","na":5,"nb":5,"a":[["proteintraitsmech%3AELIFE109154_Orn_monoox","Metallophore-associated ornithine N5-monooxygenase family"],["TED%3AAF-A0A0F4QZE1-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A0F4QZE1-F1-model_v4_TED02"],["TED%3AAF-A0A0U3GWJ2-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A0U3GWJ2-F1-model_v4_TED01"],["TED%3AAF-A0A0F4QSG0-F1-model_v4_TED02","TED novel fold AF-A0A0F4QSG0-F1-model_v4_TED02"],["TED%3AAF-A0A0L0EPH9-F1-model_v4_TED03","TED novel fold AF-A0A0L0EPH9-F1-model_v4_TED03"]],"b":[["alkaloids/prodigiosin.yaml","prodigiosin"],["polyketides/nonyltyrazolone.yaml","nonyltyrazolone"],["polyketides/undecyltyrazolone.yaml","undecyltyrazolone"],["shikimates_and_phenylpropanoids/z-6-undecenyltyrazolone.yaml","(Z)-ω-6-undecenyltyrazolone"],["unclassified/heptyltyrazolone.yaml","heptyltyrazolone"]]},{"id":"NCBITaxon:6239","l":"Caenorhabditis elegans","na":9682,"nb":4,"a":[["EC%3A1.11.1.-","Peroxidases"],["EC%3A1.11.2.-","With H2O2 as acceptor, one oxygen atom of which is incorporated into the product"],["EC%3A1.14.14.-","With reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.17.-","With reduced ascorbate as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.19.-","With oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water"],["EC%3A1.14.99.-","Miscellaneous"]],"b":[["alkaloids/biotin.yaml","biotin"],["amino_acids_and_peptides/citrulline.yaml","citrulline"],["fatty_acids/itaconic-acid.yaml","itaconic acid"],["fatty_acids/trans-aconitic-acid.yaml","trans-aconitic acid"]]},{"id":"NCBITaxon:10116","l":"Rattus norvegicus","na":1002,"nb":4,"a":[["IDPO%3A0000011","disorder to order"],["IDPO%3A0000030","entropic chain"],["IDPO%3A0000031","flexible C-terminal tail"],["IDPO%3A0000033","flexible linker"],["IDPO%3A0000041","glycosylation display site"],["IDPO%3A0000003","molten globule"]],"b":[["alkaloids/huperzine-a.yaml","huperzine A"],["alkaloids/methylarcyriarubin.yaml","methylarcyriarubin"],["alkaloids/staurosporine-2.yaml","staurosporine"],["amino_acids_and_peptides/lugdunin.yaml","lugdunin"]]},{"id":"NCBITaxon:39947","l":"Oryza sativa subsp. japonica","na":158,"nb":4,"a":[["Pfam%3APF03157","High molecular weight glutenin subunit"],["Pfam%3APF26249","RdRP3/4/5, N-terminal four helical bundle domain"],["Pfam%3APF23242","TRIP13-like, AAA+ ATPase lid C-terminal domain"],["Pfam%3APF26791","AAPxQ domain"],["Pfam%3APF24922","Acyl-CoA-binding domain-containing protein 4-6, C-terminal"],["Pfam%3APF04864","Allinase"]],"b":[["terpenoids/10-oxodepressin.yaml","10-Oxodepressin"],["terpenoids/momilactone-b.yaml","momilactone B"],["terpenoids/oryzalides.yaml","oryzalides"],["terpenoids/phytocassane.yaml","phytocassane"]]},{"id":"UniProt:P04637","l":"","na":55,"nb":4,"a":[["ComplexPortal%3ACPX-12293","-"],["ComplexPortal%3ACPX-12528","-"],["ComplexPortal%3ACPX-13029","-"],["ComplexPortal%3ACPX-14009","-"],["ComplexPortal%3ACPX-16240","-"],["ComplexPortal%3ACPX-21406","-"]],"b":[["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["fatty_acids/trans-aconitic-acid.yaml","trans-aconitic acid"],["polyketides/herboxidiene.yaml","herboxidiene"],["terpenoids/zeaxanthin.yaml","zeaxanthin"]]},{"id":"NCBITaxon:5059","l":"Aspergillus flavus","na":4,"nb":30,"a":[["Pfam%3APF11720","Peptidase inhibitor I78 family"],["Pfam%3APF12296","Hydrophobic surface binding protein A"],["TED%3AAF-A0A3M7JGA1-F1-model_v4_TED02","TED novel fold AF-A0A3M7JGA1-F1-model_v4_TED02"],["TED%3AAF-A0A7G5JNS3-F1-model_v4_TED03","TED novel fold AF-A0A7G5JNS3-F1-model_v4_TED03"]],"b":[["alkaloids/actinopolymorphol-c.yaml","actinopolymorphol C"],["alkaloids/imizoquin-c.yaml","imizoquin C"],["alkaloids/imizoquin-d.yaml","imizoquin D"],["alkaloids/leporin-b.yaml","leporin B"],["amino_acids_and_peptides/ditryptophenaline.yaml","(-)-ditryptophenaline"],["amino_acids_and_peptides/imizoquin-a.yaml","imizoquin A"]]},{"id":"NCBITaxon:573","l":"Klebsiella pneumoniae","na":30,"nb":4,"a":[["Pfam%3APF08787","Alginate lyase"],["Pfam%3APF13354","Beta-lactamase enzyme family"],["Pfam%3APF08218","Citrate lyase ligase C-terminal domain"],["Pfam%3APF13727","CoA-binding domain"],["Pfam%3APF12324","Helix-turn-helix domain of alkylmercury lyase"],["Pfam%3APF20714","DpiA-like helix-turn-helix domain"]],"b":[["alkaloids/tilivalline.yaml","tilivalline"],["amino_acids_and_peptides/colibactin.yaml","colibactin"],["amino_acids_and_peptides/klebsidin.yaml","klebsidin"],["carbohydrates/capsular-polysaccharide-2.yaml","capsular polysaccharide"]]},{"id":"NCBITaxon:1396","l":"Bacillus cereus","na":23,"nb":4,"a":[["Pfam%3APF08878","HamA"],["Pfam%3APF05791","Bacillus haemolytic enterotoxin (HBL)"],["Pfam%3APF10803","Spore germination GerPB"],["Pfam%3APF10737","Spore germination protein GerPC"],["Pfam%3APF10970","Spore germination protein GerPE"],["Pfam%3APF07486","Cell Wall Hydrolase"]],"b":[["alkaloids/zwittermicin-a.yaml","zwittermicin A"],["amino_acids_and_peptides/livipeptin.yaml","Livipeptin"],["carbohydrates/tunicamycin.yaml","tunicamycin"],["unclassified/cereulide.yaml","cereulide"]]},{"id":"NCBITaxon:378806","l":"Stigmatella aurantiaca DW4/3-1","na":4,"nb":17,"a":[["TED%3AAF-Q098I8-F1-model_v4_TED01","TED highly-symmetric fold AF-Q098I8-F1-model_v4_TED01"],["TED%3AAF-E3FRW3-F1-model_v4_TED01","TED novel fold AF-E3FRW3-F1-model_v4_TED01"],["TED%3AAF-E3G0M4-F1-model_v4_TED01","TED novel fold AF-E3G0M4-F1-model_v4_TED01"],["TED%3AAF-Q08VS7-F1-model_v4_TED01","TED novel fold AF-Q08VS7-F1-model_v4_TED01"]],"b":[["polyketides/aurafuron-a.yaml","aurafuron A"],["polyketides/dawenol.yaml","dawenol"],["unclassified/dkxanthene-504.yaml","dkxanthene 504"],["unclassified/dkxanthene-508.yaml","dkxanthene 508"],["unclassified/dkxanthene-518.yaml","dkxanthene 518"],["unclassified/dkxanthene-520.yaml","dkxanthene 520"]]},{"id":"NCBITaxon:5518","l":"Fusarium graminearum","na":4,"nb":14,"a":[["Pfam%3APF09118","Galactose oxidase-like, Early set domain"],["Pfam%3APF07250","Glyoxal oxidase N-terminus"],["TED%3AAF-A0A2H3FY84-F1-model_v4_TED03","TED novel fold AF-A0A2H3FY84-F1-model_v4_TED03"],["TED%3AAF-A0A2H3G191-F1-model_v4_TED01","TED novel fold AF-A0A2H3G191-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/fusaoctaxin-a.yaml","fusaoctaxin A"],["polyketides/aurofusarin.yaml","aurofusarin"],["polyketides/fusarielin-h.yaml","fusarielin H"],["polyketides/gibepyrone-a.yaml","gibepyrone A"],["polyketides/prolipyrone-b.yaml","prolipyrone B"],["polyketides/zearalenone.yaml","zearalenone"]]},{"id":"NCBITaxon:1901","l":"Streptomyces clavuligerus","na":4,"nb":13,"a":[["Pfam%3APF16861","Carbamoyltransferase C-terminus"],["Pfam%3APF02543","Carbamoyltransferase N-terminus"],["Pfam%3APF01960","ArgJ family"],["Pfam%3APF07467","Beta-lactamase inhibitor (BLIP)"]],"b":[["alkaloids/holomycin.yaml","holomycin"],["alkaloids/staurosporine.yaml","staurosporine"],["amino_acids_and_peptides/2-formyloxymethylclavam.yaml","2-formyloxymethylclavam"],["amino_acids_and_peptides/2-hydroxymethylclavam.yaml","2-hydroxymethylclavam"],["amino_acids_and_peptides/alanylclavam.yaml","alanylclavam"],["amino_acids_and_peptides/cephamycin-c.yaml","cephamycin C"]]},{"id":"NCBITaxon:1914","l":"Streptomyces lavendulae","na":4,"nb":12,"a":[["Pfam%3APF01678","Diaminopimelate epimerase"],["Pfam%3APF27100","D-cycloserine synthetase DcsG, N-terminal domain"],["Pfam%3APF20240","Domain of unknown function (DUF6597)"],["Pfam%3APF11731","Pathogenicity locus"]],"b":[["alkaloids/indigoidine.yaml","indigoidine"],["alkaloids/saframycin-a.yaml","saframycin A"],["alkaloids/saframycin-b.yaml","saframycin B"],["amino_acids_and_peptides/cycloserine.yaml","cycloserine"],["amino_acids_and_peptides/isocomplestatin.yaml","isocomplestatin"],["carbohydrates/showdomycin.yaml","showdomycin"]]},{"id":"NCBITaxon:317","l":"Pseudomonas syringae","na":4,"nb":10,"a":[["PROSITE%3APS00314","Bacterial ice-nucleation proteins octamer repeat"],["Pfam%3APF00818","Ice nucleation protein repeat (2 copies)"],["TED%3AAF-A0A085UKV7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A085UKV7-F1-model_v4_TED01"],["TED%3AAF-A0A4R6IU28-F1-model_v4_TED02","TED novel fold AF-A0A4R6IU28-F1-model_v4_TED02"]],"b":[["alkaloids/labradorin-1.yaml","labradorin 1"],["alkaloids/labradorin-2.yaml","labradorin 2"],["alkaloids/secimide.yaml","secimide"],["amino_acids_and_peptides/phaseolotoxin.yaml","phaseolotoxin"],["amino_acids_and_peptides/syringolin-a.yaml","syringolin A"],["amino_acids_and_peptides/tabtoxin.yaml","tabtoxin"]]},{"id":"NCBITaxon:500485","l":"Penicillium rubens Wisconsin 54-1255","na":4,"nb":9,"a":[["Pfam%3APF03417","Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase"],["Pfam%3APF03659","Glycosyl hydrolase family 71"],["PROSITE%3APS00185","Isopenicillin N synthase signature 1"],["PROSITE%3APS00186","Isopenicillin N synthase signature 2"]],"b":[["alkaloids/dehydrohistidyltryptophanyldiketopiperazine.yaml","dehydrohistidyltryptophanyldiketopiperazine"],["alkaloids/glandicoline-a.yaml","glandicoline A"],["alkaloids/glandicoline-b.yaml","glandicoline B"],["alkaloids/meleagrine.yaml","meleagrine"],["polyketides/sorbicillin.yaml","sorbicillin"],["terpenoids/conidiogenone.yaml","conidiogenone"]]},{"id":"NCBITaxon:5076","l":"Penicillium chrysogenum","na":4,"nb":9,"a":[["Pfam%3APF03417","Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase"],["Pfam%3APF11402","Antifungal protein"],["PROSITE%3APS00185","Isopenicillin N synthase signature 1"],["PROSITE%3APS00186","Isopenicillin N synthase signature 2"]],"b":[["alkaloids/chrysogine.yaml","chrysogine"],["amino_acids_and_peptides/benzylpenicillin-sodium.yaml","benzylpenicillin sodium"],["amino_acids_and_peptides/isopenicillin-n.yaml","isopenicillin N"],["amino_acids_and_peptides/n-5s-5-ammonio-5-carboxylatopentanoyl-l-cysteinyl-d-valinate.yaml","N-[(5S)-5-ammonio-5-carboxylatopentanoyl]-L-cysteinyl-D-valinate"],["polyketides/2-3-dihydrosorbicillin.yaml","2'3'-dihydrosorbicillin"],["polyketides/bisorbicillinol.yaml","bisorbicillinol"]]},{"id":"NCBITaxon:1836","l":"Saccharopolyspora erythraea","na":4,"nb":8,"a":[["Pfam%3APF08990","Erythronolide synthase docking domain"],["Pfam%3APF09277","Erythronolide synthase, docking"],["Pfam%3APF12728","Helix-turn-helix domain"],["Pfam%3APF12307","Protein of unknown function (DUF3631)"]],"b":[["amino_acids_and_peptides/erythrochelin.yaml","erythrochelin"],["polyketides/3-3-diflaviolin.yaml","3,3'-diflaviolin"],["polyketides/erythromycin-a.yaml","erythromycin A"],["polyketides/erythromycin-b.yaml","erythromycin B"],["polyketides/flaviolin-rhamnoside.yaml","flaviolin rhamnoside"],["polyketides/flaviolin.yaml","flaviolin"]]},{"id":"NCBITaxon:227882","l":"Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680)","na":8,"nb":4,"a":[["Pfam%3APF17390","Bacterial alpha-L-rhamnosidase C-terminal domain"],["Pfam%3APF08531","Alpha-L-rhamnosidase N-terminal domain"],["Pfam%3APF05592","Bacterial alpha-L-rhamnosidase concanavalin-like domain"],["Pfam%3APF26366","Domain of unknown function (DUF8094)"],["Pfam%3APF25788","Rha78A-like, N-terminal immunoglobulin domain"],["Pfam%3APF06781","Cell division protein CrgA"]],"b":[["amino_acids_and_peptides/edha.yaml","EDHA"],["polyketides/filipin-iii.yaml","filipin III"],["terpenoids/avermitilol.yaml","avermitilol"],["terpenoids/pentalenolactone.yaml","pentalenolactone"]]},{"id":"NCBITaxon:326423","l":"Bacillus velezensis FZB42","na":4,"nb":8,"a":[["Pfam%3APF21607","[Acyl-carrier-protein] S-malonyltransferase, inserted helical domain"],["Pfam%3APF21996","Histidyl-tRNA synthetase HisZ, C-terminal domain"],["Pfam%3APF07293","Protein of unknown function (DUF1450)"],["Pfam%3APF12227","Protein of unknown function (DUF3603)"]],"b":[["amino_acids_and_peptides/bacillomycin-d.yaml","bacillomycin D"],["amino_acids_and_peptides/bacilysin.yaml","bacilysin"],["polyketides/bacillaene.yaml","bacillaene"],["polyketides/difficidin.yaml","difficidin"],["polyketides/macrolactin-h.yaml","macrolactin H"],["unclassified/corynebactin.yaml","corynebactin"]]},{"id":"NCBITaxon:1397","l":"Niallia circulans","na":6,"nb":4,"a":[["Pfam%3APF03423","Carbohydrate binding domain (family 25)"],["Pfam%3APF13199","Glycosyl hydrolase family 66"],["Pfam%3APF14399","Butirosin biosynthesis protein H, N-terminal"],["Pfam%3APF19634","Family of unknown function (DUF6137)"],["PROSITE%3APS60000","Chitosanases families 46 and 80 active sites signature"],["TED%3AAF-A0A0J1IR10-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A0J1IR10-F1-model_v4_TED01"]],"b":[["carbohydrates/butirosin-a.yaml","butirosin A"],["carbohydrates/butirosin-b.yaml","butirosin B"],["carbohydrates/butirosin.yaml","butirosin"],["unclassified/pelgipeptin-b.yaml","Pelgipeptin B"]]},{"id":"NCBITaxon:32049","l":"Picosynechococcus sp. PCC 7002","na":6,"nb":4,"a":[["Pfam%3APF09367","CpeS-like protein"],["Pfam%3APF06206","CpeT/CpcT family (DUF1001)"],["Pfam%3APF12965","Domain of unknown function (DUF3854)"],["Pfam%3APF19928","Domain of unknown function (DUF6391)"],["Pfam%3APF09366","Protein of unknown function (DUF1997)"],["Pfam%3APF14870","Photosynthesis system II assembly factor YCF48"]],"b":[["alkaloids/synechobactin-a.yaml","synechobactin A"],["alkaloids/synechobactin-b.yaml","synechobactin B"],["alkaloids/synechobactin-c.yaml","synechobactin C"],["fatty_acids/nonadec-1-ene.yaml","nonadec-1-ene"]]},{"id":"NCBITaxon:1393","l":"Brevibacillus brevis","na":5,"nb":4,"a":[["Pfam%3APF03306","Alpha-acetolactate decarboxylase"],["Pfam%3APF05384","Sensor protein DegS"],["TED%3AAF-A0A2Z4MK38-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2Z4MK38-F1-model_v4_TED01"],["TED%3AAF-A0A2Z4MPQ6-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A2Z4MPQ6-F1-model_v4_TED02"],["TED%3AAF-A0A517IGN3-F1-model_v4_TED03","TED highly-symmetric fold AF-A0A517IGN3-F1-model_v4_TED03"]],"b":[["alkaloids/ulbactin-f.yaml","ulbactin F"],["alkaloids/ulbactin-g.yaml","ulbactin G"],["amino_acids_and_peptides/gramicidin.yaml","gramicidin"],["amino_acids_and_peptides/tyrocidine-a.yaml","tyrocidine A"]]},{"id":"NCBITaxon:31958","l":"Amycolatopsis orientalis","na":5,"nb":4,"a":[["Pfam%3APF16990","Carbohydrate binding module (family 35)"],["Pfam%3APF14696","Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal"],["Pfam%3APF03559","NDP-hexose 2,3-dehydratase"],["Pfam%3APF18368","Exo-beta-D-glucosaminidase Ig-fold domain"],["TED%3AAF-K4FDK5-F1-model_v4_TED01","TED highly-symmetric fold AF-K4FDK5-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/chloroeremomycin.yaml","chloroeremomycin"],["amino_acids_and_peptides/vancomycin.yaml","vancomycin"],["polyketides/eco-0501.yaml","ECO-0501"],["polyketides/quartromicin-a1.yaml","quartromicin A1"]]},{"id":"NCBITaxon:43","l":"Cystobacter fuscus","na":4,"nb":5,"a":[["TED%3AAF-A0A250J1A4-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A250J1A4-F1-model_v4_TED01"],["TED%3AAF-A0A250J4G5-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A250J4G5-F1-model_v4_TED01"],["TED%3AAF-A0A250J8W0-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A250J8W0-F1-model_v4_TED01"],["TED%3AAF-A0A250J3K5-F1-model_v4_TED03","TED novel fold AF-A0A250J3K5-F1-model_v4_TED03"]],"b":[["amino_acids_and_peptides/cystomanamide-a.yaml","cystomanamide A"],["amino_acids_and_peptides/cystomanamide-b.yaml","cystomanamide B"],["amino_acids_and_peptides/cystomanamide-c.yaml","cystomanamide C"],["amino_acids_and_peptides/cystomanamide-d.yaml","cystomanamide D"],["unclassified/cystothiazole-a.yaml","cystothiazole A"]]},{"id":"NCBITaxon:48","l":"Archangium gephyra","na":4,"nb":4,"a":[["TED%3AAF-A0A0G2ZQX3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A0G2ZQX3-F1-model_v4_TED01"],["TED%3AAF-A0A0G3A8M9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A0G3A8M9-F1-model_v4_TED01"],["TED%3AAF-A0A2W5T6H4-F1-model_v4_TED03","TED highly-symmetric fold AF-A0A2W5T6H4-F1-model_v4_TED03"],["TED%3AAF-A0A0G2ZR59-F1-model_v4_TED01","TED novel fold AF-A0A0G2ZR59-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/tubulysin-f.yaml","tubulysin F"],["amino_acids_and_peptides/tubulysin-g.yaml","tubulysin G"],["amino_acids_and_peptides/tubulysin-i.yaml","tubulysin I"],["polyketides/aurafuron-a.yaml","aurafuron A"]]},{"id":"UniProt:P00784","l":"","na":4,"nb":4,"a":[["EC%3A3.4.22.2","papain"],["MCSA%3A174","papain"],["proteintraitsmech%3ABIOLIP_ALD","ALD-binding site"],["proteintraitsmech%3AMETALPDB_RU_DINUCLEAR","dinuclear ruthenium site"]],"b":[["alkaloids/ergotamine.yaml","ergotamine"],["amino_acids_and_peptides/leupeptin-a.yaml","leupeptin A"],["fatty_acids/all-cis-5-8-11-14-17-icosapentaenoic-acid.yaml","all-cis-5,8,11,14,17-icosapentaenoic acid"],["terpenoids/carotene.yaml","β-carotene"]]},{"id":"NCBITaxon:83333","l":"Escherichia coli (strain K12)","na":17470,"nb":3,"a":[["EC%3A1.1.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.1.-.-","Acting on the CH-OH group of donors"],["EC%3A1.14.13.-","With NADH or NADPH as one donor, and incorporation of one atom of oxygen"],["EC%3A1.16.-.-","Oxidizing metal ions"],["EC%3A1.18.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.2.7.-","With an iron-sulfur protein as acceptor"]],"b":[["amino_acids_and_peptides/feglymycin.yaml","feglymycin"],["amino_acids_and_peptides/n-acetyltryptophan.yaml","N-acetyltryptophan"],["unclassified/telomestatin.yaml","telomestatin"]]},{"id":"NCBITaxon:9913","l":"Bos taurus","na":435,"nb":3,"a":[["IDPO%3A0000018","disorder to molten globule"],["IDPO%3A0000011","disorder to order"],["IDPO%3A0000019","disorder to pre-molten globule"],["IDPO%3A0000030","entropic chain"],["IDPO%3A0000003","molten globule"],["IDPO%3A0000014","order to disorder"]],"b":[["alkaloids/methylarcyriarubin.yaml","methylarcyriarubin"],["alkaloids/staurosporine-2.yaml","staurosporine"],["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"DOI:10.1023/B","l":"","na":31,"nb":3,"a":[["RHEA%3A14581","2 monodehydro-L-ascorbate radical + NADH + H(+) = 2 L-ascorbate + NAD(+)"],["RHEA%3A10780","(2R)-2-hydroxy-3-(4-hydroxyphenyl)propanoate + NAD(+) = 3-(4-hydroxyphenyl)pyruvate + NADH + H(+)"],["RHEA%3A10776","(2R)-2-hydroxy-3-(4-hydroxyphenyl)propanoate + NADP(+) = 3-(4-hydroxyphenyl)pyruvate + NADPH + H(+)"],["RHEA%3A57408","(2R)-3-(3,4-dihydroxyphenyl)lactate + NAD(+) = 3-(3,4-dihydroxyphenyl)pyruvate + NADH + H(+)"],["RHEA%3A57704","(2R)-3-(3,4-dihydroxyphenyl)lactate + NADP(+) = 3-(3,4-dihydroxyphenyl)pyruvate + NADPH + H(+)"],["RHEA%3A37923","(9Z,12Z,15Z)-octadecatrienoate + O2 = (8E,10S,12Z,15Z)-10-hydroperoxyoctadeca-8,12,15-trienoate"]],"b":[["alkaloids/pyochelin-i.yaml","pyochelin I"],["carbohydrates/tobramycin.yaml","tobramycin"],["polyketides/peloruside-a.yaml","peloruside A"]]},{"id":"NCBITaxon:33178","l":"Aspergillus terreus","na":3,"nb":22,"a":[["Pfam%3APF28386","BfoA family C-terminal domain"],["Pfam%3APF28387","BfoA N-terminal domain"],["Pfam%3APF12351","Ca2+ regulator and membrane fusion protein Fig1"]],"b":[["alkaloids/asterriquinone-ct5.yaml","asterriquinone CT5"],["alkaloids/cytochalasin-e.yaml","cytochalasin E"],["alkaloids/dihydroisoflavipucine.yaml","dihydroisoflavipucine"],["alkaloids/terrequinone-a.yaml","terrequinone A"],["amino_acids_and_peptides/valactamide-a.yaml","valactamide A"],["polyketides/citreoviridin.yaml","citreoviridin"]]},{"id":"NCBITaxon:332648","l":"Botrytis cinerea B05.10","na":3,"nb":21,"a":[["Pfam%3APF01670","Glycosyl hydrolase family 12"],["PROSITE%3APS00776","Glycosyl hydrolases family 11 (GH11) active site signature 1"],["PROSITE%3APS00777","Glycosyl hydrolases family 11 (GH11) active site signature 2"]],"b":[["terpenoids/1-epibotrydial.yaml","1-epibotrydial"],["terpenoids/10-dehydroxy-dihydrobotrydialone.yaml","10-dehydroxy dihydrobotrydialone"],["terpenoids/10-epi-dihydrobotrydial.yaml","10-epi-dihydrobotrydial"],["terpenoids/10-oxo-dihydrobotrydial.yaml","10-Oxo-dihydrobotrydial"],["terpenoids/10-oxodehydrodihydrobotrydial.yaml","10-Oxodehydrodihydrobotrydial"],["terpenoids/10-oxodihydrobotry-1-9-4-5-diendial.yaml","10-Oxodihydrobotry-1(9),4(5)-diendial"]]},{"id":"NCBITaxon:54571","l":"Streptomyces venezuelae","na":3,"nb":21,"a":[["Pfam%3APF08990","Erythronolide synthase docking domain"],["TED%3AAF-A0A5P2CQV7-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A5P2CQV7-F1-model_v4_TED02"],["TED%3AAF-A0A5P2C5X4-F1-model_v4_TED01","TED novel fold AF-A0A5P2C5X4-F1-model_v4_TED01"]],"b":[["alkaloids/anthelvencin-a.yaml","anthelvencin A"],["alkaloids/anthelvencin-b.yaml","anthelvencin B"],["alkaloids/anthelvencin-c.yaml","anthelvencin C"],["alkaloids/chloramphenicol.yaml","chloramphenicol"],["alkaloids/corynecin-ii.yaml","corynecin II"],["alkaloids/gaburedin-d.yaml","gaburedin D"]]},{"id":"UniProt:P22303","l":"","na":21,"nb":3,"a":[["ComplexPortal%3ACPX-10631","-"],["ComplexPortal%3ACPX-11637","-"],["ComplexPortal%3ACPX-12676","-"],["ComplexPortal%3ACPX-14124","-"],["ComplexPortal%3ACPX-18577","-"],["ComplexPortal%3ACPX-24024","-"]],"b":[["alkaloids/huperzine-a.yaml","huperzine A"],["alkaloids/physostigmine.yaml","physostigmine"],["unclassified/aflatoxin-b1.yaml","aflatoxin B1"]]},{"id":"NCBITaxon:332952","l":"Aspergillus flavus NRRL3357","na":3,"nb":20,"a":[["Pfam%3APF10014","2OG-Fe dioxygenase"],["Pfam%3APF22041","Glutathione S-transferase, C-terminal domain"],["Pfam%3APF08493","Aflatoxin regulatory protein"]],"b":[["alkaloids/actinopolymorphol-c.yaml","actinopolymorphol C"],["alkaloids/c-3-sulfonylated-derivative.yaml","C-3 sulfonylated derivative"],["alkaloids/imizoquin-c.yaml","imizoquin C"],["alkaloids/imizoquin-d.yaml","imizoquin D"],["alkaloids/leporin-b.yaml","leporin B"],["alkaloids/n-n-dioxide-containing-derivate.yaml","N,N-dioxide containing derivate"]]},{"id":"NCBITaxon:3847","l":"Glycine max","na":16,"nb":3,"a":[["Pfam%3APF02095","Extensin-like protein"],["Pfam%3APF00477","Small hydrophilic plant seed protein"],["IDPO%3A0000013","pre-molten globule to order"],["Pfam%3APF08027","Albumin I chain b"],["Pfam%3APF10539","Development and cell death domain"],["Pfam%3APF03386","Early nodulin 93 ENOD93 protein"]],"b":[["alkaloids/biotin.yaml","biotin"],["amino_acids_and_peptides/citrulline.yaml","citrulline"],["amino_acids_and_peptides/n-acetyltryptophan.yaml","N-acetyltryptophan"]]},{"id":"NCBITaxon:306","l":"Pseudomonas sp.","na":3,"nb":13,"a":[["Pfam%3APF14864","Alkyl sulfatase C-terminal"],["Pfam%3APF13816","Haem-containing dehydratase"],["Pfam%3APF14863","Alkyl sulfatase dimerisation"]],"b":[["unclassified/bananamide-d.yaml","bananamide D"],["unclassified/bananamide-e.yaml","bananamide E"],["unclassified/bananamide-f.yaml","bananamide F"],["unclassified/bananamide-g.yaml","bananamide G"],["unclassified/lokisin.yaml","lokisin"],["unclassified/pseudodesmin-a.yaml","pseudodesmin A"]]},{"id":"NCBITaxon:54","l":"Nannocystis exedens","na":13,"nb":3,"a":[["TED%3AAF-A0A1I2A5Z6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1I2A5Z6-F1-model_v4_TED01"],["TED%3AAF-A0A1I2FM38-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A1I2FM38-F1-model_v4_TED02"],["TED%3AAF-A0A1I2H0F9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1I2H0F9-F1-model_v4_TED01"],["TED%3AAF-A0A831ZMD9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A831ZMD9-F1-model_v4_TED01"],["TED%3AAF-A0A1I1T6U3-F1-model_v4_TED01","TED novel fold AF-A0A1I1T6U3-F1-model_v4_TED01"],["TED%3AAF-A0A1I1XLT5-F1-model_v4_TED02","TED novel fold AF-A0A1I1XLT5-F1-model_v4_TED02"]],"b":[["polyketides/phenylnannolone-a.yaml","phenylnannolone A"],["polyketides/phenylnannolone-b.yaml","phenylnannolone B"],["polyketides/phenylnannolone-c.yaml","phenylnannolone C"]]},{"id":"NCBITaxon:451804","l":"Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10)","na":11,"nb":3,"a":[["Pfam%3APF28347","ACE1 small beta sheet domain"],["Pfam%3APF28329","Zinc finger transcription factor ace1 N-terminal domain"],["Pfam%3APF11001","YDR124W-like, helical bundle domain"],["Pfam%3APF28457","Probable beta-glucosidase btgE N-terminal domain"],["Pfam%3APF13373","DSC E3 ubiquitin ligase complex subunit 3, C-terminal domain"],["Pfam%3APF10302","DSC E3 ubiquitin ligase complex subunit 3, ubiquitin-like domain"]],"b":[["terpenoids/21-h-hopane-3beta-22-diol.yaml","21-β-H-hopane-3beta, 22-diol"],["terpenoids/compound-3-3.yaml","compound 3"],["terpenoids/fumihopaside-a.yaml","fumihopaside A"]]},{"id":"NCBITaxon:5053","l":"Aspergillus aculeatus","na":3,"nb":11,"a":[["Pfam%3APF14683","Polysaccharide lyase family 4, domain III"],["Pfam%3APF14686","Polysaccharide lyase family 4, domain II"],["Pfam%3APF01670","Glycosyl hydrolase family 12"]],"b":[["alkaloids/acurin-a.yaml","acurin A"],["polyketides/secalonic-acid-a.yaml","Secalonic acid A"],["terpenoids/aculene-a.yaml","aculene A"],["terpenoids/aculene-b.yaml","aculene B"],["terpenoids/aculene-c.yaml","aculene C"],["terpenoids/aculene-d.yaml","aculene D"]]},{"id":"UniProt:Q8WZA2","l":"","na":3,"nb":10,"a":[["ComplexPortal%3ACPX-12363","-"],["CDD%3Acd04437","DEP_Epac"],["CATH%3A1.10.8.1240","CATH homologous superfamily 1.10.8.1240"]],"b":[["alkaloids/8-azaguanine.yaml","8-azaguanine"],["alkaloids/psilocybin.yaml","psilocybin"],["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["amino_acids_and_peptides/actinonin.yaml","actinonin"],["amino_acids_and_peptides/thiostrepton.yaml","thiostrepton"],["carbohydrates/tobramycin.yaml","tobramycin"]]},{"id":"UniProt:Q9BV86","l":"","na":10,"nb":3,"a":[["ComplexPortal%3ACPX-14881","-"],["ComplexPortal%3ACPX-15959","-"],["ComplexPortal%3ACPX-20462","-"],["ComplexPortal%3ACPX-23498","-"],["GO%3A0071885","N-terminal protein N-methyltransferase activity"],["GO%3A0018013","N-terminal peptidyl-glycine methylation"]],"b":[["fatty_acids/trans-aconitic-acid.yaml","trans-aconitic acid"],["polyketides/chlortetracycline.yaml","chlortetracycline"],["polyketides/kojic-acid.yaml","kojic acid"]]},{"id":"NCBITaxon:1971","l":"Streptomyces noursei","na":3,"nb":8,"a":[["Pfam%3APF16715","Cyclodipeptide synthase"],["Pfam%3APF19585","Family of unknown function (DUF6092)"],["TED%3AAF-A0A2N8PAT0-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2N8PAT0-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/curacomycin.yaml","curacomycin"],["amino_acids_and_peptides/dechlorocuracomycin.yaml","dechlorocuracomycin"],["amino_acids_and_peptides/deimino-antipain.yaml","deimino-antipain"],["carbohydrates/streptothricin-f.yaml","streptothricin F"],["polyketides/nystatin-a1.yaml","nystatin A1"],["polyketides/nystatin.yaml","nystatin"]]},{"id":"NCBITaxon:4081","l":"Solanum lycopersicum","na":8,"nb":3,"a":[["IDPO%3A0000011","disorder to order"],["Pfam%3APF02977","Carboxypeptidase A inhibitor"],["Pfam%3APF26410","GH family 5 beta-mannosidase-like"],["Pfam%3APF02496","ABA/WDS induced protein"],["Pfam%3APF17302","Family of unknown function (DUF5351)"],["PROSITE%3APS00502","Polygalacturonase active site"]],"b":[["fatty_acids/falcarindiol.yaml","falcarindiol"],["terpenoids/lycosantalonol.yaml","lycosantalonol"],["terpenoids/phellandrene.yaml","β-phellandrene"]]},{"id":"NCBITaxon:331117","l":"Aspergillus fischeri NRRL 181","na":3,"nb":7,"a":[["Pfam%3APF23681","ATP-dependent rRNA helicase SPB4-like, C-terminal tail"],["Pfam%3APF16803","Fe-S cluster assembly protein DRE2 N-terminus"],["Pfam%3APF02012","BNR/Asp-box repeat"]],"b":[["terpenoids/compound-5.yaml","compound 5"],["terpenoids/compound-6-2.yaml","compound 6"],["terpenoids/compound-7a.yaml","compound 7a"],["terpenoids/compound-8-2.yaml","compound 8"],["terpenoids/sesterfisheric-acid.yaml","sesterfisheric acid"],["terpenoids/sesterfisherol.yaml","sesterfisherol"]]},{"id":"NCBITaxon:1028729","l":"Fusarium pseudograminearum CS3096","na":3,"nb":6,"a":[["Pfam%3APF26087","Domain of unknown function (DUF8032)"],["Pfam%3APF05704","Capsular polysaccharide synthesis protein"],["TED%3AAF-K3V788-F1-model_v4_TED02","TED novel fold AF-K3V788-F1-model_v4_TED02"]],"b":[["alkaloids/8-oxo-fusatin.yaml","8-oxo-fusatin"],["alkaloids/8-oxo-isopentenyladenine.yaml","8-oxo-isopentenyladenine"],["alkaloids/fusatin.yaml","fusatin"],["alkaloids/fusatinic-acid.yaml","fusatinic acid"],["unclassified/w493-a.yaml","W493 A"],["unclassified/w493-b.yaml","W493 B"]]},{"id":"NCBITaxon:292","l":"Burkholderia cepacia","na":6,"nb":3,"a":[["Pfam%3APF14525","AraC-binding-like domain"],["Pfam%3APF06139","BphX-like"],["Pfam%3APF13340","Putative transposase of IS4/5 family (DUF4096)"],["Pfam%3APF11794","4-hydroxyphenylacetate 3-hydroxylase N terminal"],["Pfam%3APF03241","4-hydroxyphenylacetate 3-hydroxylase C terminal"],["TED%3AAF-A0A4S3H3T1-F1-model_v4_TED02","TED novel fold AF-A0A4S3H3T1-F1-model_v4_TED02"]],"b":[["alkaloids/cepaciachelin.yaml","cepaciachelin"],["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["terpenoids/hopene.yaml","hopene"]]},{"id":"DOI:10.1038/s41589-020-0541-x","l":"","na":3,"nb":5,"a":[["RHEA%3A85075","augustate + 3 reduced [NADPH--hemoprotein reductase] + 3 O2 = medicagenate + 3 oxidized [NADPH--hemoprotein reductase] + 4 H2O + 4 H(+)"],["RHEA%3A85079","medicagenate + UDP-alpha-D-glucuronate = 3-O-(beta-D-glucuronosyl)-medicagenate + UDP + H(+)"],["RHEA%3A85071","oleanolate + reduced [NADPH--hemoprotein reductase] + O2 = augustate + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"]],"b":[["terpenoids/yossoside-i.yaml","Yossoside I"],["terpenoids/yossoside-ii.yaml","Yossoside II"],["terpenoids/yossoside-iii.yaml","Yossoside III"],["terpenoids/yossoside-iv.yaml","Yossoside IV"],["terpenoids/yossoside-v.yaml","Yossoside V"]]},{"id":"NCBITaxon:1833","l":"Rhodococcus erythropolis","na":5,"nb":3,"a":[["Pfam%3APF08028","Acyl-CoA dehydrogenase, C-terminal domain"],["Pfam%3APF13816","Haem-containing dehydratase"],["Pfam%3APF07858","Limonene-1,2-epoxide hydrolase catalytic domain"],["Pfam%3APF09663","Amidohydrolase ring-opening protein (Amido_AtzD_TrzD)"],["TED%3AAF-A0A401N7F7-F1-model_v4_TED02","TED novel fold AF-A0A401N7F7-F1-model_v4_TED02"]],"b":[["alkaloids/aurachin-re.yaml","aurachin RE"],["amino_acids_and_peptides/heterobactin-a.yaml","heterobactin A"],["amino_acids_and_peptides/heterobactin-s2.yaml","heterobactin S2"]]},{"id":"NCBITaxon:2021","l":"Thermobifida fusca","na":5,"nb":3,"a":[["Pfam%3APF00553","Cellulose binding domain"],["Pfam%3APF01341","Glycosyl hydrolases family 6"],["PROSITE%3APS00561","CBM2a (carbohydrate-binding type-2) domain signature"],["PROSITE%3APS00655","Glycosyl hydrolases family 6 signature 1"],["PROSITE%3APS00656","Glycosyl hydrolases family 6 signature 2"]],"b":[["amino_acids_and_peptides/fuscachelin-a.yaml","Fuscachelin A"],["amino_acids_and_peptides/fuscachelin-b.yaml","Fuscachelin B"],["amino_acids_and_peptides/fuscachelin-c.yaml","Fuscachelin C"]]},{"id":"NCBITaxon:3885","l":"Phaseolus vulgaris","na":3,"nb":5,"a":[["Pfam%3APF14829","Glycerol-3-phosphate acyltransferase N-terminal"],["PROSITE%3APS00281","Bowman-Birk serine protease inhibitors family signature"],["PROSITE%3APS00308","Legume lectins alpha-chain signature"]],"b":[["alkaloids/biotin.yaml","biotin"],["amino_acids_and_peptides/citrulline.yaml","citrulline"],["amino_acids_and_peptides/ectoine.yaml","ectoine"],["fatty_acids/itaconic-acid.yaml","itaconic acid"],["unclassified/orcinol.yaml","orcinol"]]},{"id":"NCBITaxon:556","l":"Dickeya chrysanthemi","na":5,"nb":3,"a":[["Pfam%3APF18390","Glycogen debranching enzyme C-terminal domain"],["Pfam%3APF25994","AprE, long alpha-helical hairpin"],["Pfam%3APF02974","Protease inhibitor Inh"],["Pfam%3APF03812","2-keto-3-deoxygluconate permease"],["Pfam%3APF09589","HrpA pilus formation protein"]],"b":[["amino_acids_and_peptides/chrysobactin.yaml","chrysobactin"],["amino_acids_and_peptides/dichrysobactin.yaml","dichrysobactin"],["unclassified/cyclic-trichrysobactin.yaml","cyclic trichrysobactin"]]},{"id":"NCBITaxon:571","l":"Klebsiella oxytoca","na":3,"nb":5,"a":[["Pfam%3APF27446","Uridylyltransferase GlnD fifth domain"],["PROSITE%3APS00896","LacY family proton/sugar symporters signature 1"],["PROSITE%3APS00897","LacY family proton/sugar symporters signature 2"]],"b":[["alkaloids/9-deoxy-tilivalline.yaml","9-deoxy tilivalline"],["alkaloids/dehydro-tilivalline.yaml","dehydro tilivalline"],["alkaloids/dihydroxy-dehydro-tilivalline.yaml","dihydroxy-dehydro tilivalline"],["alkaloids/dihydroxy-tilivalline.yaml","dihydroxy tilivalline"],["alkaloids/tilivalline.yaml","tilivalline"]]},{"id":"NCBITaxon:269800","l":"","na":4,"nb":3,"a":[["Pfam%3APF20628","Dyp-type peroxidase, C-terminal"],["Pfam%3APF04261","Dyp-type peroxidase, N-terminal"],["Pfam%3APF18374","Enolase N-terminal domain-like"],["PROSITE%3APS00909","Mandelate racemase / muconate lactonizing enzyme family signature 2"]],"b":[["amino_acids_and_peptides/fuscachelin-a.yaml","Fuscachelin A"],["amino_acids_and_peptides/fuscachelin-b.yaml","Fuscachelin B"],["amino_acids_and_peptides/fuscachelin-c.yaml","Fuscachelin C"]]},{"id":"NCBITaxon:306901","l":"","na":4,"nb":3,"a":[["Pfam%3APF07960","CBP4"],["TED%3AAF-Q2GNU1-F1-model_v4_TED01","TED highly-symmetric fold AF-Q2GNU1-F1-model_v4_TED01"],["TED%3AAF-Q2GZS7-F1-model_v4_TED01","TED novel fold AF-Q2GZS7-F1-model_v4_TED01"],["TED%3AAF-Q2H4N9-F1-model_v4_TED02","TED novel fold AF-Q2H4N9-F1-model_v4_TED02"]],"b":[["polyketides/11-epichaetomugilin-a.yaml","11-epichaetomugilin A"],["polyketides/chaetoviridin-e.yaml","chaetoviridin E"],["polyketides/shanorellin.yaml","shanorellin"]]},{"id":"NCBITaxon:33","l":"Myxococcus fulvus","na":4,"nb":3,"a":[["TED%3AAF-A0A511SVC1-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A511SVC1-F1-model_v4_TED01"],["TED%3AAF-A0A511SU64-F1-model_v4_TED01","TED novel fold AF-A0A511SU64-F1-model_v4_TED01"],["TED%3AAF-A0A511T2U3-F1-model_v4_TED02","TED novel fold AF-A0A511T2U3-F1-model_v4_TED02"],["TED%3AAF-A0A511T9F8-F1-model_v4_TED05","TED novel fold AF-A0A511T9F8-F1-model_v4_TED05"]],"b":[["unclassified/fulvuthiacene-a.yaml","Fulvuthiacene A"],["unclassified/fulvuthiacene-b.yaml","Fulvuthiacene B"],["unclassified/myxothiazol.yaml","myxothiazol"]]},{"id":"NCBITaxon:34305","l":"Lotus japonicus","na":4,"nb":3,"a":[["Pfam%3APF06241","Castor and Pollux, part of voltage-gated ion channel"],["Pfam%3APF23654","E3 ubiquitin-protein ligase LIN-like, ARM repeat"],["Pfam%3APF23628","Putative E3 ubiquitin-protein ligase LIN, ARM-like domain"],["Pfam%3APF23568","E3 ubiquitin-protein ligase LIN-like, ARM repeat"]],"b":[["amino_acids_and_peptides/linamarin.yaml","linamarin"],["amino_acids_and_peptides/lotaustralin.yaml","lotaustralin"],["terpenoids/lupeol.yaml","lupeol"]]},{"id":"NCBITaxon:392500","l":"","na":3,"nb":4,"a":[["Pfam%3APF23763","GLAA-B beta-barrel domain I"],["TED%3AAF-B1KH33-F1-model_v4_TED01","TED novel fold AF-B1KH33-F1-model_v4_TED01"],["TED%3AAF-B1KQT1-F1-model_v4_TED01","TED novel fold AF-B1KQT1-F1-model_v4_TED01"]],"b":[["fatty_acids/woodybactin-d.yaml","woodybactin D"],["unclassified/woodybactin-a.yaml","woodybactin A"],["unclassified/woodybactin-b.yaml","woodybactin B"],["unclassified/woodybactin-c.yaml","woodybactin C"]]},{"id":"NCBITaxon:5544","l":"Trichoderma harzianum","na":4,"nb":3,"a":[["Pfam%3APF00840","Glycosyl hydrolase family 7"],["Pfam%3APF12708","Rhamnogalacturonase A/epimerase, pectate lyase-like"],["TED%3AAF-A0A0F9XDU3-F1-model_v4_TED01","TED novel fold AF-A0A0F9XDU3-F1-model_v4_TED01"],["TED%3AAF-A0A0G0ASL4-F1-model_v4_TED01","TED novel fold AF-A0A0G0ASL4-F1-model_v4_TED01"]],"b":[["polyketides/1-2-dehydropenicillide.yaml","1,2-dehydropenicillide"],["polyketides/harziphilone.yaml","harziphilone"],["unclassified/harzianopyridone.yaml","harzianopyridone"]]},{"id":"NCBITaxon:655844","l":"","na":3,"nb":4,"a":[["Pfam%3APF07110","EthD domain"],["Pfam%3APF09421","Frequency clock protein"],["TED%3AAF-A0A0B2XHY6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A0B2XHY6-F1-model_v4_TED01"]],"b":[["alkaloids/swainsonine.yaml","swainsonine"],["unclassified/destruxin-a.yaml","destruxin A"],["unclassified/subglutinol-a.yaml","subglutinol A"],["unclassified/subglutinol-b.yaml","subglutinol B"]]},{"id":"NCBITaxon:1003195","l":"","na":3,"nb":3,"a":[["Pfam%3APF23169","Halogenase D"],["Pfam%3APF02655","ATP-grasp domain"],["Pfam%3APF14518","Iron-containing redox enzyme"]],"b":[["amino_acids_and_peptides/cattlecin.yaml","cattlecin"],["amino_acids_and_peptides/ethynylserine.yaml","β-ethynylserine"],["terpenoids/cattleyene.yaml","cattleyene"]]},{"id":"NCBITaxon:1282","l":"Staphylococcus epidermidis","na":3,"nb":3,"a":[["Pfam%3APF14028","Lantibiotic biosynthesis dehydratase C-term"],["Pfam%3APF08130","Type A lantibiotic family"],["Pfam%3APF04738","Lantibiotic dehydratase, N terminus"]],"b":[["amino_acids_and_peptides/epidermin.yaml","epidermin"],["amino_acids_and_peptides/epilancin-15x.yaml","epilancin 15x"],["amino_acids_and_peptides/pep5.yaml","pep5"]]},{"id":"NCBITaxon:1406","l":"Paenibacillus polymyxa","na":3,"nb":3,"a":[["Pfam%3APF03423","Carbohydrate binding domain (family 25)"],["Pfam%3APF03422","Carbohydrate binding module (family 6)"],["TED%3AAF-A0A7X5SGP7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A7X5SGP7-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/polymyxin-b.yaml","polymyxin B"],["amino_acids_and_peptides/polymyxin.yaml","polymyxin"],["unclassified/fusaricidin-b.yaml","fusaricidin B"]]},{"id":"NCBITaxon:1961","l":"Streptomyces virginiae","na":3,"nb":3,"a":[["Pfam%3APF03756","A-factor biosynthesis hotdog domain"],["Pfam%3APF19328","2,4-diaminopentanoate dehydrogenase C-terminal domain"],["PROSITE%3APS01014","Transcription termination factor nusG signature"]],"b":[["alkaloids/endophenazine-a.yaml","endophenazine A"],["polyketides/monensin.yaml","monensin"],["unclassified/virginiamycin-s1.yaml","virginiamycin S1"]]},{"id":"NCBITaxon:384676","l":"","na":3,"nb":3,"a":[["Pfam%3APF18063","Beta barrel Pore-forming domain"],["Pfam%3APF08548","Peptidase M10 serralysin C terminal"],["TED%3AAF-Q1I2P2-F1-model_v4_TED01","TED novel fold AF-Q1I2P2-F1-model_v4_TED01"]],"b":[["alkaloids/labradorin-1.yaml","labradorin 1"],["alkaloids/labradorin-2.yaml","labradorin 2"],["alkaloids/pimprinine.yaml","pimprinine"]]},{"id":"NCBITaxon:448385","l":"","na":3,"nb":3,"a":[["TED%3AAF-A9FYP8-F1-model_v4_TED01","TED highly-symmetric fold AF-A9FYP8-F1-model_v4_TED01"],["TED%3AAF-A9G932-F1-model_v4_TED01","TED highly-symmetric fold AF-A9G932-F1-model_v4_TED01"],["TED%3AAF-A9F9E5-F1-model_v4_TED01","TED novel fold AF-A9F9E5-F1-model_v4_TED01"]],"b":[["polyketides/etnangien.yaml","etnangien"],["polyketides/soraphen-a.yaml","soraphen A"],["terpenoids/eremophilene.yaml","(+)-eremophilene"]]},{"id":"NCBITaxon:45133","l":"Lasiodiplodia theobromae","na":3,"nb":3,"a":[["TED%3AAF-A0A5N5DCC3-F1-model_v4_TED01","TED novel fold AF-A0A5N5DCC3-F1-model_v4_TED01"],["TED%3AAF-A0A5N5DDT9-F1-model_v4_TED01","TED novel fold AF-A0A5N5DDT9-F1-model_v4_TED01"],["TED%3AAF-A0A5N5DLG2-F1-model_v4_TED02","TED novel fold AF-A0A5N5DLG2-F1-model_v4_TED02"]],"b":[["polyketides/lasiodiplodin.yaml","lasiodiplodin"],["shikimates_and_phenylpropanoids/6-methylsalicylic-acid.yaml","6-methylsalicylic acid"],["shikimates_and_phenylpropanoids/mellein.yaml","(-)-Mellein"]]},{"id":"NCBITaxon:454130","l":"Aspergillus calidoustus","na":3,"nb":3,"a":[["Pfam%3APF28380","Sesquiterpene cyclase astC-like C-terminal domain"],["TED%3AAF-A0A0U5FXA2-F1-model_v4_TED01","TED novel fold AF-A0A0U5FXA2-F1-model_v4_TED01"],["TED%3AAF-A0A0U5GJ59-F1-model_v4_TED01","TED novel fold AF-A0A0U5GJ59-F1-model_v4_TED01"]],"b":[["terpenoids/calidoustene-a.yaml","calidoustene A"],["terpenoids/calidoustene-b.yaml","calidoustene B"],["terpenoids/calidoustene-c.yaml","calidoustene C"]]},{"id":"UniProt:P59594","l":"","na":3,"nb":3,"a":[["ComplexPortal%3ACPX-7088","SARS-CoV uncleaved Spike protein complex"],["proteintraitsmech%3AMEROPS_CLEAVAGE_S01_247","epitheliasin cleavage specificity"],["IDPO%3A0000048","limited proteolysis display site"]],"b":[["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["amino_acids_and_peptides/linaclotide.yaml","linaclotide"],["carbohydrates/kanamycin-a.yaml","kanamycin A"]]},{"id":"NCBITaxon:559292","l":"Saccharomyces cerevisiae (strain ATCC 204508 / S288c)","na":14483,"nb":2,"a":[["EC%3A1.14.18.-","With another compound as one donor, and incorporation of one atom of oxygen"],["EC%3A1.16.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.18.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.2.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.5.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.8.-.-","Acting on a sulfur group of donors"]],"b":[["polyketides/kojic-acid.yaml","kojic acid"],["polyketides/radicicol.yaml","radicicol"]]},{"id":"NCBITaxon:224308","l":"Bacillus subtilis (strain 168)","na":11310,"nb":2,"a":[["EC%3A1.1.-.-","Acting on the CH-OH group of donors"],["EC%3A1.10.3.-","With oxygen as acceptor"],["EC%3A1.13.12.-","With incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)"],["EC%3A1.14.19.-","With oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water"],["EC%3A1.17.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.21.98.-","With other, known acceptors"]],"b":[["unclassified/corynebactin.yaml","corynebactin"],["unclassified/pulcherriminic-acid.yaml","pulcherriminic acid"]]},{"id":"UniProt:P37840","l":"","na":102,"nb":2,"a":[["ComplexPortal%3ACPX-22614","-"],["ComplexPortal%3ACPX-25548","-"],["GO%3A0030424","axon"],["GO%3A0043679","axon terminus"],["GO%3A0005938","cell cortex"],["GO%3A0030426","growth cone"]],"b":[["amino_acids_and_peptides/actinonin.yaml","actinonin"],["polyketides/sirolimus.yaml","sirolimus"]]},{"id":"NCBITaxon:93061","l":"Staphylococcus aureus (strain NCTC 8325 / PS 47)","na":47,"nb":2,"a":[["IDPO%3A0000033","flexible linker"],["Pfam%3APF03373","Octapeptide repeat"],["Pfam%3APF07694","5TMR of 5TMR-LYT"],["Pfam%3APF01757","Acyltransferase domain"],["Pfam%3APF18719","ArlS sensor domain"],["Pfam%3APF02216","B domain"]],"b":[["amino_acids_and_peptides/staphyloferrin-b.yaml","staphyloferrin B"],["unclassified/staphyloferrin-a.yaml","staphyloferrin A"]]},{"id":"UniProt:P00519","l":"","na":42,"nb":2,"a":[["EC%3A2.7.10.2","non-specific protein-tyrosine kinase"],["ComplexPortal%3ACPX-20158","-"],["ComplexPortal%3ACPX-24443","-"],["ComplexPortal%3ACPX-24492","-"],["ComplexPortal%3ACPX-25676","-"],["GO%3A0000405","bubble DNA binding"]],"b":[["alkaloids/staurosporine-2.yaml","staurosporine"],["polyketides/emodin.yaml","emodin"]]},{"id":"UniProt:P24941","l":"","na":34,"nb":2,"a":[["ComplexPortal%3ACPX-10673","-"],["ComplexPortal%3ACPX-11851","-"],["ComplexPortal%3ACPX-13027","-"],["ComplexPortal%3ACPX-15343","-"],["ComplexPortal%3ACPX-19796","-"],["ComplexPortal%3ACPX-21602","-"]],"b":[["alkaloids/k-252a-2.yaml","K-252a"],["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"NCBITaxon:1912","l":"Streptomyces hygroscopicus","na":2,"nb":29,"a":[["Pfam%3APF21168","Chorismatase FkbO/Hyg5-like, N-terminal"],["TED%3AAF-A0A1S6RUT8-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1S6RUT8-F1-model_v4_TED01"]],"b":[["alkaloids/9-methylstreptimidone.yaml","9-methylstreptimidone"],["alkaloids/indigoidine-2.yaml","indigoidine"],["alkaloids/staurosporine-2.yaml","staurosporine"],["amino_acids_and_peptides/cyclothiazomycin.yaml","cyclothiazomycin"],["amino_acids_and_peptides/eponemycin.yaml","eponemycin"],["amino_acids_and_peptides/himastatin.yaml","himastatin"]]},{"id":"UniProt:O15296","l":"","na":26,"nb":2,"a":[["ComplexPortal%3ACPX-11775","-"],["ComplexPortal%3ACPX-23490","-"],["ComplexPortal%3ACPX-25286","-"],["GO%3A0050473","arachidonate 15-lipoxygenase activity"],["GO%3A0036403","arachidonate 8(S)-lipoxygenase activity"],["GO%3A0016165","linoleate 13S-lipoxygenase activity"]],"b":[["amino_acids_and_peptides/polymyxin.yaml","polymyxin"],["polyketides/tautomycetin.yaml","tautomycetin"]]},{"id":"UniProt:P62937","l":"","na":26,"nb":2,"a":[["ComplexPortal%3ACPX-16615","-"],["ComplexPortal%3ACPX-25278","-"],["GO%3A1904813","ficolin-1-rich granule lumen"],["GO%3A0016018","cyclosporin A binding"],["GO%3A1904399","heparan sulfate binding"],["GO%3A0003755","peptidyl-prolyl cis-trans isomerase activity"]],"b":[["amino_acids_and_peptides/cyclosporin-a.yaml","cyclosporin A"],["amino_acids_and_peptides/sanglifehrin-a.yaml","sanglifehrin A"]]},{"id":"UniProt:P06276","l":"","na":23,"nb":2,"a":[["ComplexPortal%3ACPX-12760","-"],["ComplexPortal%3ACPX-18032","-"],["ComplexPortal%3ACPX-20651","-"],["ComplexPortal%3ACPX-21068","-"],["ComplexPortal%3ACPX-21174","-"],["ComplexPortal%3ACPX-21255","-"]],"b":[["alkaloids/huperzine-a.yaml","huperzine A"],["alkaloids/physostigmine.yaml","physostigmine"]]},{"id":"UniProt:P07203","l":"","na":21,"nb":2,"a":[["ComplexPortal%3ACPX-13707","-"],["ComplexPortal%3ACPX-15014","-"],["ComplexPortal%3ACPX-20814","-"],["ComplexPortal%3ACPX-20823","-"],["ComplexPortal%3ACPX-23329","-"],["ComplexPortal%3ACPX-23744","-"]],"b":[["shikimates_and_phenylpropanoids/ochratoxin-a.yaml","ochratoxin A"],["unclassified/beauvericin.yaml","beauvericin"]]},{"id":"UniProt:P63092","l":"","na":21,"nb":2,"a":[["GO%3A0005834","heterotrimeric G-protein complex"],["GO%3A0010856","adenylate cyclase activator activity"],["GO%3A0031748","D1 dopamine receptor binding"],["GO%3A0031683","G-protein beta/gamma-subunit complex binding"],["GO%3A0007190","activation of adenylate cyclase activity"],["GO%3A0038184","adenylate cyclase-activating G protein-coupled bile acid receptor signaling pathway"]],"b":[["alkaloids/4-hydroxy-2-quinolone.yaml","4-hydroxy-2-quinolone"],["polyketides/2-4-diacetylphloroglucinol.yaml","2,4-diacetylphloroglucinol"]]},{"id":"NCBITaxon:746128","l":"Aspergillus fumigatus","na":2,"nb":20,"a":[["Pfam%3APF07335","Fungal chitosanase of glycosyl hydrolase group 75"],["Pfam%3APF12296","Hydrophobic surface binding protein A"]],"b":[["alkaloids/fumigaclavine-c.yaml","fumigaclavine C"],["alkaloids/fumiquinazoline-a.yaml","fumiquinazoline A"],["alkaloids/fumiquinazoline-c.yaml","fumiquinazoline C"],["alkaloids/fumiquinazoline-d.yaml","fumiquinazoline D"],["alkaloids/hexadehydroastechrome.yaml","hexadehydroastechrome"],["carbohydrates/tobramycin.yaml","tobramycin"]]},{"id":"NCBITaxon:176299","l":"Agrobacterium fabrum (strain C58 / ATCC 33970)","na":17,"nb":2,"a":[["IDPO%3A0000031","flexible C-terminal tail"],["IDPO%3A0000032","flexible N-terminal tail"],["Pfam%3APF28403","Aconitase X second domain"],["Pfam%3APF28406","Aconitase X third domain"],["Pfam%3APF04412","Aconitase X first domain"],["Pfam%3APF01989","Aconitase X swivel domain"]],"b":[["amino_acids_and_peptides/fabrubactin-a.yaml","fabrubactin A"],["amino_acids_and_peptides/fabrubactin-b.yaml","fabrubactin B"]]},{"id":"NCBITaxon:455632","l":"Streptomyces griseus subsp. griseus NBRC 13350","na":2,"nb":17,"a":[["Pfam%3APF03756","A-factor biosynthesis hotdog domain"],["PROSITE%3APS01311","Prolipoprotein diacylglyceryl transferase signature"]],"b":[["alkaloids/grixazone-a.yaml","grixazone A"],["alkaloids/iminimycin-a.yaml","iminimycin A"],["alkaloids/iminimycin-b.yaml","iminimycin B"],["alkaloids/melanin.yaml","melanin"],["carbohydrates/streptomycin.yaml","streptomycin"],["fatty_acids/desferrioxamine-b.yaml","desferrioxamine B"]]},{"id":"NCBITaxon:1428","l":"Bacillus thuringiensis","na":16,"nb":2,"a":[["Pfam%3APF10014","2OG-Fe dioxygenase"],["Pfam%3APF28265","Lipoprotein N-acylation protein LnsA-like"],["Pfam%3APF16403","Bacterial surface protein, Ig-like domain"],["Pfam%3APF03944","delta endotoxin"],["Pfam%3APF03945","delta endotoxin, N-terminal domain"],["Pfam%3APF06355","Aegerolysin"]],"b":[["fatty_acids/trans-aconitic-acid.yaml","trans-aconitic acid"],["unclassified/andalusicin-a.yaml","andalusicin A"]]},{"id":"NCBITaxon:630","l":"Yersinia enterocolitica","na":16,"nb":2,"a":[["Pfam%3APF05932","Tir chaperone protein (CesT) family"],["Pfam%3APF17656","FlgA N-terminal domain"],["Pfam%3APF22200","ExsA N-terminal regulatory domain"],["Pfam%3APF05171","Haemin-degrading HemS.ChuX domain"],["Pfam%3APF07201","HrpJ-like domain"],["Pfam%3APF04391","Protein of unknown function (DUF533)"]],"b":[["alkaloids/yersiniabactin-2.yaml","yersiniabactin"],["alkaloids/yersiniabactin.yaml","yersiniabactin"]]},{"id":"DOI:10.1080/09168451.2018.1553605","l":"","na":15,"nb":2,"a":[["NCBIfam%3ANF041231","AfsR/SARP family transcriptional regulator BagI/FevR"],["NCBIfam%3ANF041224","bagremycin/ferroverdin biosynthesis 3,4-AHBA synthase BagC/FevH"],["NCBIfam%3ANF041221","bagremycin/ferroverdin biosynthesis copper chaperon BagZ/FevE"],["NCBIfam%3ANF041223","bagremycin/ferroverdin biosynthesis DhnA-type aldolase BagB/FevI"],["NCBIfam%3ANF041227","bagremycin/ferroverdin biosynthesis FAD-dependent oxygenase BagG/FevA2"],["NCBIfam%3ANF041226","bagremycin/ferroverdin biosynthesis FAD-dependent oxygenase BagK/FevA1"]],"b":[["shikimates_and_phenylpropanoids/bagremycin-a.yaml","bagremycin A"],["shikimates_and_phenylpropanoids/bagremycin-b.yaml","bagremycin B"]]},{"id":"NCBITaxon:1360","l":"Lactococcus lactis subsp. lactis","na":14,"nb":2,"a":[["Pfam%3APF08951","Bacteriocin immunity protein family"],["Pfam%3APF08998","Bacterial epsilon antitoxin"],["Pfam%3APF25887","LcnD-like, long helical bundle domain"],["Pfam%3APF14028","Lantibiotic biosynthesis dehydratase C-term"],["Pfam%3APF25940","LcnD-like, C-terminal domain"],["Pfam%3APF08129","Alpha/beta enterocin family"]],"b":[["amino_acids_and_peptides/lacticin-481.yaml","lacticin 481"],["amino_acids_and_peptides/nisin-a.yaml","nisin A"]]},{"id":"NCBITaxon:29488","l":"Photorhabdus luminescens","na":2,"nb":14,"a":[["Pfam%3APF02273","Acyl transferase"],["PROSITE%3APS00494","Bacterial luciferase subunits signature"]],"b":[["alkaloids/photobactin.yaml","photobactin"],["alkaloids/pzn5.yaml","PZN5"],["amino_acids_and_peptides/gamexpeptide-c.yaml","gamexpeptide C"],["amino_acids_and_peptides/glidobactin.yaml","glidobactin"],["amino_acids_and_peptides/luminmycin-a.yaml","luminmycin A"],["polyketides/photopyrone-a.yaml","photopyrone A"]]},{"id":"NCBITaxon:759273","l":"Colletotrichum higginsianum IMI 349063","na":2,"nb":14,"a":[["TED%3AAF-A0A1B7Y9H0-F1-model_v4_TED01","TED novel fold AF-A0A1B7Y9H0-F1-model_v4_TED01"],["TED%3AAF-H1V1S2-F1-model_v4_TED01","TED novel fold AF-H1V1S2-F1-model_v4_TED01"]],"b":[["shikimates_and_phenylpropanoids/colletorin-d-acid.yaml","Colletorin D acid"],["shikimates_and_phenylpropanoids/o-orsellinic-acid.yaml","o-orsellinic acid"],["unclassified/13-epi-higginsianin-c.yaml","13-epi-higginsianin C"],["unclassified/colletochlorin-a.yaml","Colletochlorin A"],["unclassified/colletochlorin-b.yaml","Colletochlorin B"],["unclassified/colletochlorin-d.yaml","Colletochlorin D"]]},{"id":"NCBITaxon:271848","l":"Burkholderia thailandensis E264","na":2,"nb":12,"a":[["Pfam%3APF12091","Protein of unknown function (DUF3567)"],["Pfam%3APF01075","Glycosyltransferase family 9 (heptosyltransferase)"]],"b":[["alkaloids/malleobactin-b.yaml","malleobactin B"],["alkaloids/malleobactin-d.yaml","malleobactin D"],["polyketides/malleicyprol.yaml","malleicyprol"],["polyketides/malleilactone.yaml","malleilactone"],["polyketides/thailandamide-lactone.yaml","thailandamide lactone"],["polyketides/thailandamide.yaml","thailandamide"]]},{"id":"NCBITaxon:1111077","l":"Claviceps purpurea 20.1","na":2,"nb":11,"a":[["Pfam%3APF28338","AclK C-terminal domain"],["TED%3AAF-M1W301-F1-model_v4_TED01","TED highly-symmetric fold AF-M1W301-F1-model_v4_TED01"]],"b":[["alkaloids/ergotamine.yaml","ergotamine"],["polyketides/clavorubin.yaml","Clavorubin"],["polyketides/endocrocin.yaml","endocrocin"],["polyketides/o-orsellinate-depside.yaml","o-orsellinate depside"],["polyketides/secalonic-acid-a.yaml","Secalonic acid A"],["polyketides/secalonic-acid-b.yaml","Secalonic acid B"]]},{"id":"NCBITaxon:470","l":"Acinetobacter baumannii","na":11,"nb":2,"a":[["Pfam%3APF22829","HphA C-terminal domain"],["Pfam%3APF22828","HphA N-terminal heme-binding domain"],["Pfam%3APF28205","Ciprofloxacin tolerance protein"],["Pfam%3APF19582","Solute-binding protein AdeT 1/2"],["PROSITE%3APS00337","Beta-lactamase class-D active site"],["Pfam%3APF24575","Surface lipoprotein assembly modifier, N-terminal TPR repeats"]],"b":[["alkaloids/acinetobactin.yaml","acinetobactin"],["amino_acids_and_peptides/fimsbactin-a.yaml","fimsbactin A"]]},{"id":"UniProt:P11802","l":"","na":11,"nb":2,"a":[["ComplexPortal%3ACPX-10673","-"],["ComplexPortal%3ACPX-18434","-"],["ComplexPortal%3ACPX-20361","-"],["ComplexPortal%3ACPX-21602","-"],["ComplexPortal%3ACPX-26168","-"],["ComplexPortal%3ACPX-2010","Cyclin D1-CDK4 complex"]],"b":[["alkaloids/k-252a-2.yaml","K-252a"],["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"NCBITaxon:455432","l":"Nocardia terpenica","na":2,"nb":10,"a":[["TED%3AAF-A0A6G9ZDY9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A6G9ZDY9-F1-model_v4_TED01"],["TED%3AAF-A0A164L9V7-F1-model_v4_TED03","TED novel fold AF-A0A164L9V7-F1-model_v4_TED03"]],"b":[["amino_acids_and_peptides/nocapeptin-a.yaml","nocapeptin A"],["amino_acids_and_peptides/nocathioamide-a.yaml","nocathioamide A"],["polyketides/brasilinolide-a.yaml","brasilinolide A"],["polyketides/brasilinolide-b.yaml","brasilinolide B"],["polyketides/brasilinolide-c.yaml","brasilinolide C"],["polyketides/terpenomycin.yaml","terpenomycin"]]},{"id":"NCBITaxon:1159556","l":"Ustilaginoidea virens","na":2,"nb":9,"a":[["Pfam%3APF06966","Protein of unknown function (DUF1295)"],["TED%3AAF-A0A1B5L5W2-F1-model_v4_TED03","TED highly-symmetric fold AF-A0A1B5L5W2-F1-model_v4_TED03"]],"b":[["amino_acids_and_peptides/ustiloxin-b.yaml","ustiloxin B"],["polyketides/ustilaginoidin-a.yaml","ustilaginoidin A"],["polyketides/ustilaginoidin-d.yaml","ustilaginoidin D"],["polyketides/ustilaginoidin-e.yaml","ustilaginoidin E"],["polyketides/ustilaginoidin-f.yaml","ustilaginoidin F"],["polyketides/ustilaginoidin-g.yaml","ustilaginoidin G"]]},{"id":"NCBITaxon:158878","l":"Staphylococcus aureus (strain Mu50 / ATCC 700699)","na":9,"nb":2,"a":[["Pfam%3APF26317","Histidine racemase CntK N-terminal domain"],["Pfam%3APF13610","DDE domain"],["Pfam%3APF12199","Extracellular fibrinogen binding protein C terminal"],["Pfam%3APF26323","Staphylococcus aureus type VII secretion system substrate EsxC"],["Pfam%3APF19776","Family of unknown function (DUF6262)"],["Pfam%3APF27790","Poly-beta-1,6-N-acetyl-D-glucosamine synthesis protein IcaD"]],"b":[["amino_acids_and_peptides/feglymycin.yaml","feglymycin"],["amino_acids_and_peptides/staphylopine.yaml","staphylopine"]]},{"id":"NCBITaxon:57975","l":"Burkholderia thailandensis","na":2,"nb":9,"a":[["TED%3AAF-A0A7Z8HH79-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A7Z8HH79-F1-model_v4_TED01"],["TED%3AAF-A0A7Z8HK43-F1-model_v4_TED01","TED novel fold AF-A0A7Z8HK43-F1-model_v4_TED01"]],"b":[["fatty_acids/fr901464.yaml","FR901464"],["polyketides/malleicyprol.yaml","malleicyprol"],["polyketides/thailandamide-lactone.yaml","thailandamide lactone"],["polyketides/thailandamide.yaml","thailandamide"],["polyketides/thailanstatin-a.yaml","thailanstatin A"],["shikimates_and_phenylpropanoids/bactobolin.yaml","bactobolin"]]},{"id":"UniProt:P11309","l":"","na":9,"nb":2,"a":[["ComplexPortal%3ACPX-11827","-"],["ComplexPortal%3ACPX-16792","-"],["ComplexPortal%3ACPX-21719","-"],["ComplexPortal%3ACPX-26168","-"],["GO%3A1905062","positive regulation of cardioblast proliferation"],["GO%3A1905701","positive regulation of xenobiotic detoxification by transmembrane export across the plasma membrane"]],"b":[["alkaloids/k-252a-2.yaml","K-252a"],["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"DOI:10.1021/cb400541z","l":"","na":8,"nb":2,"a":[["RHEA%3A73919","2-(2,4-dihydroxy-6-oxidobenzoyl)-5-hydroxy-3-methylbenzenolate + H(+) = norlichexanthone + H2O"],["RHEA%3A73923","2-(2,4-dihydroxy-6-oxidobenzoyl)-5-hydroxy-3-methylbenzenolate + S-adenosyl-L-methionine = griseophenone D + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A73915","6 malonyl-CoA + acetyl-CoA + 4 H(+) = 2-(2,4-dihydroxy-6-oxidobenzoyl)-5-hydroxy-3-methylbenzenolate + 6 CO2 + 7 CoA + H2O"],["RHEA%3A73943","dehydrogriseofulvin + NADPH + H(+) = griseofulvin + NADP(+)"],["RHEA%3A73939","desmethyl-dehydrogriseofulvin + S-adenosyl-L-methionine = dehydrogriseofulvin + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A73935","griseophenone B + reduced [NADPH--hemoprotein reductase] + O2 + H(+) = desmethyl-dehydrogriseofulvin + oxidized [NADPH--hemoprotein reductase] + 2 H2O"]],"b":[["polyketides/epidechlorogriseofulvin.yaml","epidechlorogriseofulvin"],["polyketides/griseofulvin.yaml","griseofulvin"]]},{"id":"NCBITaxon:1404","l":"Priestia megaterium","na":8,"nb":2,"a":[["Pfam%3APF01890","Cobalamin synthesis G C-terminus"],["Pfam%3APF11761","Cobalamin biosynthesis central region"],["Pfam%3APF11760","Cobalamin synthesis G N-terminal"],["Pfam%3APF02570","Precorrin-8X methylmutase"],["PROSITE%3APS00304","Small, acid-soluble spore proteins, alpha/beta type, signature 1"],["PROSITE%3APS00684","Small, acid-soluble spore proteins, alpha/beta type, signature 2"]],"b":[["alkaloids/schizokinen.yaml","schizokinen"],["carbohydrates/oxetanocin-a.yaml","oxetanocin A"]]},{"id":"NCBITaxon:303698","l":"Penicillium steckii","na":2,"nb":8,"a":[["TED%3AAF-A0A1V6TCF9-F1-model_v4_TED03","TED highly-symmetric fold AF-A0A1V6TCF9-F1-model_v4_TED03"],["TED%3AAF-A0A1V6U0I0-F1-model_v4_TED02","TED novel fold AF-A0A1V6U0I0-F1-model_v4_TED02"]],"b":[["unclassified/adametizine-a.yaml","adametizine A"],["unclassified/fa2097.yaml","FA2097"],["unclassified/outovirin-a.yaml","outovirin A"],["unclassified/outovirin-c.yaml","outovirin C"],["unclassified/penigainamide-a.yaml","penigainamide A"],["unclassified/penigainamide-b.yaml","penigainamide B"]]},{"id":"DOI:10.1073/pnas.1501124112","l":"","na":2,"nb":7,"a":[["NCBIfam%3ANF039717","DUF6292 family protein"],["InterPro%3AIPR046259","Domain of unknown function DUF6292"]],"b":[["amino_acids_and_peptides/clarexpoxcin-a.yaml","Clarexpoxcin A"],["amino_acids_and_peptides/clarexpoxcin-b.yaml","Clarexpoxcin B"],["amino_acids_and_peptides/clarexpoxcin-c.yaml","Clarexpoxcin C"],["amino_acids_and_peptides/clarexpoxcin-d.yaml","Clarexpoxcin D"],["amino_acids_and_peptides/clarexpoxcin-e.yaml","Clarexpoxcin E"],["polyketides/isofuranonaphthoquinone-c.yaml","Isofuranonaphthoquinone C"]]},{"id":"NCBITaxon:119927","l":"Alternaria tenuissima","na":7,"nb":2,"a":[["TED%3AAF-A0A4Q4MR18-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4Q4MR18-F1-model_v4_TED01"],["TED%3AAF-A0A4Q4M1N1-F1-model_v4_TED01","TED novel fold AF-A0A4Q4M1N1-F1-model_v4_TED01"],["TED%3AAF-A0A4Q4M2G6-F1-model_v4_TED01","TED novel fold AF-A0A4Q4M2G6-F1-model_v4_TED01"],["TED%3AAF-A0A4Q4MJL0-F1-model_v4_TED01","TED novel fold AF-A0A4Q4MJL0-F1-model_v4_TED01"],["TED%3AAF-A0A4Q4PGY1-F1-model_v4_TED01","TED novel fold AF-A0A4Q4PGY1-F1-model_v4_TED01"],["TED%3AAF-A0A4Q4RTT0-F1-model_v4_TED01","TED novel fold AF-A0A4Q4RTT0-F1-model_v4_TED01"]],"b":[["polyketides/patulin.yaml","patulin"],["polyketides/solanapyrone-a.yaml","solanapyrone A"]]},{"id":"NCBITaxon:1279085","l":"Fusarium fujikuroi IMI 58289","na":2,"nb":7,"a":[["Pfam%3APF12585","Virulence factor CipC-like"],["PROSITE%3APS00982","Bacterial-type phytoene dehydrogenase signature"]],"b":[["polyketides/bikaverin.yaml","bikaverin"],["polyketides/fujikurin-c.yaml","fujikurin C"],["polyketides/fujikurin-d.yaml","fujikurin D"],["polyketides/gibepyrone-a.yaml","gibepyrone A"],["terpenoids/acorenol.yaml","α-acorenol"],["terpenoids/koraiol.yaml","koraiol"]]},{"id":"NCBITaxon:1380566","l":"Pochonia chlamydosporia 170","na":2,"nb":7,"a":[["TED%3AAF-A0A179FUG8-F1-model_v4_TED01","TED novel fold AF-A0A179FUG8-F1-model_v4_TED01"],["TED%3AAF-A0A179FWH3-F1-model_v4_TED01","TED novel fold AF-A0A179FWH3-F1-model_v4_TED01"]],"b":[["polyketides/monocillin-ii.yaml","monocillin II"],["polyketides/monocillin-iv.yaml","monocillin IV"],["polyketides/monocillin-v.yaml","monocillin V"],["polyketides/monocillin-vi.yaml","monocillin VI"],["polyketides/monocillin-vii.yaml","monocillin VII"],["polyketides/monorden-d.yaml","monorden D"]]},{"id":"NCBITaxon:358","l":"Agrobacterium tumefaciens","na":7,"nb":2,"a":[["Pfam%3APF19443","DAHL domain"],["Pfam%3APF03135","CagE, TrbE, VirB family, component of type IV transporter system"],["Pfam%3APF03524","Conjugal transfer protein"],["Pfam%3APF27439","Chaperone protein DnaJ C-terminal region"],["Pfam%3APF10907","Protein of unknown function (DUF2749)"],["PROSITE%3APS00662","Bacterial type II secretion system protein E signature"]],"b":[["alkaloids/agrobactin.yaml","agrobactin"],["amino_acids_and_peptides/aztreonam.yaml","aztreonam"]]},{"id":"DOI:10.1021/jacs.5b08319","l":"","na":2,"nb":6,"a":[["RHEA%3A54068","(2E,6E,10E,14E)-geranylfarnesyl diphosphate + H2O = sesterfisherol + diphosphate"],["RHEA%3A78407","sesterfisherol + 3 reduced [NADPH--hemoprotein reductase] + 3 O2 = sesterfisherate + 3 oxidized [NADPH--hemoprotein reductase] + 4 H2O + 4 H(+)"]],"b":[["terpenoids/compound-5.yaml","compound 5"],["terpenoids/compound-6-2.yaml","compound 6"],["terpenoids/compound-7a.yaml","compound 7a"],["terpenoids/compound-8-2.yaml","compound 8"],["terpenoids/sesterfisheric-acid.yaml","sesterfisheric acid"],["terpenoids/sesterfisherol.yaml","sesterfisherol"]]},{"id":"NCBITaxon:1421","l":"Lysinibacillus sphaericus","na":6,"nb":2,"a":[["Pfam%3APF16654","Diaminopimelic acid dehydrogenase C-terminal domain"],["Pfam%3APF03744","6-carboxyhexanoate--CoA ligase"],["PROSITE%3APS00836","Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1"],["PROSITE%3APS00837","Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2"],["TED%3AAF-A0A2S5D092-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2S5D092-F1-model_v4_TED01"],["TED%3AAF-A0A2S0JW09-F1-model_v4_TED01","TED novel fold AF-A0A2S0JW09-F1-model_v4_TED01"]],"b":[["alkaloids/biotin.yaml","biotin"],["carbohydrates/2-amino-2-deoxyadenosine.yaml","2'-amino-2'-deoxyadenosine"]]},{"id":"NCBITaxon:1894","l":"Kitasatospora aureofaciens","na":2,"nb":6,"a":[["Pfam%3APF01933","2-phospho-L-lactate transferase CofD"],["TED%3AAF-A0A1E7NF13-F1-model_v4_TED01","TED novel fold AF-A0A1E7NF13-F1-model_v4_TED01"]],"b":[["fatty_acids/triacsin-c.yaml","triacsin C"],["polyketides/auricin.yaml","auricin"],["polyketides/chlortetracycline.yaml","chlortetracycline"],["polyketides/lipomycin.yaml","α-lipomycin"],["polyketides/oxytetracycline.yaml","oxytetracycline"],["polyketides/venturicidin-a.yaml","venturicidin A"]]},{"id":"NCBITaxon:321","l":"Pseudomonas syringae pv. syringae","na":6,"nb":2,"a":[["Pfam%3APF03421","YopJ Serine/Threonine acetyltransferase"],["Pfam%3APF17914","HopA1 effector protein family"],["Pfam%3APF27361","HrcQa N-terminal domain"],["Pfam%3APF04877","HrpZ"],["PROSITE%3APS00314","Bacterial ice-nucleation proteins octamer repeat"],["Pfam%3APF00818","Ice nucleation protein repeat (2 copies)"]],"b":[["amino_acids_and_peptides/3-methylarginine.yaml","3-methylarginine"],["unclassified/syringopeptin-25a.yaml","syringopeptin 25A"]]},{"id":"NCBITaxon:52","l":"Chondromyces crocatus","na":2,"nb":6,"a":[["TED%3AAF-A0A0K1ER44-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A0K1ER44-F1-model_v4_TED01"],["TED%3AAF-A0A0K1E854-F1-model_v4_TED01","TED novel fold AF-A0A0K1E854-F1-model_v4_TED01"]],"b":[["polyketides/chondrochloren-a.yaml","chondrochloren A"],["polyketides/cmc-thuggacin-a.yaml","Cmc-thuggacin A"],["polyketides/crocacin.yaml","crocacin"],["shikimates_and_phenylpropanoids/ajudazol-a.yaml","ajudazol A"],["unclassified/chondramide-a.yaml","chondramide A"],["unclassified/cmc-thuggacin-b.yaml","Cmc-thuggacin B"]]},{"id":"DOI:10.1023/A","l":"","na":5,"nb":2,"a":[["RHEA%3A24780","C-13(2)-carboxypyropheophorbide a + H(+) = pyropheophorbide a + CO2"],["RHEA%3A24776","pheophorbide a + H2O = C-13(2)-carboxypyropheophorbide a + methanol"],["RHEA%3A32483","pheophorbide a + H2O + H(+) = pyropheophorbide a + methanol + CO2"],["InterPro%3AIPR006151","Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase"],["InterPro%3AIPR036559","Bacteriochlorophyll A superfamily"]],"b":[["carbohydrates/lincomycin.yaml","lincomycin"],["terpenoids/culmorin.yaml","culmorin"]]},{"id":"DOI:10.1128/AEM.01172-14","l":"","na":5,"nb":2,"a":[["RHEA%3A78823","(3R)-5-guanidino-3-methyl-2-oxopentanoate + L-aspartate = (3R)-3-methyl-L-arginine + oxaloacetate"],["RHEA%3A32663","5-guanidino-2-oxopentanoate + S-adenosyl-L-methionine = (3R)-5-guanidino-3-methyl-2-oxopentanoate + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A78819","L-arginine + 2-oxoglutarate = 5-guanidino-2-oxopentanoate + L-glutamate"],["NCBIfam%3ATIGR04543","2-ketoarginine methyltransferase"],["NCBIfam%3ATIGR04544","beta-methylarginine biosynthesis bifunctional aminotransferase"]],"b":[["carbohydrates/arginomycin.yaml","arginomycin"],["carbohydrates/blasticidin-s.yaml","blasticidin S"]]},{"id":"NCBITaxon:2795974","l":"Stieleria maiorica","na":2,"nb":5,"a":[["TED%3AAF-A0A5B9MHL4-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A5B9MHL4-F1-model_v4_TED02"],["TED%3AAF-A0A5B9MK37-F1-model_v4_TED03","TED novel fold AF-A0A5B9MK37-F1-model_v4_TED03"]],"b":[["alkaloids/stieleriacine-a1.yaml","stieleriacine A1"],["alkaloids/stieleriacine-a2.yaml","stieleriacine A2"],["fatty_acids/stieleriacine-c.yaml","stieleriacine C"],["unclassified/stieleriacine-b1.yaml","stieleriacine B1"],["unclassified/stieleriacine-b2.yaml","stieleriacine B2"]]},{"id":"NCBITaxon:305","l":"Ralstonia solanacearum","na":5,"nb":2,"a":[["Pfam%3APF14897","EpsG family"],["TED%3AAF-A0A7I8FQZ6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A7I8FQZ6-F1-model_v4_TED01"],["TED%3AAF-A0A7H1MI34-F1-model_v4_TED01","TED novel fold AF-A0A7H1MI34-F1-model_v4_TED01"],["TED%3AAF-A0A7I8FKL4-F1-model_v4_TED01","TED novel fold AF-A0A7I8FKL4-F1-model_v4_TED01"],["TED%3AAF-A0A850FKB0-F1-model_v4_TED01","TED novel fold AF-A0A850FKB0-F1-model_v4_TED01"]],"b":[["alkaloids/schizokinen.yaml","schizokinen"],["unclassified/micacocidin.yaml","micacocidin"]]},{"id":"NCBITaxon:394096","l":"Hyalangium minutum","na":5,"nb":2,"a":[["TED%3AAF-A0A085W4M3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A085W4M3-F1-model_v4_TED01"],["TED%3AAF-A0A085WRA7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A085WRA7-F1-model_v4_TED01"],["TED%3AAF-A0A085WWM4-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A085WWM4-F1-model_v4_TED01"],["TED%3AAF-A0A085W7S5-F1-model_v4_TED03","TED novel fold AF-A0A085W7S5-F1-model_v4_TED03"],["TED%3AAF-A0A085WH04-F1-model_v4_TED01","TED novel fold AF-A0A085WH04-F1-model_v4_TED01"]],"b":[["polyketides/nystatin-a1.yaml","nystatin A1"],["unclassified/myxochromide-d-2.yaml","myxochromide D"]]},{"id":"NCBITaxon:193462","l":"Streptomyces niveus","na":2,"nb":4,"a":[["Pfam%3APF16861","Carbamoyltransferase C-terminus"],["Pfam%3APF02543","Carbamoyltransferase N-terminus"]],"b":[["alkaloids/phenaziterpene-a.yaml","phenaziterpene A"],["carbohydrates/kanamycin-a.yaml","kanamycin A"],["shikimates_and_phenylpropanoids/cathomycin.yaml","cathomycin"],["unclassified/be-14106.yaml","BE-14106"]]},{"id":"NCBITaxon:394095","l":"Pyxidicoccus fallax","na":4,"nb":2,"a":[["TED%3AAF-A0A848LUK3-F1-model_v4_TED04","TED highly-symmetric fold AF-A0A848LUK3-F1-model_v4_TED04"],["TED%3AAF-A0A848LF16-F1-model_v4_TED01","TED novel fold AF-A0A848LF16-F1-model_v4_TED01"],["TED%3AAF-A0A848LFV1-F1-model_v4_TED03","TED novel fold AF-A0A848LFV1-F1-model_v4_TED03"],["TED%3AAF-A0A848LG55-F1-model_v4_TED01","TED novel fold AF-A0A848LG55-F1-model_v4_TED01"]],"b":[["polyketides/gulmirecin-a.yaml","gulmirecin A"],["unclassified/myxarylin.yaml","Myxarylin"]]},{"id":"NCBITaxon:426418","l":"Pyrenophora tritici-repentis Pt-1C-BFP","na":2,"nb":4,"a":[["TED%3AAF-B2VYP9-F1-model_v4_TED01","TED novel fold AF-B2VYP9-F1-model_v4_TED01"],["TED%3AAF-B2VZ40-F1-model_v4_TED02","TED novel fold AF-B2VZ40-F1-model_v4_TED02"]],"b":[["unclassified/triticone-a.yaml","triticone A"],["unclassified/triticone-b.yaml","triticone B"],["unclassified/triticone-c.yaml","triticone C"],["unclassified/triticone-f.yaml","triticone F"]]},{"id":"NCBITaxon:5270","l":"","na":4,"nb":2,"a":[["Pfam%3APF17445","Mating factor A1"],["Pfam%3APF24563","Mug60/KHD4 KH type I domain"],["Pfam%3APF01185","Fungal hydrophobin"],["Pfam%3APF07460","NUMOD3 motif"]],"b":[["fatty_acids/itaconic-acid.yaml","itaconic acid"],["fatty_acids/ustilagic-acid.yaml","ustilagic acid"]]},{"id":"NCBITaxon:55601","l":"Vibrio anguillarum","na":4,"nb":2,"a":[["Pfam%3APF17327","Acyl homoserine lactone synthase"],["PROSITE%3APS00949","Autoinducer synthase family signature"],["TED%3AAF-A0A241NLV5-F1-model_v4_TED03","TED novel fold AF-A0A241NLV5-F1-model_v4_TED03"],["TED%3AAF-A0A290PUC4-F1-model_v4_TED02","TED novel fold AF-A0A290PUC4-F1-model_v4_TED02"]],"b":[["alkaloids/anguibactin.yaml","anguibactin"],["amino_acids_and_peptides/vanchrobactin.yaml","vanchrobactin"]]},{"id":"NCBITaxon:666","l":"Vibrio cholerae","na":4,"nb":2,"a":[["Pfam%3APF01375","Heat-labile enterotoxin alpha chain"],["Pfam%3APF09101","Exotoxin A binding"],["Pfam%3APF09009","Exotoxin A catalytic"],["Pfam%3APF09102","Exotoxin A, targeting"]],"b":[["alkaloids/vibriobactin-2.yaml","vibriobactin"],["alkaloids/vibriobactin.yaml","vibriobactin"]]},{"id":"UniProt:P02829","l":"","na":4,"nb":2,"a":[["ComplexPortal%3ACPX-1276","HMC complex"],["GO%3A0006458","'de novo' protein folding"],["GO%3A0043248","proteasome assembly"],["GO%3A0070482","response to oxygen levels"]],"b":[["polyketides/monocillin-iv.yaml","monocillin IV"],["polyketides/radicicol.yaml","radicicol"]]},{"id":"DOI:10.1002/anie.201902910","l":"","na":3,"nb":2,"a":[["RHEA%3A67476","dimethylallyl diphosphate + L-glutamate = prekainate + diphosphate"],["RHEA%3A68224","prekainate + 2-oxoglutarate + O2 + H(+) = kainate lactone + succinate + CO2 + H2O"],["RHEA%3A67480","prekainate + 2-oxoglutarate + O2 = kainate + succinate + CO2 + H2O"]],"b":[["amino_acids_and_peptides/kainic-acid.yaml","kainic acid"],["terpenoids/kainic-acid-lactone.yaml","Kainic acid lactone"]]},{"id":"DOI:10.1016/j.chembiol.2013.07.004","l":"","na":2,"nb":3,"a":[["InterPro%3AIPR044086","Aldehyde dehydrogenase LUC3-like"],["NCBIfam%3ANF018234","alpha/beta hydrolase"]],"b":[["alkaloids/dihydrofusarin-c.yaml","dihydrofusarin C"],["alkaloids/epi-fusarin-c.yaml","epi-fusarin C"],["alkaloids/fusarin-d.yaml","fusarin D"]]},{"id":"DOI:10.3390/molecules24122267","l":"","na":3,"nb":2,"a":[["RHEA%3A64568","3-[(2E,4E,8S,10E,12Z)-4,8-dimethyltetradeca-2,4,10,12-tetraenoyl]-4-hydroxy-5-(4-hydroxyphenyl)-1,2-dihydropyridin-2-one = ilicicolin H"],["RHEA%3A64544","L-tyrosine + holo-[ACP] + 7 malonyl-CoA + acetyl-CoA + 8 AH2 + 2 S-adenosyl-L-methionine + ATP + 4 H(+) = N-[(4E,6E,10S,12Z,14E)-6,10-dimethyl-3-oxohexadeca-4,6,12,14-tetraenoyl]-L-tyrosyl-[ACP] + 8 A + AMP + 2 S-adenosyl-L-homocysteine + 7 CO2 + diphosphate + 8 CoA + 6 H2O"],["RHEA%3A64548","N-[(4E,6E,10S,12Z,14E)-6,10-dimethyl-3-oxohexadeca-4,6,12,14-tetraenoyl]-L-tyrosyl-[ACP] = (3E,5S)-3-[(2E,4E,8S,10E,12Z)-1-hydroxy-4,8-dimethyltetradeca-2,4,10,12-tetraen-1-ylidene]-5-[(4-hydroxyphenyl)methyl]pyrrolidine-2,4-dione + holo-[ACP] + H(+)"]],"b":[["alkaloids/ilicicolin-h.yaml","ilicicolin H"],["alkaloids/ilicicolin-j.yaml","ilicicolin J"]]},{"id":"NCBITaxon:1120925","l":"Acinetobacter bouvetii DSM 14964 = CIP 107468","na":2,"nb":3,"a":[["proteintraitsmech%3AELIFE109154_VibH_like","VibH-like metallophore standalone condensation enzyme family"],["TED%3AAF-N9C7M4-F1-model_v4_TED02","TED novel fold AF-N9C7M4-F1-model_v4_TED02"]],"b":[["alkaloids/butanochelin.yaml","butanochelin"],["alkaloids/pentanochelin.yaml","pentanochelin"],["alkaloids/propanochelin.yaml","propanochelin"]]},{"id":"NCBITaxon:1229662","l":"Pestalotiopsis fici (strain W106-1 / CGMCC3.15140)","na":3,"nb":2,"a":[["Pfam%3APF26087","Domain of unknown function (DUF8032)"],["Pfam%3APF07110","EthD domain"],["TED%3AAF-W3WKJ8-F1-model_v4_TED01","TED novel fold AF-W3WKJ8-F1-model_v4_TED01"]],"b":[["polyketides/naphthalene-1-3-8-triol.yaml","naphthalene-1,3,8-triol"],["polyketides/scytalone.yaml","scytalone"]]},{"id":"NCBITaxon:1309","l":"Streptococcus mutans","na":2,"nb":3,"a":[["Pfam%3APF02052","Gallidermin"],["Pfam%3APF04604","Type-A lantibiotic"]],"b":[["unclassified/leuvalin.yaml","leuvalin"],["unclassified/mutanocyclin.yaml","mutanocyclin"],["unclassified/tyrvalin.yaml","tyrvalin"]]},{"id":"NCBITaxon:1718","l":"Corynebacterium glutamicum","na":3,"nb":2,"a":[["TED%3AAF-A0A142EAM9-F1-model_v4_TED03","TED highly-symmetric fold AF-A0A142EAM9-F1-model_v4_TED03"],["TED%3AAF-A0A1Q3DTY6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1Q3DTY6-F1-model_v4_TED01"],["TED%3AAF-A0A1Q3DNE3-F1-model_v4_TED01","TED novel fold AF-A0A1Q3DNE3-F1-model_v4_TED01"]],"b":[["terpenoids/carotenoid-2.yaml","carotenoid"],["unclassified/corynebactin.yaml","corynebactin"]]},{"id":"NCBITaxon:1907","l":"Streptomyces glaucescens","na":2,"nb":3,"a":[["Pfam%3APF04673","Polyketide synthesis cyclase"],["Pfam%3APF04655","Aminoglycoside/hydroxyurea antibiotic resistance kinase"]],"b":[["carbohydrates/5-hydroxystreptomycin.yaml","5'-hydroxystreptomycin"],["carbohydrates/streptomycin.yaml","streptomycin"],["polyketides/tetracenomycin-c.yaml","tetracenomycin C"]]},{"id":"NCBITaxon:1940","l":"Streptomyces albireticuli NRRL B-1670","na":2,"nb":3,"a":[["TED%3AAF-A0A1Z2LD39-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1Z2LD39-F1-model_v4_TED01"],["TED%3AAF-A0A1Z2LBV3-F1-model_v4_TED01","TED novel fold AF-A0A1Z2LBV3-F1-model_v4_TED01"]],"b":[["fatty_acids/fuelimicin-b.yaml","fuelimicin B"],["fatty_acids/fuelimicin-c.yaml","fuelimicin C"],["fatty_acids/fuelimycin-a.yaml","fuelimycin A"]]},{"id":"NCBITaxon:240292","l":"Trichormus variabilis ATCC 29413","na":2,"nb":3,"a":[["Pfam%3APF18921","Cyanophycin synthase-like N-terminal domain"],["Pfam%3APF13619","KTSC domain"]],"b":[["unclassified/4-deoxygadusol.yaml","4-deoxygadusol"],["unclassified/mycosporine-glycine.yaml","mycosporine glycine"],["unclassified/shinorine.yaml","shinorine"]]},{"id":"NCBITaxon:344612","l":"Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107)","na":3,"nb":2,"a":[["Pfam%3APF28457","Probable beta-glucosidase btgE N-terminal domain"],["Pfam%3APF24438","IML1, N-terminal, fungi"],["Pfam%3APF25326","SRB8 ARM-like domain"]],"b":[["alkaloids/cytochalasin-e.yaml","cytochalasin E"],["alkaloids/cytochalasin-k.yaml","cytochalasin K"]]},{"id":"NCBITaxon:3635","l":"Gossypium hirsutum","na":3,"nb":2,"a":[["Pfam%3APF20452","Calmodulin binding protein C-terminal domain"],["Pfam%3APF20451","Calmodulin binding protein central domain"],["Pfam%3APF07887","Calmodulin binding protein-like N-terminal domain"]],"b":[["fatty_acids/butyrolactone.yaml","γ-butyrolactone"],["terpenoids/cadinene.yaml","(−)-δ-cadinene"]]},{"id":"NCBITaxon:394503","l":"","na":3,"nb":2,"a":[["Pfam%3APF03425","Carbohydrate binding domain (family 11)"],["PROSITE%3APS00812","Glycosyl hydrolases family 8 signature"],["Pfam%3APF01270","Glycosyl hydrolases family 8"]],"b":[["alkaloids/closthioamide.yaml","closthioamide"],["amino_acids_and_peptides/rc-aip1.yaml","Rc-AIP1"]]},{"id":"NCBITaxon:42236","l":"Streptomyces diastatochromogenes","na":2,"nb":3,"a":[["TED%3AAF-A0A233S9R2-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A233S9R2-F1-model_v4_TED01"],["TED%3AAF-A0A233SM76-F1-model_v4_TED01","TED novel fold AF-A0A233SM76-F1-model_v4_TED01"]],"b":[["carbohydrates/toyocamycin.yaml","toyocamycin"],["polyketides/concanamycin-a.yaml","concanamycin A"],["polyketides/polyketomycin.yaml","polyketomycin"]]},{"id":"NCBITaxon:44250","l":"Paenibacillus alvei","na":3,"nb":2,"a":[["PROSITE%3APS00481","Thiol-activated cytolysins signature"],["TED%3AAF-A0A383R9F4-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A383R9F4-F1-model_v4_TED01"],["TED%3AAF-A0A7Y4MLP7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A7Y4MLP7-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/colistin-a.yaml","colistin A"],["amino_acids_and_peptides/colistin-b.yaml","colistin B"]]},{"id":"NCBITaxon:4530","l":"Oryza sativa","na":2,"nb":3,"a":[["Pfam%3APF10839","Protein of unknown function (DUF2647)"],["PROSITE%3APS00937","Ribosomal protein L20 signature"]],"b":[["amino_acids_and_peptides/citrulline.yaml","citrulline"],["fatty_acids/nonadec-1-ene.yaml","nonadec-1-ene"],["terpenoids/phytocassane.yaml","phytocassane"]]},{"id":"NCBITaxon:474922","l":"Colletotrichum gloeosporioides","na":2,"nb":3,"a":[["Pfam%3APF28223","CAP22"],["PROSITE%3APS00155","Cutinase, serine active site"]],"b":[["unclassified/colletochlorin-a.yaml","Colletochlorin A"],["unclassified/colletotrichin.yaml","colletotrichin"],["unclassified/orcinol.yaml","orcinol"]]},{"id":"NCBITaxon:51201","l":"Streptomyces griseocarneus","na":3,"nb":2,"a":[["TED%3AAF-A0A3L8IG13-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A3L8IG13-F1-model_v4_TED01"],["TED%3AAF-A0A3L8KW22-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A3L8KW22-F1-model_v4_TED02"],["TED%3AAF-A0A8A3HJQ3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A8A3HJQ3-F1-model_v4_TED01"]],"b":[["alkaloids/pimprinine.yaml","pimprinine"],["carbohydrates/5-hydroxystreptomycin.yaml","5'-hydroxystreptomycin"]]},{"id":"NCBITaxon:536","l":"Chromobacterium violaceum","na":2,"nb":3,"a":[["TED%3AAF-A0A381EUD6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A381EUD6-F1-model_v4_TED01"],["TED%3AAF-A0A447THJ9-F1-model_v4_TED01","TED novel fold AF-A0A447THJ9-F1-model_v4_TED01"]],"b":[["alkaloids/violacein-2.yaml","violacein"],["alkaloids/violacein.yaml","violacein"],["unclassified/romidepsin.yaml","romidepsin"]]},{"id":"NCBITaxon:553","l":"Pantoea ananatis","na":3,"nb":2,"a":[["PROSITE%3APS00314","Bacterial ice-nucleation proteins octamer repeat"],["PROSITE%3APS00982","Bacterial-type phytoene dehydrogenase signature"],["TED%3AAF-A0A7H8I034-F1-model_v4_TED01","TED novel fold AF-A0A7H8I034-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/aerobactin.yaml","aerobactin"],["terpenoids/carotenoid-2.yaml","carotenoid"]]},{"id":"NCBITaxon:663","l":"Vibrio alginolyticus","na":3,"nb":2,"a":[["Pfam%3APF04205","FMN-binding domain"],["Pfam%3APF10795","Protein of unknown function (DUF2607)"],["TED%3AAF-A0A1W6U0N2-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1W6U0N2-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/vibrioferrin-2.yaml","vibrioferrin"],["amino_acids_and_peptides/vibrioferrin.yaml","vibrioferrin"]]},{"id":"NCBITaxon:67267","l":"Streptomyces alboflavus","na":3,"nb":2,"a":[["TED%3AAF-A0A1Z1WH37-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1Z1WH37-F1-model_v4_TED01"],["TED%3AAF-A0A291W4F3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A291W4F3-F1-model_v4_TED01"],["TED%3AAF-A0A291W5G3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A291W5G3-F1-model_v4_TED01"]],"b":[["alkaloids/thienodolin.yaml","thienodolin"],["terpenoids/2-methylisoborneol.yaml","2-methylisoborneol"]]},{"id":"DOI:10.1128/AEM.00478-08","l":"","na":2,"nb":2,"a":[["InterPro%3AIPR059857","Pneumocandin biosynthesis cluster protein B-like, C-terminal domain"],["NCBIfam%3ANF055577","Pneumocandin biosynthesis cluster protein B C-terminal domain"]],"b":[["polyketides/hypothemycin.yaml","hypothemycin"],["polyketides/radicicol.yaml","radicicol"]]},{"id":"NCBITaxon:1116229","l":"","na":2,"nb":2,"a":[["Pfam%3APF28402","Pneumocandin biosynthesis cluster protein B C-terminal domain"],["TED%3AAF-S3CJ96-F1-model_v4_TED01","TED novel fold AF-S3CJ96-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/pneumocandin-a0.yaml","pneumocandin A0"],["amino_acids_and_peptides/pneumocandin-b0.yaml","pneumocandin B0"]]},{"id":"NCBITaxon:1284","l":"Staphylococcus hyicus","na":2,"nb":2,"a":[["Pfam%3APF04650","YSIRK type signal peptide"],["PROSITE%3APS01123","Thermonuclease family signature 1"]],"b":[["amino_acids_and_peptides/staphyloferrin-b.yaml","staphyloferrin B"],["unclassified/staphyloferrin-a.yaml","staphyloferrin A"]]},{"id":"NCBITaxon:1365484","l":"","na":2,"nb":2,"a":[["Pfam%3APF11578","Protein of unknown function (DUF3237)"],["Pfam%3APF14269","Arylsulfotransferase (ASST)"]],"b":[["alkaloids/mycophenolic-acid-2.yaml","mycophenolic 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B1"]]},{"id":"UniProt:P11511","l":"","na":15,"nb":1,"a":[["ComplexPortal%3ACPX-11590","-"],["ComplexPortal%3ACPX-12153","-"],["ComplexPortal%3ACPX-14456","-"],["ComplexPortal%3ACPX-20752","-"],["ComplexPortal%3ACPX-20895","-"],["ComplexPortal%3ACPX-20967","-"]],"b":[["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"UniProt:P21964","l":"","na":15,"nb":1,"a":[["ComplexPortal%3ACPX-13290","-"],["ComplexPortal%3ACPX-13949","-"],["ComplexPortal%3ACPX-14233","-"],["ComplexPortal%3ACPX-14264","-"],["ComplexPortal%3ACPX-19464","-"],["ComplexPortal%3ACPX-26179","-"]],"b":[["unclassified/6ar-11as-11br-10-acetyl-11-hydroxy-7-7-dimethyl-2-6-6a-7-11a-11b-hexahydro-9h-py.yaml","(6aR,11aS,11bR)-10-acetyl-11-hydroxy-7,7-dimethyl-2,6,6a,7,11a,11b-hexahydro-9H-pyrrolo[1',2':2,3]isoindolo[4,5,6-cd]indol-9-one"]]},{"id":"UniProt:P22748","l":"","na":15,"nb":1,"a":[["ComplexPortal%3ACPX-17339","-"],["ComplexPortal%3ACPX-17919","-"],["ComplexPortal%3ACPX-18486","-"],["ComplexPortal%3ACPX-19014","-"],["ComplexPortal%3ACPX-23066","-"],["ComplexPortal%3ACPX-23243","-"]],"b":[["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"UniProt:Q02779","l":"","na":15,"nb":1,"a":[["ComplexPortal%3ACPX-10957","-"],["ComplexPortal%3ACPX-11452","-"],["ComplexPortal%3ACPX-11502","-"],["ComplexPortal%3ACPX-11859","-"],["ComplexPortal%3ACPX-13254","-"],["ComplexPortal%3ACPX-13493","-"]],"b":[["alkaloids/k-252a-2.yaml","K-252a"]]},{"id":"NCBITaxon:1061","l":"Rhodobacter 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1"],["PROSITE%3APS01093","Adenylate cyclase class-I signature 2"]],"b":[["amino_acids_and_peptides/amonabactin-p-750.yaml","amonabactin P 750"]]},{"id":"UniProt:O00754","l":"","na":13,"nb":1,"a":[["ComplexPortal%3ACPX-15965","-"],["ComplexPortal%3ACPX-19551","-"],["ComplexPortal%3ACPX-20291","-"],["ComplexPortal%3ACPX-26077","-"],["ComplexPortal%3ACPX-26144","-"],["CDD%3Acd10810","GH38N_AMII_LAM_like"]],"b":[["alkaloids/swainsonine.yaml","swainsonine"]]},{"id":"UniProt:O15530","l":"","na":13,"nb":1,"a":[["ComplexPortal%3ACPX-13979","-"],["ComplexPortal%3ACPX-20891","-"],["ComplexPortal%3ACPX-24544","-"],["GO%3A0004676","3-phosphoinositide-dependent protein kinase activity"],["GO%3A0141124","intracellular signaling cassette"],["GO%3A0043304","regulation of mast cell degranulation"]],"b":[["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"UniProt:Q14749","l":"","na":13,"nb":1,"a":[["EC%3A2.1.1.20","glycine N-methyltransferase"],["RHEA%3A19937","glycine + S-adenosyl-L-methionine 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DUF7067"],["Pfam%3APF02446","4-alpha-glucanotransferase"],["Pfam%3APF22973","Alpha-glucan water dikinase, phosphohistidine-like domain"],["Pfam%3APF23166","Alpha-glucan water dikinase 1 Ig-like N-terminal domain"]],"b":[["fatty_acids/itaconic-acid.yaml","itaconic acid"]]},{"id":"UniProt:O60503","l":"","na":11,"nb":1,"a":[["ComplexPortal%3ACPX-10819","-"],["ComplexPortal%3ACPX-10882","-"],["ComplexPortal%3ACPX-14634","-"],["ComplexPortal%3ACPX-14903","-"],["ComplexPortal%3ACPX-17315","-"],["ComplexPortal%3ACPX-18747","-"]],"b":[["polyketides/chlortetracycline.yaml","chlortetracycline"]]},{"id":"UniProt:P00915","l":"","na":11,"nb":1,"a":[["ComplexPortal%3ACPX-11364","-"],["ComplexPortal%3ACPX-12060","-"],["ComplexPortal%3ACPX-14728","-"],["ComplexPortal%3ACPX-15000","-"],["ComplexPortal%3ACPX-25381","-"],["GO%3A0018820","cyanamide hydratase activity"]],"b":[["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"UniProt:Q9BX63","l":"","na":11,"nb":1,"a":[["ComplexPortal%3ACPX-4426","BRCA1-B complex"],["ComplexPortal%3ACPX-17429","-"],["ComplexPortal%3ACPX-26140","-"],["CDD%3Acd18788","SF2_C_XPD"],["CDD%3Acd17970","DEAHc_FancJ"],["InterPro%3AIPR006554","Helicase-like, DEXD box c2 type"]],"b":[["unclassified/telomestatin.yaml","telomestatin"]]},{"id":"DOI:10.1002/cbic.201000628","l":"","na":1,"nb":10,"a":[["NCBIfam%3ANF039627","DUF6023 family 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pre-guanitoxin N-hydroxylase GntA"],["NCBIfam%3ANF041365","guanitoxin biosynthesis L-arginine gamma (S) hydroxylase"],["NCBIfam%3ANF041363","guanitoxin biosynthesis L-enduracididine beta-hydroxylase GntD"],["NCBIfam%3ANF041358","guanitoxin biosynthesis MATE family efflux transporter GntT"],["NCBIfam%3ANF041257","guanitoxin biosynthesis MBL fold metallo-hydrolase GntH"]],"b":[["alkaloids/guanitoxin.yaml","guanitoxin"]]},{"id":"NCBITaxon:116188","l":"Streptomyces coeruleorubidus","na":1,"nb":10,"a":[["Pfam%3APF13732","ATP-binding protein DrrA1-3-like, C-terminal domain"]],"b":[["amino_acids_and_peptides/pacidamycin-1.yaml","pacidamycin 1"],["amino_acids_and_peptides/pacidamycin-2.yaml","pacidamycin 2"],["amino_acids_and_peptides/pacidamycin-3.yaml","pacidamycin 3"],["amino_acids_and_peptides/pacidamycin-4.yaml","pacidamycin 4"],["amino_acids_and_peptides/pacidamycin-5.yaml","pacidamycin 5"],["amino_acids_and_peptides/pacidamycin-6.yaml","pacidamycin 6"]]},{"id":"NCBITaxon:257313","l":"Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)","na":10,"nb":1,"a":[["Pfam%3APF03440","Aerolysin/Pertussis toxin (APT) domain"],["Pfam%3APF07411","Domain of unknown function (DUF1508)"],["Pfam%3APF25988","CyaD, alpha-helical hairpin domain"],["Pfam%3APF03497","Anthrax toxin LF subunit"],["Pfam%3APF02537","CrcB-like protein, Camphor Resistance (CrcB)"],["Pfam%3APF16970","Type-1 fimbrial protein, A"]],"b":[["amino_acids_and_peptides/alcaligin.yaml","alcaligin"]]},{"id":"NCBITaxon:316","l":"Stutzerimonas stutzeri","na":10,"nb":1,"a":[["Pfam%3APF12679","ABC-2 family transporter protein"],["Pfam%3APF09081","Glucan 1,4-alpha-maltotetraohydrolase, domain C"],["Pfam%3APF09459","Ethylbenzene dehydrogenase"],["Pfam%3APF08406","CbbQ/NirQ/NorQ C-terminal"],["Pfam%3APF11953","Domain of unknown function (DUF3470)"],["Pfam%3APF18793","Nitrous oxide reductase propeller repeat 2"]],"b":[["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"]]},{"id":"UniProt:P0A749","l":"","na":10,"nb":1,"a":[["GO%3A0008760","UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity"],["GO%3A0019277","UDP-N-acetylgalactosamine biosynthetic process"],["NCBIfam%3ANF006873","UDP-N-acetylglucosamine 1-carboxyvinyltransferase"],["NCBIfam%3ATIGR01072","UDP-N-acetylglucosamine 1-carboxyvinyltransferase"],["CDD%3Acd01555","UdpNAET"],["InterPro%3AIPR001986","Enolpyruvate transferase domain"]],"b":[["amino_acids_and_peptides/feglymycin.yaml","feglymycin"]]},{"id":"UniProt:P14679","l":"","na":10,"nb":1,"a":[["GO%3A0004503","tyrosinase activity"],["GO%3A0006726","eye pigment biosynthetic process"],["GO%3A0006583","melanin biosynthetic process from tyrosine"],["GO%3A0042438","melanin biosynthetic process"],["InterPro%3AIPR002227","Tyrosinase copper-binding domain"],["Pfam%3APF00264","Common central domain of tyrosinase"]],"b":[["polyketides/kojic-acid.yaml","kojic acid"]]},{"id":"UniProt:P15884","l":"","na":10,"nb":1,"a":[["ComplexPortal%3ACPX-11961","-"],["ComplexPortal%3ACPX-14266","-"],["ComplexPortal%3ACPX-14268","-"],["ComplexPortal%3ACPX-14282","-"],["ComplexPortal%3ACPX-21052","-"],["ComplexPortal%3ACPX-26210","-"]],"b":[["alkaloids/toxoflavin.yaml","toxoflavin"]]},{"id":"UniProt:P41240","l":"","na":10,"nb":1,"a":[["EC%3A2.7.10.4","[Src-family] C-terminal protein kinase"],["ComplexPortal%3ACPX-11775","-"],["ComplexPortal%3ACPX-18631","-"],["ComplexPortal%3ACPX-19439","-"],["GO%3A0042997","negative regulation of Golgi to plasma membrane protein transport"],["GO%3A0060368","regulation of Fc receptor mediated stimulatory signaling pathway"]],"b":[["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"NCBITaxon:266","l":"Paracoccus denitrificans","na":9,"nb":1,"a":[["Pfam%3APF07835","Bacterial aa3 type cytochrome c oxidase subunit IV"],["Pfam%3APF04828","Glutathione-dependent formaldehyde-activating enzyme"],["Pfam%3APF16448","LapD/MoxY periplasmic domain"],["Pfam%3APF17267","Family of unknown function (DUF5333)"],["Pfam%3APF17272","Family of unknown function (DUF5337)"],["PROSITE%3APS00364","Bacterial quinoprotein dehydrogenases signature 2"]],"b":[["alkaloids/parabactin.yaml","parabactin"]]},{"id":"UniProt:P00811","l":"","na":9,"nb":1,"a":[["EC%3A3.5.2.6","beta-lactamase"],["RHEA%3A20401","a beta-lactam + H2O = a substituted beta-amino acid"],["GO%3A0017001","antibiotic catabolic process"],["NCBIfam%3ANF000185","BlaEC family class C beta-lactamase"],["NCBIfam%3ANF033085","class C beta-lactamase"],["NCBIfam%3ANF012173","CMY2/MIR/ACT/EC family class C beta-lactamase"]],"b":[["amino_acids_and_peptides/clavulanic-acid-2.yaml","clavulanic acid"]]},{"id":"UniProt:P23280","l":"","na":9,"nb":1,"a":[["ComplexPortal%3ACPX-11709","-"],["ComplexPortal%3ACPX-12376","-"],["ComplexPortal%3ACPX-12422","-"],["ComplexPortal%3ACPX-12445","-"],["ComplexPortal%3ACPX-13747","-"],["ComplexPortal%3ACPX-17694","-"]],"b":[["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"UniProt:P24666","l":"","na":9,"nb":1,"a":[["ComplexPortal%3ACPX-17111","-"],["ComplexPortal%3ACPX-18047","-"],["ComplexPortal%3ACPX-19744","-"],["ComplexPortal%3ACPX-26078","-"],["CDD%3Acd16343","LMWPTP"],["InterPro%3AIPR023485","Phosphotyrosine protein phosphatase I"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"UniProt:P43250","l":"","na":9,"nb":1,"a":[["ComplexPortal%3ACPX-15339","-"],["ComplexPortal%3ACPX-18479","-"],["ComplexPortal%3ACPX-21827","-"],["ComplexPortal%3ACPX-23485","-"],["ComplexPortal%3ACPX-26222","-"],["GO%3A0047696","beta-adrenergic receptor kinase activity"]],"b":[["carbohydrates/sangivamycin.yaml","sangivamycin"]]},{"id":"UniProt:Q14353","l":"","na":9,"nb":1,"a":[["ComplexPortal%3ACPX-17611","-"],["ComplexPortal%3ACPX-22207","-"],["ComplexPortal%3ACPX-25132","-"],["GO%3A0030731","guanidinoacetate N-methyltransferase activity"],["GO%3A0006601","creatine biosynthetic process"],["GO%3A0006600","creatine metabolic process"]],"b":[["unclassified/6ar-11as-11br-10-acetyl-11-hydroxy-7-7-dimethyl-2-6-6a-7-11a-11b-hexahydro-9h-py.yaml","(6aR,11aS,11bR)-10-acetyl-11-hydroxy-7,7-dimethyl-2,6,6a,7,11a,11b-hexahydro-9H-pyrrolo[1',2':2,3]isoindolo[4,5,6-cd]indol-9-one"]]},{"id":"UniProt:Q8JUX6","l":"","na":1,"nb":9,"a":[["proteintraitsmech%3ABIOLIP_LFO","LFO-binding site"]],"b":[["alkaloids/ergotamine.yaml","ergotamine"],["amino_acids_and_peptides/leupeptin-a.yaml","leupeptin A"],["amino_acids_and_peptides/linaclotide.yaml","linaclotide"],["fatty_acids/all-cis-5-8-11-14-17-icosapentaenoic-acid.yaml","all-cis-5,8,11,14,17-icosapentaenoic acid"],["polyketides/kojic-acid.yaml","kojic acid"],["polyketides/monactin.yaml","monactin"]]},{"id":"CHEBI:58515","l":"","na":8,"nb":1,"a":[["EC%3A1.14.11.55","ectoine hydroxylase"],["EC%3A3.5.4.44","ectoine hydrolase"],["EC%3A4.2.1.108","ectoine synthase"],["RHEA%3A17281","(2S)-4-acetamido-2-aminobutanoate = L-ectoine + H2O"],["RHEA%3A45740","L-ectoine + 2-oxoglutarate + O2 = 5-hydroxyectoine + succinate + CO2"],["RHEA%3A52304","L-ectoine + H2O = (2S)-2-acetamido-4-aminobutanoate"]],"b":[["amino_acids_and_peptides/ectoine.yaml","ectoine"]]},{"id":"DOI:10.1002/anie.202015105","l":"","na":1,"nb":8,"a":[["NCBIfam%3ANF055241","Acyl halogenase CylC-like"]],"b":[["unclassified/hapalosin-c.yaml","hapalosin C"],["unclassified/hapalosin-d.yaml","hapalosin D"],["unclassified/hapalosin-e.yaml","hapalosin E"],["unclassified/hapalosin-f.yaml","hapalosin F"],["unclassified/hapalosin-g.yaml","hapalosin G"],["unclassified/nocuolactylate-a.yaml","Nocuolactylate A"]]},{"id":"DOI:10.1111/1751-7915.12110","l":"","na":8,"nb":1,"a":[["NCBIfam%3ANF053550","BtrH-related acyltransferase DarH"],["NCBIfam%3ANF053536","DarG family dialkylresorcinol biosynthesis protein"],["NCBIfam%3ANF053539","dialkylresorcinol biosynthesis protein DarB"],["NCBIfam%3ANF053545","flexirubin biosynthesis protein DarG"],["NCBIfam%3ANF053551","flexirubin biosynthesis putative acyl-CoA ligase FlxY"],["NCBIfam%3ANF053542","flexirubin biosynthesis SDR family reductase FlxB"]],"b":[["polyketides/flexirubin.yaml","flexirubin"]]},{"id":"DOI:10.1128/AAC.01226-09","l":"","na":8,"nb":1,"a":[["RHEA%3A36263","hydroxyurea + O-acetyl-L-serine = O-ureido-L-serine + acetate + H(+)"],["RHEA%3A36791","N(omega)-hydroxy-L-arginine + H2O = hydroxyurea + L-ornithine"],["RHEA%3A36711","O-ureido-D-serine + ATP + H2O + H(+) = D-cycloserine + NH4(+) + ADP + CO2 + phosphate"],["RHEA%3A36707","O-ureido-L-serine = O-ureido-D-serine"],["NCBIfam%3ANF058666","D-cycloserine synthetase"],["NCBIfam%3ANF039383","DUF6225 family protein"]],"b":[["amino_acids_and_peptides/cycloserine.yaml","cycloserine"]]},{"id":"NCBITaxon:1352","l":"Enterococcus faecium","na":8,"nb":1,"a":[["Pfam%3APF01721","Class II bacteriocin"],["Pfam%3APF13700","Domain of unknown function (DUF4158)"],["Pfam%3APF07478","D-ala D-ala ligase C-terminus"],["Pfam%3APF01820","D-ala D-ala ligase N-terminus"],["PROSITE%3APS60030","Bacteriocin class IIa family signature"],["PROSITE%3APS00843","D-alanine--D-alanine ligase signature 1"]],"b":[["amino_acids_and_peptides/enterocin-a.yaml","enterocin A"]]},{"id":"NCBITaxon:1703937","l":"Streptomyces sp. CB03234","na":1,"nb":8,"a":[["TED%3AAF-A0A1Q5LKM4-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A1Q5LKM4-F1-model_v4_TED02"]],"b":[["terpenoids/tiancilactone-a.yaml","tiancilactone A"],["terpenoids/tiancilactone-b.yaml","tiancilactone B"],["terpenoids/tiancilactone-c.yaml","tiancilactone C"],["terpenoids/tiancilactone-d.yaml","tiancilactone D"],["terpenoids/tiancilactone-e.yaml","tiancilactone E"],["terpenoids/tiancilactone-f.yaml","tiancilactone F"]]},{"id":"NCBITaxon:1908","l":"Streptomyces globisporus","na":1,"nb":8,"a":[["PROSITE%3APS00953","Glycosyl hydrolases family 25 active site signature"]],"b":[["polyketides/c-1027-chromophore.yaml","C-1027 chromophore"],["polyketides/c-1027.yaml","C-1027"],["polyketides/landomycin-a.yaml","landomycin A"],["polyketides/nonactin.yaml","nonactin"],["polyketides/prejadomycin.yaml","prejadomycin"],["polyketides/tetranactin.yaml","tetranactin"]]},{"id":"NCBITaxon:345341","l":"Kutzneria sp. 744","na":1,"nb":8,"a":[["TED%3AAF-W7SU68-F1-model_v4_TED01","TED novel fold AF-W7SU68-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/kutzneride-6.yaml","Kutzneride 6"],["unclassified/kutzneride-1.yaml","Kutzneride 1"],["unclassified/kutzneride-2.yaml","Kutzneride 2"],["unclassified/kutzneride-3.yaml","Kutzneride 3"],["unclassified/kutzneride-4.yaml","Kutzneride 4"],["unclassified/kutzneride-5.yaml","Kutzneride 5"]]},{"id":"NCBITaxon:380703","l":"Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)","na":8,"nb":1,"a":[["Pfam%3APF26341","tRNA 2-selenouridine synthase AAA domain"],["Pfam%3APF11890","Domain of unknown function (DUF3410)"],["Pfam%3APF11944","Protein of unknown function (DUF3461)"],["Pfam%3APF04356","Protein of unknown function (DUF489)"],["Pfam%3APF12563","Hemolytic toxin N terminal"],["Pfam%3APF04362","Bacterial Fe(2+) trafficking"]],"b":[["amino_acids_and_peptides/amonabactin-p-750.yaml","amonabactin P 750"]]},{"id":"NCBITaxon:40318","l":"Streptomyces nodosus","na":1,"nb":8,"a":[["TED%3AAF-A0A0B5DA96-F1-model_v4_TED01","TED novel fold AF-A0A0B5DA96-F1-model_v4_TED01"]],"b":[["alkaloids/melanin.yaml","melanin"],["amino_acids_and_peptides/aerobactin.yaml","aerobactin"],["amino_acids_and_peptides/coelichelin.yaml","coelichelin"],["amino_acids_and_peptides/ectoine.yaml","ectoine"],["amino_acids_and_peptides/siamycin-i.yaml","siamycin I"],["fatty_acids/butyrolactone.yaml","γ-butyrolactone"]]},{"id":"NCBITaxon:420953","l":"Paraburkholderia megapolitana","na":1,"nb":8,"a":[["proteintraitsmech%3AELIFE109154_GrbD","GrbD-type graminine biosynthesis protein family"]],"b":[["amino_acids_and_peptides/megapolibactin-a.yaml","megapolibactin A"],["amino_acids_and_peptides/megapolibactin-acyc.yaml","megapolibactin Acyc"],["amino_acids_and_peptides/megapolibactin-b.yaml","megapolibactin B"],["amino_acids_and_peptides/megapolibactin-c.yaml","megapolibactin C"],["amino_acids_and_peptides/megapolibactin-d.yaml","megapolibactin D"],["amino_acids_and_peptides/megapolibactin-e.yaml","megapolibactin E"]]},{"id":"NCBITaxon:492670","l":"Bacillus velezensis","na":1,"nb":8,"a":[["TED%3AAF-A0A7S9EWF1-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A7S9EWF1-F1-model_v4_TED02"]],"b":[["amino_acids_and_peptides/bacillomycin-d.yaml","bacillomycin D"],["amino_acids_and_peptides/bacilysin.yaml","bacilysin"],["polyketides/bacillaene.yaml","bacillaene"],["polyketides/difficidin.yaml","difficidin"],["polyketides/macrolactin-h.yaml","macrolactin H"],["unclassified/corynebactin.yaml","corynebactin"]]},{"id":"NCBITaxon:5062","l":"Aspergillus oryzae","na":1,"nb":8,"a":[["Pfam%3APF07335","Fungal chitosanase of glycosyl hydrolase group 75"]],"b":[["amino_acids_and_peptides/ferrichrome-2.yaml","ferrichrome"],["polyketides/2-acetyl-1-3-6-8-tetrahydroxynaphthalene.yaml","2-acetyl-1,3,6,8-tetrahydroxynaphthalene"],["polyketides/kojic-acid.yaml","kojic acid"],["terpenoids/aphidicolin.yaml","aphidicolin"],["unclassified/2-oxocyclopiazonic-acid.yaml","2-oxocyclopiazonic acid"],["unclassified/6ar-11as-11br-10-acetyl-11-hydroxy-7-7-dimethyl-2-6-6a-7-11a-11b-hexahydro-9h-py.yaml","(6aR,11aS,11bR)-10-acetyl-11-hydroxy-7,7-dimethyl-2,6,6a,7,11a,11b-hexahydro-9H-pyrrolo[1',2':2,3]isoindolo[4,5,6-cd]indol-9-one"]]},{"id":"UniProt:O96017","l":"","na":8,"nb":1,"a":[["ComplexPortal%3ACPX-16839","-"],["ComplexPortal%3ACPX-21166","-"],["GO%3A0044773","mitotic DNA damage checkpoint signaling"],["CDD%3Acd14084","STKc_Chk2"],["CDD%3Acd22666","FHA_CHK2"],["ELM%3AELME000425","DOC_PP2A_B56_1"]],"b":[["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"UniProt:Q8TD30","l":"","na":8,"nb":1,"a":[["ComplexPortal%3ACPX-11669","-"],["ComplexPortal%3ACPX-11684","-"],["ComplexPortal%3ACPX-18140","-"],["ComplexPortal%3ACPX-18547","-"],["ComplexPortal%3ACPX-25098","-"],["ComplexPortal%3ACPX-26258","-"]],"b":[["polyketides/monactin.yaml","monactin"]]},{"id":"CHEBI:16089","l":"","na":7,"nb":1,"a":[["EC%3A1.14.15.35","6-deoxyerythronolide B hydroxylase"],["EC%3A2.3.1.94","6-deoxyerythronolide-B synthase"],["RHEA%3A40299","6-deoxyerythronolide B + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = erythronolide B + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O"],["RHEA%3A23068","6 (S)-methylmalonyl-CoA + propanoyl-CoA + 6 NADPH + 12 H(+) = 6-deoxyerythronolide B + 6 CO2 + 6 NADP(+) + 7 CoA + H2O"],["MCSA%3A694","6-deoxyerythronolide B hydroxylase"],["MCSA%3A602","6-deoxyerythronolide-B synthase"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"DOI:10.1016/j.chembiol.2013.09.021","l":"","na":7,"nb":1,"a":[["RHEA%3A50408","1-(2-aminophenyl)decane-1,3-dione = 2-heptyl-4(1H)-quinolone + H2O"],["RHEA%3A50396","(2-aminobenzoyl)acetate + octanoyl-CoA + H(+) = 2-heptyl-4(1H)-quinolone + CO2 + CoA + H2O"],["RHEA%3A50472","anthraniloyl-CoA + malonyl-CoA + H(+) = (2-aminobenzoyl)acetyl-CoA + CO2 + CoA"],["RHEA%3A50400","L-cysteinyl-[PqsC protein] + octanoyl-CoA = S-octanoyl-L-cysteinyl-[PqsC protein] + CoA"],["RHEA%3A50476","L-cysteinyl-[PqsD protein] + anthraniloyl-CoA = S-anthraniloyl-L-cysteinyl-[PqsD protein] + CoA"],["RHEA%3A38543","S-anthraniloyl-L-cysteinyl-[PqsD protein] + malonyl-CoA + H(+) = L-cysteinyl-[PqsD protein] + (2-aminobenzoyl)acetyl-CoA + CO2"]],"b":[["alkaloids/2-heptylquinolin-4-1h-one.yaml","2-heptylquinolin-4(1H)-one"]]},{"id":"NCBITaxon:1314807","l":"Dendrothele bispora (strain CBS 962.96)","na":7,"nb":1,"a":[["TED%3AAF-A0A4S8L719-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4S8L719-F1-model_v4_TED01"],["TED%3AAF-A0A4S8LBA1-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A4S8LBA1-F1-model_v4_TED02"],["TED%3AAF-A0A4S8KM73-F1-model_v4_TED02","TED novel fold AF-A0A4S8KM73-F1-model_v4_TED02"],["TED%3AAF-A0A4S8KTD4-F1-model_v4_TED01","TED novel fold AF-A0A4S8KTD4-F1-model_v4_TED01"],["TED%3AAF-A0A4S8LE48-F1-model_v4_TED01","TED novel fold AF-A0A4S8LE48-F1-model_v4_TED01"],["TED%3AAF-A0A4S8MMV1-F1-model_v4_TED02","TED novel fold AF-A0A4S8MMV1-F1-model_v4_TED02"]],"b":[["amino_acids_and_peptides/dendrothelin-a.yaml","dendrothelin A"]]},{"id":"NCBITaxon:391037","l":"Salinispora arenicola CNS-205","na":1,"nb":7,"a":[["Pfam%3APF12072","RNase Y N-terminal region"]],"b":[["alkaloids/lymphostin.yaml","lymphostin"],["alkaloids/lymphostinol.yaml","lymphostinol"],["alkaloids/neolymphostin-b.yaml","neolymphostin b"],["alkaloids/neolymphostinol-b.yaml","neolymphostinol B"],["alkaloids/staurosporine.yaml","staurosporine"],["amino_acids_and_peptides/cyclomarin-d.yaml","cyclomarin D"]]},{"id":"NCBITaxon:405948","l":"","na":1,"nb":7,"a":[["Pfam%3APF21036","Erythromycin biosynthesis protein CIII-like, N-terminal domain"]],"b":[["amino_acids_and_peptides/erythrochelin.yaml","erythrochelin"],["polyketides/erythromycin-a.yaml","erythromycin A"],["polyketides/erythromycin-b.yaml","erythromycin B"],["polyketides/erythromycin-c.yaml","erythromycin C"],["polyketides/erythromycin-d.yaml","erythromycin D"],["polyketides/flaviolin.yaml","flaviolin"]]},{"id":"NCBITaxon:5077","l":"Penicillium citrinum","na":1,"nb":7,"a":[["PROSITE%3APS00876","Indoleamine 2,3-dioxygenase signature 1"]],"b":[["alkaloids/4-hydroxy-2-quinolone.yaml","4-hydroxy-2-quinolone"],["polyketides/citrinin.yaml","(+)-citrinin"],["polyketides/mevinic-acid.yaml","mevinic acid"],["unclassified/orcinol.yaml","orcinol"],["unclassified/penigainamide-a.yaml","penigainamide A"],["unclassified/penigainamide-b.yaml","penigainamide B"]]},{"id":"NCBITaxon:5476","l":"Candida albicans","na":7,"nb":1,"a":[["Pfam%3APF11766","Agglutinin-like protein, N-terminal domain"],["Pfam%3APF16856","Cell division control protein 4 dimerisation domain"],["Pfam%3APF18325","Fatty acid synthase subunit alpha Acyl carrier domain"],["Pfam%3APF18314","Fatty acid synthase type I helical domain"],["Pfam%3APF17828","N-terminal domain in fatty acid synthase subunit beta"],["Pfam%3APF05388","Carboxypeptidase Y pro-peptide"]],"b":[["unclassified/antimycin-a1b.yaml","antimycin A1B"]]},{"id":"NCBITaxon:5580","l":"Aureobasidium pullulans","na":7,"nb":1,"a":[["TED%3AAF-A0A4S8XR15-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4S8XR15-F1-model_v4_TED01"],["TED%3AAF-A0A4S8YVB9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4S8YVB9-F1-model_v4_TED01"],["TED%3AAF-A0A4S9KUA9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4S9KUA9-F1-model_v4_TED01"],["TED%3AAF-A0A4T0BHY6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4T0BHY6-F1-model_v4_TED01"],["TED%3AAF-A0A4S9MB45-F1-model_v4_TED01","TED novel fold AF-A0A4S9MB45-F1-model_v4_TED01"],["TED%3AAF-A0A4S9RE93-F1-model_v4_TED01","TED novel fold AF-A0A4S9RE93-F1-model_v4_TED01"]],"b":[["unclassified/abt1.yaml","AbT1"]]},{"id":"NCBITaxon:5599","l":"Alternaria alternata","na":1,"nb":7,"a":[["Pfam%3APF16541","Alternaria alternata allergen 1"]],"b":[["alkaloids/ak-toxin-i.yaml","AK-toxin I"],["alkaloids/dimethylcoprogen.yaml","dimethylcoprogen"],["amino_acids_and_peptides/am-toxin.yaml","AM-toxin"],["polyketides/act-toxin-ii.yaml","ACT-Toxin II"],["polyketides/unii-yc2q1o94pt.yaml","UNII-YC2Q1O94PT"],["unclassified/af-toxin.yaml","AF-toxin"]]},{"id":"NCBITaxon:672","l":"Vibrio vulnificus","na":7,"nb":1,"a":[["Pfam%3APF03174","Chitobiase/beta-hexosaminidase C-terminal domain"],["Pfam%3APF08021","Siderophore-interacting FAD-binding domain"],["Pfam%3APF11575","FhuF 2Fe-2S C-terminal domain"],["Pfam%3APF27349","IcsB middle domain"],["Pfam%3APF21735","C-terminal repeat from RTX toxins"],["Pfam%3APF07634","RtxA repeat"]],"b":[["alkaloids/vulnibactin.yaml","vulnibactin"]]},{"id":"NCBITaxon:67339","l":"Streptomyces orinoci","na":1,"nb":7,"a":[["Pfam%3APF09277","Erythronolide synthase, docking"]],"b":[["polyketides/aureothin.yaml","aureothin"],["polyketides/orinocin.yaml","orinocin"],["polyketides/spectinabilin.yaml","spectinabilin"],["terpenoids/snf4435c.yaml","SNF4435C"],["terpenoids/snf4435d.yaml","SNF4435D"],["unclassified/neoantimycin-2.yaml","neoantimycin"]]},{"id":"NCBITaxon:68280","l":"Streptomyces violaceusniger","na":1,"nb":7,"a":[["TED%3AAF-A0A0X3VKA0-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A0X3VKA0-F1-model_v4_TED01"]],"b":[["fatty_acids/desulfoclethramycin.yaml","desulfoclethramycin"],["polyketides/be-24566b.yaml","BE-24566B"],["polyketides/elaiophylin.yaml","elaiophylin"],["polyketides/meridamycin-2.yaml","meridamycin"],["polyketides/nigericin.yaml","nigericin"],["terpenoids/2-methylisoborneol.yaml","2-methylisoborneol"]]},{"id":"UniProt:P27296","l":"","na":7,"nb":1,"a":[["GO%3A0033677","DNA/RNA helicase activity"],["NCBIfam%3ANF008729","ATP-dependent DNA helicase DinG"],["InterPro%3AIPR006555","ATP-dependent helicase, C-terminal"],["InterPro%3AIPR006554","Helicase-like, DEXD box c2 type"],["InterPro%3AIPR014013","Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type"],["InterPro%3AIPR010614","RAD3-like helicase, DEAD"]],"b":[["unclassified/telomestatin.yaml","telomestatin"]]},{"id":"UniProt:P50135","l":"","na":7,"nb":1,"a":[["GO%3A0046539","histamine N-methyltransferase activity"],["GO%3A0001695","histamine catabolic process"],["GO%3A0001692","histamine metabolic process"],["GO%3A0006548","L-histidine catabolic process"],["Pfam%3APF13489","Methyltransferase domain"],["PROSITE%3APS51597","Histamine N-methyltransferase (EC 2.1.1.8) family profile"]],"b":[["unclassified/6ar-11as-11br-10-acetyl-11-hydroxy-7-7-dimethyl-2-6-6a-7-11a-11b-hexahydro-9h-py.yaml","(6aR,11aS,11bR)-10-acetyl-11-hydroxy-7,7-dimethyl-2,6,6a,7,11a,11b-hexahydro-9H-pyrrolo[1',2':2,3]isoindolo[4,5,6-cd]indol-9-one"]]},{"id":"UniProt:Q8IZQ5","l":"","na":7,"nb":1,"a":[["ComplexPortal%3ACPX-14418","-"],["ComplexPortal%3ACPX-17411","-"],["ComplexPortal%3ACPX-17423","-"],["ComplexPortal%3ACPX-17969","-"],["ComplexPortal%3ACPX-19650","-"],["ComplexPortal%3ACPX-22629","-"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"UniProt:Q92731","l":"","na":7,"nb":1,"a":[["GO%3A0030284","nuclear estrogen receptor activity"],["CDD%3Acd07171","NR_DBD_ER"],["CDD%3Acd06949","NR_LBD_ER"],["InterPro%3AIPR021064","Estrogen receptor beta-like, N-terminal"],["Pfam%3APF12497","Estrogen receptor beta"],["ELM%3AELME000053","MOD_GSK3_1"]],"b":[["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"UniProt:Q96LB1","l":"","na":7,"nb":1,"a":[["GO%3A0004985","G protein-coupled opioid receptor activity"],["GO%3A1990595","mast cell secretagogue receptor activity"],["GO%3A0045576","mast cell activation"],["CDD%3Acd15106","7tmA_MrgprX-like"],["InterPro%3AIPR017452","GPCR, rhodopsin-like, 7TM"],["PROSITE%3APS50262","G-protein coupled receptors family 1 profile"]],"b":[["alkaloids/thebaine.yaml","thebaine"]]},{"id":"UniProt:Q9FUZ2","l":"","na":7,"nb":1,"a":[["GO%3A0042586","peptide deformylase activity"],["NCBIfam%3ANF001159","peptide deformylase"],["NCBIfam%3ATIGR00079","peptide deformylase"],["CDD%3Acd00487","Pep_deformylase"],["Pfam%3APF01327","Polypeptide deformylase"],["InterPro%3AIPR036821","Peptide deformylase superfamily"]],"b":[["amino_acids_and_peptides/actinonin.yaml","actinonin"]]},{"id":"CHEBI:16536","l":"orcinol","na":6,"nb":1,"a":[["EC%3A1.14.13.6","orcinol 2-monooxygenase"],["EC%3A4.1.1.58","orsellinate decarboxylase"],["RHEA%3A63072","3 malonyl-CoA + acetyl-CoA + 3 H(+) = orcinol + 4 CO2 + 4 CoA"],["RHEA%3A19601","orcinol + NADH + O2 + H(+) = 2,3,5-trihydroxytoluene + NAD(+) + H2O"],["RHEA%3A80563","orcinol + S-adenosyl-L-methionine = 3-methoxy-5-methylphenol + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A16733","orsellinate + H(+) = orcinol + CO2"]],"b":[["unclassified/orcinol.yaml","orcinol"]]},{"id":"CHEBI:18365","l":"naphthalene-1,3,6,8-tetrol","na":6,"nb":1,"a":[["EC%3A1.1.1.252","tetrahydroxynaphthalene reductase"],["EC%3A2.3.1.233","1,3,6,8-tetrahydroxynaphthalene synthase"],["RHEA%3A41524","5 malonyl-CoA + 5 H(+) = naphthalene-1,3,6,8-tetrol + 5 CO2 + 5 CoA + H2O"],["RHEA%3A62700","naphtopyrone YWA1 + H2O = naphthalene-1,3,6,8-tetrol + acetoacetate + H(+)"],["RHEA%3A21908","scytalone + NADP(+) = naphthalene-1,3,6,8-tetrol + NADPH + H(+)"],["MCSA%3A891","Tetrahydroxynaphthalene reductase"]],"b":[["polyketides/naphthalene-1-3-6-8-tetrol.yaml","naphthalene-1,3,6,8-tetrol"]]},{"id":"CHEBI:63677","l":"","na":6,"nb":1,"a":[["EC%3A1.14.13.154","erythromycin 12 hydroxylase"],["EC%3A2.1.1.254","erythromycin 3'-O-methyltransferase"],["EC%3A2.4.1.278","3-alpha-mycarosylerythronolide B desosaminyl transferase"],["RHEA%3A32091","3-O-alpha-L-mycarosylerythronolide B + dTDP-alpha-D-desosamine = erythromycin D + dTDP + H(+)"],["RHEA%3A32631","erythromycin D + NADPH + O2 + H(+) = erythromycin C + NADP(+) + H2O"],["RHEA%3A32651","erythromycin D + S-adenosyl-L-methionine = erythromycin B + S-adenosyl-L-homocysteine + H(+)"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"DOI:10.1016/j.cell.2016.12.021","l":"","na":1,"nb":6,"a":[["NCBIfam%3ANF039691","DUF6219 family protein"]],"b":[["alkaloids/pzn10.yaml","PZN10"],["alkaloids/pzn11.yaml","PZN11"],["alkaloids/pzn5.yaml","PZN5"],["alkaloids/pzn6.yaml","PZN6"],["alkaloids/pzn7.yaml","PZN7"],["alkaloids/pzn9.yaml","PZN9"]]},{"id":"DOI:10.1073/pnas.0501424102","l":"","na":6,"nb":1,"a":[["RHEA%3A63356","(1S,4R)-2-(C-substituted-aminomethyl)-4-acyl-2-thiazoline-[protein] + O2 = (S)-2-(C-substituted-aminomethyl)-4-acyl-1,3-thiazole-[protein] + H2O2"],["RHEA%3A63360","(S,S)-2-(C-substituted-aminomethyl)-4-acyl-2-oxazoline-[protein] + O2 = (S)-2-(C-substituted-aminomethyl)-4-acyl-1,3-oxazole-[protein] + H2O2"],["RHEA%3A63364","(S,S)-2-(C-substituted-aminomethyl)-4-acyl-5-methyl-2-oxazoline-[protein] + O2 = (S)-2-(C-substituted-aminomethyl)-4-acyl-5-methyl-1,3-oxazole-[protein] + H2O2"],["InterPro%3AIPR031035","Cyanobactin cluster PatC/TenC/TruC protein"],["NCBIfam%3ATIGR04447","cyanobactin biosynthesis PatC/TenC/TruC family protein"],["NCBIfam%3ATIGR03895","PatA/PatG family cyanobactin maturation protease"]],"b":[["amino_acids_and_peptides/patellamide-a.yaml","patellamide A"]]},{"id":"NCBITaxon:128403","l":"Scytonema hofmannii PCC 7110","na":1,"nb":6,"a":[["TED%3AAF-A0A139X3P3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A139X3P3-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/scytocyclamide-a.yaml","scytocyclamide A"],["amino_acids_and_peptides/scytocyclamide-a2.yaml","scytocyclamide A2"],["amino_acids_and_peptides/scytocyclamide-b.yaml","scytocyclamide B"],["amino_acids_and_peptides/scytocyclamide-b2.yaml","scytocyclamide B2"],["amino_acids_and_peptides/scytocyclamide-b3.yaml","scytocyclamide B3"],["amino_acids_and_peptides/scytocyclamide-c.yaml","scytocyclamide C"]]},{"id":"NCBITaxon:1402","l":"Bacillus licheniformis","na":6,"nb":1,"a":[["Pfam%3APF09154","Alpha-amylase C-terminal"],["Pfam%3APF10779","Haemolysin XhlA"],["Pfam%3APF12730","ABC-2 family transporter protein"],["Pfam%3APF08181","DegQ (SacQ) family"],["Pfam%3APF08057","Erythromycin resistance leader peptide"],["Pfam%3APF14867","Lantibiotic alpha"]],"b":[["amino_acids_and_peptides/bacitracin.yaml","bacitracin"]]},{"id":"NCBITaxon:1877","l":"Micromonospora echinospora","na":1,"nb":6,"a":[["Pfam%3APF07091","Ribosomal RNA methyltransferase (FmrO)"]],"b":[["carbohydrates/2-deoxystreptamine.yaml","2-deoxystreptamine"],["carbohydrates/gentamicin-2.yaml","gentamicin"],["carbohydrates/gentamicin.yaml","gentamicin"],["polyketides/1-6-dihydro-8-propylanthraquinone.yaml","1,6-dihydro-8-propylanthraquinone"],["polyketides/calicheamicin.yaml","calicheamicin"],["polyketides/tiacumicin-b.yaml","tiacumicin B"]]},{"id":"NCBITaxon:1920","l":"Streptomyces nigrescens","na":1,"nb":6,"a":[["Pfam%3APF03995","Peptidase inhibitor family I36"]],"b":[["alkaloids/5athq-10a.yaml","5aTHQ-10a"],["alkaloids/5athq-9i.yaml","5aTHQ-9i"],["alkaloids/5athq-9n.yaml","5aTHQ-9n"],["alkaloids/stams-9i.yaml","STAMs-9i"],["alkaloids/stams-9n.yaml","STAMs-9n"],["polyketides/phoslactomycin-b.yaml","phoslactomycin B"]]},{"id":"NCBITaxon:1930","l":"Streptomyces scabiei","na":1,"nb":6,"a":[["TED%3AAF-A0A086GLG9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A086GLG9-F1-model_v4_TED01"]],"b":[["alkaloids/nikkomycin-z.yaml","nikkomycin Z"],["amino_acids_and_peptides/thaxtomin-c.yaml","thaxtomin C"],["polyketides/oronofacic-acid.yaml","oronofacic acid"],["unclassified/n-coronafacoyl-l-isoleucine.yaml","N-coronafacoyl-L-isoleucine"],["unclassified/thaxtomin-a.yaml","thaxtomin A"],["unclassified/thaxtomin-b.yaml","thaxtomin B"]]},{"id":"NCBITaxon:278992","l":"Streptomyces ambofaciens ATCC 23877","na":1,"nb":6,"a":[["Pfam%3APF00553","Cellulose binding domain"]],"b":[["alkaloids/congocidine.yaml","congocidine"],["polyketides/spiramycin.yaml","spiramycin"],["polyketides/stambomycin-a.yaml","stambomycin A"],["polyketides/stambomycin-b.yaml","stambomycin B"],["polyketides/stambomycin-c.yaml","stambomycin C"],["polyketides/stambomycin-d.yaml","stambomycin D"]]},{"id":"NCBITaxon:4097","l":"Nicotiana tabacum","na":6,"nb":1,"a":[["Pfam%3APF02041","Auxin binding protein"],["Pfam%3APF12481","Aluminium induced protein"],["Pfam%3APF11995","Domain of unknown function (DUF3490)"],["Pfam%3APF07172","Glycine rich protein family"],["PROSITE%3APS00157","Ribulose bisphosphate carboxylase large chain active site"],["TED%3AAF-A0A1S4A696-F1-model_v4_TED01","TED novel fold AF-A0A1S4A696-F1-model_v4_TED01"]],"b":[["terpenoids/capsidiol.yaml","capsidiol"]]},{"id":"NCBITaxon:46472","l":"Aspergillus versicolor","na":1,"nb":6,"a":[["Pfam%3APF13810","Domain of unknown function (DUF4185)"]],"b":[["alkaloids/psychrophilin-f.yaml","psychrophilin F"],["alkaloids/psychrophilin-g.yaml","psychrophilin G"],["polyketides/sterigmatocystin.yaml","sterigmatocystin"],["unclassified/chevalone-e.yaml","chevalone E"],["unclassified/notoamide-a.yaml","notoamide A"],["unclassified/psychrophilin-h.yaml","psychrophilin H"]]},{"id":"NCBITaxon:5082","l":"Penicillium roqueforti","na":1,"nb":6,"a":[["Pfam%3APF07573","Nitrogen regulatory protein AreA N terminus"]],"b":[["alkaloids/mycophenolic-acid-2.yaml","mycophenolic acid"],["polyketides/mycophenolic-acid.yaml","mycophenolic acid"],["terpenoids/pr-toxin.yaml","PR-toxin"],["unclassified/andrastin-a.yaml","andrastin A"],["unclassified/roquefortine-c.yaml","roquefortine C"],["unclassified/roquefortine-d.yaml","roquefortine D"]]},{"id":"NCBITaxon:5833","l":"Plasmodium falciparum","na":6,"nb":1,"a":[["IDPO%3A0000037","molecular recognition display site"],["Pfam%3APF05403","Plasmodium histidine-rich protein (HRPII/III)"],["Pfam%3APF17986","EMP3-KAHRP-like N-terminal domain"],["Pfam%3APF03805","Cytoadherence-linked asexual protein"],["Pfam%3APF06589","Circumsporozoite-related antigen (CRA)"],["TED%3AAF-Q9U431-F1-model_v4_TED01","TED novel fold AF-Q9U431-F1-model_v4_TED01"]],"b":[["alkaloids/congocidine.yaml","congocidine"]]},{"id":"NCBITaxon:62977","l":"Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)","na":6,"nb":1,"a":[["Pfam%3APF03594","Benzoate membrane transport protein"],["Pfam%3APF27541","Citrate utilization protein B"],["Pfam%3APF05232","Chlorhexidine efflux transporter"],["PROSITE%3APS00083","Intradiol ring-cleavage dioxygenases signature"],["PROSITE%3APS00570","Bacterial ring hydroxylating dioxygenases alpha-subunit signature"],["Pfam%3APF11846","Virulence factor membrane-bound polymerase, C-terminal"]],"b":[["amino_acids_and_peptides/fimsbactin-a.yaml","fimsbactin A"]]},{"id":"NCBITaxon:78245","l":"Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)","na":6,"nb":1,"a":[["Pfam%3APF08882","Acetone carboxylase gamma subunit"],["Pfam%3APF19278","Hydantoinase/oxoprolinase C-terminal domain"],["Pfam%3APF05378","Hydantoinase/oxoprolinase N-terminal region"],["Pfam%3APF01968","Hydantoinase/oxoprolinase"],["Pfam%3APF02538","Hydantoinase B/oxoprolinase"],["TED%3AAF-A7IL68-F1-model_v4_TED01","TED highly-symmetric fold AF-A7IL68-F1-model_v4_TED01"]],"b":[["terpenoids/zeaxanthin.yaml","zeaxanthin"]]},{"id":"NCBITaxon:817","l":"Bacteroides fragilis","na":6,"nb":1,"a":[["Pfam%3APF16376","N-terminal domain of fragilysin"],["TED%3AAF-A0A412XR06-F1-model_v4_TED03","TED novel fold AF-A0A412XR06-F1-model_v4_TED03"],["TED%3AAF-A0A4V1EUI2-F1-model_v4_TED02","TED novel fold AF-A0A4V1EUI2-F1-model_v4_TED02"],["TED%3AAF-A0A5C6IXH5-F1-model_v4_TED01","TED novel fold AF-A0A5C6IXH5-F1-model_v4_TED01"],["TED%3AAF-A0A5C6L6G9-F1-model_v4_TED02","TED novel fold AF-A0A5C6L6G9-F1-model_v4_TED02"],["TED%3AAF-A0A642KY52-F1-model_v4_TED01","TED novel fold AF-A0A642KY52-F1-model_v4_TED01"]],"b":[["fatty_acids/galactosylceramide.yaml","α-galactosylceramide"]]},{"id":"NCBITaxon:882378","l":"","na":1,"nb":6,"a":[["Pfam%3APF01983","Guanylyl transferase CofC like"]],"b":[["amino_acids_and_peptides/endopyrrole-b.yaml","endopyrrole B"],["amino_acids_and_peptides/holrhizin-a.yaml","holrhizin A"],["amino_acids_and_peptides/holrhizin-b.yaml","holrhizin B"],["amino_acids_and_peptides/holrhizin-c.yaml","holrhizin C"],["amino_acids_and_peptides/holrhizin-d.yaml","holrhizin D"],["unclassified/endopyrrole-a.yaml","endopyrrole A"]]},{"id":"UniProt:Q9XUB2","l":"","na":6,"nb":1,"a":[["GO%3A0008187","poly-pyrimidine tract binding"],["InterPro%3AIPR000571","Zinc finger, CCCH-type"],["Pfam%3APF00642","Zinc finger C-x8-C-x5-C-x3-H type (and similar)"],["InterPro%3AIPR036855","Zinc finger, CCCH-type superfamily"],["PROSITE%3APS50103","Zinc finger C3H1-type profile"],["CATH%3A4.10.1000.10","Zinc finger, CCCH-type"]],"b":[["polyketides/pyrophen.yaml","pyrophen"]]},{"id":"CHEBI:27977","l":"","na":5,"nb":1,"a":[["EC%3A1.14.15.35","6-deoxyerythronolide B hydroxylase"],["EC%3A2.4.1.328","erythronolide mycarosyltransferase"],["RHEA%3A40299","6-deoxyerythronolide B + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = erythronolide B + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O"],["RHEA%3A41576","dTDP-beta-L-mycarose + erythronolide B = 3-O-alpha-L-mycarosylerythronolide B + dTDP + H(+)"],["MCSA%3A694","6-deoxyerythronolide B hydroxylase"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"CHEBI:58572","l":"N-[(5S)-5-ammonio-5-carboxylatopentanoyl]-L-cysteinyl-D-valinate","na":5,"nb":1,"a":[["EC%3A1.21.3.1","isopenicillin-N synthase"],["EC%3A6.3.2.26","N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase"],["RHEA%3A23196","L-2-aminoadipate + L-valine + L-cysteine + 3 ATP + H2O = N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine + 3 AMP + 3 diphosphate + 3 H(+)"],["RHEA%3A22428","N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine + O2 = isopenicillin N + 2 H2O"],["MCSA%3A145","isopenicillin-N synthase"]],"b":[["amino_acids_and_peptides/n-5s-5-ammonio-5-carboxylatopentanoyl-l-cysteinyl-d-valinate.yaml","N-[(5S)-5-ammonio-5-carboxylatopentanoyl]-L-cysteinyl-D-valinate"]]},{"id":"CHEBI:62219","l":"2-heptyl-4-quinolone","na":5,"nb":1,"a":[["EC%3A1.14.13.182","2-heptyl-3-hydroxy-4(1H)-quinolone synthase"],["EC%3A2.3.1.230","2-heptyl-4(1H)-quinolone synthase"],["RHEA%3A50408","1-(2-aminophenyl)decane-1,3-dione = 2-heptyl-4(1H)-quinolone + H2O"],["RHEA%3A50396","(2-aminobenzoyl)acetate + octanoyl-CoA + H(+) = 2-heptyl-4(1H)-quinolone + CO2 + CoA + H2O"],["RHEA%3A37871","2-heptyl-4(1H)-quinolone + NADH + O2 + H(+) = 2-heptyl-3-hydroxy-4(1H)-quinolone + NAD(+) + H2O"]],"b":[["alkaloids/2-heptylquinolin-4-1h-one.yaml","2-heptylquinolin-4(1H)-one"]]},{"id":"CHEBI:90888","l":"aurachin C","na":5,"nb":1,"a":[["EC%3A1.14.13.222","aurachin C monooxygenase/isomerase"],["RHEA%3A49000","aurachin C + NADH + O2 + H(+) = 4-hydroxy-2-methyl-3-oxo-4-[(2E,6E)-farnesyl]-3,4-dihydroquinoline 1-oxide + NAD(+) + H2O"],["RHEA%3A49012","aurachin C + NADH + O2 + H(+) = aurachin C epoxide + NAD(+) + H2O"],["RHEA%3A49004","aurachin C + NADPH + O2 + H(+) = 4-hydroxy-2-methyl-3-oxo-4-[(2E,6E)-farnesyl]-3,4-dihydroquinoline 1-oxide + NADP(+) + H2O"],["RHEA%3A49008","aurachin C + NADPH + O2 + H(+) = aurachin C epoxide + NADP(+) + H2O"]],"b":[["alkaloids/aurachin-c.yaml","aurachin C"]]},{"id":"DOI:10.1016/j.str.2007.12.020","l":"","na":5,"nb":1,"a":[["InterPro%3AIPR034136","Topoisomerase 6 subunit A/Spo11, TOPRIM domain"],["InterPro%3AIPR049333","Type II DNA topoisomerase VI subunit A, all-beta domain"],["NCBIfam%3ANF044616","All-beta domain in DNA topoisomerase VI alpha subunit"],["NCBIfam%3ANF044723","Topoisomerase 6 subunit A/Spo11, Toprim domain"],["PROSITE%3APDOC52041","Topoisomerase (Topo) IIB-type catalytic"]],"b":[["polyketides/radicicol.yaml","radicicol"]]},{"id":"DOI:10.1128/JB.181.13.4118-4124.1999","l":"","na":5,"nb":1,"a":[["InterPro%3AIPR024719","HpaB/PvcC/4-BUDH C-terminal"],["InterPro%3AIPR024674","HpaB/PvcC/4-BUDH N-terminal"],["NCBIfam%3ANF015214","4-hydroxyphenylacetate 3-hydroxylase C-terminal domain-containing protein"],["NCBIfam%3ANF023222","4-hydroxyphenylacetate 3-hydroxylase N-terminal domain-containing protein"],["NCBIfam%3ANF040299","DUF6011 domain-containing protein"]],"b":[["shikimates_and_phenylpropanoids/paerucumarin.yaml","paerucumarin"]]},{"id":"NCBITaxon:1063","l":"Cereibacter sphaeroides","na":5,"nb":1,"a":[["Pfam%3APF25323","PilS-like transmembrane domain"],["Pfam%3APF02963","Restriction endonuclease EcoRI"],["PROSITE%3APS00968","Antenna complexes alpha subunits signature"],["PROSITE%3APS00974","Mannitol dehydrogenases signature"],["PROSITE%3APS00567","Phosphoribulokinase signature"]],"b":[["terpenoids/carotenoid-2.yaml","carotenoid"]]},{"id":"NCBITaxon:1110502","l":"Tistrella mobilis KA081020-065","na":1,"nb":5,"a":[["TED%3AAF-I3TTD1-F1-model_v4_TED03","TED novel fold AF-I3TTD1-F1-model_v4_TED03"]],"b":[["unclassified/dehydrodidemnin-b-aplidine.yaml","dehydrodidemnin B (aplidine)"],["unclassified/didemnin-b.yaml","didemnin B"],["unclassified/didemnin-x.yaml","didemnin X"],["unclassified/didemnin-y.yaml","didemnin Y"],["unclassified/nordidemnin-b.yaml","nordidemnin B"]]},{"id":"NCBITaxon:1437453","l":"Streptomyces leeuwenhoekii","na":1,"nb":5,"a":[["TED%3AAF-A0A0F7VQ57-F1-model_v4_TED03","TED novel fold AF-A0A0F7VQ57-F1-model_v4_TED03"]],"b":[["amino_acids_and_peptides/leepeptin.yaml","Leepeptin"],["polyketides/chaxamycin-a.yaml","chaxamycin A"],["polyketides/chaxamycin-b.yaml","chaxamycin B"],["polyketides/chaxamycin-c.yaml","chaxamycin C"],["polyketides/chaxamycin-d.yaml","chaxamycin D"]]},{"id":"NCBITaxon:1465","l":"Brevibacillus laterosporus","na":1,"nb":5,"a":[["TED%3AAF-A0A0F7BZ24-F1-model_v4_TED01","TED novel fold AF-A0A0F7BZ24-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/bogorol-a.yaml","bogorol A"],["amino_acids_and_peptides/tauramamide.yaml","tauramamide"],["shikimates_and_phenylpropanoids/basiliskamide-a.yaml","Basiliskamide A"],["unclassified/basiliskamide-b.yaml","Basiliskamide B"],["unclassified/laterocidine.yaml","laterocidine"]]},{"id":"NCBITaxon:176275","l":"Beauveria bassiana","na":1,"nb":5,"a":[["TED%3AAF-A0A2S7Y157-F1-model_v4_TED02","TED novel fold AF-A0A2S7Y157-F1-model_v4_TED02"]],"b":[["alkaloids/desmethylbassianin.yaml","desmethylbassianin"],["alkaloids/tenellin.yaml","tenellin"],["polyketides/oosporein.yaml","oosporein"],["unclassified/bassianolide.yaml","bassianolide"],["unclassified/beauvericin.yaml","beauvericin"]]},{"id":"NCBITaxon:220664","l":"Pseudomonas protegens Pf-5","na":1,"nb":5,"a":[["Pfam%3APF18089","DAPG hydrolase PhiG domain"]],"b":[["alkaloids/pyoluteorin.yaml","pyoluteorin"],["polyketides/2-4-diacetylphloroglucinol.yaml","2,4-diacetylphloroglucinol"],["unclassified/orfamide-a.yaml","orfamide A"],["unclassified/orfamide-c.yaml","orfamide C"],["unclassified/pf-5-pyoverdine.yaml","Pf-5 pyoverdine"]]},{"id":"NCBITaxon:29303","l":"Streptomyces cattleya","na":1,"nb":5,"a":[["Pfam%3APF22636","Fluoroacetyl-CoA-specific thioesterase"]],"b":[["amino_acids_and_peptides/cattlecin.yaml","cattlecin"],["amino_acids_and_peptides/clavulanic-acid.yaml","clavulanic acid"],["amino_acids_and_peptides/ethynylserine.yaml","β-ethynylserine"],["amino_acids_and_peptides/thienamycin.yaml","thienamycin"],["terpenoids/cattleyene.yaml","cattleyene"]]},{"id":"NCBITaxon:380704","l":"Aspergillus niger ATCC 1015","na":1,"nb":5,"a":[["Pfam%3APF28387","BfoA N-terminal domain"]],"b":[["polyketides/azanigerone-a.yaml","azanigerone A"],["polyketides/campyrone-b.yaml","campyrone B"],["polyketides/pyranonigrin-e.yaml","pyranonigrin E"],["polyketides/pyrophen.yaml","pyrophen"],["terpenoids/yanuthone-d.yaml","yanuthone D"]]},{"id":"NCBITaxon:384","l":"Rhizobium leguminosarum","na":5,"nb":1,"a":[["Pfam%3APF10931","Protein of unknown function (DUF2735)"],["TED%3AAF-A0A1B1C3F3-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A1B1C3F3-F1-model_v4_TED02"],["TED%3AAF-A0A4Q8XNE1-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4Q8XNE1-F1-model_v4_TED01"],["TED%3AAF-A0A6P0B3F8-F1-model_v4_TED02","TED novel fold AF-A0A6P0B3F8-F1-model_v4_TED02"],["TED%3AAF-A0A6P0DM15-F1-model_v4_TED01","TED novel fold AF-A0A6P0DM15-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/vicibactin.yaml","vicibactin"]]},{"id":"NCBITaxon:4513","l":"Hordeum vulgare","na":5,"nb":1,"a":[["Pfam%3APF20241","Domain of unknown function (DUF6598)"],["PROSITE%3APS00771","Barwin domain signature 1"],["PROSITE%3APS00426","Cereal trypsin/alpha-amylase inhibitors family signature"],["PROSITE%3APS00725","Germin family signature"],["PROSITE%3APS00431","Small hydrophilic plant seed proteins signature"]],"b":[["unclassified/roquefortine-c.yaml","roquefortine C"]]},{"id":"NCBITaxon:47427","l":"Armillaria gallica","na":5,"nb":1,"a":[["TED%3AAF-A0A2H3CFH3-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A2H3CFH3-F1-model_v4_TED02"],["TED%3AAF-A0A2H3DFZ3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2H3DFZ3-F1-model_v4_TED01"],["TED%3AAF-A0A2H3DTE1-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A2H3DTE1-F1-model_v4_TED02"],["TED%3AAF-A0A2H3E1R0-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A2H3E1R0-F1-model_v4_TED02"],["TED%3AAF-A0A2H3CX67-F1-model_v4_TED02","TED novel fold AF-A0A2H3CX67-F1-model_v4_TED02"]],"b":[["terpenoids/8-hydroxy-6-protoilludene.yaml","8α-hydroxy-6-protoilludene"]]},{"id":"NCBITaxon:5454","l":"","na":5,"nb":1,"a":[["TED%3AAF-A0A162YC52-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A162YC52-F1-model_v4_TED01"],["TED%3AAF-A0A163JCD7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A163JCD7-F1-model_v4_TED01"],["TED%3AAF-A0A163LJZ7-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A163LJZ7-F1-model_v4_TED02"],["TED%3AAF-A0A163LQ36-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A163LQ36-F1-model_v4_TED01"],["TED%3AAF-A0A163M9G4-F1-model_v4_TED01","TED novel fold AF-A0A163M9G4-F1-model_v4_TED01"]],"b":[["polyketides/solanapyrone-a.yaml","solanapyrone A"]]},{"id":"UniProt:P22629","l":"","na":5,"nb":1,"a":[["proteintraitsmech%3ABIOLIP_4IR","4IR-binding site"],["proteintraitsmech%3ABIOLIP_HL9","HL9-binding site"],["proteintraitsmech%3ABIOLIP_ZOE","ZOE-binding site"],["proteintraitsmech%3AMETALPDB_RH_DINUCLEAR","dinuclear rhodium site"],["proteintraitsmech%3AMETALPDB_CO_TETRANUCLEAR","tetranuclear cobalt site"]],"b":[["alkaloids/biotin.yaml","biotin"]]},{"id":"CHEBI:140434","l":"3-[(Z)-2-isocyanovinyl]indole","na":4,"nb":1,"a":[["EC%3A1.14.20.11","3-[(Z)-2-isocyanoethenyl]-1H-indole synthase"],["EC%3A2.5.1.146","3-geranyl-3-[(Z)-2-isocyanoethenyl]indole synthase"],["RHEA%3A56700","(2S)-3-(1H-indol-3-yl)-2-isocyanopropanoate + 2-oxoglutarate + O2 + H(+) = 3-[(Z)-2-isocyanoethenyl]-1H-indole + succinate + 2 CO2 + H2O"],["RHEA%3A17349","3-[(Z)-2-isocyanoethenyl]-1H-indole + (2E)-geranyl diphosphate = 3-geranyl-3-[(Z)-2-isocyanoethenyl]-1H-indole + diphosphate"]],"b":[["alkaloids/3-z-2-isocyanovinyl-indole.yaml","3-[(Z)-2-isocyanovinyl]indole"]]},{"id":"CHEBI:140442","l":"12-epi-fischerindole U isonitrile","na":4,"nb":1,"a":[["EC%3A1.14.20.14","hapalindole-type alkaloid chlorinase"],["EC%3A5.5.1.33","12-epi-fischerindole U synthase"],["RHEA%3A56764","12-epi-fischerindole U + chloride + 2-oxoglutarate + O2 + H(+) = 12-epi-fischerindole G + succinate + CO2 + H2O"],["RHEA%3A56456","3-geranyl-3-[(Z)-2-isocyanoethenyl]-1H-indole = 12-epi-fischerindole U"]],"b":[["alkaloids/12-epi-fischerindole-u-isonitrile.yaml","12-epi-fischerindole U isonitrile"]]},{"id":"CHEBI:155910","l":"aculene D","na":4,"nb":1,"a":[["RHEA%3A65112","aculene D + 2-oxoglutarate + O2 = aculene C + succinate + CO2 + H2O"],["RHEA%3A65104","aculene D + L-prolyl-[peptidyl-carrier protein] = aculene B + holo-[peptidyl-carrier protein]"],["RHEA%3A65084","asperaculane E + 2 reduced [NADPH--hemoprotein reductase] + 2 O2 = aculene D + 2 oxidized [NADPH--hemoprotein reductase] + CO2 + 3 H2O + H(+)"],["RHEA%3A65092","asperaculane G + reduced [NADPH--hemoprotein reductase] + O2 = aculene D + oxidized [NADPH--hemoprotein reductase] + CO2 + 2 H2O"]],"b":[["terpenoids/aculene-d.yaml","aculene D"]]},{"id":"CHEBI:16368","l":"6-hydroxymellein","na":4,"nb":1,"a":[["EC%3A2.1.1.108","6-hydroxymellein O-methyltransferase"],["RHEA%3A65248","5 malonyl-CoA + AH2 + 5 H(+) = 6-hydroxymellein + A + 5 CO2 + 5 CoA + H2O"],["RHEA%3A65252","6-hydroxymellein + (2E,6E)-farnesyl diphosphate = verruculide C + diphosphate"],["RHEA%3A15201","6-hydroxymellein + S-adenosyl-L-methionine = 6-methoxymellein + S-adenosyl-L-homocysteine + H(+)"]],"b":[["shikimates_and_phenylpropanoids/6-hydroxymellein.yaml","6-hydroxymellein"]]},{"id":"CHEBI:18048","l":"DIMBOA","na":4,"nb":1,"a":[["EC%3A2.4.1.202","2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one 2-D- glucosyltransferase"],["EC%3A3.2.1.182","4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase"],["RHEA%3A33975","DIMBOA beta-D-glucoside + H2O = DIMBOA + D-glucose"],["RHEA%3A15541","DIMBOA + UDP-alpha-D-glucose = DIMBOA beta-D-glucoside + UDP + H(+)"]],"b":[["alkaloids/dimboa.yaml","DIMBOA"]]},{"id":"CHEBI:18227","l":"sterigmatocystin","na":4,"nb":1,"a":[["EC%3A2.1.1.109","demethylsterigmatocystin 6-O-methyltransferase"],["EC%3A2.1.1.110","sterigmatocystin 8-O-methyltransferase"],["RHEA%3A11504","6-demethylsterigmatocystin + S-adenosyl-L-methionine = sterigmatocystin + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A15561","sterigmatocystin + S-adenosyl-L-methionine = 8-O-methylsterigmatocystin + S-adenosyl-L-homocysteine + H(+)"]],"b":[["polyketides/sterigmatocystin.yaml","sterigmatocystin"]]},{"id":"CHEBI:2448","l":"actinorhodin","na":4,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"],["proteintraitsmech%3ABIOLIP_ZCT","ZCT-binding site"]],"b":[["polyketides/actinorhodin.yaml","actinorhodin"]]},{"id":"CHEBI:4356","l":"desferrioxamine B","na":4,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_4356","requires desferrioxamine B"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A1.B.14","The Outer Membrane Receptor (OMR) Family"],["proteintraitsmech%3ABIOLIP_KTY","KTY-binding site"]],"b":[["fatty_acids/desferrioxamine-b.yaml","desferrioxamine B"]]},{"id":"CHEBI:51460","l":"albaflavenone","na":4,"nb":1,"a":[["EC%3A1.14.15.39","epi-isozizaene 5-monooxygenase"],["RHEA%3A25988","(5R)-albaflavenol + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = albaflavenone + 2 oxidized [2Fe-2S]-[ferredoxin] + 2 H2O"],["RHEA%3A25980","(5S)-albaflavenol + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = albaflavenone + 2 oxidized [2Fe-2S]-[ferredoxin] + 2 H2O"],["RHEA%3A32439","(+)-epi-isozizaene + 4 reduced [2Fe-2S]-[ferredoxin] + 2 O2 + 4 H(+) = albaflavenone + 4 oxidized [2Fe-2S]-[ferredoxin] + 3 H2O"]],"b":[["terpenoids/albaflavenone.yaml","albaflavenone"]]},{"id":"CHEBI:63282","l":"pseudaminate","na":4,"nb":1,"a":[["EC%3A2.5.1.97","pseudaminic acid synthase"],["EC%3A2.7.7.81","pseudaminic acid cytidylyltransferase"],["RHEA%3A31631","2,4-diacetamido-2,4,6-trideoxy-beta-L-altrose + phosphoenolpyruvate + H2O = pseudaminate + phosphate"],["RHEA%3A32083","pseudaminate + CTP = CMP-pseudaminate + diphosphate"]],"b":[["carbohydrates/pseudaminate.yaml","pseudaminate"]]},{"id":"CHEBI:64258","l":"","na":4,"nb":1,"a":[["EC%3A1.14.13.154","erythromycin 12 hydroxylase"],["EC%3A2.1.1.254","erythromycin 3'-O-methyltransferase"],["RHEA%3A32647","erythromycin C + S-adenosyl-L-methionine = erythromycin A + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A32631","erythromycin D + NADPH + O2 + H(+) = erythromycin C + NADP(+) + H2O"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"CHEBI:79296","l":"indigoidine","na":4,"nb":1,"a":[["EC%3A4.3.3.9","indigoidine synthase"],["RHEA%3A81507","2 3-amino-1,5-dihydropyridine-2,6-dione + O2 = indigoidine + 2 H2O"],["RHEA%3A81499","2 FMN + 2 L-glutamine + 2 ATP + O2 = indigoidine + 2 FMNH2 + 2 AMP + 2 diphosphate + 2 H2O"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"]],"b":[["alkaloids/indigoidine.yaml","indigoidine"]]},{"id":"CHEBI:9555","l":"tioguanine","na":4,"nb":1,"a":[["EC%3A2.1.1.67","thiopurine S-methyltransferase"],["RHEA%3A56580","6-thioguanine + S-adenosyl-L-methionine = 6-methylthioguanine + S-adenosyl-L-homocysteine + H(+)"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.40","The Nucleobase/Ascorbate Transporter (NAT) or Nucleobase:Cation Symporter-2 (NCS2) Family"]],"b":[["alkaloids/tioguanine.yaml","tioguanine"]]},{"id":"DOI:10.1021/ja312503y","l":"","na":4,"nb":1,"a":[["RHEA%3A74587","(2E,6E)-farnesyl diphosphate = (+)-exo-beta-bergamotene + diphosphate"],["RHEA%3A74751","fumagillol + dodecapentaneoyl-[polyketide synthase] = prefumagillin + holo-[polyketide synthase]"],["RHEA%3A74727","holo-[polyketide synthase] + 5 malonyl-CoA + acetyl-CoA + 5 NADPH + 10 H(+) = dodecapentaneoyl-[polyketide synthase] + 5 CO2 + 5 NADP(+) + 6 CoA + 5 H2O"],["NCBIfam%3ANF025196","monooxygenase family protein"]],"b":[["polyketides/fumagillin.yaml","fumagillin"]]},{"id":"DOI:10.1128/JB.183.21.6454-6465.2001","l":"","na":4,"nb":1,"a":[["RHEA%3A49456","(2S)-2-amino-4-deoxychorismate + H2O = (5S,6S)-6-amino-5-hydroxycyclohexa-1,3-diene-1-carboxyate + pyruvate"],["RHEA%3A48976","5-methyl-phenazine-1-carboxylate + NADH + O2 + 2 H(+) = pyocyanin + CO2 + NAD(+) + H2O"],["RHEA%3A53868","phenazine-1-carboxylate + NADH + O2 + 2 H(+) = 1-hydroxyphenazine + CO2 + NAD(+) + H2O"],["NCBIfam%3ANF038138","phenazine biosynthesis FMN-dependent oxidase PhzG"]],"b":[["alkaloids/pyocyanine.yaml","pyocyanine"]]},{"id":"NCBITaxon:101028","l":"Fusarium pseudograminearum","na":1,"nb":4,"a":[["TED%3AAF-A0A7S8DXW2-F1-model_v4_TED02","TED novel fold AF-A0A7S8DXW2-F1-model_v4_TED02"]],"b":[["alkaloids/8-oxo-fusatin.yaml","8-oxo-fusatin"],["alkaloids/8-oxo-isopentenyladenine.yaml","8-oxo-isopentenyladenine"],["alkaloids/fusatin.yaml","fusatin"],["alkaloids/fusatinic-acid.yaml","fusatinic acid"]]},{"id":"NCBITaxon:1038928","l":"Streptomyces xinghaiensis","na":1,"nb":4,"a":[["TED%3AAF-A0A3R7FP99-F1-model_v4_TED01","TED novel fold AF-A0A3R7FP99-F1-model_v4_TED01"]],"b":[["alkaloids/dixiamycin-a.yaml","dixiamycin A"],["alkaloids/xiamycin-a.yaml","xiamycin A"],["fatty_acids/desferrioxamine-b.yaml","desferrioxamine B"],["polyketides/oligomycin.yaml","oligomycin"]]},{"id":"NCBITaxon:112509","l":"Hordeum vulgare subsp. vulgare","na":1,"nb":4,"a":[["IDPO%3A0000004","pre-molten globule"]],"b":[["fatty_acids/diketones.yaml","β-Diketones"],["terpenoids/11-hydroxy-hordetriene.yaml","11-hydroxy-hordetriene"],["terpenoids/hordediene.yaml","hordediene"],["terpenoids/hordetriene.yaml","hordetriene"]]},{"id":"NCBITaxon:1311","l":"Streptococcus agalactiae","na":4,"nb":1,"a":[["Pfam%3APF19567","Capsular polysaccharide synthesis, CpsB/CapC"],["Pfam%3APF16828","GAG-binding domain on surface antigen"],["Pfam%3APF27244","GtfB middle domain"],["Pfam%3APF07373","CAMP factor (Cfa)"]],"b":[["carbohydrates/capsular-polysaccharide-3.yaml","capsular polysaccharide"]]},{"id":"NCBITaxon:1813822","l":"Xylariales sp. No.14919","na":4,"nb":1,"a":[["TED%3AAF-A0A1V1SW90-F1-model_v4_TED01","TED novel fold AF-A0A1V1SW90-F1-model_v4_TED01"],["TED%3AAF-A0A1V1T5K0-F1-model_v4_TED01","TED novel fold AF-A0A1V1T5K0-F1-model_v4_TED01"],["TED%3AAF-A0A1V1TFW0-F1-model_v4_TED03","TED novel fold AF-A0A1V1TFW0-F1-model_v4_TED03"],["TED%3AAF-A0A1V1THH5-F1-model_v4_TED03","TED novel fold AF-A0A1V1THH5-F1-model_v4_TED03"]],"b":[["polyketides/fr901512.yaml","FR901512"]]},{"id":"NCBITaxon:1944","l":"Streptomyces halstedii","na":1,"nb":4,"a":[["Pfam%3APF09277","Erythronolide synthase, docking"]],"b":[["alkaloids/rotihibin-a.yaml","rotihibin A"],["polyketides/halstoctacosanolide-a.yaml","halstoctacosanolide A"],["terpenoids/geosmin.yaml","(−)-geosmin"],["unclassified/vicenistatin.yaml","vicenistatin"]]},{"id":"NCBITaxon:1967","l":"Streptomyces kanamyceticus","na":1,"nb":4,"a":[["Pfam%3APF13579","Glycosyl transferase 4-like domain"]],"b":[["amino_acids_and_peptides/gausemycin-a.yaml","gausemycin A"],["amino_acids_and_peptides/gausemycin-b.yaml","gausemycin B"],["carbohydrates/2-deoxystreptamine.yaml","2-deoxystreptamine"],["carbohydrates/kanamycin-a.yaml","kanamycin A"]]},{"id":"NCBITaxon:2017","l":"Streptoalloteichus hindustanus","na":1,"nb":4,"a":[["Pfam%3APF19581","Glyoxalase superfamily protein"]],"b":[["amino_acids_and_peptides/tallysomycin-a.yaml","tallysomycin A"],["amino_acids_and_peptides/tallysomycin-b.yaml","tallysomycin B"],["carbohydrates/apramycin.yaml","apramycin"],["carbohydrates/tobramycin.yaml","tobramycin"]]},{"id":"NCBITaxon:2045","l":"Nocardioides simplex","na":4,"nb":1,"a":[["Pfam%3APF00775","Dioxygenase"],["Pfam%3APF04444","Catechol dioxygenase N terminus"],["PROSITE%3APS00083","Intradiol ring-cleavage dioxygenases signature"],["TED%3AAF-A0A4Y3NBY1-F1-model_v4_TED01","TED novel fold AF-A0A4Y3NBY1-F1-model_v4_TED01"]],"b":[["carbohydrates/2-amino-2-deoxyadenosine.yaml","2'-amino-2'-deoxyadenosine"]]},{"id":"NCBITaxon:226900","l":"Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)","na":4,"nb":1,"a":[["IDPO%3A0000060","self-assembly"],["Pfam%3APF13535","ATP-grasp domain"],["Pfam%3APF14436","Bacterial EndoU nuclease"],["Pfam%3APF10803","Spore germination GerPB"]],"b":[["amino_acids_and_peptides/thiocillin-i.yaml","thiocillin I"]]},{"id":"NCBITaxon:267608","l":"Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)","na":4,"nb":1,"a":[["Pfam%3APF13473","Cupredoxin-like domain"],["Pfam%3APF09483","Type III secretion protein (HpaP)"],["Pfam%3APF14897","EpsG family"],["Pfam%3APF03377","TAL effector repeat"]],"b":[["unclassified/micacocidin.yaml","micacocidin"]]},{"id":"NCBITaxon:269797","l":"Methanosarcina barkeri str. Fusaro","na":4,"nb":1,"a":[["Pfam%3APF27274","Coenzyme F430 synthetase CfbE, C-terminal domain"],["Pfam%3APF02552","CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit"],["Pfam%3APF09505","Dimethylamine methyltransferase (Dimeth_PyL)"],["PROSITE%3APS00507","Nickel-dependent hydrogenases large subunit signature 1"]],"b":[["alkaloids/coenzyme-f430.yaml","coenzyme F430"]]},{"id":"NCBITaxon:28447","l":"Clavibacter michiganensis","na":4,"nb":1,"a":[["TED%3AAF-A0A251YC11-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A251YC11-F1-model_v4_TED02"],["TED%3AAF-A0A2S5VA57-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2S5VA57-F1-model_v4_TED01"],["TED%3AAF-A0A2S5VJK2-F1-model_v4_TED01","TED novel fold AF-A0A2S5VJK2-F1-model_v4_TED01"],["TED%3AAF-A0A399NHQ8-F1-model_v4_TED01","TED novel fold AF-A0A399NHQ8-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/michiganin-a.yaml","michiganin A"]]},{"id":"NCBITaxon:28450","l":"Burkholderia pseudomallei","na":4,"nb":1,"a":[["Pfam%3APF18664","CdiA C-terminal tRNase domain"],["Pfam%3APF12106","Colicin E5 ribonuclease domain"],["Pfam%3APF11480","Colicin-E5 Imm protein"],["Pfam%3APF13332","Hemagglutinin repeat"]],"b":[["polyketides/malleilactone.yaml","malleilactone"]]},{"id":"NCBITaxon:318586","l":"Paracoccus denitrificans Pd1222","na":4,"nb":1,"a":[["Pfam%3APF27518","Heme exporter protein C"],["Pfam%3APF22039","Imidazolonepropionase-like composite domain, bacteria"],["PROSITE%3APS01181","Ribosomal protein S21 signature"],["Pfam%3APF02239","Cytochrome D1 heme domain"]],"b":[["alkaloids/parabactin.yaml","parabactin"]]},{"id":"NCBITaxon:34073","l":"Variovorax paradoxus","na":1,"nb":4,"a":[["TED%3AAF-A0A679J1E9-F1-model_v4_TED01","TED novel fold AF-A0A679J1E9-F1-model_v4_TED01"]],"b":[["unclassified/vacidobactin-a.yaml","vacidobactin A"],["unclassified/vacidobactin-b.yaml","vacidobactin B"],["unclassified/variobactin-a.yaml","variobactin A"],["unclassified/variobactin-b.yaml","variobactin B"]]},{"id":"NCBITaxon:40602","l":"Claviceps fusiformis","na":1,"nb":4,"a":[["Pfam%3APF06766","Fungal hydrophobin"]],"b":[["alkaloids/agroclavine-i.yaml","Agroclavine I"],["alkaloids/elymoclavine.yaml","elymoclavine"],["alkaloids/ergocryptine.yaml","α-ergocryptine"],["alkaloids/ergotamine.yaml","ergotamine"]]},{"id":"NCBITaxon:43662","l":"Pseudoalteromonas piscicida","na":1,"nb":4,"a":[["Pfam%3APF08329","Chitinase A, N-terminal domain"]],"b":[["alkaloids/2-3-4-5-tetrabromopyrrole.yaml","2,3,4,5-tetrabromopyrrole"],["alkaloids/myxochelin-a.yaml","myxochelin A"],["alkaloids/myxochelin-b-2.yaml","myxochelin B"],["alkaloids/pseudochelin-a.yaml","pseudochelin A"]]},{"id":"NCBITaxon:497965","l":"","na":4,"nb":1,"a":[["TED%3AAF-E0UJA0-F1-model_v4_TED01","TED highly-symmetric fold AF-E0UJA0-F1-model_v4_TED01"],["TED%3AAF-E0U6M3-F1-model_v4_TED03","TED novel fold AF-E0U6M3-F1-model_v4_TED03"],["TED%3AAF-E0UE39-F1-model_v4_TED02","TED novel fold AF-E0UE39-F1-model_v4_TED02"],["TED%3AAF-E0UM93-F1-model_v4_TED01","TED novel fold AF-E0UM93-F1-model_v4_TED01"]],"b":[["fatty_acids/1-heptadecene.yaml","1-heptadecene"]]},{"id":"NCBITaxon:5083","l":"Penicillium canescens","na":1,"nb":4,"a":[["Pfam%3APF09206","Alpha-L-arabinofuranosidase B, catalytic"]],"b":[["alkaloids/agroclavine-i.yaml","Agroclavine I"],["unclassified/outovirin-a.yaml","outovirin A"],["unclassified/outovirin-c.yaml","outovirin C"],["unclassified/penitrem-a.yaml","penitrem A"]]},{"id":"NCBITaxon:512","l":"Alcaligenes sp","na":4,"nb":1,"a":[["Pfam%3APF26354","N,N-dimethylformamidase alpha subunit"],["Pfam%3APF20254","N,N-dimethylformamidase beta subunit-like, C-terminal"],["Pfam%3APF11606","Family 31 carbohydrate binding protein"],["PROSITE%3APS00570","Bacterial ring hydroxylating dioxygenases alpha-subunit signature"]],"b":[["polyketides/kalimantacin-a.yaml","kalimantacin A"]]},{"id":"NCBITaxon:5353","l":"Lentinula edodes","na":4,"nb":1,"a":[["Pfam%3APF21671","Protein CPL1-like"],["Pfam%3APF16850","Peptidase inhibitor I66"],["TED%3AAF-A0A1Q3EBL0-F1-model_v4_TED01","TED novel fold AF-A0A1Q3EBL0-F1-model_v4_TED01"],["TED%3AAF-A0A1Q3ENK4-F1-model_v4_TED01","TED novel fold AF-A0A1Q3ENK4-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/lentinulin-a.yaml","lentinulin A"]]},{"id":"NCBITaxon:5516","l":"Fusarium culmorum","na":1,"nb":4,"a":[["TED%3AAF-A0A2T4GUL3-F1-model_v4_TED01","TED novel fold AF-A0A2T4GUL3-F1-model_v4_TED01"]],"b":[["polyketides/zearalenone.yaml","zearalenone"],["terpenoids/15-acetyldeoxynivalenol.yaml","15-acetyldeoxynivalenol"],["terpenoids/culmorin.yaml","culmorin"],["terpenoids/nivalenol.yaml","nivalenol"]]},{"id":"NCBITaxon:655819","l":"Beauveria bassiana ARSEF 2860","na":1,"nb":4,"a":[["Pfam%3APF22354","Hydrophobin"]],"b":[["polyketides/oosporein.yaml","oosporein"],["unclassified/beauverolide-ba.yaml","beauverolide Ba"],["unclassified/beauverolide-ca.yaml","beauverolide Ca"],["unclassified/beauverolide-ka.yaml","beauverolide Ka"]]},{"id":"NCBITaxon:668","l":"Aliivibrio fischeri","na":4,"nb":1,"a":[["PROSITE%3APS00949","Autoinducer synthase family signature"],["PROSITE%3APS00494","Bacterial luciferase subunits signature"],["PROSITE%3APS00607","cAMP phosphodiesterases class-II signature"],["TED%3AAF-A0A844NWZ1-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A844NWZ1-F1-model_v4_TED02"]],"b":[["unclassified/ape-vf.yaml","APE Vf"]]},{"id":"NCBITaxon:76728","l":"Streptomyces vitaminophilus","na":1,"nb":4,"a":[["TED%3AAF-A0A0T6LRN4-F1-model_v4_TED01","TED novel fold AF-A0A0T6LRN4-F1-model_v4_TED01"]],"b":[["alkaloids/pyrrolomycin-a.yaml","pyrrolomycin A"],["alkaloids/pyrrolomycin-b.yaml","pyrrolomycin B"],["alkaloids/pyrrolomycin-c.yaml","pyrrolomycin C"],["alkaloids/pyrrolomycin-d.yaml","pyrrolomycin D"]]},{"id":"NCBITaxon:85698","l":"","na":4,"nb":1,"a":[["Pfam%3APF25975","CzcB C-terminal circularly permuted SH3-like domain"],["Pfam%3APF17524","Anti-sigma factor CnrY"],["Pfam%3APF10778","Halocarboxylic acid dehydrogenase DehI"],["TED%3AAF-A0A1R1JVF9-F1-model_v4_TED03","TED highly-symmetric fold AF-A0A1R1JVF9-F1-model_v4_TED03"]],"b":[["amino_acids_and_peptides/alcaligin.yaml","alcaligin"]]},{"id":"NCBITaxon:933388","l":"Penicillium oxalicum (strain 114-2 / CGMCC 5302)","na":4,"nb":1,"a":[["Pfam%3APF27751","ATEG_07667 C-terminal domain"],["Pfam%3APF11402","Antifungal protein"],["Pfam%3APF12311","Protein of unknown function (DUF3632)"],["TED%3AAF-S8ATN5-F1-model_v4_TED01","TED highly-symmetric fold AF-S8ATN5-F1-model_v4_TED01"]],"b":[["unclassified/atpenin-b.yaml","atpenin B"]]},{"id":"NCBITaxon:93625","l":"Psilocybe cyanescens","na":4,"nb":1,"a":[["Pfam%3APF02958","Ecdysteroid kinase-like family"],["TED%3AAF-A0A409XLW7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A409XLW7-F1-model_v4_TED01"],["TED%3AAF-A0A409XPY8-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A409XPY8-F1-model_v4_TED01"],["TED%3AAF-A0A409XED8-F1-model_v4_TED01","TED novel fold AF-A0A409XED8-F1-model_v4_TED01"]],"b":[["alkaloids/psilocybin.yaml","psilocybin"]]},{"id":"UniProt:P02701","l":"","na":4,"nb":1,"a":[["Pfam%3APF01382","Avidin family"],["PROSITE%3APS00577","Avidin-like domain signature"],["proteintraitsmech%3ABIOLIP_B1R","B1R-binding site"],["proteintraitsmech%3ABIOLIP_BTN","BTN-binding site"]],"b":[["alkaloids/biotin.yaml","biotin"]]},{"id":"UniProt:P62593","l":"","na":4,"nb":1,"a":[["proteintraitsmech%3AMEROPS_CLEAVAGE_M50_004","RseP peptidase cleavage specificity"],["Pfam%3APF13354","Beta-lactamase enzyme family"],["PROSITE%3APS00146","Beta-lactamase class-A active site"],["MCSA%3A2","beta-lactamase (Class A)"]],"b":[["amino_acids_and_peptides/clavulanic-acid-2.yaml","clavulanic acid"]]},{"id":"UniProt:Q00441","l":"","na":4,"nb":1,"a":[["EC%3A1.14.15.35","6-deoxyerythronolide B hydroxylase"],["RHEA%3A40299","6-deoxyerythronolide B + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = erythronolide B + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O"],["MCSA%3A694","6-deoxyerythronolide B hydroxylase"],["proteintraitsmech%3ABIOLIP_9AP","9AP-binding site"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"UniProt:Q8TDV0","l":"","na":4,"nb":1,"a":[["ComplexPortal%3ACPX-16132","-"],["ComplexPortal%3ACPX-17565","-"],["ComplexPortal%3ACPX-24374","-"],["CDD%3Acd15002","7tmA_GPR151"]],"b":[["carbohydrates/tobramycin.yaml","tobramycin"]]},{"id":"UniProt:Q9Y243","l":"","na":4,"nb":1,"a":[["ComplexPortal%3ACPX-22352","-"],["ComplexPortal%3ACPX-24286","-"],["CDD%3Acd05593","STKc_PKB_gamma"],["InterPro%3AIPR034675","Protein kinase B gamma, catalytic domain"]],"b":[["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"CHEBI:131914","l":"violacein","na":3,"nb":1,"a":[["RHEA%3A49720","protoviolaceinate + NADH + 2 O2 + 2 H(+) = violacein + CO2 + NAD(+) + 2 H2O"],["RHEA%3A49728","protoviolaceinate + NADPH + 2 O2 + 2 H(+) = violacein + CO2 + NADP(+) + 2 H2O"],["RHEA%3A49732","violaceinate + O2 + H(+) = violacein + CO2 + H2O"]],"b":[["alkaloids/violacein.yaml","violacein"]]},{"id":"CHEBI:133763","l":"YWA1","na":3,"nb":1,"a":[["RHEA%3A62652","6 malonyl-CoA + acetyl-CoA + 6 H(+) = naphtopyrone YWA1 + 6 CO2 + 7 CoA + H2O"],["RHEA%3A62700","naphtopyrone YWA1 + H2O = naphthalene-1,3,6,8-tetrol + acetoacetate + H(+)"],["RHEA%3A62680","naphtopyrone YWA1 = norrubrofusarin + H2O + H(+)"]],"b":[["polyketides/ywa1.yaml","YWA1"]]},{"id":"CHEBI:138046","l":"sesterfisherol","na":3,"nb":1,"a":[["EC%3A4.2.3.176","sesterfisherol synthase"],["RHEA%3A54068","(2E,6E,10E,14E)-geranylfarnesyl diphosphate + H2O = sesterfisherol + diphosphate"],["RHEA%3A78407","sesterfisherol + 3 reduced [NADPH--hemoprotein reductase] + 3 O2 = sesterfisherate + 3 oxidized [NADPH--hemoprotein reductase] + 4 H2O + 4 H(+)"]],"b":[["terpenoids/sesterfisherol.yaml","sesterfisherol"]]},{"id":"CHEBI:18393","l":"naphthalene-1,3,8-triol","na":3,"nb":1,"a":[["EC%3A4.2.1.94","scytalone dehydratase"],["RHEA%3A24396","scytalone = 1,3,8-trihydroxynaphthalene + H2O"],["MCSA%3A910","scytalone dehydratase"]],"b":[["polyketides/naphthalene-1-3-8-triol.yaml","naphthalene-1,3,8-triol"]]},{"id":"CHEBI:28915","l":"fosfomycin","na":3,"nb":1,"a":[["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A1.B.5","The Pseudomonas OprP Porin (POP) Family"],["proteintraitsmech%3ABIOLIP_FCN","FCN-binding site"]],"b":[["unclassified/fosfomycin.yaml","fosfomycin"]]},{"id":"CHEBI:29472","l":"2-heptyl-3-hydroxy-4-quinolone","na":3,"nb":1,"a":[["EC%3A1.14.13.182","2-heptyl-3-hydroxy-4(1H)-quinolone synthase"],["RHEA%3A60352","2-heptyl-3-hydroxy-4(1H)-quinolone + O2 = N-octanoylanthranilate + CO + H(+)"],["RHEA%3A37871","2-heptyl-4(1H)-quinolone + NADH + O2 + H(+) = 2-heptyl-3-hydroxy-4(1H)-quinolone + NAD(+) + H2O"]],"b":[["alkaloids/2-heptyl-3-hydroxy-4-quinolone.yaml","2-heptyl-3-hydroxy-4-quinolone"]]},{"id":"CHEBI:3139","l":"bleomycin A2","na":3,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A9.A.18","The Peptide Uptake Permease (PUP) Family"]],"b":[["amino_acids_and_peptides/bleomycin-a2.yaml","bleomycin A2"]]},{"id":"CHEBI:31432","l":"corynebactin","na":3,"nb":1,"a":[["RHEA%3A33811","3 2,3-dihydroxybenzoate + 3 L-threonine + 3 glycine + 6 ATP = corynebactin + 6 AMP + 6 diphosphate + 3 H2O + 3 H(+)"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"]],"b":[["unclassified/corynebactin.yaml","corynebactin"]]},{"id":"CHEBI:31550","l":"epothilone B","na":3,"nb":1,"a":[["RHEA%3A47808","epothilone D + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = epothilone B + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["proteintraitsmech%3ABIOLIP_EPB","EPB-binding site"]],"b":[["unclassified/epothilone-b.yaml","epothilone B"]]},{"id":"CHEBI:40968","l":"astaxanthin","na":3,"nb":1,"a":[["EC%3A1.14.99.64","zeaxanthin 4-ketolase"],["RHEA%3A56772","all-trans-adonixanthin + 2 AH2 + 2 O2 = all-trans-(3S,3'S)-astaxanthin + 2 A + 3 H2O"],["proteintraitsmech%3ABIOLIP_AXT","AXT-binding site"]],"b":[["terpenoids/astaxanthin.yaml","astaxanthin"]]},{"id":"CHEBI:46702","l":"(−)-geosmin","na":3,"nb":1,"a":[["EC%3A4.1.99.16","geosmin synthase"],["RHEA%3A30371","(1E,4S,5E,7R)-germacra-1(10),5-dien-11-ol + H2O = (-)-geosmin + acetone"],["RHEA%3A30455","(1S,4aS)-1,4a-dimethyl-1,2,3,4,4a,5,6,8a-octahydronaphthalene + H2O = (-)-geosmin"]],"b":[["terpenoids/geosmin.yaml","(−)-geosmin"]]},{"id":"CHEBI:48741","l":"β-phellandrene","na":3,"nb":1,"a":[["EC%3A4.2.3.51","beta-phellandrene synthase (neryl-diphosphate-cyclizing)"],["RHEA%3A25504","(2E)-geranyl diphosphate = beta-phellandrene + diphosphate"],["RHEA%3A27830","neryl diphosphate = beta-phellandrene + diphosphate"]],"b":[["terpenoids/phellandrene.yaml","β-phellandrene"]]},{"id":"CHEBI:50432","l":"putrebactin","na":3,"nb":1,"a":[["EC%3A6.3.2.63","putrebactin synthase"],["RHEA%3A79279","2 N-(3-carboxypropanoyl)-N-hydroxyputrescine + 2 ATP = putrebactin + 2 AMP + 2 diphosphate + 2 H(+)"],["RHEA%3A79287","pre-putrebactin + ATP = putrebactin + AMP + diphosphate + H(+)"]],"b":[["amino_acids_and_peptides/putrebactin.yaml","putrebactin"]]},{"id":"CHEBI:63468","l":"tirucalla-7,24-dien-3β-ol","na":3,"nb":1,"a":[["EC%3A5.4.99.56","tirucalladienol synthase"],["RHEA%3A31887","(S)-2,3-epoxysqualene = tirucalla-7,24-dien-3beta-ol"],["RHEA%3A80279","tirucalla-7,24-dien-3beta-ol + 2 reduced [NADPH--hemoprotein reductase] + 2 O2 = dihydroniloticin + 2 oxidized [NADPH--hemoprotein reductase] + 2 H2O + 2 H(+)"]],"b":[["terpenoids/tirucalla-7-24-dien-3-ol.yaml","tirucalla-7,24-dien-3β-ol"]]},{"id":"CHEBI:6472","l":"lincomycin","na":3,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["proteintraitsmech%3ABIOLIP_3QB","3QB-binding site"]],"b":[["carbohydrates/lincomycin.yaml","lincomycin"]]},{"id":"CHEBI:71609","l":"albonoursin","na":3,"nb":1,"a":[["EC%3A1.3.3.13","albonoursin synthase"],["RHEA%3A35531","cyclo(L-phenylalanyl-L-leucyl) + 2 O2 = albonoursin + 2 H2O2"],["RHEA%3A35539","cyclo[(Z)-alpha,beta-didehydrophenylalanyl-L-leucyl] + O2 = albonoursin + H2O2"]],"b":[["unclassified/albonoursin.yaml","albonoursin"]]},{"id":"CHEBI:7719","l":"ochratoxin A","na":3,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.60","The Organo Anion Transporter (OAT) 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domain"]],"b":[["amino_acids_and_peptides/streptide.yaml","streptide"]]},{"id":"NCBITaxon:324833","l":"Streptomyces lasaliensis","na":1,"nb":3,"a":[["TED%3AAF-A0A4U5W597-F1-model_v4_TED01","TED novel fold AF-A0A4U5W597-F1-model_v4_TED01"]],"b":[["polyketides/lasalocid-2.yaml","lasalocid"],["polyketides/lasalocid.yaml","lasalocid"],["unclassified/echinomycin.yaml","echinomycin"]]},{"id":"NCBITaxon:33203","l":"Purpureocillium lilacinum","na":1,"nb":3,"a":[["TED%3AAF-A0A2U3ENJ6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2U3ENJ6-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/leucinostatin-a.yaml","leucinostatin A"],["amino_acids_and_peptides/leucinostatin-b.yaml","leucinostatin B"],["polyketides/patulin.yaml","patulin"]]},{"id":"NCBITaxon:347834","l":"Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)","na":3,"nb":1,"a":[["Pfam%3APF02632","BioY family"],["proteintraitsmech%3AELIFE109154_VbsL","Vicibactin acyl-hydroxyornithine epimerase 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H2O"]],"b":[["terpenoids/aculene-c.yaml","aculene C"]]},{"id":"CHEBI:15956","l":"biotin","na":2,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_15956","requires biotin"],["proteintraitsmech%3ABIOLIP_BTN","BTN-binding site"]],"b":[["alkaloids/biotin.yaml","biotin"]]},{"id":"CHEBI:16441","l":"linamarin","na":2,"nb":1,"a":[["EC%3A2.4.1.63","linamarin synthase"],["RHEA%3A20009","2-hydroxy-2-methylpropanenitrile + UDP-alpha-D-glucose = linamarin + UDP + H(+)"]],"b":[["amino_acids_and_peptides/linamarin.yaml","linamarin"]]},{"id":"CHEBI:17630","l":"kanamycin A","na":2,"nb":1,"a":[["MCSA%3A647","kanamycin nucleotidyltransferase"],["proteintraitsmech%3ABIOLIP_KAN","KAN-binding site"]],"b":[["carbohydrates/kanamycin-a.yaml","kanamycin A"]]},{"id":"CHEBI:17695","l":"casbene","na":2,"nb":1,"a":[["EC%3A4.2.3.8","casbene synthase"],["RHEA%3A14901","(2E,6E,10E)-geranylgeranyl diphosphate = casbene + 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(-)-solanapyrone A"]],"b":[["polyketides/solanapyrone-a.yaml","solanapyrone A"]]},{"id":"CHEBI:42452","l":"formycin A","na":2,"nb":1,"a":[["TCDB%3A2.A.57","The Equilibrative Nucleoside Transporter (ENT) Family"],["proteintraitsmech%3ABIOLIP_FMC","FMC-binding site"]],"b":[["alkaloids/formycin-a.yaml","formycin A"]]},{"id":"CHEBI:48209","l":"aflatoxin B2","na":2,"nb":1,"a":[["EC%3A1.14.14.117","aflatoxin B synthase"],["RHEA%3A35763","8-O-methyldihydrosterigmatocystin + 2 reduced [NADPH--hemoprotein reductase] + 2 O2 = aflatoxin B2 + methanol + 2 oxidized [NADPH--hemoprotein reductase] + CO2 + H2O + 2 H(+)"]],"b":[["polyketides/aflatoxin-b2.yaml","aflatoxin B2"]]},{"id":"CHEBI:52317","l":"thalianol","na":2,"nb":1,"a":[["EC%3A5.4.99.31","thalianol synthase"],["RHEA%3A26160","(S)-2,3-epoxysqualene = thalianol"]],"b":[["terpenoids/thalianol.yaml","thalianol"]]},{"id":"CHEBI:61345","l":"chrysobactin","na":2,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_61345","requires 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diphosphate"]],"b":[["terpenoids/muurolol.yaml","(+)-Τ-muurolol"]]},{"id":"CHEBI:64268","l":"","na":2,"nb":1,"a":[["EC%3A2.1.1.254","erythromycin 3'-O-methyltransferase"],["RHEA%3A32647","erythromycin C + S-adenosyl-L-methionine = erythromycin A + S-adenosyl-L-homocysteine + H(+)"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"CHEBI:6570","l":"lupeol","na":2,"nb":1,"a":[["EC%3A5.4.99.41","lupeol synthase"],["RHEA%3A31383","(S)-2,3-epoxysqualene = lupeol"]],"b":[["terpenoids/lupeol.yaml","lupeol"]]},{"id":"CHEBI:73237","l":"(−)-noscapine","na":2,"nb":1,"a":[["EC%3A1.1.1.415","noscapine synthase"],["RHEA%3A57404","narcotine hemiacetal + NAD(+) = noscapine + NADH + H(+)"]],"b":[["alkaloids/noscapine.yaml","(−)-noscapine"]]},{"id":"CHEBI:77772","l":"ilicicolin H","na":2,"nb":1,"a":[["RHEA%3A64568","3-[(2E,4E,8S,10E,12Z)-4,8-dimethyltetradeca-2,4,10,12-tetraenoyl]-4-hydroxy-5-(4-hydroxyphenyl)-1,2-dihydropyridin-2-one = ilicicolin H"],["RHEA%3A64564","8-epi-ilicicolin 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A"]]},{"id":"UniProt:O96028","l":"","na":27,"nb":16,"a":[["ComplexPortal%3ACPX-16414","-"],["CDD%3Acd20162","PWWP_NSD2_rpt1"],["CDD%3Acd21991","HMG-box_NSD2"],["CDD%3Acd15648","PHD1_NSD1_2"],["CDD%3Acd15651","PHD2_NSD2"],["CDD%3Acd15654","PHD3_NSD2"]],"b":[["alkaloids/cytochalasin-e.yaml","cytochalasin E"],["alkaloids/fumiquinazoline-d.yaml","fumiquinazoline D"],["amino_acids_and_peptides/epoxomicin.yaml","epoxomicin"],["amino_acids_and_peptides/tubulysin-a.yaml","tubulysin A"],["carbohydrates/puromycin.yaml","puromycin"],["fatty_acids/desferrioxamine-b.yaml","desferrioxamine B"]]},{"id":"NCBITaxon:1423","l":"Bacillus subtilis","na":18,"nb":16,"a":[["Pfam%3APF13535","ATP-grasp domain"],["Pfam%3APF17728","BsuBI/PstI restriction endonuclease HTH domain"],["Pfam%3APF06616","BsuBI/PstI restriction endonuclease domain"],["Pfam%3APF14562","Restriction endonuclease BglI"],["Pfam%3APF09195","Restriction endonuclease BglII/BglIII"],["Pfam%3APF09208","Restriction endonuclease MspI"]],"b":[["amino_acids_and_peptides/bacillomycin-d.yaml","bacillomycin D"],["amino_acids_and_peptides/bacilysin-2.yaml","bacilysin"],["amino_acids_and_peptides/bacilysin.yaml","bacilysin"],["amino_acids_and_peptides/ericin-s.yaml","ericin S"],["amino_acids_and_peptides/iturin.yaml","iturin"],["amino_acids_and_peptides/mersacidin.yaml","mersacidin"]]},{"id":"NCBITaxon:330879","l":"Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)","na":34,"nb":14,"a":[["Pfam%3APF22624","4'-phosphopantetheinyl transferase, N-terminal"],["Pfam%3APF13523","Acetyltransferase (GNAT) domain"],["Pfam%3APF28338","AclK C-terminal domain"],["Pfam%3APF23297","Highly reducing polyketide synthase sdgA, C-terminal ACP domain"],["Pfam%3APF11001","YDR124W-like, helical bundle domain"],["Pfam%3APF25312","Allergen Asp f 4-like domain"]],"b":[["alkaloids/fumigaclavine-c.yaml","fumigaclavine C"],["alkaloids/fumiquinazoline-a.yaml","fumiquinazoline A"],["alkaloids/fumiquinazoline-c.yaml","fumiquinazoline C"],["alkaloids/fumiquinazoline-d.yaml","fumiquinazoline D"],["alkaloids/hexadehydroastechrome.yaml","hexadehydroastechrome"],["polyketides/endocrocin.yaml","endocrocin"]]},{"id":"NCBITaxon:9606","l":"Homo sapiens","na":50101,"nb":13,"a":[["EC%3A1.1.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.1.98.-","With other, known, acceptors"],["EC%3A1.1.-.-","Acting on the CH-OH group of donors"],["EC%3A1.11.1.-","Peroxidases"],["EC%3A1.11.2.-","With H2O2 as acceptor, one oxygen atom of which is incorporated into the product"],["EC%3A1.13.11.-","With incorporation of two atoms of oxygen"]],"b":[["alkaloids/biotin.yaml","biotin"],["alkaloids/congocidine.yaml","congocidine"],["alkaloids/huperzine-a.yaml","huperzine A"],["alkaloids/staurosporine-2.yaml","staurosporine"],["amino_acids_and_peptides/citrulline.yaml","citrulline"],["amino_acids_and_peptides/lugdunin.yaml","lugdunin"]]},{"id":"NCBITaxon:56","l":"Sorangium cellulosum","na":13,"nb":25,"a":[["TED%3AAF-A0A150SQB4-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A150SQB4-F1-model_v4_TED01"],["TED%3AAF-A0A2L0EP96-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2L0EP96-F1-model_v4_TED01"],["TED%3AAF-A0A2L0F1G5-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2L0F1G5-F1-model_v4_TED01"],["TED%3AAF-A0A2L0F230-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2L0F230-F1-model_v4_TED01"],["TED%3AAF-A0A4P2R1W3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4P2R1W3-F1-model_v4_TED01"],["TED%3AAF-A0A150P579-F1-model_v4_TED02","TED novel fold AF-A0A150P579-F1-model_v4_TED02"]],"b":[["amino_acids_and_peptides/microsclerodermin-m.yaml","microsclerodermin M"],["polyketides/ambruticin.yaml","ambruticin"],["polyketides/chivosazol.yaml","chivosazol"],["polyketides/chlorotonil-a.yaml","chlorotonil A"],["polyketides/disorazol-a.yaml","disorazol A"],["polyketides/etnangien.yaml","etnangien"]]},{"id":"NCBITaxon:287","l":"Pseudomonas aeruginosa","na":20,"nb":12,"a":[["Pfam%3APF02522","Aminoglycoside 3-N-acetyltransferase"],["Pfam%3APF18173","Bacterial HORMA domain 2"],["Pfam%3APF13354","Beta-lactamase enzyme family"],["Pfam%3APF26107","BrxR transcriptional regulator, C-terminal dimerization domain"],["Pfam%3APF27322","Cap8 HORMA domain"],["Pfam%3APF01526","Tn3 transposase DDE domain"]],"b":[["alkaloids/2-heptyl-3-hydroxy-4-quinolone.yaml","2-heptyl-3-hydroxy-4-quinolone"],["alkaloids/2-heptylquinolin-4-1h-one.yaml","2-heptylquinolin-4(1H)-one"],["alkaloids/4-hydroxy-2-quinolone.yaml","4-hydroxy-2-quinolone"],["alkaloids/azetidomonamide-a.yaml","azetidomonamide A"],["alkaloids/azetidomonamide-b.yaml","azetidomonamide B"],["alkaloids/pyochelin-i.yaml","pyochelin I"]]},{"id":"NCBITaxon:341663","l":"","na":11,"nb":17,"a":[["Pfam%3APF27751","ATEG_07667 C-terminal domain"],["Pfam%3APF28386","BfoA family C-terminal domain"],["Pfam%3APF03879","Cgr1 family"],["Pfam%3APF22621","CurL-like, PKS C-terminal"],["Pfam%3APF18558","Methyltransferase, Helix-turn-helix domain"],["Pfam%3APF06355","Aegerolysin"]],"b":[["alkaloids/asterriquinone-ct5.yaml","asterriquinone CT5"],["alkaloids/dihydroisoflavipucine.yaml","dihydroisoflavipucine"],["alkaloids/isoflavipucine.yaml","isoflavipucine"],["polyketides/citreoviridin.yaml","citreoviridin"],["polyketides/geodin.yaml","geodin"],["polyketides/terreic-acid.yaml","terreic acid"]]},{"id":"NCBITaxon:5061","l":"Aspergillus niger","na":12,"nb":11,"a":[["Pfam%3APF17433","Glycosyl hydrolase family 49 N-terminal Ig-like domain"],["PROSITE%3APS00820","Glucoamylase active site region signature"],["PROSITE%3APS00920","Nitrilases / cyanide hydratase signature 1"],["PROSITE%3APS00502","Polygalacturonase active site"],["Pfam%3APF18841","Beta solenoid repeat from Dextranase"],["Pfam%3APF03718","Glycosyl hydrolase family 49"]],"b":[["amino_acids_and_peptides/ferrichrome.yaml","ferrichrome"],["polyketides/1-2-3-5-10-tetrahydroxy-7-methoxy-4-oxo-1-2-3-4-tetrahydroanthracen-2-yl-pentane.yaml","1-(2,3,5,10-tetrahydroxy-7-methoxy-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl)pentane-2,4-dione"],["polyketides/azanigerone-a.yaml","azanigerone A"],["polyketides/campyrone-b.yaml","campyrone B"],["polyketides/desmethyl-tan-1612.yaml","desmethyl TAN-1612"],["polyketides/fumonisin-b2.yaml","fumonisin B2"]]},{"id":"NCBITaxon:3702","l":"Arabidopsis thaliana","na":18776,"nb":10,"a":[["EC%3A1.1.99.-","With other acceptors"],["EC%3A1.1.-.-","Acting on the CH-OH group of donors"],["EC%3A1.11.1.-","Peroxidases"],["EC%3A1.14.11.-","With 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors"],["EC%3A1.14.13.-","With NADH or NADPH as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.14.-","With reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen"]],"b":[["amino_acids_and_peptides/citrulline.yaml","citrulline"],["fatty_acids/itaconic-acid.yaml","itaconic acid"],["terpenoids/ent-quiannulatene.yaml","(-)-ent-quiannulatene"],["terpenoids/euphol.yaml","euphol"],["terpenoids/marneral.yaml","marneral"],["terpenoids/thaliandiol.yaml","thaliandiol"]]},{"id":"NCBITaxon:208964","l":"Pseudomonas aeruginosa PAO1","na":174,"nb":10,"a":[["Pfam%3APF25323","PilS-like transmembrane domain"],["Pfam%3APF06750","Bacterial Peptidase A24 N-terminal domain"],["Pfam%3APF12679","ABC-2 family transporter protein"],["Pfam%3APF28403","Aconitase X second domain"],["Pfam%3APF28406","Aconitase X third domain"],["Pfam%3APF04412","Aconitase X first domain"]],"b":[["alkaloids/2-heptyl-3-hydroxy-4-quinolone.yaml","2-heptyl-3-hydroxy-4-quinolone"],["alkaloids/2-heptylquinolin-4-1h-one.yaml","2-heptylquinolin-4(1H)-one"],["alkaloids/4-hydroxy-2-quinolone.yaml","4-hydroxy-2-quinolone"],["alkaloids/azetidomonamide-a.yaml","azetidomonamide A"],["alkaloids/azetidomonamide-b.yaml","azetidomonamide B"],["alkaloids/pyochelin-i.yaml","pyochelin I"]]},{"id":"NCBITaxon:1911","l":"Streptomyces griseus","na":10,"nb":32,"a":[["Pfam%3APF13207","AAA domain"],["Pfam%3APF27054","Beta-methylindole-3-pyruvate reductase C-terminal domain"],["Pfam%3APF26558","3-dehydroquinate synthase II C-terminal domain"],["Pfam%3APF01959","3-dehydroquinate synthase II N-terminal domain"],["Pfam%3APF13459","4Fe-4S single cluster domain"],["Pfam%3APF04655","Aminoglycoside/hydroxyurea antibiotic resistance kinase"]],"b":[["alkaloids/cycloheximide.yaml","cycloheximide"],["alkaloids/grixazone-a.yaml","grixazone A"],["alkaloids/iminimycin-a.yaml","iminimycin A"],["alkaloids/iminimycin-b.yaml","iminimycin B"],["alkaloids/indolmycin.yaml","indolmycin"],["alkaloids/melanin.yaml","melanin"]]},{"id":"NCBITaxon:510516","l":"Aspergillus oryzae (strain ATCC 42149 / RIB 40)","na":29,"nb":10,"a":[["Pfam%3APF09260","Alpha-amylase, domain C"],["Pfam%3APF28338","AclK C-terminal domain"],["Pfam%3APF09206","Alpha-L-arabinofuranosidase B, catalytic"],["Pfam%3APF28380","Sesquiterpene cyclase astC-like C-terminal domain"],["Pfam%3APF13364","Beta-galactosidase second all-beta domain"],["Pfam%3APF10435","Beta-galactosidase, domain 2"]],"b":[["fatty_acids/oryzine-a.yaml","oryzine A"],["polyketides/kojic-acid.yaml","kojic acid"],["polyketides/oryzine-b.yaml","oryzine B"],["polyketides/ywa1.yaml","YWA1"],["shikimates_and_phenylpropanoids/2-4-dihydroxy-3-methoxypropiophenone.yaml","2,4'-dihydroxy-3'-methoxypropiophenone"],["shikimates_and_phenylpropanoids/8-methyldiaporthin.yaml","8-methyldiaporthin"]]},{"id":"NCBITaxon:242507","l":"","na":14,"nb":10,"a":[["Pfam%3APF28293","Biotrophy-associated secreted protein 2"],["Pfam%3APF28414","Biotrophy-associated secreted protein 4"],["Pfam%3APF22997","Chitin synthase 4-like domain"],["Pfam%3APF27979","CON7 transcription factor helical domain"],["Pfam%3APF26980","Dicer-like protein 2, dsRNA binding domain"],["Pfam%3APF11327","Egh16-like virulence factor"]],"b":[["polyketides/1-alpha-l-2-o-methyl-6-deoxymannopyranosyloxy-3-6-8-trimethoxynaphthalene.yaml","1-(alpha-l-(2-O-methyl)-6-deoxymannopyranosyloxy)-3,6,8-trimethoxynaphthalene"],["polyketides/10-11-dihydroxymagnaporthepyrone.yaml","10,11-dihydroxymagnaporthepyrone"],["polyketides/12-13-dihydroxymagnaporthepyrone.yaml","12,13-dihydroxymagnaporthepyrone"],["polyketides/epipyriculol.yaml","epipyriculol"],["polyketides/naphthalene-1-3-6-8-tetrol.yaml","naphthalene-1,3,6,8-tetrol"],["polyketides/nectriapyrone-c.yaml","nectriapyrone C"]]},{"id":"NCBITaxon:5076","l":"Penicillium chrysogenum","na":93,"nb":9,"a":[["Pfam%3APF03417","Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase"],["IEDB%3A30","epitope AAAEKAITVGAS"],["IEDB%3A168112","epitope AFHKELGAIYSEIKD"],["IEDB%3A168122","epitope AGIHFAVAAGNDNAD"],["IEDB%3A1615","epitope AGMDWAVKD"],["IEDB%3A1777","epitope AHIKKSKKGDKKFKGSVANMSLGGGSSRTLD"]],"b":[["alkaloids/chrysogine.yaml","chrysogine"],["amino_acids_and_peptides/benzylpenicillin-sodium.yaml","benzylpenicillin sodium"],["amino_acids_and_peptides/isopenicillin-n.yaml","isopenicillin N"],["amino_acids_and_peptides/n-5s-5-ammonio-5-carboxylatopentanoyl-l-cysteinyl-d-valinate.yaml","N-[(5S)-5-ammonio-5-carboxylatopentanoyl]-L-cysteinyl-D-valinate"],["polyketides/2-3-dihydrosorbicillin.yaml","2'3'-dihydrosorbicillin"],["polyketides/bisorbicillinol.yaml","bisorbicillinol"]]},{"id":"UniProt:P18054","l":"","na":25,"nb":9,"a":[["EC%3A1.13.11.31","arachidonate 12-lipoxygenase"],["EC%3A1.13.11.33","arachidonate 15-lipoxygenase"],["EC%3A1.13.11.-","With incorporation of two atoms of oxygen"],["RHEA%3A10428","(5Z,8Z,11Z,14Z)-eicosatetraenoate + O2 = (12S)-hydroperoxy-(5Z,8Z,10E,14Z)-eicosatetraenoate"],["RHEA%3A16869","(5Z,8Z,11Z,14Z)-eicosatetraenoate + O2 = (15S)-hydroperoxy-(5Z,8Z,11Z,13E)-eicosatetraenoate"],["GO%3A0004052","arachidonate 12(S)-lipoxygenase activity"]],"b":[["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["amino_acids_and_peptides/actinonin.yaml","actinonin"],["fatty_acids/desferrioxamine-b.yaml","desferrioxamine B"],["fatty_acids/triacsin-c.yaml","triacsin C"],["polyketides/terreic-acid.yaml","terreic acid"],["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"NCBITaxon:746128","l":"Aspergillus fumigatus","na":9,"nb":20,"a":[["IEDB%3A174450","epitope EALQYFALEAYAFDI"],["IEDB%3A174452","epitope EAYAFDIAAPGVGCA"],["IEDB%3A174517","epitope GNRPTMEAVGAYDVI"],["IEDB%3A174535","epitope GYDEVIALAKSNGTE"],["IEDB%3A174536","epitope HFADGYDEVIALAKS"],["IEDB%3A174757","epitope TMEAVGAYDVIVNGD"]],"b":[["alkaloids/fumigaclavine-c.yaml","fumigaclavine C"],["alkaloids/fumiquinazoline-a.yaml","fumiquinazoline A"],["alkaloids/fumiquinazoline-c.yaml","fumiquinazoline C"],["alkaloids/fumiquinazoline-d.yaml","fumiquinazoline D"],["alkaloids/hexadehydroastechrome.yaml","hexadehydroastechrome"],["carbohydrates/tobramycin.yaml","tobramycin"]]},{"id":"UniProt:Q96RU2","l":"","na":14,"nb":9,"a":[["ComplexPortal%3ACPX-15530","-"],["ComplexPortal%3ACPX-15595","-"],["ComplexPortal%3ACPX-15768","-"],["ComplexPortal%3ACPX-24431","-"],["InterPro%3AIPR054108","Ubiquitin carboxyl-terminal hydrolase 25/28, UIM"],["CDD%3Acd02665","Peptidase_C19I"]],"b":[["alkaloids/esmeraldin.yaml","esmeraldin"],["alkaloids/fervenulin.yaml","fervenulin"],["alkaloids/neocarazostatin-a.yaml","neocarazostatin A"],["alkaloids/nybomycin.yaml","nybomycin"],["amino_acids_and_peptides/tyrocidine-a.yaml","tyrocidine A"],["polyketides/asukamycin.yaml","asukamycin"]]},{"id":"UniProt:O95398","l":"","na":20,"nb":8,"a":[["ComplexPortal%3ACPX-10829","-"],["ComplexPortal%3ACPX-12123","-"],["ComplexPortal%3ACPX-12892","-"],["ComplexPortal%3ACPX-13579","-"],["ComplexPortal%3ACPX-13585","-"],["ComplexPortal%3ACPX-14152","-"]],"b":[["alkaloids/8-azaguanine.yaml","8-azaguanine"],["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["amino_acids_and_peptides/thiostrepton.yaml","thiostrepton"],["fatty_acids/all-cis-5-8-11-14-17-icosapentaenoic-acid.yaml","all-cis-5,8,11,14,17-icosapentaenoic acid"],["fatty_acids/trans-aconitic-acid.yaml","trans-aconitic acid"],["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"NCBITaxon:246197","l":"Myxococcus xanthus DK1622","na":8,"nb":12,"a":[["Pfam%3APF27281","DevT C-terminal domain"],["Pfam%3APF27372","DevT N-terminal domain"],["Pfam%3APF17762","ParB HTH domain"],["Pfam%3APF01930","Domain of unknown function DUF83"],["Pfam%3APF09559","Cas6 Crispr"],["Pfam%3APF01905","CRISPR-associated negative auto-regulator DevR/Csa2"]],"b":[["alkaloids/myxochelin-a.yaml","myxochelin A"],["alkaloids/myxochelin-b-2.yaml","myxochelin B"],["amino_acids_and_peptides/cittilin-a.yaml","cittilin A"],["amino_acids_and_peptides/cittilin-b.yaml","cittilin B"],["amino_acids_and_peptides/myxochromide-a.yaml","myxochromide A"],["amino_acids_and_peptides/myxoprincomide-c506.yaml","myxoprincomide-c506"]]},{"id":"NCBITaxon:229533","l":"Fusarium graminearum PH-1","na":8,"nb":11,"a":[["Pfam%3APF18388","Atg29 N-terminal domain"],["Pfam%3APF27599","CcsR C-terminal domain"],["Pfam%3APF07110","EthD domain"],["Pfam%3APF11700","Vacuole effluxer Atg22 like"],["Pfam%3APF28504","Gramillins biosynthetic cluster protein GRA5"],["PROSITE%3APS00777","Glycosyl hydrolases family 11 (GH11) active site signature 2"]],"b":[["alkaloids/chrysogine.yaml","chrysogine"],["amino_acids_and_peptides/fusaoctaxin-a.yaml","fusaoctaxin A"],["polyketides/aurofusarin.yaml","aurofusarin"],["polyketides/prolipyrone-b.yaml","prolipyrone B"],["shikimates_and_phenylpropanoids/o-orsellinic-acid.yaml","o-orsellinic acid"],["terpenoids/15-acetyldeoxynivalenol.yaml","15-acetyldeoxynivalenol"]]},{"id":"NCBITaxon:5599","l":"Alternaria alternata","na":63,"nb":7,"a":[["Pfam%3APF16541","Alternaria alternata allergen 1"],["IEDB%3A168075","epitope AALDNYIQTKTVSIR"],["IEDB%3A168092","epitope ADKVVLVAYFAADDK"],["IEDB%3A168093","epitope ADLAITYNSRAEGAE"],["IEDB%3A168100","epitope ADVKAVLESVGIEAD"],["IEDB%3A168144","epitope AIVYYSMYGHIKKMA"]],"b":[["alkaloids/ak-toxin-i.yaml","AK-toxin I"],["alkaloids/dimethylcoprogen.yaml","dimethylcoprogen"],["amino_acids_and_peptides/am-toxin.yaml","AM-toxin"],["polyketides/act-toxin-ii.yaml","ACT-Toxin II"],["polyketides/unii-yc2q1o94pt.yaml","UNII-YC2Q1O94PT"],["unclassified/af-toxin.yaml","AF-toxin"]]},{"id":"NCBITaxon:5077","l":"Penicillium citrinum","na":28,"nb":7,"a":[["IEDB%3A164560","epitope AAANVVKSGIFLSVAAGNE"],["IEDB%3A164565","epitope AAPHVAGVAAYLM"],["IEDB%3A164579","epitope AKSRGANGKYVMNMSLGGE"],["IEDB%3A164582","epitope ALEGVSAGNACARIVQLA"],["IEDB%3A164583","epitope ALEGVSAGNACARIVQLATSSISRAPSGTTSK"],["IEDB%3A164593","epitope ANVVQSNVPSWGLARISSK"]],"b":[["alkaloids/4-hydroxy-2-quinolone.yaml","4-hydroxy-2-quinolone"],["polyketides/citrinin.yaml","(+)-citrinin"],["polyketides/mevinic-acid.yaml","mevinic acid"],["unclassified/orcinol.yaml","orcinol"],["unclassified/penigainamide-a.yaml","penigainamide A"],["unclassified/penigainamide-b.yaml","penigainamide B"]]},{"id":"NCBITaxon:1916","l":"Streptomyces lividans","na":7,"nb":18,"a":[["Pfam%3APF12324","Helix-turn-helix domain of alkylmercury lyase"],["Pfam%3APF27079","SpdB plasmid transfer protein, C-terminal HTH domain"],["Pfam%3APF27072","KilB plasmid transfer protein"],["Pfam%3APF08386","TAP-like protein"],["PROSITE%3APS00999","Streptomyces subtilisin-type inhibitors signature"],["Pfam%3APF03664","Glycosyl hydrolase family 62"]],"b":[["alkaloids/rebeccamycin.yaml","rebeccamycin"],["alkaloids/staurosporine.yaml","staurosporine"],["amino_acids_and_peptides/actinomycin-d.yaml","actinomycin D"],["amino_acids_and_peptides/dehydroxynocardamine.yaml","dehydroxynocardamine"],["amino_acids_and_peptides/goadsporin.yaml","goadsporin"],["carbohydrates/2-deoxystreptamine.yaml","2-deoxystreptamine"]]},{"id":"NCBITaxon:223283","l":"Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)","na":14,"nb":7,"a":[["IDPO%3A0000030","entropic chain"],["IDPO%3A0000037","molecular recognition display site"],["Pfam%3APF16847","Avirulence AvrPtoB, BAK1-binding domain"],["Pfam%3APF09046","AvrPtoB E3 ubiquitin ligase"],["Pfam%3APF25965","ALG44 beta-barrel domain"],["Pfam%3APF25964","ALG44, barrel-sandwich hybrid domain"]],"b":[["alkaloids/yersiniabactin.yaml","yersiniabactin"],["amino_acids_and_peptides/syringafactin-a.yaml","syringafactin A"],["amino_acids_and_peptides/syringafactin-b.yaml","syringafactin B"],["amino_acids_and_peptides/syringafactin-c.yaml","syringafactin C"],["amino_acids_and_peptides/syringafactin-d.yaml","syringafactin D"],["amino_acids_and_peptides/syringafactin-e.yaml","syringafactin E"]]},{"id":"NCBITaxon:1901","l":"Streptomyces clavuligerus","na":7,"nb":13,"a":[["Pfam%3APF16861","Carbamoyltransferase C-terminus"],["Pfam%3APF02543","Carbamoyltransferase N-terminus"],["Pfam%3APF01960","ArgJ family"],["Pfam%3APF07467","Beta-lactamase inhibitor (BLIP)"],["MCSA%3A303","(carboxyethyl)arginine beta-lactam-synthase"],["MCSA%3A137","deacetoxycephalosporin-C synthase"]],"b":[["alkaloids/holomycin.yaml","holomycin"],["alkaloids/staurosporine.yaml","staurosporine"],["amino_acids_and_peptides/2-formyloxymethylclavam.yaml","2-formyloxymethylclavam"],["amino_acids_and_peptides/2-hydroxymethylclavam.yaml","2-hydroxymethylclavam"],["amino_acids_and_peptides/alanylclavam.yaml","alanylclavam"],["amino_acids_and_peptides/cephamycin-c.yaml","cephamycin C"]]},{"id":"NCBITaxon:5507","l":"Fusarium oxysporum","na":7,"nb":11,"a":[["Pfam%3APF02015","Glycosyl hydrolase family 45"],["PROSITE%3APS01140","Glycosyl hydrolases family 45 active site"],["MCSA%3A473","NADP nitrous oxide-forming nitric oxide reductase"],["MCSA%3A173","trypsin"],["TED%3AAF-A0A2H3TJY2-F1-model_v4_TED01","TED novel fold AF-A0A2H3TJY2-F1-model_v4_TED01"],["TED%3AAF-A0A420N954-F1-model_v4_TED01","TED novel fold AF-A0A420N954-F1-model_v4_TED01"]],"b":[["alkaloids/fusaric-acid.yaml","fusaric acid"],["polyketides/bikaverin.yaml","bikaverin"],["polyketides/fumonisin-b1.yaml","Fumonisin B1"],["polyketides/fumonisin-c1.yaml","Fumonisin C1"],["polyketides/fumonisin-c2.yaml","Fumonisin C2"],["polyketides/fumonisin-c3.yaml","Fumonisin C3"]]},{"id":"NCBITaxon:27334","l":"Penicillium expansum","na":7,"nb":10,"a":[["Pfam%3APF11786","Aft1 HRA domain"],["Pfam%3APF11787","Aft1 HRR domain"],["Pfam%3APF11785","Aft1 osmotic stress response (OSM) domain"],["Pfam%3APF14856","Pathogen effector; putative necrosis-inducing factor"],["PROSITE%3APS00624","GMC oxidoreductases signature 2"],["TED%3AAF-A0A0A2ILJ4-F1-model_v4_TED03","TED novel fold AF-A0A0A2ILJ4-F1-model_v4_TED03"]],"b":[["alkaloids/chaetoglobosin-a.yaml","chaetoglobosin A"],["alkaloids/chaetoglobosin-c.yaml","chaetoglobosin C"],["alkaloids/communesin-a.yaml","communesin A"],["alkaloids/communesin-b.yaml","communesin B"],["alkaloids/communesin-c.yaml","communesin C"],["alkaloids/communesin-d.yaml","communesin D"]]},{"id":"NCBITaxon:2024858","l":"","na":7,"nb":7,"a":[["TED%3AAF-A0A2D9T9L6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2D9T9L6-F1-model_v4_TED01"],["TED%3AAF-A0A2E0T9R7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2E0T9R7-F1-model_v4_TED01"],["TED%3AAF-A0A891ZV95-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A891ZV95-F1-model_v4_TED01"],["TED%3AAF-A0A2D9SYS7-F1-model_v4_TED02","TED novel fold AF-A0A2D9SYS7-F1-model_v4_TED02"],["TED%3AAF-A0A2D9TFN8-F1-model_v4_TED02","TED novel fold AF-A0A2D9TFN8-F1-model_v4_TED02"],["TED%3AAF-A0A2E0TMV1-F1-model_v4_TED03","TED novel fold AF-A0A2E0TMV1-F1-model_v4_TED03"]],"b":[["amino_acids_and_peptides/sandarazol-a.yaml","sandarazol A"],["amino_acids_and_peptides/sandarazol-c.yaml","sandarazol C"],["amino_acids_and_peptides/sandarazol-d.yaml","sandarazol D"],["amino_acids_and_peptides/sandarazol-f.yaml","sandarazol F"],["amino_acids_and_peptides/sandarazol-g.yaml","sandarazol G"],["unclassified/sandarazol-b.yaml","sandarazol B"]]},{"id":"NCBITaxon:63737","l":"Nostoc punctiforme PCC 73102","na":7,"nb":7,"a":[["Pfam%3APF11266","Long-chain fatty aldehyde decarbonylase"],["Pfam%3APF21808","Bacterial dynamin-like protein, helical domain"],["Pfam%3APF18460","Heterocyst differentiation regulator C-terminal Hood domain"],["Pfam%3APF13619","KTSC domain"],["IEDB%3A127372","epitope WFSSGLWPF"],["IEDB%3A110157","epitope YWPTEGYEF"]],"b":[["amino_acids_and_peptides/microviridin-n3.yaml","microviridin N3"],["amino_acids_and_peptides/microviridin-n4.yaml","microviridin N4"],["amino_acids_and_peptides/microviridin-n6.yaml","microviridin N6"],["amino_acids_and_peptides/microviridin-n7.yaml","microviridin N7"],["amino_acids_and_peptides/microviridin-n8.yaml","microviridin N8"],["amino_acids_and_peptides/microviridin-n9.yaml","microviridin N9"]]},{"id":"UniProt:Q14694","l":"","na":27,"nb":6,"a":[["ComplexPortal%3ACPX-11609","-"],["ComplexPortal%3ACPX-11855","-"],["ComplexPortal%3ACPX-12223","-"],["ComplexPortal%3ACPX-12431","-"],["ComplexPortal%3ACPX-12812","-"],["ComplexPortal%3ACPX-13824","-"]],"b":[["alkaloids/esmeraldin.yaml","esmeraldin"],["alkaloids/fervenulin.yaml","fervenulin"],["alkaloids/nybomycin.yaml","nybomycin"],["polyketides/asukamycin.yaml","asukamycin"],["polyketides/dehydrorabelomycin.yaml","dehydrorabelomycin"],["polyketides/flaviolin.yaml","flaviolin"]]},{"id":"NCBITaxon:4577","l":"Zea mays","na":22,"nb":6,"a":[["IDPO%3A0000002","disorder"],["Pfam%3APF14861","Plant antimicrobial peptide"],["Pfam%3APF02041","Auxin binding protein"],["Pfam%3APF25436","BSD2 cysteine rich domain"],["Pfam%3APF23493","Cysteinyl-tRNA ligase anticodon binding domain"],["Pfam%3APF03330","Lytic transglycolase"]],"b":[["alkaloids/dimboa.yaml","DIMBOA"],["polyketides/emodin.yaml","emodin"],["terpenoids/zealexin-a1.yaml","zealexin A1"],["terpenoids/zealexin-b3.yaml","zealexin B3"],["terpenoids/zealexin-c2.yaml","zealexin C2"],["unclassified/aflatoxin.yaml","aflatoxin"]]},{"id":"UniProt:Q99700","l":"","na":20,"nb":6,"a":[["ComplexPortal%3ACPX-12180","-"],["ComplexPortal%3ACPX-12321","-"],["ComplexPortal%3ACPX-12947","-"],["ComplexPortal%3ACPX-13401","-"],["ComplexPortal%3ACPX-15183","-"],["ComplexPortal%3ACPX-17860","-"]],"b":[["alkaloids/8-azaguanine.yaml","8-azaguanine"],["alkaloids/cycloheximide.yaml","cycloheximide"],["amino_acids_and_peptides/desferrioxamine-e.yaml","desferrioxamine E"],["polyketides/2-4-diacetylphloroglucinol.yaml","2,4-diacetylphloroglucinol"],["unclassified/antimycin-a.yaml","antimycin A"],["unclassified/echinomycin.yaml","echinomycin"]]},{"id":"UniProt:P40818","l":"","na":16,"nb":6,"a":[["ComplexPortal%3ACPX-13765","-"],["ComplexPortal%3ACPX-16972","-"],["ComplexPortal%3ACPX-18301","-"],["ComplexPortal%3ACPX-19098","-"],["ComplexPortal%3ACPX-24015","-"],["GO%3A0004843","cysteine-type deubiquitinase activity"]],"b":[["alkaloids/esmeraldin.yaml","esmeraldin"],["alkaloids/fervenulin.yaml","fervenulin"],["alkaloids/neocarazostatin-a.yaml","neocarazostatin A"],["alkaloids/nybomycin.yaml","nybomycin"],["polyketides/dehydrorabelomycin.yaml","dehydrorabelomycin"],["polyketides/flaviolin.yaml","flaviolin"]]},{"id":"NCBITaxon:321614","l":"","na":6,"nb":12,"a":[["Pfam%3APF11786","Aft1 HRA domain"],["Pfam%3APF11787","Aft1 HRR domain"],["Pfam%3APF26980","Dicer-like protein 2, dsRNA binding domain"],["Pfam%3APF18973","Putative Chitin binding like"],["Pfam%3APF25326","SRB8 ARM-like domain"],["TED%3AAF-A0A7U2I0S3-F1-model_v4_TED02","TED novel fold AF-A0A7U2I0S3-F1-model_v4_TED02"]],"b":[["alkaloids/phomacin-d.yaml","phomacin D"],["alkaloids/phomacin-e.yaml","phomacin E"],["polyketides/betaenone-b.yaml","betaenone B"],["polyketides/betaenone-c.yaml","betaenone C"],["polyketides/compound-3-2.yaml","compound 3"],["polyketides/compound-5-2.yaml","compound 5"]]},{"id":"UniProt:Q70CQ3","l":"","na":11,"nb":6,"a":[["ComplexPortal%3ACPX-14824","-"],["ComplexPortal%3ACPX-15800","-"],["ComplexPortal%3ACPX-20518","-"],["ComplexPortal%3ACPX-22415","-"],["ComplexPortal%3ACPX-22784","-"],["GO%3A0035871","protein K11-linked deubiquitination"]],"b":[["alkaloids/esmeraldin.yaml","esmeraldin"],["alkaloids/fervenulin.yaml","fervenulin"],["alkaloids/holomycin.yaml","holomycin"],["alkaloids/neocarazostatin-a.yaml","neocarazostatin A"],["polyketides/flaviolin.yaml","flaviolin"],["polyketides/nigericin.yaml","nigericin"]]},{"id":"UniProt:P09936","l":"","na":10,"nb":6,"a":[["GO%3A0031694","alpha-2A adrenergic receptor binding"],["GO%3A0008242","omega peptidase activity"],["InterPro%3AIPR057254","Ubiquitin carboxyl-terminal hydrolase family 1, cysteine active-site"],["CDD%3Acd09616","Peptidase_C12_UCH_L1_L3"],["InterPro%3AIPR001578","Peptidase C12, ubiquitin carboxyl-terminal hydrolase"],["Pfam%3APF01088","Ubiquitin carboxyl-terminal hydrolase, family 1"]],"b":[["alkaloids/esmeraldin.yaml","esmeraldin"],["alkaloids/fervenulin.yaml","fervenulin"],["polyketides/asukamycin.yaml","asukamycin"],["polyketides/chelocardin.yaml","chelocardin"],["polyketides/dehydrorabelomycin.yaml","dehydrorabelomycin"],["polyketides/flaviolin.yaml","flaviolin"]]},{"id":"NCBITaxon:10090","l":"Mus musculus","na":46010,"nb":5,"a":[["EC%3A1.1.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.1.98.-","With other, known, acceptors"],["EC%3A1.1.-.-","Acting on the CH-OH group of donors"],["EC%3A1.11.1.-","Peroxidases"],["EC%3A1.11.2.-","With H2O2 as acceptor, one oxygen atom of which is incorporated into the product"],["EC%3A1.13.11.-","With incorporation of two atoms of oxygen"]],"b":[["alkaloids/biotin.yaml","biotin"],["alkaloids/staurosporine-2.yaml","staurosporine"],["amino_acids_and_peptides/citrulline.yaml","citrulline"],["fatty_acids/all-cis-5-8-11-14-17-icosapentaenoic-acid.yaml","all-cis-5,8,11,14,17-icosapentaenoic acid"],["terpenoids/carotene.yaml","β-carotene"]]},{"id":"NCBITaxon:1280","l":"Staphylococcus aureus","na":51,"nb":5,"a":[["IDPO%3A0000030","entropic chain"],["Pfam%3APF03373","Octapeptide repeat"],["Pfam%3APF13166","AAA domain"],["Pfam%3APF02216","B domain"],["Pfam%3APF27533","CapK C-terminal domain"],["Pfam%3APF21574","CRISPR-associated endonuclease Cas9, C-terminal domain"]],"b":[["amino_acids_and_peptides/staphyloferrin-b.yaml","staphyloferrin B"],["amino_acids_and_peptides/staphylopine.yaml","staphylopine"],["unclassified/leuvalin.yaml","leuvalin"],["unclassified/phevalin.yaml","phevalin"],["unclassified/tyrvalin.yaml","tyrvalin"]]},{"id":"NCBITaxon:303","l":"Pseudomonas putida","na":32,"nb":5,"a":[["Pfam%3APF14535","AMP-binding enzyme C-terminal domain"],["Pfam%3APF13442","Cytochrome C oxidase, cbb3-type, subunit III"],["Pfam%3APF22247","Catechol 2,3-dioxygenase-like N-terminal domain"],["Pfam%3APF25371","Domain of unknown function (DUF7884)"],["Pfam%3APF19301","LigXa C-terminal domain like"],["Pfam%3APF12729","Four helix bundle sensory module for signal transduction"]],"b":[["alkaloids/promysalin.yaml","promysalin"],["polyketides/pseudopyronine-a.yaml","pseudopyronine A"],["polyketides/pseudopyronine-b.yaml","pseudopyronine B"],["unclassified/putisolvin-iii.yaml","putisolvin III"],["unclassified/putisolvin-v.yaml","putisolvin V"]]},{"id":"NCBITaxon:34","l":"Myxococcus xanthus","na":5,"nb":31,"a":[["TED%3AAF-A0A4Y6CF56-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4Y6CF56-F1-model_v4_TED01"],["TED%3AAF-A0A4Y6CNZ1-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A4Y6CNZ1-F1-model_v4_TED02"],["TED%3AAF-A0A7Y4IIX4-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A7Y4IIX4-F1-model_v4_TED01"],["TED%3AAF-A0A4Y6B7F9-F1-model_v4_TED01","TED novel fold AF-A0A4Y6B7F9-F1-model_v4_TED01"],["TED%3AAF-A0A7Y4IR70-F1-model_v4_TED01","TED novel fold AF-A0A7Y4IR70-F1-model_v4_TED01"]],"b":[["alkaloids/myxochelin-b-2.yaml","myxochelin B"],["alkaloids/myxofacycline-e.yaml","myxofacycline E"],["alkaloids/myxofacycline-f.yaml","myxofacycline F"],["alkaloids/myxofacycline-g.yaml","myxofacycline G"],["amino_acids_and_peptides/cittilin-a.yaml","cittilin A"],["amino_acids_and_peptides/cittilin-b.yaml","cittilin B"]]},{"id":"NCBITaxon:5059","l":"Aspergillus flavus","na":5,"nb":30,"a":[["Pfam%3APF11720","Peptidase inhibitor I78 family"],["Pfam%3APF12296","Hydrophobic surface binding protein A"],["MCSA%3A118","urate oxidase"],["TED%3AAF-A0A3M7JGA1-F1-model_v4_TED02","TED novel fold AF-A0A3M7JGA1-F1-model_v4_TED02"],["TED%3AAF-A0A7G5JNS3-F1-model_v4_TED03","TED novel fold AF-A0A7G5JNS3-F1-model_v4_TED03"]],"b":[["alkaloids/actinopolymorphol-c.yaml","actinopolymorphol C"],["alkaloids/imizoquin-c.yaml","imizoquin C"],["alkaloids/imizoquin-d.yaml","imizoquin D"],["alkaloids/leporin-b.yaml","leporin B"],["amino_acids_and_peptides/ditryptophenaline.yaml","(-)-ditryptophenaline"],["amino_acids_and_peptides/imizoquin-a.yaml","imizoquin A"]]},{"id":"NCBITaxon:354","l":"Azotobacter vinelandii","na":26,"nb":5,"a":[["Pfam%3APF13372","Alginate export"],["Pfam%3APF25965","ALG44 beta-barrel domain"],["Pfam%3APF25964","ALG44, barrel-sandwich hybrid domain"],["Pfam%3APF16844","Dinitrogenase iron-molybdenum cofactor, N-terminal"],["Pfam%3APF00142","4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family"],["Pfam%3APF27446","Uridylyltransferase GlnD fifth domain"]],"b":[["alkaloids/aminochelin.yaml","aminochelin"],["alkaloids/azotochelin.yaml","azotochelin"],["alkaloids/protochelin.yaml","protochelin"],["amino_acids_and_peptides/azotobactin-d.yaml","azotobactin D"],["amino_acids_and_peptides/vibrioferrin.yaml","vibrioferrin"]]},{"id":"UniProt:O14656","l":"","na":21,"nb":5,"a":[["ComplexPortal%3ACPX-21660","-"],["ComplexPortal%3ACPX-26140","-"],["ComplexPortal%3ACPX-26338","Cytoplasmic organelles"],["ComplexPortal%3ACPX-26301","Secretory organelles"],["GO%3A0008092","cytoskeletal protein binding"],["GO%3A0019894","kinesin binding"]],"b":[["alkaloids/chloramphenicol.yaml","chloramphenicol"],["alkaloids/cycloheximide.yaml","cycloheximide"],["alkaloids/tioguanine.yaml","tioguanine"],["amino_acids_and_peptides/cyclosporin-a.yaml","cyclosporin A"],["polyketides/daunorubicin.yaml","daunorubicin"]]},{"id":"NCBITaxon:3562","l":"Spinacia oleracea","na":17,"nb":5,"a":[["Pfam%3APF21329","Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain"],["Pfam%3APF02941","Ferredoxin thioredoxin reductase variable alpha chain"],["Pfam%3APF02943","Ferredoxin thioredoxin reductase catalytic beta chain"],["Pfam%3APF17257","Family of unknown function (DUF5323)"],["PROSITE%3APS00567","Phosphoribulokinase signature"],["PROSITE%3APS01026","Photosystem I psaG and psaK proteins signature"]],"b":[["terpenoids/yossoside-i.yaml","Yossoside I"],["terpenoids/yossoside-ii.yaml","Yossoside II"],["terpenoids/yossoside-iii.yaml","Yossoside III"],["terpenoids/yossoside-iv.yaml","Yossoside IV"],["terpenoids/yossoside-v.yaml","Yossoside V"]]},{"id":"NCBITaxon:615","l":"Serratia marcescens","na":16,"nb":5,"a":[["Pfam%3APF03174","Chitobiase/beta-hexosaminidase C-terminal domain"],["Pfam%3APF03173","Putative carbohydrate binding domain"],["Pfam%3APF02838","Glycosyl hydrolase family 20, domain 2"],["Pfam%3APF06438","Heme-binding protein A (HasA)"],["Pfam%3APF02974","Protease inhibitor Inh"],["IEDB%3A36655","epitope LIPDGDGEV"]],"b":[["alkaloids/prodigiosin-2.yaml","prodigiosin"],["alkaloids/prodigiosin.yaml","prodigiosin"],["alkaloids/serratiochelin-a.yaml","serratiochelin A"],["carbohydrates/2-amino-2-deoxyadenosine.yaml","2'-amino-2'-deoxyadenosine"],["polyketides/oocydin-a.yaml","oocydin A"]]},{"id":"NCBITaxon:5518","l":"Fusarium graminearum","na":5,"nb":14,"a":[["Pfam%3APF09118","Galactose oxidase-like, Early set domain"],["Pfam%3APF07250","Glyoxal oxidase N-terminus"],["MCSA%3A322","galactose oxidiase"],["TED%3AAF-A0A2H3FY84-F1-model_v4_TED03","TED novel fold AF-A0A2H3FY84-F1-model_v4_TED03"],["TED%3AAF-A0A2H3G191-F1-model_v4_TED01","TED novel fold AF-A0A2H3G191-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/fusaoctaxin-a.yaml","fusaoctaxin A"],["polyketides/aurofusarin.yaml","aurofusarin"],["polyketides/fusarielin-h.yaml","fusarielin H"],["polyketides/gibepyrone-a.yaml","gibepyrone A"],["polyketides/prolipyrone-b.yaml","prolipyrone B"],["polyketides/zearalenone.yaml","zearalenone"]]},{"id":"UniProt:P36969","l":"","na":12,"nb":5,"a":[["ComplexPortal%3ACPX-18066","-"],["GO%3A0047066","phospholipid-hydroperoxide glutathione peroxidase activity"],["GO%3A0008430","selenium binding"],["GO%3A0034599","cellular response to oxidative stress"],["InterPro%3AIPR029759","Glutathione peroxidase active site"],["InterPro%3AIPR029760","Glutathione peroxidase conserved site"]],"b":[["alkaloids/ergotamine.yaml","ergotamine"],["fatty_acids/all-cis-5-8-11-14-17-icosapentaenoic-acid.yaml","all-cis-5,8,11,14,17-icosapentaenoic acid"],["polyketides/pentamycin.yaml","pentamycin"],["shikimates_and_phenylpropanoids/ochratoxin-a.yaml","ochratoxin A"],["unclassified/antimycin-a.yaml","antimycin A"]]},{"id":"NCBITaxon:5053","l":"Aspergillus aculeatus","na":5,"nb":11,"a":[["Pfam%3APF14683","Polysaccharide lyase family 4, domain III"],["Pfam%3APF14686","Polysaccharide lyase family 4, domain II"],["Pfam%3APF01670","Glycosyl hydrolase family 12"],["MCSA%3A658","arabinogalactan endo-1,4-beta-galactosidase"],["MCSA%3A705","rhamnogalacturonan acetylesterase"]],"b":[["alkaloids/acurin-a.yaml","acurin A"],["polyketides/secalonic-acid-a.yaml","Secalonic acid A"],["terpenoids/aculene-a.yaml","aculene A"],["terpenoids/aculene-b.yaml","aculene B"],["terpenoids/aculene-c.yaml","aculene C"],["terpenoids/aculene-d.yaml","aculene D"]]},{"id":"NCBITaxon:953739","l":"Streptomyces venezuelae ATCC 10712","na":5,"nb":10,"a":[["Pfam%3APF11583","P-aminobenzoate N-oxygenase AurF"],["Pfam%3APF18456","Diiron non-heme beta-hydroxylase N-terminal domain"],["Pfam%3APF07931","Chloramphenicol phosphotransferase-like protein"],["Pfam%3APF02650","WhiA C-terminal HTH domain"],["Pfam%3APF14527","WhiA LAGLIDADG-like domain"]],"b":[["alkaloids/chloramphenicol.yaml","chloramphenicol"],["alkaloids/gaburedin-d.yaml","gaburedin D"],["alkaloids/watasemycin-a.yaml","watasemycin A"],["alkaloids/watasemycin-b.yaml","watasemycin B"],["amino_acids_and_peptides/gaburedin-a.yaml","gaburedin A"],["amino_acids_and_peptides/gaburedin-b.yaml","gaburedin B"]]},{"id":"NCBITaxon:1836","l":"Saccharopolyspora erythraea","na":5,"nb":8,"a":[["Pfam%3APF08990","Erythronolide synthase docking domain"],["Pfam%3APF09277","Erythronolide synthase, docking"],["Pfam%3APF12728","Helix-turn-helix domain"],["Pfam%3APF12307","Protein of unknown function (DUF3631)"],["MCSA%3A602","6-deoxyerythronolide-B synthase"]],"b":[["amino_acids_and_peptides/erythrochelin.yaml","erythrochelin"],["polyketides/3-3-diflaviolin.yaml","3,3'-diflaviolin"],["polyketides/erythromycin-a.yaml","erythromycin A"],["polyketides/erythromycin-b.yaml","erythromycin B"],["polyketides/flaviolin-rhamnoside.yaml","flaviolin rhamnoside"],["polyketides/flaviolin.yaml","flaviolin"]]},{"id":"NCBITaxon:5081","l":"","na":5,"nb":6,"a":[["Pfam%3APF13364","Beta-galactosidase second all-beta domain"],["Pfam%3APF10435","Beta-galactosidase, domain 2"],["Pfam%3APF13363","Beta-galactosidase, domain 3"],["Pfam%3APF01301","Glycosyl hydrolases family 35"],["PROSITE%3APS01182","Glycosyl hydrolases family 35 putative active site"]],"b":[["alkaloids/citridone-a.yaml","citridone A"],["alkaloids/citridone-b-2.yaml","citridone B'"],["alkaloids/citridone-b.yaml","citridone B"],["alkaloids/cj-15-696.yaml","CJ-15,696"],["alkaloids/cj-16-173.yaml","CJ-16,173"],["polyketides/gregatin-a.yaml","gregatin A"]]},{"id":"NCBITaxon:549","l":"Pantoea agglomerans","na":6,"nb":5,"a":[["Pfam%3APF02929","Beta galactosidase small chain"],["Pfam%3APF27279","Fumarate--diaminopropanoate ligase C-terminal domain"],["Pfam%3APF18024","Helix-turn-helix domain"],["Pfam%3APF16353","Beta-galactosidase, domain 4"],["PROSITE%3APS00594","Aromatic amino acids permeases signature"],["PROSITE%3APS00853","Beta-eliminating lyases pyridoxal-phosphate attachment site"]],"b":[["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["amino_acids_and_peptides/andrimid.yaml","andrimid"],["amino_acids_and_peptides/desferrioxamine-e.yaml","desferrioxamine E"],["amino_acids_and_peptides/pantocin-a.yaml","pantocin A"],["carbohydrates/2-amino-2-deoxyadenosine.yaml","2'-amino-2'-deoxyadenosine"]]},{"id":"NCBITaxon:43658","l":"Pseudoalteromonas rubra","na":5,"nb":5,"a":[["proteintraitsmech%3AELIFE109154_Orn_monoox","Metallophore-associated ornithine N5-monooxygenase family"],["TED%3AAF-A0A0F4QZE1-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A0F4QZE1-F1-model_v4_TED02"],["TED%3AAF-A0A0U3GWJ2-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A0U3GWJ2-F1-model_v4_TED01"],["TED%3AAF-A0A0F4QSG0-F1-model_v4_TED02","TED novel fold AF-A0A0F4QSG0-F1-model_v4_TED02"],["TED%3AAF-A0A0L0EPH9-F1-model_v4_TED03","TED novel fold AF-A0A0L0EPH9-F1-model_v4_TED03"]],"b":[["alkaloids/prodigiosin.yaml","prodigiosin"],["polyketides/nonyltyrazolone.yaml","nonyltyrazolone"],["polyketides/undecyltyrazolone.yaml","undecyltyrazolone"],["shikimates_and_phenylpropanoids/z-6-undecenyltyrazolone.yaml","(Z)-ω-6-undecenyltyrazolone"],["unclassified/heptyltyrazolone.yaml","heptyltyrazolone"]]},{"id":"NCBITaxon:6239","l":"Caenorhabditis elegans","na":9682,"nb":4,"a":[["EC%3A1.11.1.-","Peroxidases"],["EC%3A1.11.2.-","With H2O2 as acceptor, one oxygen atom of which is incorporated into the product"],["EC%3A1.14.14.-","With reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.17.-","With reduced ascorbate as one donor, and incorporation of one atom of oxygen"],["EC%3A1.14.19.-","With oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water"],["EC%3A1.14.99.-","Miscellaneous"]],"b":[["alkaloids/biotin.yaml","biotin"],["amino_acids_and_peptides/citrulline.yaml","citrulline"],["fatty_acids/itaconic-acid.yaml","itaconic acid"],["fatty_acids/trans-aconitic-acid.yaml","trans-aconitic acid"]]},{"id":"NCBITaxon:10116","l":"Rattus norvegicus","na":1096,"nb":4,"a":[["IDPO%3A0000011","disorder to order"],["IDPO%3A0000030","entropic chain"],["IDPO%3A0000031","flexible C-terminal tail"],["IDPO%3A0000033","flexible linker"],["IDPO%3A0000041","glycosylation display site"],["IDPO%3A0000003","molten globule"]],"b":[["alkaloids/huperzine-a.yaml","huperzine A"],["alkaloids/methylarcyriarubin.yaml","methylarcyriarubin"],["alkaloids/staurosporine-2.yaml","staurosporine"],["amino_acids_and_peptides/lugdunin.yaml","lugdunin"]]},{"id":"NCBITaxon:39947","l":"Oryza sativa subsp. japonica","na":164,"nb":4,"a":[["Pfam%3APF03157","High molecular weight glutenin subunit"],["Pfam%3APF26249","RdRP3/4/5, N-terminal four helical bundle domain"],["Pfam%3APF23242","TRIP13-like, AAA+ ATPase lid C-terminal domain"],["Pfam%3APF26791","AAPxQ domain"],["Pfam%3APF24922","Acyl-CoA-binding domain-containing protein 4-6, C-terminal"],["Pfam%3APF04864","Allinase"]],"b":[["terpenoids/10-oxodepressin.yaml","10-Oxodepressin"],["terpenoids/momilactone-b.yaml","momilactone B"],["terpenoids/oryzalides.yaml","oryzalides"],["terpenoids/phytocassane.yaml","phytocassane"]]},{"id":"UniProt:P04637","l":"","na":55,"nb":4,"a":[["ComplexPortal%3ACPX-12293","-"],["ComplexPortal%3ACPX-12528","-"],["ComplexPortal%3ACPX-13029","-"],["ComplexPortal%3ACPX-14009","-"],["ComplexPortal%3ACPX-16240","-"],["ComplexPortal%3ACPX-21406","-"]],"b":[["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["fatty_acids/trans-aconitic-acid.yaml","trans-aconitic acid"],["polyketides/herboxidiene.yaml","herboxidiene"],["terpenoids/zeaxanthin.yaml","zeaxanthin"]]},{"id":"NCBITaxon:573","l":"Klebsiella pneumoniae","na":31,"nb":4,"a":[["Pfam%3APF08787","Alginate lyase"],["Pfam%3APF13354","Beta-lactamase enzyme family"],["Pfam%3APF08218","Citrate lyase ligase C-terminal domain"],["Pfam%3APF13727","CoA-binding domain"],["Pfam%3APF12324","Helix-turn-helix domain of alkylmercury lyase"],["Pfam%3APF20714","DpiA-like helix-turn-helix domain"]],"b":[["alkaloids/tilivalline.yaml","tilivalline"],["amino_acids_and_peptides/colibactin.yaml","colibactin"],["amino_acids_and_peptides/klebsidin.yaml","klebsidin"],["carbohydrates/capsular-polysaccharide-2.yaml","capsular polysaccharide"]]},{"id":"NCBITaxon:1396","l":"Bacillus cereus","na":28,"nb":4,"a":[["Pfam%3APF08878","HamA"],["Pfam%3APF05791","Bacillus haemolytic enterotoxin (HBL)"],["Pfam%3APF10803","Spore germination GerPB"],["Pfam%3APF10737","Spore germination protein GerPC"],["Pfam%3APF10970","Spore germination protein GerPE"],["Pfam%3APF07486","Cell Wall Hydrolase"]],"b":[["alkaloids/zwittermicin-a.yaml","zwittermicin A"],["amino_acids_and_peptides/livipeptin.yaml","Livipeptin"],["carbohydrates/tunicamycin.yaml","tunicamycin"],["unclassified/cereulide.yaml","cereulide"]]},{"id":"NCBITaxon:378806","l":"Stigmatella aurantiaca DW4/3-1","na":4,"nb":17,"a":[["TED%3AAF-Q098I8-F1-model_v4_TED01","TED highly-symmetric fold AF-Q098I8-F1-model_v4_TED01"],["TED%3AAF-E3FRW3-F1-model_v4_TED01","TED novel fold AF-E3FRW3-F1-model_v4_TED01"],["TED%3AAF-E3G0M4-F1-model_v4_TED01","TED novel fold AF-E3G0M4-F1-model_v4_TED01"],["TED%3AAF-Q08VS7-F1-model_v4_TED01","TED novel fold AF-Q08VS7-F1-model_v4_TED01"]],"b":[["polyketides/aurafuron-a.yaml","aurafuron A"],["polyketides/dawenol.yaml","dawenol"],["unclassified/dkxanthene-504.yaml","dkxanthene 504"],["unclassified/dkxanthene-508.yaml","dkxanthene 508"],["unclassified/dkxanthene-518.yaml","dkxanthene 518"],["unclassified/dkxanthene-520.yaml","dkxanthene 520"]]},{"id":"NCBITaxon:1914","l":"Streptomyces lavendulae","na":4,"nb":12,"a":[["Pfam%3APF01678","Diaminopimelate epimerase"],["Pfam%3APF27100","D-cycloserine synthetase DcsG, N-terminal domain"],["Pfam%3APF20240","Domain of unknown function (DUF6597)"],["Pfam%3APF11731","Pathogenicity locus"]],"b":[["alkaloids/indigoidine.yaml","indigoidine"],["alkaloids/saframycin-a.yaml","saframycin A"],["alkaloids/saframycin-b.yaml","saframycin B"],["amino_acids_and_peptides/cycloserine.yaml","cycloserine"],["amino_acids_and_peptides/isocomplestatin.yaml","isocomplestatin"],["carbohydrates/showdomycin.yaml","showdomycin"]]},{"id":"NCBITaxon:317","l":"Pseudomonas syringae","na":4,"nb":10,"a":[["PROSITE%3APS00314","Bacterial ice-nucleation proteins octamer repeat"],["Pfam%3APF00818","Ice nucleation protein repeat (2 copies)"],["TED%3AAF-A0A085UKV7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A085UKV7-F1-model_v4_TED01"],["TED%3AAF-A0A4R6IU28-F1-model_v4_TED02","TED novel fold AF-A0A4R6IU28-F1-model_v4_TED02"]],"b":[["alkaloids/labradorin-1.yaml","labradorin 1"],["alkaloids/labradorin-2.yaml","labradorin 2"],["alkaloids/secimide.yaml","secimide"],["amino_acids_and_peptides/phaseolotoxin.yaml","phaseolotoxin"],["amino_acids_and_peptides/syringolin-a.yaml","syringolin A"],["amino_acids_and_peptides/tabtoxin.yaml","tabtoxin"]]},{"id":"NCBITaxon:1397","l":"Niallia circulans","na":9,"nb":4,"a":[["Pfam%3APF03423","Carbohydrate binding domain (family 25)"],["Pfam%3APF13199","Glycosyl hydrolase family 66"],["Pfam%3APF14399","Butirosin biosynthesis protein H, N-terminal"],["Pfam%3APF19634","Family of unknown function (DUF6137)"],["PROSITE%3APS60000","Chitosanases families 46 and 80 active sites signature"],["MCSA%3A817","chitinase (GH18, class II)"]],"b":[["carbohydrates/butirosin-a.yaml","butirosin A"],["carbohydrates/butirosin-b.yaml","butirosin B"],["carbohydrates/butirosin.yaml","butirosin"],["unclassified/pelgipeptin-b.yaml","Pelgipeptin B"]]},{"id":"NCBITaxon:500485","l":"Penicillium rubens Wisconsin 54-1255","na":4,"nb":9,"a":[["Pfam%3APF03417","Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase"],["Pfam%3APF03659","Glycosyl hydrolase family 71"],["PROSITE%3APS00185","Isopenicillin N synthase signature 1"],["PROSITE%3APS00186","Isopenicillin N synthase signature 2"]],"b":[["alkaloids/dehydrohistidyltryptophanyldiketopiperazine.yaml","dehydrohistidyltryptophanyldiketopiperazine"],["alkaloids/glandicoline-a.yaml","glandicoline A"],["alkaloids/glandicoline-b.yaml","glandicoline B"],["alkaloids/meleagrine.yaml","meleagrine"],["polyketides/sorbicillin.yaml","sorbicillin"],["terpenoids/conidiogenone.yaml","conidiogenone"]]},{"id":"NCBITaxon:227882","l":"","na":8,"nb":4,"a":[["Pfam%3APF17390","Bacterial alpha-L-rhamnosidase C-terminal domain"],["Pfam%3APF08531","Alpha-L-rhamnosidase N-terminal domain"],["Pfam%3APF05592","Bacterial alpha-L-rhamnosidase concanavalin-like domain"],["Pfam%3APF26366","Domain of unknown function (DUF8094)"],["Pfam%3APF25788","Rha78A-like, N-terminal immunoglobulin domain"],["Pfam%3APF06781","Cell division protein CrgA"]],"b":[["amino_acids_and_peptides/edha.yaml","EDHA"],["polyketides/filipin-iii.yaml","filipin III"],["terpenoids/avermitilol.yaml","avermitilol"],["terpenoids/pentalenolactone.yaml","pentalenolactone"]]},{"id":"NCBITaxon:326423","l":"Bacillus velezensis FZB42","na":4,"nb":8,"a":[["Pfam%3APF21607","[Acyl-carrier-protein] S-malonyltransferase, inserted helical domain"],["Pfam%3APF21996","Histidyl-tRNA synthetase HisZ, C-terminal domain"],["Pfam%3APF07293","Protein of unknown function (DUF1450)"],["Pfam%3APF12227","Protein of unknown function (DUF3603)"]],"b":[["amino_acids_and_peptides/bacillomycin-d.yaml","bacillomycin D"],["amino_acids_and_peptides/bacilysin.yaml","bacilysin"],["polyketides/bacillaene.yaml","bacillaene"],["polyketides/difficidin.yaml","difficidin"],["polyketides/macrolactin-h.yaml","macrolactin H"],["unclassified/corynebactin.yaml","corynebactin"]]},{"id":"NCBITaxon:32049","l":"Picosynechococcus sp. PCC 7002","na":6,"nb":4,"a":[["Pfam%3APF09367","CpeS-like protein"],["Pfam%3APF06206","CpeT/CpcT family (DUF1001)"],["Pfam%3APF12965","Domain of unknown function (DUF3854)"],["Pfam%3APF19928","Domain of unknown function (DUF6391)"],["Pfam%3APF09366","Protein of unknown function (DUF1997)"],["Pfam%3APF14870","Photosynthesis system II assembly factor YCF48"]],"b":[["alkaloids/synechobactin-a.yaml","synechobactin A"],["alkaloids/synechobactin-b.yaml","synechobactin B"],["alkaloids/synechobactin-c.yaml","synechobactin C"],["fatty_acids/nonadec-1-ene.yaml","nonadec-1-ene"]]},{"id":"NCBITaxon:1393","l":"Brevibacillus brevis","na":5,"nb":4,"a":[["Pfam%3APF03306","Alpha-acetolactate decarboxylase"],["Pfam%3APF05384","Sensor protein DegS"],["TED%3AAF-A0A2Z4MK38-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2Z4MK38-F1-model_v4_TED01"],["TED%3AAF-A0A2Z4MPQ6-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A2Z4MPQ6-F1-model_v4_TED02"],["TED%3AAF-A0A517IGN3-F1-model_v4_TED03","TED highly-symmetric fold AF-A0A517IGN3-F1-model_v4_TED03"]],"b":[["alkaloids/ulbactin-f.yaml","ulbactin F"],["alkaloids/ulbactin-g.yaml","ulbactin G"],["amino_acids_and_peptides/gramicidin.yaml","gramicidin"],["amino_acids_and_peptides/tyrocidine-a.yaml","tyrocidine A"]]},{"id":"NCBITaxon:31958","l":"Amycolatopsis orientalis","na":5,"nb":4,"a":[["Pfam%3APF16990","Carbohydrate binding module (family 35)"],["Pfam%3APF14696","Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal"],["Pfam%3APF03559","NDP-hexose 2,3-dehydratase"],["Pfam%3APF18368","Exo-beta-D-glucosaminidase Ig-fold domain"],["TED%3AAF-K4FDK5-F1-model_v4_TED01","TED highly-symmetric fold AF-K4FDK5-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/chloroeremomycin.yaml","chloroeremomycin"],["amino_acids_and_peptides/vancomycin.yaml","vancomycin"],["polyketides/eco-0501.yaml","ECO-0501"],["polyketides/quartromicin-a1.yaml","quartromicin A1"]]},{"id":"NCBITaxon:3885","l":"Phaseolus vulgaris","na":4,"nb":5,"a":[["Pfam%3APF14829","Glycerol-3-phosphate acyltransferase N-terminal"],["PROSITE%3APS00281","Bowman-Birk serine protease inhibitors family signature"],["PROSITE%3APS00308","Legume lectins alpha-chain signature"],["MCSA%3A43","purple acid phosphatase"]],"b":[["alkaloids/biotin.yaml","biotin"],["amino_acids_and_peptides/citrulline.yaml","citrulline"],["amino_acids_and_peptides/ectoine.yaml","ectoine"],["fatty_acids/itaconic-acid.yaml","itaconic acid"],["unclassified/orcinol.yaml","orcinol"]]},{"id":"NCBITaxon:43","l":"Cystobacter fuscus","na":4,"nb":5,"a":[["TED%3AAF-A0A250J1A4-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A250J1A4-F1-model_v4_TED01"],["TED%3AAF-A0A250J4G5-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A250J4G5-F1-model_v4_TED01"],["TED%3AAF-A0A250J8W0-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A250J8W0-F1-model_v4_TED01"],["TED%3AAF-A0A250J3K5-F1-model_v4_TED03","TED novel fold AF-A0A250J3K5-F1-model_v4_TED03"]],"b":[["amino_acids_and_peptides/cystomanamide-a.yaml","cystomanamide A"],["amino_acids_and_peptides/cystomanamide-b.yaml","cystomanamide B"],["amino_acids_and_peptides/cystomanamide-c.yaml","cystomanamide C"],["amino_acids_and_peptides/cystomanamide-d.yaml","cystomanamide D"],["unclassified/cystothiazole-a.yaml","cystothiazole A"]]},{"id":"NCBITaxon:571","l":"Klebsiella oxytoca","na":4,"nb":5,"a":[["Pfam%3APF27446","Uridylyltransferase GlnD fifth domain"],["PROSITE%3APS00896","LacY family proton/sugar symporters signature 1"],["PROSITE%3APS00897","LacY family proton/sugar symporters signature 2"],["MCSA%3A494","propanediol dehydratase"]],"b":[["alkaloids/9-deoxy-tilivalline.yaml","9-deoxy tilivalline"],["alkaloids/dehydro-tilivalline.yaml","dehydro tilivalline"],["alkaloids/dihydroxy-dehydro-tilivalline.yaml","dihydroxy-dehydro tilivalline"],["alkaloids/dihydroxy-tilivalline.yaml","dihydroxy tilivalline"],["alkaloids/tilivalline.yaml","tilivalline"]]},{"id":"NCBITaxon:48","l":"Archangium gephyra","na":4,"nb":4,"a":[["TED%3AAF-A0A0G2ZQX3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A0G2ZQX3-F1-model_v4_TED01"],["TED%3AAF-A0A0G3A8M9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A0G3A8M9-F1-model_v4_TED01"],["TED%3AAF-A0A2W5T6H4-F1-model_v4_TED03","TED highly-symmetric fold AF-A0A2W5T6H4-F1-model_v4_TED03"],["TED%3AAF-A0A0G2ZR59-F1-model_v4_TED01","TED novel fold AF-A0A0G2ZR59-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/tubulysin-f.yaml","tubulysin F"],["amino_acids_and_peptides/tubulysin-g.yaml","tubulysin G"],["amino_acids_and_peptides/tubulysin-i.yaml","tubulysin I"],["polyketides/aurafuron-a.yaml","aurafuron A"]]},{"id":"UniProt:P00784","l":"","na":4,"nb":4,"a":[["EC%3A3.4.22.2","papain"],["MCSA%3A174","papain"],["proteintraitsmech%3ABIOLIP_ALD","ALD-binding site"],["proteintraitsmech%3AMETALPDB_RU_DINUCLEAR","dinuclear ruthenium site"]],"b":[["alkaloids/ergotamine.yaml","ergotamine"],["amino_acids_and_peptides/leupeptin-a.yaml","leupeptin A"],["fatty_acids/all-cis-5-8-11-14-17-icosapentaenoic-acid.yaml","all-cis-5,8,11,14,17-icosapentaenoic acid"],["terpenoids/carotene.yaml","β-carotene"]]},{"id":"NCBITaxon:83333","l":"Escherichia coli (strain K12)","na":17633,"nb":3,"a":[["EC%3A1.1.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.1.-.-","Acting on the CH-OH group of donors"],["EC%3A1.14.13.-","With NADH or NADPH as one donor, and incorporation of one atom of oxygen"],["EC%3A1.16.-.-","Oxidizing metal ions"],["EC%3A1.18.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.2.7.-","With an iron-sulfur protein as acceptor"]],"b":[["amino_acids_and_peptides/feglymycin.yaml","feglymycin"],["amino_acids_and_peptides/n-acetyltryptophan.yaml","N-acetyltryptophan"],["unclassified/telomestatin.yaml","telomestatin"]]},{"id":"NCBITaxon:9913","l":"Bos taurus","na":471,"nb":3,"a":[["IDPO%3A0000018","disorder to molten globule"],["IDPO%3A0000011","disorder to order"],["IDPO%3A0000019","disorder to pre-molten globule"],["IDPO%3A0000030","entropic chain"],["IDPO%3A0000003","molten globule"],["IDPO%3A0000014","order to disorder"]],"b":[["alkaloids/methylarcyriarubin.yaml","methylarcyriarubin"],["alkaloids/staurosporine-2.yaml","staurosporine"],["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"DOI:10.1023/B","l":"","na":31,"nb":3,"a":[["RHEA%3A14581","2 monodehydro-L-ascorbate radical + NADH + H(+) = 2 L-ascorbate + NAD(+)"],["RHEA%3A10780","(2R)-2-hydroxy-3-(4-hydroxyphenyl)propanoate + NAD(+) = 3-(4-hydroxyphenyl)pyruvate + NADH + H(+)"],["RHEA%3A10776","(2R)-2-hydroxy-3-(4-hydroxyphenyl)propanoate + NADP(+) = 3-(4-hydroxyphenyl)pyruvate + NADPH + H(+)"],["RHEA%3A57408","(2R)-3-(3,4-dihydroxyphenyl)lactate + NAD(+) = 3-(3,4-dihydroxyphenyl)pyruvate + NADH + H(+)"],["RHEA%3A57704","(2R)-3-(3,4-dihydroxyphenyl)lactate + NADP(+) = 3-(3,4-dihydroxyphenyl)pyruvate + NADPH + H(+)"],["RHEA%3A37923","(9Z,12Z,15Z)-octadecatrienoate + O2 = (8E,10S,12Z,15Z)-10-hydroperoxyoctadeca-8,12,15-trienoate"]],"b":[["alkaloids/pyochelin-i.yaml","pyochelin I"],["carbohydrates/tobramycin.yaml","tobramycin"],["polyketides/peloruside-a.yaml","peloruside A"]]},{"id":"NCBITaxon:451804","l":"Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10)","na":28,"nb":3,"a":[["Pfam%3APF28347","ACE1 small beta sheet domain"],["Pfam%3APF28329","Zinc finger transcription factor ace1 N-terminal domain"],["Pfam%3APF11001","YDR124W-like, helical bundle domain"],["Pfam%3APF28457","Probable beta-glucosidase btgE N-terminal domain"],["Pfam%3APF13373","DSC E3 ubiquitin ligase complex subunit 3, C-terminal domain"],["Pfam%3APF10302","DSC E3 ubiquitin ligase complex subunit 3, ubiquitin-like domain"]],"b":[["terpenoids/21-h-hopane-3beta-22-diol.yaml","21-β-H-hopane-3beta, 22-diol"],["terpenoids/compound-3-3.yaml","compound 3"],["terpenoids/fumihopaside-a.yaml","fumihopaside A"]]},{"id":"NCBITaxon:33178","l":"Aspergillus terreus","na":3,"nb":22,"a":[["Pfam%3APF28386","BfoA family C-terminal domain"],["Pfam%3APF28387","BfoA N-terminal domain"],["Pfam%3APF12351","Ca2+ regulator and membrane fusion protein Fig1"]],"b":[["alkaloids/asterriquinone-ct5.yaml","asterriquinone CT5"],["alkaloids/cytochalasin-e.yaml","cytochalasin E"],["alkaloids/dihydroisoflavipucine.yaml","dihydroisoflavipucine"],["alkaloids/terrequinone-a.yaml","terrequinone A"],["amino_acids_and_peptides/valactamide-a.yaml","valactamide A"],["polyketides/citreoviridin.yaml","citreoviridin"]]},{"id":"NCBITaxon:332648","l":"Botrytis cinerea B05.10","na":3,"nb":21,"a":[["Pfam%3APF01670","Glycosyl hydrolase family 12"],["PROSITE%3APS00776","Glycosyl hydrolases family 11 (GH11) active site signature 1"],["PROSITE%3APS00777","Glycosyl hydrolases family 11 (GH11) active site signature 2"]],"b":[["terpenoids/1-epibotrydial.yaml","1-epibotrydial"],["terpenoids/10-dehydroxy-dihydrobotrydialone.yaml","10-dehydroxy dihydrobotrydialone"],["terpenoids/10-epi-dihydrobotrydial.yaml","10-epi-dihydrobotrydial"],["terpenoids/10-oxo-dihydrobotrydial.yaml","10-Oxo-dihydrobotrydial"],["terpenoids/10-oxodehydrodihydrobotrydial.yaml","10-Oxodehydrodihydrobotrydial"],["terpenoids/10-oxodihydrobotry-1-9-4-5-diendial.yaml","10-Oxodihydrobotry-1(9),4(5)-diendial"]]},{"id":"NCBITaxon:54571","l":"Streptomyces venezuelae","na":3,"nb":21,"a":[["Pfam%3APF08990","Erythronolide synthase docking domain"],["TED%3AAF-A0A5P2CQV7-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A5P2CQV7-F1-model_v4_TED02"],["TED%3AAF-A0A5P2C5X4-F1-model_v4_TED01","TED novel fold AF-A0A5P2C5X4-F1-model_v4_TED01"]],"b":[["alkaloids/anthelvencin-a.yaml","anthelvencin A"],["alkaloids/anthelvencin-b.yaml","anthelvencin B"],["alkaloids/anthelvencin-c.yaml","anthelvencin C"],["alkaloids/chloramphenicol.yaml","chloramphenicol"],["alkaloids/corynecin-ii.yaml","corynecin II"],["alkaloids/gaburedin-d.yaml","gaburedin D"]]},{"id":"UniProt:P22303","l":"","na":21,"nb":3,"a":[["ComplexPortal%3ACPX-10631","-"],["ComplexPortal%3ACPX-11637","-"],["ComplexPortal%3ACPX-12676","-"],["ComplexPortal%3ACPX-14124","-"],["ComplexPortal%3ACPX-18577","-"],["ComplexPortal%3ACPX-24024","-"]],"b":[["alkaloids/huperzine-a.yaml","huperzine A"],["alkaloids/physostigmine.yaml","physostigmine"],["unclassified/aflatoxin-b1.yaml","aflatoxin B1"]]},{"id":"NCBITaxon:332952","l":"Aspergillus flavus NRRL3357","na":3,"nb":20,"a":[["Pfam%3APF10014","2OG-Fe dioxygenase"],["Pfam%3APF22041","Glutathione S-transferase, C-terminal domain"],["Pfam%3APF08493","Aflatoxin regulatory protein"]],"b":[["alkaloids/actinopolymorphol-c.yaml","actinopolymorphol C"],["alkaloids/c-3-sulfonylated-derivative.yaml","C-3 sulfonylated derivative"],["alkaloids/imizoquin-c.yaml","imizoquin C"],["alkaloids/imizoquin-d.yaml","imizoquin D"],["alkaloids/leporin-b.yaml","leporin B"],["alkaloids/n-n-dioxide-containing-derivate.yaml","N,N-dioxide containing derivate"]]},{"id":"NCBITaxon:3847","l":"Glycine max","na":19,"nb":3,"a":[["Pfam%3APF02095","Extensin-like protein"],["Pfam%3APF00477","Small hydrophilic plant seed protein"],["IDPO%3A0000013","pre-molten globule to order"],["Pfam%3APF08027","Albumin I chain b"],["Pfam%3APF10539","Development and cell death domain"],["Pfam%3APF03386","Early nodulin 93 ENOD93 protein"]],"b":[["alkaloids/biotin.yaml","biotin"],["amino_acids_and_peptides/citrulline.yaml","citrulline"],["amino_acids_and_peptides/n-acetyltryptophan.yaml","N-acetyltryptophan"]]},{"id":"NCBITaxon:306","l":"Pseudomonas sp.","na":3,"nb":13,"a":[["Pfam%3APF14864","Alkyl sulfatase C-terminal"],["Pfam%3APF13816","Haem-containing dehydratase"],["Pfam%3APF14863","Alkyl sulfatase dimerisation"]],"b":[["unclassified/bananamide-d.yaml","bananamide D"],["unclassified/bananamide-e.yaml","bananamide E"],["unclassified/bananamide-f.yaml","bananamide F"],["unclassified/bananamide-g.yaml","bananamide G"],["unclassified/lokisin.yaml","lokisin"],["unclassified/pseudodesmin-a.yaml","pseudodesmin A"]]},{"id":"NCBITaxon:54","l":"Nannocystis exedens","na":13,"nb":3,"a":[["TED%3AAF-A0A1I2A5Z6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1I2A5Z6-F1-model_v4_TED01"],["TED%3AAF-A0A1I2FM38-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A1I2FM38-F1-model_v4_TED02"],["TED%3AAF-A0A1I2H0F9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1I2H0F9-F1-model_v4_TED01"],["TED%3AAF-A0A831ZMD9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A831ZMD9-F1-model_v4_TED01"],["TED%3AAF-A0A1I1T6U3-F1-model_v4_TED01","TED novel fold AF-A0A1I1T6U3-F1-model_v4_TED01"],["TED%3AAF-A0A1I1XLT5-F1-model_v4_TED02","TED novel fold AF-A0A1I1XLT5-F1-model_v4_TED02"]],"b":[["polyketides/phenylnannolone-a.yaml","phenylnannolone A"],["polyketides/phenylnannolone-b.yaml","phenylnannolone B"],["polyketides/phenylnannolone-c.yaml","phenylnannolone C"]]},{"id":"UniProt:Q8WZA2","l":"","na":3,"nb":10,"a":[["ComplexPortal%3ACPX-12363","-"],["CDD%3Acd04437","DEP_Epac"],["CATH%3A1.10.8.1240","CATH homologous superfamily 1.10.8.1240"]],"b":[["alkaloids/8-azaguanine.yaml","8-azaguanine"],["alkaloids/psilocybin.yaml","psilocybin"],["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["amino_acids_and_peptides/actinonin.yaml","actinonin"],["amino_acids_and_peptides/thiostrepton.yaml","thiostrepton"],["carbohydrates/tobramycin.yaml","tobramycin"]]},{"id":"UniProt:Q9BV86","l":"","na":10,"nb":3,"a":[["ComplexPortal%3ACPX-14881","-"],["ComplexPortal%3ACPX-15959","-"],["ComplexPortal%3ACPX-20462","-"],["ComplexPortal%3ACPX-23498","-"],["GO%3A0071885","N-terminal protein N-methyltransferase activity"],["GO%3A0018013","N-terminal peptidyl-glycine methylation"]],"b":[["fatty_acids/trans-aconitic-acid.yaml","trans-aconitic acid"],["polyketides/chlortetracycline.yaml","chlortetracycline"],["polyketides/kojic-acid.yaml","kojic acid"]]},{"id":"NCBITaxon:4081","l":"Solanum lycopersicum","na":9,"nb":3,"a":[["IDPO%3A0000011","disorder to order"],["Pfam%3APF02977","Carboxypeptidase A inhibitor"],["Pfam%3APF26410","GH family 5 beta-mannosidase-like"],["Pfam%3APF02496","ABA/WDS induced protein"],["Pfam%3APF17302","Family of unknown function (DUF5351)"],["PROSITE%3APS00502","Polygalacturonase active site"]],"b":[["fatty_acids/falcarindiol.yaml","falcarindiol"],["terpenoids/lycosantalonol.yaml","lycosantalonol"],["terpenoids/phellandrene.yaml","β-phellandrene"]]},{"id":"NCBITaxon:1971","l":"Streptomyces noursei","na":3,"nb":8,"a":[["Pfam%3APF16715","Cyclodipeptide synthase"],["Pfam%3APF19585","Family of unknown function (DUF6092)"],["TED%3AAF-A0A2N8PAT0-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2N8PAT0-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/curacomycin.yaml","curacomycin"],["amino_acids_and_peptides/dechlorocuracomycin.yaml","dechlorocuracomycin"],["amino_acids_and_peptides/deimino-antipain.yaml","deimino-antipain"],["carbohydrates/streptothricin-f.yaml","streptothricin F"],["polyketides/nystatin-a1.yaml","nystatin A1"],["polyketides/nystatin.yaml","nystatin"]]},{"id":"NCBITaxon:292","l":"Burkholderia cepacia","na":8,"nb":3,"a":[["Pfam%3APF14525","AraC-binding-like domain"],["Pfam%3APF06139","BphX-like"],["Pfam%3APF13340","Putative transposase of IS4/5 family (DUF4096)"],["Pfam%3APF11794","4-hydroxyphenylacetate 3-hydroxylase N terminal"],["Pfam%3APF03241","4-hydroxyphenylacetate 3-hydroxylase C terminal"],["MCSA%3A482","2,2-dialkylglycine decarboxylase (pyruvate)"]],"b":[["alkaloids/cepaciachelin.yaml","cepaciachelin"],["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["terpenoids/hopene.yaml","hopene"]]},{"id":"NCBITaxon:1833","l":"Rhodococcus erythropolis","na":7,"nb":3,"a":[["Pfam%3APF08028","Acyl-CoA dehydrogenase, C-terminal domain"],["Pfam%3APF13816","Haem-containing dehydratase"],["Pfam%3APF07858","Limonene-1,2-epoxide hydrolase catalytic domain"],["Pfam%3APF09663","Amidohydrolase ring-opening protein (Amido_AtzD_TrzD)"],["MCSA%3A361","aldoxime dehydratase"],["MCSA%3A644","limonene-1,2-epoxide hydrolase"]],"b":[["alkaloids/aurachin-re.yaml","aurachin RE"],["amino_acids_and_peptides/heterobactin-a.yaml","heterobactin A"],["amino_acids_and_peptides/heterobactin-s2.yaml","heterobactin S2"]]},{"id":"NCBITaxon:2021","l":"Thermobifida fusca","na":7,"nb":3,"a":[["Pfam%3APF00553","Cellulose binding domain"],["Pfam%3APF01341","Glycosyl hydrolases family 6"],["PROSITE%3APS00561","CBM2a (carbohydrate-binding type-2) domain signature"],["PROSITE%3APS00655","Glycosyl hydrolases family 6 signature 1"],["PROSITE%3APS00656","Glycosyl hydrolases family 6 signature 2"],["MCSA%3A559","cellulase (GH9)"]],"b":[["amino_acids_and_peptides/fuscachelin-a.yaml","Fuscachelin A"],["amino_acids_and_peptides/fuscachelin-b.yaml","Fuscachelin B"],["amino_acids_and_peptides/fuscachelin-c.yaml","Fuscachelin C"]]},{"id":"NCBITaxon:331117","l":"Aspergillus fischeri NRRL 181","na":3,"nb":7,"a":[["Pfam%3APF23681","ATP-dependent rRNA helicase SPB4-like, C-terminal tail"],["Pfam%3APF16803","Fe-S cluster assembly protein DRE2 N-terminus"],["Pfam%3APF02012","BNR/Asp-box repeat"]],"b":[["terpenoids/compound-5.yaml","compound 5"],["terpenoids/compound-6-2.yaml","compound 6"],["terpenoids/compound-7a.yaml","compound 7a"],["terpenoids/compound-8-2.yaml","compound 8"],["terpenoids/sesterfisheric-acid.yaml","sesterfisheric acid"],["terpenoids/sesterfisherol.yaml","sesterfisherol"]]},{"id":"NCBITaxon:1028729","l":"Fusarium pseudograminearum CS3096","na":3,"nb":6,"a":[["Pfam%3APF26087","Domain of unknown function (DUF8032)"],["Pfam%3APF05704","Capsular polysaccharide synthesis protein"],["TED%3AAF-K3V788-F1-model_v4_TED02","TED novel fold AF-K3V788-F1-model_v4_TED02"]],"b":[["alkaloids/8-oxo-fusatin.yaml","8-oxo-fusatin"],["alkaloids/8-oxo-isopentenyladenine.yaml","8-oxo-isopentenyladenine"],["alkaloids/fusatin.yaml","fusatin"],["alkaloids/fusatinic-acid.yaml","fusatinic acid"],["unclassified/w493-a.yaml","W493 A"],["unclassified/w493-b.yaml","W493 B"]]},{"id":"NCBITaxon:1894","l":"Kitasatospora aureofaciens","na":3,"nb":6,"a":[["Pfam%3APF01933","2-phospho-L-lactate transferase CofD"],["MCSA%3A459","guanyl-specific ribonuclease Sa"],["TED%3AAF-A0A1E7NF13-F1-model_v4_TED01","TED novel fold AF-A0A1E7NF13-F1-model_v4_TED01"]],"b":[["fatty_acids/triacsin-c.yaml","triacsin C"],["polyketides/auricin.yaml","auricin"],["polyketides/chlortetracycline.yaml","chlortetracycline"],["polyketides/lipomycin.yaml","α-lipomycin"],["polyketides/oxytetracycline.yaml","oxytetracycline"],["polyketides/venturicidin-a.yaml","venturicidin A"]]},{"id":"NCBITaxon:556","l":"Dickeya chrysanthemi","na":6,"nb":3,"a":[["Pfam%3APF18390","Glycogen debranching enzyme C-terminal domain"],["Pfam%3APF25994","AprE, long alpha-helical hairpin"],["Pfam%3APF02974","Protease inhibitor Inh"],["Pfam%3APF03812","2-keto-3-deoxygluconate permease"],["Pfam%3APF09589","HrpA pilus formation protein"],["MCSA%3A896","pectate lyase C (polysaccharide lyase 1 family)"]],"b":[["amino_acids_and_peptides/chrysobactin.yaml","chrysobactin"],["amino_acids_and_peptides/dichrysobactin.yaml","dichrysobactin"],["unclassified/cyclic-trichrysobactin.yaml","cyclic trichrysobactin"]]},{"id":"DOI:10.1038/s41589-020-0541-x","l":"","na":3,"nb":5,"a":[["RHEA%3A85075","augustate + 3 reduced [NADPH--hemoprotein reductase] + 3 O2 = medicagenate + 3 oxidized [NADPH--hemoprotein reductase] + 4 H2O + 4 H(+)"],["RHEA%3A85079","medicagenate + UDP-alpha-D-glucuronate = 3-O-(beta-D-glucuronosyl)-medicagenate + UDP + H(+)"],["RHEA%3A85071","oleanolate + reduced [NADPH--hemoprotein reductase] + O2 = augustate + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)"]],"b":[["terpenoids/yossoside-i.yaml","Yossoside I"],["terpenoids/yossoside-ii.yaml","Yossoside II"],["terpenoids/yossoside-iii.yaml","Yossoside III"],["terpenoids/yossoside-iv.yaml","Yossoside IV"],["terpenoids/yossoside-v.yaml","Yossoside V"]]},{"id":"NCBITaxon:112509","l":"Hordeum vulgare subsp. vulgare","na":3,"nb":4,"a":[["IDPO%3A0000004","pre-molten globule"],["IEDB%3A227903","epitope AAFRTAATAADAA"],["MCSA%3A790","glucan 1,3-beta-glucosidase"]],"b":[["fatty_acids/diketones.yaml","β-Diketones"],["terpenoids/11-hydroxy-hordetriene.yaml","11-hydroxy-hordetriene"],["terpenoids/hordediene.yaml","hordediene"],["terpenoids/hordetriene.yaml","hordetriene"]]},{"id":"NCBITaxon:269800","l":"","na":4,"nb":3,"a":[["Pfam%3APF20628","Dyp-type peroxidase, C-terminal"],["Pfam%3APF04261","Dyp-type peroxidase, N-terminal"],["Pfam%3APF18374","Enolase N-terminal domain-like"],["PROSITE%3APS00909","Mandelate racemase / muconate lactonizing enzyme family signature 2"]],"b":[["amino_acids_and_peptides/fuscachelin-a.yaml","Fuscachelin A"],["amino_acids_and_peptides/fuscachelin-b.yaml","Fuscachelin B"],["amino_acids_and_peptides/fuscachelin-c.yaml","Fuscachelin C"]]},{"id":"NCBITaxon:306901","l":"","na":4,"nb":3,"a":[["Pfam%3APF07960","CBP4"],["TED%3AAF-Q2GNU1-F1-model_v4_TED01","TED highly-symmetric fold AF-Q2GNU1-F1-model_v4_TED01"],["TED%3AAF-Q2GZS7-F1-model_v4_TED01","TED novel fold AF-Q2GZS7-F1-model_v4_TED01"],["TED%3AAF-Q2H4N9-F1-model_v4_TED02","TED novel fold AF-Q2H4N9-F1-model_v4_TED02"]],"b":[["polyketides/11-epichaetomugilin-a.yaml","11-epichaetomugilin A"],["polyketides/chaetoviridin-e.yaml","chaetoviridin E"],["polyketides/shanorellin.yaml","shanorellin"]]},{"id":"NCBITaxon:33","l":"Myxococcus fulvus","na":4,"nb":3,"a":[["TED%3AAF-A0A511SVC1-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A511SVC1-F1-model_v4_TED01"],["TED%3AAF-A0A511SU64-F1-model_v4_TED01","TED novel fold AF-A0A511SU64-F1-model_v4_TED01"],["TED%3AAF-A0A511T2U3-F1-model_v4_TED02","TED novel fold AF-A0A511T2U3-F1-model_v4_TED02"],["TED%3AAF-A0A511T9F8-F1-model_v4_TED05","TED novel fold AF-A0A511T9F8-F1-model_v4_TED05"]],"b":[["unclassified/fulvuthiacene-a.yaml","Fulvuthiacene A"],["unclassified/fulvuthiacene-b.yaml","Fulvuthiacene B"],["unclassified/myxothiazol.yaml","myxothiazol"]]},{"id":"NCBITaxon:34305","l":"Lotus japonicus","na":4,"nb":3,"a":[["Pfam%3APF06241","Castor and Pollux, part of voltage-gated ion channel"],["Pfam%3APF23654","E3 ubiquitin-protein ligase LIN-like, ARM repeat"],["Pfam%3APF23628","Putative E3 ubiquitin-protein ligase LIN, ARM-like domain"],["Pfam%3APF23568","E3 ubiquitin-protein ligase LIN-like, ARM repeat"]],"b":[["amino_acids_and_peptides/linamarin.yaml","linamarin"],["amino_acids_and_peptides/lotaustralin.yaml","lotaustralin"],["terpenoids/lupeol.yaml","lupeol"]]},{"id":"NCBITaxon:392500","l":"","na":3,"nb":4,"a":[["Pfam%3APF23763","GLAA-B beta-barrel domain I"],["TED%3AAF-B1KH33-F1-model_v4_TED01","TED novel fold AF-B1KH33-F1-model_v4_TED01"],["TED%3AAF-B1KQT1-F1-model_v4_TED01","TED novel fold AF-B1KQT1-F1-model_v4_TED01"]],"b":[["fatty_acids/woodybactin-d.yaml","woodybactin D"],["unclassified/woodybactin-a.yaml","woodybactin A"],["unclassified/woodybactin-b.yaml","woodybactin B"],["unclassified/woodybactin-c.yaml","woodybactin C"]]},{"id":"NCBITaxon:5544","l":"Trichoderma harzianum","na":4,"nb":3,"a":[["Pfam%3APF00840","Glycosyl hydrolase family 7"],["Pfam%3APF12708","Rhamnogalacturonase A/epimerase, pectate lyase-like"],["TED%3AAF-A0A0F9XDU3-F1-model_v4_TED01","TED novel fold AF-A0A0F9XDU3-F1-model_v4_TED01"],["TED%3AAF-A0A0G0ASL4-F1-model_v4_TED01","TED novel fold AF-A0A0G0ASL4-F1-model_v4_TED01"]],"b":[["polyketides/1-2-dehydropenicillide.yaml","1,2-dehydropenicillide"],["polyketides/harziphilone.yaml","harziphilone"],["unclassified/harzianopyridone.yaml","harzianopyridone"]]},{"id":"NCBITaxon:655844","l":"","na":3,"nb":4,"a":[["Pfam%3APF07110","EthD domain"],["Pfam%3APF09421","Frequency clock protein"],["TED%3AAF-A0A0B2XHY6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A0B2XHY6-F1-model_v4_TED01"]],"b":[["alkaloids/swainsonine.yaml","swainsonine"],["unclassified/destruxin-a.yaml","destruxin A"],["unclassified/subglutinol-a.yaml","subglutinol A"],["unclassified/subglutinol-b.yaml","subglutinol B"]]},{"id":"NCBITaxon:1003195","l":"","na":3,"nb":3,"a":[["Pfam%3APF23169","Halogenase D"],["Pfam%3APF02655","ATP-grasp domain"],["Pfam%3APF14518","Iron-containing redox enzyme"]],"b":[["amino_acids_and_peptides/cattlecin.yaml","cattlecin"],["amino_acids_and_peptides/ethynylserine.yaml","β-ethynylserine"],["terpenoids/cattleyene.yaml","cattleyene"]]},{"id":"NCBITaxon:1282","l":"Staphylococcus epidermidis","na":3,"nb":3,"a":[["Pfam%3APF14028","Lantibiotic biosynthesis dehydratase C-term"],["Pfam%3APF08130","Type A lantibiotic family"],["Pfam%3APF04738","Lantibiotic dehydratase, N terminus"]],"b":[["amino_acids_and_peptides/epidermin.yaml","epidermin"],["amino_acids_and_peptides/epilancin-15x.yaml","epilancin 15x"],["amino_acids_and_peptides/pep5.yaml","pep5"]]},{"id":"NCBITaxon:1406","l":"Paenibacillus polymyxa","na":3,"nb":3,"a":[["Pfam%3APF03423","Carbohydrate binding domain (family 25)"],["Pfam%3APF03422","Carbohydrate binding module (family 6)"],["TED%3AAF-A0A7X5SGP7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A7X5SGP7-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/polymyxin-b.yaml","polymyxin B"],["amino_acids_and_peptides/polymyxin.yaml","polymyxin"],["unclassified/fusaricidin-b.yaml","fusaricidin B"]]},{"id":"NCBITaxon:1961","l":"Streptomyces virginiae","na":3,"nb":3,"a":[["Pfam%3APF03756","A-factor biosynthesis hotdog domain"],["Pfam%3APF19328","2,4-diaminopentanoate dehydrogenase C-terminal domain"],["PROSITE%3APS01014","Transcription termination factor nusG signature"]],"b":[["alkaloids/endophenazine-a.yaml","endophenazine A"],["polyketides/monensin.yaml","monensin"],["unclassified/virginiamycin-s1.yaml","virginiamycin S1"]]},{"id":"NCBITaxon:216591","l":"Burkholderia cenocepacia J2315","na":3,"nb":3,"a":[["IEDB%3A230761","epitope FAKPAGTPM"],["IEDB%3A34250","epitope KVVRVDKL"],["Pfam%3APF04199","Putative cyclase"]],"b":[["unclassified/ornibactin-c4.yaml","ornibactin C4"],["unclassified/ornibactin-c6.yaml","ornibactin C6"],["unclassified/ornibactin-c8.yaml","ornibactin C8"]]},{"id":"NCBITaxon:384676","l":"","na":3,"nb":3,"a":[["Pfam%3APF18063","Beta barrel Pore-forming domain"],["Pfam%3APF08548","Peptidase M10 serralysin C terminal"],["TED%3AAF-Q1I2P2-F1-model_v4_TED01","TED novel fold AF-Q1I2P2-F1-model_v4_TED01"]],"b":[["alkaloids/labradorin-1.yaml","labradorin 1"],["alkaloids/labradorin-2.yaml","labradorin 2"],["alkaloids/pimprinine.yaml","pimprinine"]]},{"id":"NCBITaxon:448385","l":"","na":3,"nb":3,"a":[["TED%3AAF-A9FYP8-F1-model_v4_TED01","TED highly-symmetric fold AF-A9FYP8-F1-model_v4_TED01"],["TED%3AAF-A9G932-F1-model_v4_TED01","TED highly-symmetric fold AF-A9G932-F1-model_v4_TED01"],["TED%3AAF-A9F9E5-F1-model_v4_TED01","TED novel fold AF-A9F9E5-F1-model_v4_TED01"]],"b":[["polyketides/etnangien.yaml","etnangien"],["polyketides/soraphen-a.yaml","soraphen A"],["terpenoids/eremophilene.yaml","(+)-eremophilene"]]},{"id":"NCBITaxon:45133","l":"Lasiodiplodia theobromae","na":3,"nb":3,"a":[["TED%3AAF-A0A5N5DCC3-F1-model_v4_TED01","TED novel fold AF-A0A5N5DCC3-F1-model_v4_TED01"],["TED%3AAF-A0A5N5DDT9-F1-model_v4_TED01","TED novel fold AF-A0A5N5DDT9-F1-model_v4_TED01"],["TED%3AAF-A0A5N5DLG2-F1-model_v4_TED02","TED novel fold AF-A0A5N5DLG2-F1-model_v4_TED02"]],"b":[["polyketides/lasiodiplodin.yaml","lasiodiplodin"],["shikimates_and_phenylpropanoids/6-methylsalicylic-acid.yaml","6-methylsalicylic acid"],["shikimates_and_phenylpropanoids/mellein.yaml","(-)-Mellein"]]},{"id":"NCBITaxon:454130","l":"Aspergillus calidoustus","na":3,"nb":3,"a":[["Pfam%3APF28380","Sesquiterpene cyclase astC-like C-terminal domain"],["TED%3AAF-A0A0U5FXA2-F1-model_v4_TED01","TED novel fold AF-A0A0U5FXA2-F1-model_v4_TED01"],["TED%3AAF-A0A0U5GJ59-F1-model_v4_TED01","TED novel fold AF-A0A0U5GJ59-F1-model_v4_TED01"]],"b":[["terpenoids/calidoustene-a.yaml","calidoustene A"],["terpenoids/calidoustene-b.yaml","calidoustene B"],["terpenoids/calidoustene-c.yaml","calidoustene C"]]},{"id":"UniProt:P59594","l":"","na":3,"nb":3,"a":[["ComplexPortal%3ACPX-7088","SARS-CoV uncleaved Spike protein complex"],["proteintraitsmech%3AMEROPS_CLEAVAGE_S01_247","epitheliasin cleavage specificity"],["IDPO%3A0000048","limited proteolysis display site"]],"b":[["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"],["amino_acids_and_peptides/linaclotide.yaml","linaclotide"],["carbohydrates/kanamycin-a.yaml","kanamycin A"]]},{"id":"NCBITaxon:559292","l":"Saccharomyces cerevisiae (strain ATCC 204508 / S288c)","na":14515,"nb":2,"a":[["EC%3A1.14.18.-","With another compound as one donor, and incorporation of one atom of oxygen"],["EC%3A1.16.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.18.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.2.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.5.1.-","With NAD(+) or NADP(+) as acceptor"],["EC%3A1.8.-.-","Acting on a sulfur group of donors"]],"b":[["polyketides/kojic-acid.yaml","kojic acid"],["polyketides/radicicol.yaml","radicicol"]]},{"id":"NCBITaxon:224308","l":"Bacillus subtilis (strain 168)","na":11323,"nb":2,"a":[["EC%3A1.1.-.-","Acting on the CH-OH group of donors"],["EC%3A1.10.3.-","With oxygen as acceptor"],["EC%3A1.13.12.-","With incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)"],["EC%3A1.14.19.-","With oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water"],["EC%3A1.17.5.-","With a quinone or similar compound as acceptor"],["EC%3A1.21.98.-","With other, known acceptors"]],"b":[["unclassified/corynebactin.yaml","corynebactin"],["unclassified/pulcherriminic-acid.yaml","pulcherriminic acid"]]},{"id":"UniProt:P37840","l":"","na":102,"nb":2,"a":[["ComplexPortal%3ACPX-22614","-"],["ComplexPortal%3ACPX-25548","-"],["GO%3A0030424","axon"],["GO%3A0043679","axon terminus"],["GO%3A0005938","cell cortex"],["GO%3A0030426","growth cone"]],"b":[["amino_acids_and_peptides/actinonin.yaml","actinonin"],["polyketides/sirolimus.yaml","sirolimus"]]},{"id":"NCBITaxon:93061","l":"Staphylococcus aureus (strain NCTC 8325 / PS 47)","na":47,"nb":2,"a":[["IDPO%3A0000033","flexible linker"],["Pfam%3APF03373","Octapeptide repeat"],["Pfam%3APF07694","5TMR of 5TMR-LYT"],["Pfam%3APF01757","Acyltransferase domain"],["Pfam%3APF18719","ArlS sensor domain"],["Pfam%3APF02216","B domain"]],"b":[["amino_acids_and_peptides/staphyloferrin-b.yaml","staphyloferrin B"],["unclassified/staphyloferrin-a.yaml","staphyloferrin A"]]},{"id":"UniProt:P00519","l":"","na":42,"nb":2,"a":[["EC%3A2.7.10.2","non-specific protein-tyrosine kinase"],["ComplexPortal%3ACPX-20158","-"],["ComplexPortal%3ACPX-24443","-"],["ComplexPortal%3ACPX-24492","-"],["ComplexPortal%3ACPX-25676","-"],["GO%3A0000405","bubble DNA binding"]],"b":[["alkaloids/staurosporine-2.yaml","staurosporine"],["polyketides/emodin.yaml","emodin"]]},{"id":"UniProt:P24941","l":"","na":34,"nb":2,"a":[["ComplexPortal%3ACPX-10673","-"],["ComplexPortal%3ACPX-11851","-"],["ComplexPortal%3ACPX-13027","-"],["ComplexPortal%3ACPX-15343","-"],["ComplexPortal%3ACPX-19796","-"],["ComplexPortal%3ACPX-21602","-"]],"b":[["alkaloids/k-252a-2.yaml","K-252a"],["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"NCBITaxon:1912","l":"Streptomyces hygroscopicus","na":2,"nb":29,"a":[["Pfam%3APF21168","Chorismatase FkbO/Hyg5-like, N-terminal"],["TED%3AAF-A0A1S6RUT8-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1S6RUT8-F1-model_v4_TED01"]],"b":[["alkaloids/9-methylstreptimidone.yaml","9-methylstreptimidone"],["alkaloids/indigoidine-2.yaml","indigoidine"],["alkaloids/staurosporine-2.yaml","staurosporine"],["amino_acids_and_peptides/cyclothiazomycin.yaml","cyclothiazomycin"],["amino_acids_and_peptides/eponemycin.yaml","eponemycin"],["amino_acids_and_peptides/himastatin.yaml","himastatin"]]},{"id":"UniProt:O15296","l":"","na":26,"nb":2,"a":[["ComplexPortal%3ACPX-11775","-"],["ComplexPortal%3ACPX-23490","-"],["ComplexPortal%3ACPX-25286","-"],["GO%3A0050473","arachidonate 15-lipoxygenase activity"],["GO%3A0036403","arachidonate 8(S)-lipoxygenase activity"],["GO%3A0016165","linoleate 13S-lipoxygenase activity"]],"b":[["amino_acids_and_peptides/polymyxin.yaml","polymyxin"],["polyketides/tautomycetin.yaml","tautomycetin"]]},{"id":"UniProt:P62937","l":"","na":26,"nb":2,"a":[["ComplexPortal%3ACPX-16615","-"],["ComplexPortal%3ACPX-25278","-"],["GO%3A1904813","ficolin-1-rich granule lumen"],["GO%3A0016018","cyclosporin A binding"],["GO%3A1904399","heparan sulfate binding"],["GO%3A0003755","peptidyl-prolyl cis-trans isomerase activity"]],"b":[["amino_acids_and_peptides/cyclosporin-a.yaml","cyclosporin A"],["amino_acids_and_peptides/sanglifehrin-a.yaml","sanglifehrin A"]]},{"id":"UniProt:P06276","l":"","na":23,"nb":2,"a":[["ComplexPortal%3ACPX-12760","-"],["ComplexPortal%3ACPX-18032","-"],["ComplexPortal%3ACPX-20651","-"],["ComplexPortal%3ACPX-21068","-"],["ComplexPortal%3ACPX-21174","-"],["ComplexPortal%3ACPX-21255","-"]],"b":[["alkaloids/huperzine-a.yaml","huperzine A"],["alkaloids/physostigmine.yaml","physostigmine"]]},{"id":"NCBITaxon:1428","l":"Bacillus thuringiensis","na":21,"nb":2,"a":[["Pfam%3APF10014","2OG-Fe dioxygenase"],["Pfam%3APF28265","Lipoprotein N-acylation protein LnsA-like"],["Pfam%3APF16403","Bacterial surface protein, Ig-like domain"],["Pfam%3APF03944","delta endotoxin"],["Pfam%3APF03945","delta endotoxin, N-terminal domain"],["IEDB%3A125782","epitope CLRIPMTDK"]],"b":[["fatty_acids/trans-aconitic-acid.yaml","trans-aconitic acid"],["unclassified/andalusicin-a.yaml","andalusicin A"]]},{"id":"UniProt:P07203","l":"","na":21,"nb":2,"a":[["ComplexPortal%3ACPX-13707","-"],["ComplexPortal%3ACPX-15014","-"],["ComplexPortal%3ACPX-20814","-"],["ComplexPortal%3ACPX-20823","-"],["ComplexPortal%3ACPX-23329","-"],["ComplexPortal%3ACPX-23744","-"]],"b":[["shikimates_and_phenylpropanoids/ochratoxin-a.yaml","ochratoxin A"],["unclassified/beauvericin.yaml","beauvericin"]]},{"id":"UniProt:P63092","l":"","na":21,"nb":2,"a":[["GO%3A0005834","heterotrimeric G-protein complex"],["GO%3A0010856","adenylate cyclase activator activity"],["GO%3A0031748","D1 dopamine receptor binding"],["GO%3A0031683","G-protein beta/gamma-subunit complex binding"],["GO%3A0007190","activation of adenylate cyclase activity"],["GO%3A0038184","adenylate cyclase-activating G protein-coupled bile acid receptor signaling pathway"]],"b":[["alkaloids/4-hydroxy-2-quinolone.yaml","4-hydroxy-2-quinolone"],["polyketides/2-4-diacetylphloroglucinol.yaml","2,4-diacetylphloroglucinol"]]},{"id":"NCBITaxon:176299","l":"Agrobacterium fabrum (strain C58 / ATCC 33970)","na":19,"nb":2,"a":[["IDPO%3A0000031","flexible C-terminal tail"],["IDPO%3A0000032","flexible N-terminal tail"],["Pfam%3APF28403","Aconitase X second domain"],["Pfam%3APF28406","Aconitase X third domain"],["Pfam%3APF04412","Aconitase X first domain"],["Pfam%3APF01989","Aconitase X swivel domain"]],"b":[["amino_acids_and_peptides/fabrubactin-a.yaml","fabrubactin A"],["amino_acids_and_peptides/fabrubactin-b.yaml","fabrubactin B"]]},{"id":"NCBITaxon:455632","l":"Streptomyces griseus subsp. griseus NBRC 13350","na":2,"nb":17,"a":[["Pfam%3APF03756","A-factor biosynthesis hotdog domain"],["PROSITE%3APS01311","Prolipoprotein diacylglyceryl transferase signature"]],"b":[["alkaloids/grixazone-a.yaml","grixazone A"],["alkaloids/iminimycin-a.yaml","iminimycin A"],["alkaloids/iminimycin-b.yaml","iminimycin B"],["alkaloids/melanin.yaml","melanin"],["carbohydrates/streptomycin.yaml","streptomycin"],["fatty_acids/desferrioxamine-b.yaml","desferrioxamine B"]]},{"id":"NCBITaxon:630","l":"Yersinia enterocolitica","na":17,"nb":2,"a":[["Pfam%3APF05932","Tir chaperone protein (CesT) family"],["Pfam%3APF17656","FlgA N-terminal domain"],["Pfam%3APF22200","ExsA N-terminal regulatory domain"],["Pfam%3APF05171","Haemin-degrading HemS.ChuX domain"],["Pfam%3APF07201","HrpJ-like domain"],["Pfam%3APF04391","Protein of unknown function (DUF533)"]],"b":[["alkaloids/yersiniabactin-2.yaml","yersiniabactin"],["alkaloids/yersiniabactin.yaml","yersiniabactin"]]},{"id":"NCBITaxon:1360","l":"Lactococcus lactis subsp. lactis","na":16,"nb":2,"a":[["Pfam%3APF08951","Bacteriocin immunity protein family"],["Pfam%3APF08998","Bacterial epsilon antitoxin"],["Pfam%3APF25887","LcnD-like, long helical bundle domain"],["Pfam%3APF14028","Lantibiotic biosynthesis dehydratase C-term"],["Pfam%3APF25940","LcnD-like, C-terminal domain"],["Pfam%3APF08129","Alpha/beta enterocin family"]],"b":[["amino_acids_and_peptides/lacticin-481.yaml","lacticin 481"],["amino_acids_and_peptides/nisin-a.yaml","nisin A"]]},{"id":"DOI:10.1080/09168451.2018.1553605","l":"","na":15,"nb":2,"a":[["NCBIfam%3ANF041231","AfsR/SARP family transcriptional regulator BagI/FevR"],["NCBIfam%3ANF041224","bagremycin/ferroverdin biosynthesis 3,4-AHBA synthase BagC/FevH"],["NCBIfam%3ANF041221","bagremycin/ferroverdin biosynthesis copper chaperon BagZ/FevE"],["NCBIfam%3ANF041223","bagremycin/ferroverdin biosynthesis DhnA-type aldolase BagB/FevI"],["NCBIfam%3ANF041227","bagremycin/ferroverdin biosynthesis FAD-dependent oxygenase BagG/FevA2"],["NCBIfam%3ANF041226","bagremycin/ferroverdin biosynthesis FAD-dependent oxygenase BagK/FevA1"]],"b":[["shikimates_and_phenylpropanoids/bagremycin-a.yaml","bagremycin A"],["shikimates_and_phenylpropanoids/bagremycin-b.yaml","bagremycin B"]]},{"id":"NCBITaxon:29488","l":"Photorhabdus luminescens","na":2,"nb":14,"a":[["Pfam%3APF02273","Acyl transferase"],["PROSITE%3APS00494","Bacterial luciferase subunits signature"]],"b":[["alkaloids/photobactin.yaml","photobactin"],["alkaloids/pzn5.yaml","PZN5"],["amino_acids_and_peptides/gamexpeptide-c.yaml","gamexpeptide C"],["amino_acids_and_peptides/glidobactin.yaml","glidobactin"],["amino_acids_and_peptides/luminmycin-a.yaml","luminmycin A"],["polyketides/photopyrone-a.yaml","photopyrone A"]]},{"id":"NCBITaxon:759273","l":"Colletotrichum higginsianum IMI 349063","na":2,"nb":14,"a":[["TED%3AAF-A0A1B7Y9H0-F1-model_v4_TED01","TED novel fold AF-A0A1B7Y9H0-F1-model_v4_TED01"],["TED%3AAF-H1V1S2-F1-model_v4_TED01","TED novel fold AF-H1V1S2-F1-model_v4_TED01"]],"b":[["shikimates_and_phenylpropanoids/colletorin-d-acid.yaml","Colletorin D acid"],["shikimates_and_phenylpropanoids/o-orsellinic-acid.yaml","o-orsellinic acid"],["unclassified/13-epi-higginsianin-c.yaml","13-epi-higginsianin C"],["unclassified/colletochlorin-a.yaml","Colletochlorin A"],["unclassified/colletochlorin-b.yaml","Colletochlorin B"],["unclassified/colletochlorin-d.yaml","Colletochlorin D"]]},{"id":"NCBITaxon:271848","l":"Burkholderia thailandensis E264","na":2,"nb":12,"a":[["Pfam%3APF12091","Protein of unknown function (DUF3567)"],["Pfam%3APF01075","Glycosyltransferase family 9 (heptosyltransferase)"]],"b":[["alkaloids/malleobactin-b.yaml","malleobactin B"],["alkaloids/malleobactin-d.yaml","malleobactin D"],["polyketides/malleicyprol.yaml","malleicyprol"],["polyketides/malleilactone.yaml","malleilactone"],["polyketides/thailandamide-lactone.yaml","thailandamide lactone"],["polyketides/thailandamide.yaml","thailandamide"]]},{"id":"NCBITaxon:1111077","l":"Claviceps purpurea 20.1","na":2,"nb":11,"a":[["Pfam%3APF28338","AclK C-terminal domain"],["TED%3AAF-M1W301-F1-model_v4_TED01","TED highly-symmetric fold AF-M1W301-F1-model_v4_TED01"]],"b":[["alkaloids/ergotamine.yaml","ergotamine"],["polyketides/clavorubin.yaml","Clavorubin"],["polyketides/endocrocin.yaml","endocrocin"],["polyketides/o-orsellinate-depside.yaml","o-orsellinate depside"],["polyketides/secalonic-acid-a.yaml","Secalonic acid A"],["polyketides/secalonic-acid-b.yaml","Secalonic acid B"]]},{"id":"NCBITaxon:470","l":"Acinetobacter baumannii","na":11,"nb":2,"a":[["Pfam%3APF22829","HphA C-terminal domain"],["Pfam%3APF22828","HphA N-terminal heme-binding domain"],["Pfam%3APF28205","Ciprofloxacin tolerance protein"],["Pfam%3APF19582","Solute-binding protein AdeT 1/2"],["PROSITE%3APS00337","Beta-lactamase class-D active site"],["Pfam%3APF24575","Surface lipoprotein assembly modifier, N-terminal TPR repeats"]],"b":[["alkaloids/acinetobactin.yaml","acinetobactin"],["amino_acids_and_peptides/fimsbactin-a.yaml","fimsbactin A"]]},{"id":"UniProt:P11802","l":"","na":11,"nb":2,"a":[["ComplexPortal%3ACPX-10673","-"],["ComplexPortal%3ACPX-18434","-"],["ComplexPortal%3ACPX-20361","-"],["ComplexPortal%3ACPX-21602","-"],["ComplexPortal%3ACPX-26168","-"],["ComplexPortal%3ACPX-2010","Cyclin D1-CDK4 complex"]],"b":[["alkaloids/k-252a-2.yaml","K-252a"],["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"NCBITaxon:455432","l":"Nocardia terpenica","na":2,"nb":10,"a":[["TED%3AAF-A0A6G9ZDY9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A6G9ZDY9-F1-model_v4_TED01"],["TED%3AAF-A0A164L9V7-F1-model_v4_TED03","TED novel fold AF-A0A164L9V7-F1-model_v4_TED03"]],"b":[["amino_acids_and_peptides/nocapeptin-a.yaml","nocapeptin A"],["amino_acids_and_peptides/nocathioamide-a.yaml","nocathioamide A"],["polyketides/brasilinolide-a.yaml","brasilinolide A"],["polyketides/brasilinolide-b.yaml","brasilinolide B"],["polyketides/brasilinolide-c.yaml","brasilinolide C"],["polyketides/terpenomycin.yaml","terpenomycin"]]},{"id":"NCBITaxon:1159556","l":"Ustilaginoidea virens","na":2,"nb":9,"a":[["Pfam%3APF06966","Protein of unknown function (DUF1295)"],["TED%3AAF-A0A1B5L5W2-F1-model_v4_TED03","TED highly-symmetric fold AF-A0A1B5L5W2-F1-model_v4_TED03"]],"b":[["amino_acids_and_peptides/ustiloxin-b.yaml","ustiloxin B"],["polyketides/ustilaginoidin-a.yaml","ustilaginoidin A"],["polyketides/ustilaginoidin-d.yaml","ustilaginoidin D"],["polyketides/ustilaginoidin-e.yaml","ustilaginoidin E"],["polyketides/ustilaginoidin-f.yaml","ustilaginoidin F"],["polyketides/ustilaginoidin-g.yaml","ustilaginoidin G"]]},{"id":"NCBITaxon:158878","l":"Staphylococcus aureus (strain Mu50 / ATCC 700699)","na":9,"nb":2,"a":[["Pfam%3APF26317","Histidine racemase CntK N-terminal domain"],["Pfam%3APF13610","DDE domain"],["Pfam%3APF12199","Extracellular fibrinogen binding protein C terminal"],["Pfam%3APF26323","Staphylococcus aureus type VII secretion system substrate EsxC"],["Pfam%3APF19776","Family of unknown function (DUF6262)"],["Pfam%3APF27790","Poly-beta-1,6-N-acetyl-D-glucosamine synthesis protein IcaD"]],"b":[["amino_acids_and_peptides/feglymycin.yaml","feglymycin"],["amino_acids_and_peptides/staphylopine.yaml","staphylopine"]]},{"id":"NCBITaxon:57975","l":"Burkholderia thailandensis","na":2,"nb":9,"a":[["TED%3AAF-A0A7Z8HH79-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A7Z8HH79-F1-model_v4_TED01"],["TED%3AAF-A0A7Z8HK43-F1-model_v4_TED01","TED novel fold AF-A0A7Z8HK43-F1-model_v4_TED01"]],"b":[["fatty_acids/fr901464.yaml","FR901464"],["polyketides/malleicyprol.yaml","malleicyprol"],["polyketides/thailandamide-lactone.yaml","thailandamide lactone"],["polyketides/thailandamide.yaml","thailandamide"],["polyketides/thailanstatin-a.yaml","thailanstatin A"],["shikimates_and_phenylpropanoids/bactobolin.yaml","bactobolin"]]},{"id":"UniProt:P11309","l":"","na":9,"nb":2,"a":[["ComplexPortal%3ACPX-11827","-"],["ComplexPortal%3ACPX-16792","-"],["ComplexPortal%3ACPX-21719","-"],["ComplexPortal%3ACPX-26168","-"],["GO%3A1905062","positive regulation of cardioblast proliferation"],["GO%3A1905701","positive regulation of xenobiotic detoxification by transmembrane export across the plasma membrane"]],"b":[["alkaloids/k-252a-2.yaml","K-252a"],["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"DOI:10.1021/cb400541z","l":"","na":8,"nb":2,"a":[["RHEA%3A73919","2-(2,4-dihydroxy-6-oxidobenzoyl)-5-hydroxy-3-methylbenzenolate + H(+) = norlichexanthone + H2O"],["RHEA%3A73923","2-(2,4-dihydroxy-6-oxidobenzoyl)-5-hydroxy-3-methylbenzenolate + S-adenosyl-L-methionine = griseophenone D + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A73915","6 malonyl-CoA + acetyl-CoA + 4 H(+) = 2-(2,4-dihydroxy-6-oxidobenzoyl)-5-hydroxy-3-methylbenzenolate + 6 CO2 + 7 CoA + H2O"],["RHEA%3A73943","dehydrogriseofulvin + NADPH + H(+) = griseofulvin + NADP(+)"],["RHEA%3A73939","desmethyl-dehydrogriseofulvin + S-adenosyl-L-methionine = dehydrogriseofulvin + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A73935","griseophenone B + reduced [NADPH--hemoprotein reductase] + O2 + H(+) = desmethyl-dehydrogriseofulvin + oxidized [NADPH--hemoprotein reductase] + 2 H2O"]],"b":[["polyketides/epidechlorogriseofulvin.yaml","epidechlorogriseofulvin"],["polyketides/griseofulvin.yaml","griseofulvin"]]},{"id":"NCBITaxon:1404","l":"Priestia megaterium","na":8,"nb":2,"a":[["Pfam%3APF01890","Cobalamin synthesis G C-terminus"],["Pfam%3APF11761","Cobalamin biosynthesis central region"],["Pfam%3APF11760","Cobalamin synthesis G N-terminal"],["Pfam%3APF02570","Precorrin-8X methylmutase"],["PROSITE%3APS00304","Small, acid-soluble spore proteins, alpha/beta type, signature 1"],["PROSITE%3APS00684","Small, acid-soluble spore proteins, alpha/beta type, signature 2"]],"b":[["alkaloids/schizokinen.yaml","schizokinen"],["carbohydrates/oxetanocin-a.yaml","oxetanocin A"]]},{"id":"NCBITaxon:1908","l":"Streptomyces globisporus","na":2,"nb":8,"a":[["PROSITE%3APS00953","Glycosyl hydrolases family 25 active site signature"],["MCSA%3A245","tyrosine 2,3-aminomutase"]],"b":[["polyketides/c-1027-chromophore.yaml","C-1027 chromophore"],["polyketides/c-1027.yaml","C-1027"],["polyketides/landomycin-a.yaml","landomycin A"],["polyketides/nonactin.yaml","nonactin"],["polyketides/prejadomycin.yaml","prejadomycin"],["polyketides/tetranactin.yaml","tetranactin"]]},{"id":"NCBITaxon:303698","l":"Penicillium steckii","na":2,"nb":8,"a":[["TED%3AAF-A0A1V6TCF9-F1-model_v4_TED03","TED highly-symmetric fold AF-A0A1V6TCF9-F1-model_v4_TED03"],["TED%3AAF-A0A1V6U0I0-F1-model_v4_TED02","TED novel fold AF-A0A1V6U0I0-F1-model_v4_TED02"]],"b":[["unclassified/adametizine-a.yaml","adametizine A"],["unclassified/fa2097.yaml","FA2097"],["unclassified/outovirin-a.yaml","outovirin A"],["unclassified/outovirin-c.yaml","outovirin C"],["unclassified/penigainamide-a.yaml","penigainamide A"],["unclassified/penigainamide-b.yaml","penigainamide B"]]},{"id":"NCBITaxon:358","l":"Agrobacterium tumefaciens","na":8,"nb":2,"a":[["Pfam%3APF19443","DAHL domain"],["Pfam%3APF03135","CagE, TrbE, VirB family, component of type IV transporter system"],["Pfam%3APF03524","Conjugal transfer protein"],["Pfam%3APF27439","Chaperone protein DnaJ C-terminal region"],["Pfam%3APF10907","Protein of unknown function (DUF2749)"],["PROSITE%3APS00662","Bacterial type II secretion system protein E signature"]],"b":[["alkaloids/agrobactin.yaml","agrobactin"],["amino_acids_and_peptides/aztreonam.yaml","aztreonam"]]},{"id":"DOI:10.1073/pnas.1501124112","l":"","na":2,"nb":7,"a":[["NCBIfam%3ANF039717","DUF6292 family protein"],["InterPro%3AIPR046259","Domain of unknown function DUF6292"]],"b":[["amino_acids_and_peptides/clarexpoxcin-a.yaml","Clarexpoxcin A"],["amino_acids_and_peptides/clarexpoxcin-b.yaml","Clarexpoxcin B"],["amino_acids_and_peptides/clarexpoxcin-c.yaml","Clarexpoxcin C"],["amino_acids_and_peptides/clarexpoxcin-d.yaml","Clarexpoxcin D"],["amino_acids_and_peptides/clarexpoxcin-e.yaml","Clarexpoxcin E"],["polyketides/isofuranonaphthoquinone-c.yaml","Isofuranonaphthoquinone C"]]},{"id":"NCBITaxon:119927","l":"Alternaria tenuissima","na":7,"nb":2,"a":[["TED%3AAF-A0A4Q4MR18-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4Q4MR18-F1-model_v4_TED01"],["TED%3AAF-A0A4Q4M1N1-F1-model_v4_TED01","TED novel fold AF-A0A4Q4M1N1-F1-model_v4_TED01"],["TED%3AAF-A0A4Q4M2G6-F1-model_v4_TED01","TED novel fold AF-A0A4Q4M2G6-F1-model_v4_TED01"],["TED%3AAF-A0A4Q4MJL0-F1-model_v4_TED01","TED novel fold AF-A0A4Q4MJL0-F1-model_v4_TED01"],["TED%3AAF-A0A4Q4PGY1-F1-model_v4_TED01","TED novel fold AF-A0A4Q4PGY1-F1-model_v4_TED01"],["TED%3AAF-A0A4Q4RTT0-F1-model_v4_TED01","TED novel fold AF-A0A4Q4RTT0-F1-model_v4_TED01"]],"b":[["polyketides/patulin.yaml","patulin"],["polyketides/solanapyrone-a.yaml","solanapyrone A"]]},{"id":"NCBITaxon:1279085","l":"Fusarium fujikuroi IMI 58289","na":2,"nb":7,"a":[["Pfam%3APF12585","Virulence factor CipC-like"],["PROSITE%3APS00982","Bacterial-type phytoene dehydrogenase signature"]],"b":[["polyketides/bikaverin.yaml","bikaverin"],["polyketides/fujikurin-c.yaml","fujikurin C"],["polyketides/fujikurin-d.yaml","fujikurin D"],["polyketides/gibepyrone-a.yaml","gibepyrone A"],["terpenoids/acorenol.yaml","α-acorenol"],["terpenoids/koraiol.yaml","koraiol"]]},{"id":"NCBITaxon:1380566","l":"Pochonia chlamydosporia 170","na":2,"nb":7,"a":[["TED%3AAF-A0A179FUG8-F1-model_v4_TED01","TED novel fold AF-A0A179FUG8-F1-model_v4_TED01"],["TED%3AAF-A0A179FWH3-F1-model_v4_TED01","TED novel fold AF-A0A179FWH3-F1-model_v4_TED01"]],"b":[["polyketides/monocillin-ii.yaml","monocillin II"],["polyketides/monocillin-iv.yaml","monocillin IV"],["polyketides/monocillin-v.yaml","monocillin V"],["polyketides/monocillin-vi.yaml","monocillin VI"],["polyketides/monocillin-vii.yaml","monocillin VII"],["polyketides/monorden-d.yaml","monorden D"]]},{"id":"NCBITaxon:1421","l":"Lysinibacillus sphaericus","na":7,"nb":2,"a":[["Pfam%3APF16654","Diaminopimelic acid dehydrogenase C-terminal domain"],["Pfam%3APF03744","6-carboxyhexanoate--CoA ligase"],["PROSITE%3APS00836","Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1"],["PROSITE%3APS00837","Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2"],["MCSA%3A241","penicillin amidase (peptidase C59 family)"],["TED%3AAF-A0A2S5D092-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2S5D092-F1-model_v4_TED01"]],"b":[["alkaloids/biotin.yaml","biotin"],["carbohydrates/2-amino-2-deoxyadenosine.yaml","2'-amino-2'-deoxyadenosine"]]},{"id":"NCBITaxon:405948","l":"","na":2,"nb":7,"a":[["Pfam%3APF21036","Erythromycin biosynthesis protein CIII-like, N-terminal domain"],["MCSA%3A694","6-deoxyerythronolide B hydroxylase"]],"b":[["amino_acids_and_peptides/erythrochelin.yaml","erythrochelin"],["polyketides/erythromycin-a.yaml","erythromycin A"],["polyketides/erythromycin-b.yaml","erythromycin B"],["polyketides/erythromycin-c.yaml","erythromycin C"],["polyketides/erythromycin-d.yaml","erythromycin D"],["polyketides/flaviolin.yaml","flaviolin"]]},{"id":"DOI:10.1021/jacs.5b08319","l":"","na":2,"nb":6,"a":[["RHEA%3A54068","(2E,6E,10E,14E)-geranylfarnesyl diphosphate + H2O = sesterfisherol + diphosphate"],["RHEA%3A78407","sesterfisherol + 3 reduced [NADPH--hemoprotein reductase] + 3 O2 = sesterfisherate + 3 oxidized [NADPH--hemoprotein reductase] + 4 H2O + 4 H(+)"]],"b":[["terpenoids/compound-5.yaml","compound 5"],["terpenoids/compound-6-2.yaml","compound 6"],["terpenoids/compound-7a.yaml","compound 7a"],["terpenoids/compound-8-2.yaml","compound 8"],["terpenoids/sesterfisheric-acid.yaml","sesterfisheric acid"],["terpenoids/sesterfisherol.yaml","sesterfisherol"]]},{"id":"NCBITaxon:321","l":"Pseudomonas syringae pv. syringae","na":6,"nb":2,"a":[["Pfam%3APF03421","YopJ Serine/Threonine acetyltransferase"],["Pfam%3APF17914","HopA1 effector protein family"],["Pfam%3APF27361","HrcQa N-terminal domain"],["Pfam%3APF04877","HrpZ"],["PROSITE%3APS00314","Bacterial ice-nucleation proteins octamer repeat"],["Pfam%3APF00818","Ice nucleation protein repeat (2 copies)"]],"b":[["amino_acids_and_peptides/3-methylarginine.yaml","3-methylarginine"],["unclassified/syringopeptin-25a.yaml","syringopeptin 25A"]]},{"id":"NCBITaxon:5082","l":"Penicillium roqueforti","na":2,"nb":6,"a":[["Pfam%3APF07573","Nitrogen regulatory protein AreA N terminus"],["MCSA%3A261","aristolochene synthase"]],"b":[["alkaloids/mycophenolic-acid-2.yaml","mycophenolic acid"],["polyketides/mycophenolic-acid.yaml","mycophenolic acid"],["terpenoids/pr-toxin.yaml","PR-toxin"],["unclassified/andrastin-a.yaml","andrastin A"],["unclassified/roquefortine-c.yaml","roquefortine C"],["unclassified/roquefortine-d.yaml","roquefortine D"]]},{"id":"NCBITaxon:52","l":"Chondromyces crocatus","na":2,"nb":6,"a":[["TED%3AAF-A0A0K1ER44-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A0K1ER44-F1-model_v4_TED01"],["TED%3AAF-A0A0K1E854-F1-model_v4_TED01","TED novel fold AF-A0A0K1E854-F1-model_v4_TED01"]],"b":[["polyketides/chondrochloren-a.yaml","chondrochloren A"],["polyketides/cmc-thuggacin-a.yaml","Cmc-thuggacin A"],["polyketides/crocacin.yaml","crocacin"],["shikimates_and_phenylpropanoids/ajudazol-a.yaml","ajudazol A"],["unclassified/chondramide-a.yaml","chondramide A"],["unclassified/cmc-thuggacin-b.yaml","Cmc-thuggacin B"]]},{"id":"DOI:10.1023/A","l":"","na":5,"nb":2,"a":[["RHEA%3A24780","C-13(2)-carboxypyropheophorbide a + H(+) = pyropheophorbide a + CO2"],["RHEA%3A24776","pheophorbide a + H2O = C-13(2)-carboxypyropheophorbide a + methanol"],["RHEA%3A32483","pheophorbide a + H2O + H(+) = pyropheophorbide a + methanol + CO2"],["InterPro%3AIPR006151","Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase"],["InterPro%3AIPR036559","Bacteriochlorophyll A superfamily"]],"b":[["carbohydrates/lincomycin.yaml","lincomycin"],["terpenoids/culmorin.yaml","culmorin"]]},{"id":"DOI:10.1128/AEM.01172-14","l":"","na":5,"nb":2,"a":[["RHEA%3A78823","(3R)-5-guanidino-3-methyl-2-oxopentanoate + L-aspartate = (3R)-3-methyl-L-arginine + oxaloacetate"],["RHEA%3A32663","5-guanidino-2-oxopentanoate + S-adenosyl-L-methionine = (3R)-5-guanidino-3-methyl-2-oxopentanoate + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A78819","L-arginine + 2-oxoglutarate = 5-guanidino-2-oxopentanoate + L-glutamate"],["NCBIfam%3ATIGR04543","2-ketoarginine methyltransferase"],["NCBIfam%3ATIGR04544","beta-methylarginine biosynthesis bifunctional aminotransferase"]],"b":[["carbohydrates/arginomycin.yaml","arginomycin"],["carbohydrates/blasticidin-s.yaml","blasticidin S"]]},{"id":"NCBITaxon:220664","l":"","na":2,"nb":5,"a":[["Pfam%3APF18089","DAPG hydrolase PhiG domain"],["MCSA%3A269","muconate cycloisomerase (syn)"]],"b":[["alkaloids/pyoluteorin.yaml","pyoluteorin"],["polyketides/2-4-diacetylphloroglucinol.yaml","2,4-diacetylphloroglucinol"],["unclassified/orfamide-a.yaml","orfamide A"],["unclassified/orfamide-c.yaml","orfamide C"],["unclassified/pf-5-pyoverdine.yaml","Pf-5 pyoverdine"]]},{"id":"NCBITaxon:2795974","l":"Stieleria maiorica","na":2,"nb":5,"a":[["TED%3AAF-A0A5B9MHL4-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A5B9MHL4-F1-model_v4_TED02"],["TED%3AAF-A0A5B9MK37-F1-model_v4_TED03","TED novel fold AF-A0A5B9MK37-F1-model_v4_TED03"]],"b":[["alkaloids/stieleriacine-a1.yaml","stieleriacine A1"],["alkaloids/stieleriacine-a2.yaml","stieleriacine A2"],["fatty_acids/stieleriacine-c.yaml","stieleriacine C"],["unclassified/stieleriacine-b1.yaml","stieleriacine B1"],["unclassified/stieleriacine-b2.yaml","stieleriacine B2"]]},{"id":"NCBITaxon:305","l":"Ralstonia solanacearum","na":5,"nb":2,"a":[["Pfam%3APF14897","EpsG family"],["TED%3AAF-A0A7I8FQZ6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A7I8FQZ6-F1-model_v4_TED01"],["TED%3AAF-A0A7H1MI34-F1-model_v4_TED01","TED novel fold AF-A0A7H1MI34-F1-model_v4_TED01"],["TED%3AAF-A0A7I8FKL4-F1-model_v4_TED01","TED novel fold AF-A0A7I8FKL4-F1-model_v4_TED01"],["TED%3AAF-A0A850FKB0-F1-model_v4_TED01","TED novel fold AF-A0A850FKB0-F1-model_v4_TED01"]],"b":[["alkaloids/schizokinen.yaml","schizokinen"],["unclassified/micacocidin.yaml","micacocidin"]]},{"id":"NCBITaxon:380704","l":"Aspergillus niger ATCC 1015","na":2,"nb":5,"a":[["Pfam%3APF28387","BfoA N-terminal domain"],["MCSA%3A480","polygalacturonase"]],"b":[["polyketides/azanigerone-a.yaml","azanigerone A"],["polyketides/campyrone-b.yaml","campyrone B"],["polyketides/pyranonigrin-e.yaml","pyranonigrin E"],["polyketides/pyrophen.yaml","pyrophen"],["terpenoids/yanuthone-d.yaml","yanuthone D"]]},{"id":"NCBITaxon:394096","l":"Hyalangium minutum","na":5,"nb":2,"a":[["TED%3AAF-A0A085W4M3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A085W4M3-F1-model_v4_TED01"],["TED%3AAF-A0A085WRA7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A085WRA7-F1-model_v4_TED01"],["TED%3AAF-A0A085WWM4-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A085WWM4-F1-model_v4_TED01"],["TED%3AAF-A0A085W7S5-F1-model_v4_TED03","TED novel fold AF-A0A085W7S5-F1-model_v4_TED03"],["TED%3AAF-A0A085WH04-F1-model_v4_TED01","TED novel fold AF-A0A085WH04-F1-model_v4_TED01"]],"b":[["polyketides/nystatin-a1.yaml","nystatin A1"],["unclassified/myxochromide-d-2.yaml","myxochromide D"]]},{"id":"NCBITaxon:5270","l":"","na":5,"nb":2,"a":[["Pfam%3APF17445","Mating factor A1"],["Pfam%3APF24563","Mug60/KHD4 KH type I domain"],["IEDB%3A126316","epitope IPVHPRHPY"],["Pfam%3APF01185","Fungal hydrophobin"],["Pfam%3APF07460","NUMOD3 motif"]],"b":[["fatty_acids/itaconic-acid.yaml","itaconic acid"],["fatty_acids/ustilagic-acid.yaml","ustilagic acid"]]},{"id":"NCBITaxon:193462","l":"Streptomyces niveus","na":2,"nb":4,"a":[["Pfam%3APF16861","Carbamoyltransferase C-terminus"],["Pfam%3APF02543","Carbamoyltransferase N-terminus"]],"b":[["alkaloids/phenaziterpene-a.yaml","phenaziterpene A"],["carbohydrates/kanamycin-a.yaml","kanamycin A"],["shikimates_and_phenylpropanoids/cathomycin.yaml","cathomycin"],["unclassified/be-14106.yaml","BE-14106"]]},{"id":"NCBITaxon:394095","l":"Pyxidicoccus fallax","na":4,"nb":2,"a":[["TED%3AAF-A0A848LUK3-F1-model_v4_TED04","TED highly-symmetric fold AF-A0A848LUK3-F1-model_v4_TED04"],["TED%3AAF-A0A848LF16-F1-model_v4_TED01","TED novel fold AF-A0A848LF16-F1-model_v4_TED01"],["TED%3AAF-A0A848LFV1-F1-model_v4_TED03","TED novel fold AF-A0A848LFV1-F1-model_v4_TED03"],["TED%3AAF-A0A848LG55-F1-model_v4_TED01","TED novel fold AF-A0A848LG55-F1-model_v4_TED01"]],"b":[["polyketides/gulmirecin-a.yaml","gulmirecin A"],["unclassified/myxarylin.yaml","Myxarylin"]]},{"id":"NCBITaxon:426418","l":"Pyrenophora tritici-repentis Pt-1C-BFP","na":2,"nb":4,"a":[["TED%3AAF-B2VYP9-F1-model_v4_TED01","TED novel fold AF-B2VYP9-F1-model_v4_TED01"],["TED%3AAF-B2VZ40-F1-model_v4_TED02","TED novel fold AF-B2VZ40-F1-model_v4_TED02"]],"b":[["unclassified/triticone-a.yaml","triticone A"],["unclassified/triticone-b.yaml","triticone B"],["unclassified/triticone-c.yaml","triticone C"],["unclassified/triticone-f.yaml","triticone F"]]},{"id":"NCBITaxon:55601","l":"Vibrio anguillarum","na":4,"nb":2,"a":[["Pfam%3APF17327","Acyl homoserine lactone synthase"],["PROSITE%3APS00949","Autoinducer synthase family signature"],["TED%3AAF-A0A241NLV5-F1-model_v4_TED03","TED novel fold AF-A0A241NLV5-F1-model_v4_TED03"],["TED%3AAF-A0A290PUC4-F1-model_v4_TED02","TED novel fold AF-A0A290PUC4-F1-model_v4_TED02"]],"b":[["alkaloids/anguibactin.yaml","anguibactin"],["amino_acids_and_peptides/vanchrobactin.yaml","vanchrobactin"]]},{"id":"NCBITaxon:666","l":"Vibrio cholerae","na":4,"nb":2,"a":[["Pfam%3APF01375","Heat-labile enterotoxin alpha chain"],["Pfam%3APF09101","Exotoxin A binding"],["Pfam%3APF09009","Exotoxin A catalytic"],["Pfam%3APF09102","Exotoxin A, targeting"]],"b":[["alkaloids/vibriobactin-2.yaml","vibriobactin"],["alkaloids/vibriobactin.yaml","vibriobactin"]]},{"id":"UniProt:P02829","l":"","na":4,"nb":2,"a":[["ComplexPortal%3ACPX-1276","HMC complex"],["GO%3A0006458","'de novo' protein folding"],["GO%3A0043248","proteasome assembly"],["GO%3A0070482","response to oxygen levels"]],"b":[["polyketides/monocillin-iv.yaml","monocillin IV"],["polyketides/radicicol.yaml","radicicol"]]},{"id":"DOI:10.1002/anie.201902910","l":"","na":3,"nb":2,"a":[["RHEA%3A67476","dimethylallyl diphosphate + L-glutamate = prekainate + diphosphate"],["RHEA%3A68224","prekainate + 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AF-A0A447THJ9-F1-model_v4_TED01"]],"b":[["alkaloids/violacein-2.yaml","violacein"],["alkaloids/violacein.yaml","violacein"],["unclassified/romidepsin.yaml","romidepsin"]]},{"id":"NCBITaxon:550","l":"Enterobacter cloacae","na":3,"nb":2,"a":[["PROSITE%3APS00336","Beta-lactamase class-C active site"],["MCSA%3A257","beta-lactamase (Class C)"],["TED%3AAF-A0A155XQ59-F1-model_v4_TED02","TED novel fold AF-A0A155XQ59-F1-model_v4_TED02"]],"b":[["carbohydrates/2-amino-2-deoxyadenosine.yaml","2'-amino-2'-deoxyadenosine"],["terpenoids/mk-8.yaml","MK-8"]]},{"id":"NCBITaxon:5514","l":"Fusarium sporotrichioides","na":3,"nb":2,"a":[["Pfam%3APF22701","Mal s 1 allergenic protein-like"],["MCSA%3A262","trichodiene synthase"],["TED%3AAF-A0A395RG49-F1-model_v4_TED02","TED novel fold AF-A0A395RG49-F1-model_v4_TED02"]],"b":[["terpenoids/t-2-toxin.yaml","T-2 toxin"],["unclassified/beauvericin.yaml","beauvericin"]]},{"id":"NCBITaxon:553","l":"Pantoea ananatis","na":3,"nb":2,"a":[["PROSITE%3APS00314","Bacterial ice-nucleation proteins octamer repeat"],["PROSITE%3APS00982","Bacterial-type phytoene dehydrogenase signature"],["TED%3AAF-A0A7H8I034-F1-model_v4_TED01","TED novel fold AF-A0A7H8I034-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/aerobactin.yaml","aerobactin"],["terpenoids/carotenoid-2.yaml","carotenoid"]]},{"id":"NCBITaxon:663","l":"Vibrio alginolyticus","na":3,"nb":2,"a":[["Pfam%3APF04205","FMN-binding domain"],["Pfam%3APF10795","Protein of unknown function (DUF2607)"],["TED%3AAF-A0A1W6U0N2-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1W6U0N2-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/vibrioferrin-2.yaml","vibrioferrin"],["amino_acids_and_peptides/vibrioferrin.yaml","vibrioferrin"]]},{"id":"NCBITaxon:67267","l":"Streptomyces alboflavus","na":3,"nb":2,"a":[["TED%3AAF-A0A1Z1WH37-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A1Z1WH37-F1-model_v4_TED01"],["TED%3AAF-A0A291W4F3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A291W4F3-F1-model_v4_TED01"],["TED%3AAF-A0A291W5G3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A291W5G3-F1-model_v4_TED01"]],"b":[["alkaloids/thienodolin.yaml","thienodolin"],["terpenoids/2-methylisoborneol.yaml","2-methylisoborneol"]]},{"id":"NCBITaxon:69","l":"Lysobacter enzymogenes","na":3,"nb":2,"a":[["MCSA%3A609","alpha-lytic endopeptidase"],["TED%3AAF-A0A1J1E6A8-F1-model_v4_TED02","TED novel fold AF-A0A1J1E6A8-F1-model_v4_TED02"],["TED%3AAF-A0A7T8MLU2-F1-model_v4_TED03","TED novel fold AF-A0A7T8MLU2-F1-model_v4_TED03"]],"b":[["unclassified/heat-stable-antifungal-factor.yaml","heat-stable antifungal factor"],["unclassified/wap-8294a2.yaml","WAP-8294A2"]]},{"id":"DOI:10.1128/AEM.00478-08","l":"","na":2,"nb":2,"a":[["InterPro%3AIPR059857","Pneumocandin biosynthesis cluster protein B-like, C-terminal domain"],["NCBIfam%3ANF055577","Pneumocandin biosynthesis cluster protein B C-terminal 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acid"],["terpenoids/pr-toxin.yaml","PR-toxin"]]},{"id":"NCBITaxon:1392255","l":"","na":2,"nb":2,"a":[["Pfam%3APF08592","Anthrone oxygenase"],["TED%3AAF-A0A2I1CES2-F1-model_v4_TED03","TED novel fold AF-A0A2I1CES2-F1-model_v4_TED03"]],"b":[["polyketides/neosartorin.yaml","neosartorin"],["unclassified/novofumigatonin.yaml","novofumigatonin"]]},{"id":"NCBITaxon:247156","l":"","na":2,"nb":2,"a":[["Pfam%3APF19288","CofH/MqnC C-terminal region"],["Pfam%3APF17645","Arylmalonate decarboxylase"]],"b":[["amino_acids_and_peptides/nocobactin-na.yaml","nocobactin NA"],["unclassified/nocobactin-na-10152b.yaml","nocobactin NA 10152B"]]},{"id":"NCBITaxon:28112","l":"Tannerella forsythia","na":2,"nb":2,"a":[["Pfam%3APF21252","Glycosyl hydrolase 109, C-terminal domain"],["TED%3AAF-A0A3P1YJQ6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A3P1YJQ6-F1-model_v4_TED01"]],"b":[["carbohydrates/legionaminic-acid.yaml","legionaminic 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subunit"]],"b":[["carbohydrates/2-amino-2-deoxyadenosine.yaml","2'-amino-2'-deoxyadenosine"]]},{"id":"UniProt:P11511","l":"","na":15,"nb":1,"a":[["ComplexPortal%3ACPX-11590","-"],["ComplexPortal%3ACPX-12153","-"],["ComplexPortal%3ACPX-14456","-"],["ComplexPortal%3ACPX-20752","-"],["ComplexPortal%3ACPX-20895","-"],["ComplexPortal%3ACPX-20967","-"]],"b":[["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"UniProt:P21964","l":"","na":15,"nb":1,"a":[["ComplexPortal%3ACPX-13290","-"],["ComplexPortal%3ACPX-13949","-"],["ComplexPortal%3ACPX-14233","-"],["ComplexPortal%3ACPX-14264","-"],["ComplexPortal%3ACPX-19464","-"],["ComplexPortal%3ACPX-26179","-"]],"b":[["unclassified/6ar-11as-11br-10-acetyl-11-hydroxy-7-7-dimethyl-2-6-6a-7-11a-11b-hexahydro-9h-py.yaml","(6aR,11aS,11bR)-10-acetyl-11-hydroxy-7,7-dimethyl-2,6,6a,7,11a,11b-hexahydro-9H-pyrrolo[1',2':2,3]isoindolo[4,5,6-cd]indol-9-one"]]},{"id":"UniProt:P22748","l":"","na":15,"nb":1,"a":[["ComplexPortal%3ACPX-17339","-"],["ComplexPortal%3ACPX-17919","-"],["ComplexPortal%3ACPX-18486","-"],["ComplexPortal%3ACPX-19014","-"],["ComplexPortal%3ACPX-23066","-"],["ComplexPortal%3ACPX-23243","-"]],"b":[["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"UniProt:Q02779","l":"","na":15,"nb":1,"a":[["ComplexPortal%3ACPX-10957","-"],["ComplexPortal%3ACPX-11452","-"],["ComplexPortal%3ACPX-11502","-"],["ComplexPortal%3ACPX-11859","-"],["ComplexPortal%3ACPX-13254","-"],["ComplexPortal%3ACPX-13493","-"]],"b":[["alkaloids/k-252a-2.yaml","K-252a"]]},{"id":"NCBITaxon:1906","l":"Streptomyces 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activity"]],"b":[["carbohydrates/lincomycin.yaml","lincomycin"]]},{"id":"UniProt:P80192","l":"","na":14,"nb":1,"a":[["ComplexPortal%3ACPX-10957","-"],["ComplexPortal%3ACPX-11452","-"],["ComplexPortal%3ACPX-11502","-"],["ComplexPortal%3ACPX-13254","-"],["ComplexPortal%3ACPX-13493","-"],["ComplexPortal%3ACPX-14473","-"]],"b":[["alkaloids/k-252a-2.yaml","K-252a"]]},{"id":"UniProt:Q9NYY3","l":"","na":14,"nb":1,"a":[["ComplexPortal%3ACPX-18657","-"],["GO%3A0071866","negative regulation of apoptotic process in bone marrow cell"],["CDD%3Acd14188","STKc_PLK2"],["CDD%3Acd13118","POLO_box_1"],["CDD%3Acd13117","POLO_box_2"],["InterPro%3AIPR033701","First polo-box domain"]],"b":[["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"NCBITaxon:644","l":"Aeromonas hydrophila","na":13,"nb":1,"a":[["Pfam%3APF01117","Aerolysin toxin"],["Pfam%3APF03440","Aerolysin/Pertussis toxin (APT) domain"],["Pfam%3APF21327","GspA, peptidase C39-like domain"],["Pfam%3APF04231","Endonuclease 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N-methyltransferase"],["RHEA%3A19937","glycine + S-adenosyl-L-methionine = sarcosine + S-adenosyl-L-homocysteine + H(+)"],["ComplexPortal%3ACPX-10845","-"],["ComplexPortal%3ACPX-14981","-"],["ComplexPortal%3ACPX-21780","-"],["ComplexPortal%3ACPX-22832","-"]],"b":[["unclassified/6ar-11as-11br-10-acetyl-11-hydroxy-7-7-dimethyl-2-6-6a-7-11a-11b-hexahydro-9h-py.yaml","(6aR,11aS,11bR)-10-acetyl-11-hydroxy-7,7-dimethyl-2,6,6a,7,11a,11b-hexahydro-9H-pyrrolo[1',2':2,3]isoindolo[4,5,6-cd]indol-9-one"]]},{"id":"NCBITaxon:28095","l":"Burkholderia gladioli","na":1,"nb":12,"a":[["MCSA%3A466","fusarinine-C ornithinesterase"]],"b":[["alkaloids/gladiofungin-a.yaml","gladiofungin A"],["alkaloids/gladiofungin-b.yaml","gladiofungin B"],["alkaloids/toxoflavin.yaml","toxoflavin"],["amino_acids_and_peptides/arsinothricin.yaml","arsinothricin"],["amino_acids_and_peptides/bolagladin-a.yaml","bolagladin A"],["fatty_acids/bongkrekic-acid-2.yaml","bongkrekic acid"]]},{"id":"NCBITaxon:60172","l":"Penicillium solitum","na":1,"nb":12,"a":[["TED%3AAF-A0A1V6R6Y6-F1-model_v4_TED01","TED novel fold AF-A0A1V6R6Y6-F1-model_v4_TED01"]],"b":[["polyketides/dihydrobisvertinolone.yaml","dihydrobisvertinolone"],["polyketides/sorbicillin.yaml","sorbicillin"],["polyketides/terrestric-acid.yaml","terrestric acid"],["polyketides/tetrahydrobisvertinolone.yaml","tetrahydrobisvertinolone"],["shikimates_and_phenylpropanoids/6-methylsalicylic-acid.yaml","6-methylsalicylic acid"],["unclassified/penitrem-a.yaml","penitrem A"]]},{"id":"UniProt:P05129","l":"","na":12,"nb":1,"a":[["ComplexPortal%3ACPX-12748","-"],["ComplexPortal%3ACPX-19449","-"],["ComplexPortal%3ACPX-19476","-"],["ComplexPortal%3ACPX-24173","-"],["GO%3A0004698","calcium,diacylglycerol-dependent serine/threonine kinase activity"],["GO%3A0032425","positive regulation of mismatch repair"]],"b":[["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"UniProt:P0A853","l":"","na":12,"nb":1,"a":[["GO%3A0060187","cell pole"],["GO%3A0080146","L-cysteine desulfhydrase activity"],["GO%3A0016829","lyase activity"],["GO%3A0030955","potassium ion binding"],["GO%3A0009034","tryptophanase activity"],["GO%3A0042431","indole metabolic process"]],"b":[["amino_acids_and_peptides/n-acetyltryptophan.yaml","N-acetyltryptophan"]]},{"id":"UniProt:P31751","l":"","na":12,"nb":1,"a":[["ComplexPortal%3ACPX-10780","-"],["ComplexPortal%3ACPX-16948","-"],["ComplexPortal%3ACPX-22352","-"],["GO%3A0010748","negative regulation of long-chain fatty acid import across plasma membrane"],["GO%3A1903676","positive regulation of cap-dependent translational initiation"],["CDD%3Acd05595","STKc_PKB_beta"]],"b":[["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"UniProt:P40261","l":"","na":12,"nb":1,"a":[["EC%3A2.1.1.1","nicotinamide N-methyltransferase"],["RHEA%3A23884","nicotinamide + S-adenosyl-L-methionine = 1-methylnicotinamide + S-adenosyl-L-homocysteine"],["GO%3A0008112","nicotinamide N-methyltransferase activity"],["GO%3A0030760","pyridine N-methyltransferase activity"],["GO%3A0006769","nicotinamide metabolic process"],["GO%3A0090312","positive regulation of protein deacetylation"]],"b":[["unclassified/6ar-11as-11br-10-acetyl-11-hydroxy-7-7-dimethyl-2-6-6a-7-11a-11b-hexahydro-9h-py.yaml","(6aR,11aS,11bR)-10-acetyl-11-hydroxy-7,7-dimethyl-2,6,6a,7,11a,11b-hexahydro-9H-pyrrolo[1',2':2,3]isoindolo[4,5,6-cd]indol-9-one"]]},{"id":"UniProt:P48454","l":"","na":12,"nb":1,"a":[["ComplexPortal%3ACPX-1112","Calcineurin-Calmodulin-AKAP5 complex, gamma-R1 variant"],["ComplexPortal%3ACPX-1118","Calcineurin-Calmodulin-AKAP5 complex, gamma-R2 variant"],["ComplexPortal%3ACPX-1001","Calcineurin-Calmodulin complex, gamma-R1 variant"],["ComplexPortal%3ACPX-1050","Calcineurin-Calmodulin complex, gamma-R2 variant"],["ComplexPortal%3ACPX-17012","-"],["ComplexPortal%3ACPX-17541","-"]],"b":[["amino_acids_and_peptides/cyclosporin-a.yaml","cyclosporin A"]]},{"id":"UniProt:Q08881","l":"","na":12,"nb":1,"a":[["GO%3A0046629","gamma-delta T cell activation"],["GO%3A0001865","NK T cell differentiation"],["InterPro%3AIPR001562","Zinc finger, Btk motif"],["CDD%3Acd01238","PH_Btk"],["CDD%3Acd05112","PTKc_Itk"],["CDD%3Acd10396","SH2_Tec_Itk"]],"b":[["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"NCBITaxon:1352","l":"Enterococcus faecium","na":11,"nb":1,"a":[["Pfam%3APF01721","Class II bacteriocin"],["Pfam%3APF13700","Domain of unknown function (DUF4158)"],["Pfam%3APF07478","D-ala D-ala ligase C-terminus"],["Pfam%3APF01820","D-ala D-ala ligase N-terminus"],["PROSITE%3APS60030","Bacteriocin class IIa family signature"],["PROSITE%3APS00843","D-alanine--D-alanine ligase signature 1"]],"b":[["amino_acids_and_peptides/enterocin-a.yaml","enterocin A"]]},{"id":"NCBITaxon:266","l":"Paracoccus denitrificans","na":11,"nb":1,"a":[["Pfam%3APF07835","Bacterial aa3 type cytochrome c oxidase subunit IV"],["Pfam%3APF04828","Glutathione-dependent formaldehyde-activating enzyme"],["Pfam%3APF16448","LapD/MoxY periplasmic domain"],["Pfam%3APF17267","Family of unknown function (DUF5333)"],["Pfam%3APF17272","Family of unknown function (DUF5337)"],["PROSITE%3APS00364","Bacterial quinoprotein dehydrogenases signature 2"]],"b":[["alkaloids/parabactin.yaml","parabactin"]]},{"id":"NCBITaxon:4113","l":"Solanum tuberosum","na":11,"nb":1,"a":[["Pfam%3APF02977","Carboxypeptidase A inhibitor"],["Pfam%3APF01474","Class-II DAHP synthetase family"],["Pfam%3APF23229","Alpha-glucan water dikinase, DUF7067"],["Pfam%3APF02446","4-alpha-glucanotransferase"],["Pfam%3APF22973","Alpha-glucan water dikinase, phosphohistidine-like domain"],["Pfam%3APF23166","Alpha-glucan water dikinase 1 Ig-like N-terminal domain"]],"b":[["fatty_acids/itaconic-acid.yaml","itaconic acid"]]},{"id":"UniProt:O60503","l":"","na":11,"nb":1,"a":[["ComplexPortal%3ACPX-10819","-"],["ComplexPortal%3ACPX-10882","-"],["ComplexPortal%3ACPX-14634","-"],["ComplexPortal%3ACPX-14903","-"],["ComplexPortal%3ACPX-17315","-"],["ComplexPortal%3ACPX-18747","-"]],"b":[["polyketides/chlortetracycline.yaml","chlortetracycline"]]},{"id":"UniProt:P00915","l":"","na":11,"nb":1,"a":[["ComplexPortal%3ACPX-11364","-"],["ComplexPortal%3ACPX-12060","-"],["ComplexPortal%3ACPX-14728","-"],["ComplexPortal%3ACPX-15000","-"],["ComplexPortal%3ACPX-25381","-"],["GO%3A0018820","cyanamide hydratase activity"]],"b":[["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"UniProt:Q9BX63","l":"","na":11,"nb":1,"a":[["ComplexPortal%3ACPX-4426","BRCA1-B complex"],["ComplexPortal%3ACPX-17429","-"],["ComplexPortal%3ACPX-26140","-"],["CDD%3Acd18788","SF2_C_XPD"],["CDD%3Acd17970","DEAHc_FancJ"],["InterPro%3AIPR006554","Helicase-like, DEXD box c2 type"]],"b":[["unclassified/telomestatin.yaml","telomestatin"]]},{"id":"DOI:10.1002/cbic.201000628","l":"","na":1,"nb":10,"a":[["NCBIfam%3ANF039627","DUF6023 family 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pre-guanitoxin N-hydroxylase GntA"],["NCBIfam%3ANF041365","guanitoxin biosynthesis L-arginine gamma (S) hydroxylase"],["NCBIfam%3ANF041363","guanitoxin biosynthesis L-enduracididine beta-hydroxylase GntD"],["NCBIfam%3ANF041358","guanitoxin biosynthesis MATE family efflux transporter GntT"],["NCBIfam%3ANF041257","guanitoxin biosynthesis MBL fold metallo-hydrolase GntH"]],"b":[["alkaloids/guanitoxin.yaml","guanitoxin"]]},{"id":"NCBITaxon:116188","l":"Streptomyces coeruleorubidus","na":1,"nb":10,"a":[["Pfam%3APF13732","ATP-binding protein DrrA1-3-like, C-terminal domain"]],"b":[["amino_acids_and_peptides/pacidamycin-1.yaml","pacidamycin 1"],["amino_acids_and_peptides/pacidamycin-2.yaml","pacidamycin 2"],["amino_acids_and_peptides/pacidamycin-3.yaml","pacidamycin 3"],["amino_acids_and_peptides/pacidamycin-4.yaml","pacidamycin 4"],["amino_acids_and_peptides/pacidamycin-5.yaml","pacidamycin 5"],["amino_acids_and_peptides/pacidamycin-6.yaml","pacidamycin 6"]]},{"id":"NCBITaxon:257313","l":"Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)","na":10,"nb":1,"a":[["Pfam%3APF03440","Aerolysin/Pertussis toxin (APT) domain"],["Pfam%3APF07411","Domain of unknown function (DUF1508)"],["Pfam%3APF25988","CyaD, alpha-helical hairpin domain"],["Pfam%3APF03497","Anthrax toxin LF subunit"],["Pfam%3APF02537","CrcB-like protein, Camphor Resistance (CrcB)"],["Pfam%3APF16970","Type-1 fimbrial protein, A"]],"b":[["amino_acids_and_peptides/alcaligin.yaml","alcaligin"]]},{"id":"NCBITaxon:316","l":"Stutzerimonas stutzeri","na":10,"nb":1,"a":[["Pfam%3APF12679","ABC-2 family transporter protein"],["Pfam%3APF09081","Glucan 1,4-alpha-maltotetraohydrolase, domain C"],["Pfam%3APF09459","Ethylbenzene dehydrogenase"],["Pfam%3APF08406","CbbQ/NirQ/NorQ C-terminal"],["Pfam%3APF11953","Domain of unknown function (DUF3470)"],["Pfam%3APF18793","Nitrous oxide reductase propeller repeat 2"]],"b":[["alkaloids/pyrrolnitrin.yaml","pyrrolnitrin"]]},{"id":"UniProt:P0A749","l":"","na":10,"nb":1,"a":[["GO%3A0008760","UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity"],["GO%3A0019277","UDP-N-acetylgalactosamine biosynthetic process"],["NCBIfam%3ANF006873","UDP-N-acetylglucosamine 1-carboxyvinyltransferase"],["NCBIfam%3ATIGR01072","UDP-N-acetylglucosamine 1-carboxyvinyltransferase"],["CDD%3Acd01555","UdpNAET"],["InterPro%3AIPR001986","Enolpyruvate transferase domain"]],"b":[["amino_acids_and_peptides/feglymycin.yaml","feglymycin"]]},{"id":"UniProt:P14679","l":"","na":10,"nb":1,"a":[["GO%3A0004503","tyrosinase activity"],["GO%3A0006726","eye pigment biosynthetic process"],["GO%3A0006583","melanin biosynthetic process from tyrosine"],["GO%3A0042438","melanin biosynthetic process"],["InterPro%3AIPR002227","Tyrosinase copper-binding domain"],["Pfam%3APF00264","Common central domain of tyrosinase"]],"b":[["polyketides/kojic-acid.yaml","kojic acid"]]},{"id":"UniProt:P15884","l":"","na":10,"nb":1,"a":[["ComplexPortal%3ACPX-11961","-"],["ComplexPortal%3ACPX-14266","-"],["ComplexPortal%3ACPX-14268","-"],["ComplexPortal%3ACPX-14282","-"],["ComplexPortal%3ACPX-21052","-"],["ComplexPortal%3ACPX-26210","-"]],"b":[["alkaloids/toxoflavin.yaml","toxoflavin"]]},{"id":"UniProt:P41240","l":"","na":10,"nb":1,"a":[["EC%3A2.7.10.4","[Src-family] C-terminal protein kinase"],["ComplexPortal%3ACPX-11775","-"],["ComplexPortal%3ACPX-18631","-"],["ComplexPortal%3ACPX-19439","-"],["GO%3A0042997","negative regulation of Golgi to plasma membrane protein transport"],["GO%3A0060368","regulation of Fc receptor mediated stimulatory signaling pathway"]],"b":[["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"NCBITaxon:4513","l":"Hordeum vulgare","na":9,"nb":1,"a":[["Pfam%3APF20241","Domain of unknown function (DUF6598)"],["PROSITE%3APS00771","Barwin domain signature 1"],["PROSITE%3APS00426","Cereal trypsin/alpha-amylase inhibitors family signature"],["PROSITE%3APS00725","Germin family signature"],["PROSITE%3APS00431","Small hydrophilic plant seed proteins signature"],["MCSA%3A397","alpha-amylase"]],"b":[["unclassified/roquefortine-c.yaml","roquefortine C"]]},{"id":"UniProt:P00811","l":"","na":9,"nb":1,"a":[["EC%3A3.5.2.6","beta-lactamase"],["RHEA%3A20401","a beta-lactam + H2O = a substituted beta-amino acid"],["GO%3A0017001","antibiotic catabolic process"],["NCBIfam%3ANF000185","BlaEC family class C beta-lactamase"],["NCBIfam%3ANF033085","class C beta-lactamase"],["NCBIfam%3ANF012173","CMY2/MIR/ACT/EC family class C beta-lactamase"]],"b":[["amino_acids_and_peptides/clavulanic-acid-2.yaml","clavulanic acid"]]},{"id":"UniProt:P23280","l":"","na":9,"nb":1,"a":[["ComplexPortal%3ACPX-11709","-"],["ComplexPortal%3ACPX-12376","-"],["ComplexPortal%3ACPX-12422","-"],["ComplexPortal%3ACPX-12445","-"],["ComplexPortal%3ACPX-13747","-"],["ComplexPortal%3ACPX-17694","-"]],"b":[["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"UniProt:P24666","l":"","na":9,"nb":1,"a":[["ComplexPortal%3ACPX-17111","-"],["ComplexPortal%3ACPX-18047","-"],["ComplexPortal%3ACPX-19744","-"],["ComplexPortal%3ACPX-26078","-"],["CDD%3Acd16343","LMWPTP"],["InterPro%3AIPR023485","Phosphotyrosine protein phosphatase I"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"UniProt:P43250","l":"","na":9,"nb":1,"a":[["ComplexPortal%3ACPX-15339","-"],["ComplexPortal%3ACPX-18479","-"],["ComplexPortal%3ACPX-21827","-"],["ComplexPortal%3ACPX-23485","-"],["ComplexPortal%3ACPX-26222","-"],["GO%3A0047696","beta-adrenergic receptor kinase activity"]],"b":[["carbohydrates/sangivamycin.yaml","sangivamycin"]]},{"id":"UniProt:Q14353","l":"","na":9,"nb":1,"a":[["ComplexPortal%3ACPX-17611","-"],["ComplexPortal%3ACPX-22207","-"],["ComplexPortal%3ACPX-25132","-"],["GO%3A0030731","guanidinoacetate N-methyltransferase activity"],["GO%3A0006601","creatine biosynthetic process"],["GO%3A0006600","creatine metabolic process"]],"b":[["unclassified/6ar-11as-11br-10-acetyl-11-hydroxy-7-7-dimethyl-2-6-6a-7-11a-11b-hexahydro-9h-py.yaml","(6aR,11aS,11bR)-10-acetyl-11-hydroxy-7,7-dimethyl-2,6,6a,7,11a,11b-hexahydro-9H-pyrrolo[1',2':2,3]isoindolo[4,5,6-cd]indol-9-one"]]},{"id":"UniProt:Q8JUX6","l":"","na":1,"nb":9,"a":[["proteintraitsmech%3ABIOLIP_LFO","LFO-binding site"]],"b":[["alkaloids/ergotamine.yaml","ergotamine"],["amino_acids_and_peptides/leupeptin-a.yaml","leupeptin A"],["amino_acids_and_peptides/linaclotide.yaml","linaclotide"],["fatty_acids/all-cis-5-8-11-14-17-icosapentaenoic-acid.yaml","all-cis-5,8,11,14,17-icosapentaenoic acid"],["polyketides/kojic-acid.yaml","kojic acid"],["polyketides/monactin.yaml","monactin"]]},{"id":"CHEBI:58515","l":"","na":8,"nb":1,"a":[["EC%3A1.14.11.55","ectoine hydroxylase"],["EC%3A3.5.4.44","ectoine hydrolase"],["EC%3A4.2.1.108","ectoine synthase"],["RHEA%3A17281","(2S)-4-acetamido-2-aminobutanoate = L-ectoine + H2O"],["RHEA%3A45740","L-ectoine + 2-oxoglutarate + O2 = 5-hydroxyectoine + succinate + CO2"],["RHEA%3A52304","L-ectoine + H2O = (2S)-2-acetamido-4-aminobutanoate"]],"b":[["amino_acids_and_peptides/ectoine.yaml","ectoine"]]},{"id":"DOI:10.1002/anie.202015105","l":"","na":1,"nb":8,"a":[["NCBIfam%3ANF055241","Acyl halogenase CylC-like"]],"b":[["unclassified/hapalosin-c.yaml","hapalosin C"],["unclassified/hapalosin-d.yaml","hapalosin D"],["unclassified/hapalosin-e.yaml","hapalosin E"],["unclassified/hapalosin-f.yaml","hapalosin F"],["unclassified/hapalosin-g.yaml","hapalosin G"],["unclassified/nocuolactylate-a.yaml","Nocuolactylate A"]]},{"id":"DOI:10.1111/1751-7915.12110","l":"","na":8,"nb":1,"a":[["NCBIfam%3ANF053550","BtrH-related acyltransferase DarH"],["NCBIfam%3ANF053536","DarG family dialkylresorcinol biosynthesis protein"],["NCBIfam%3ANF053539","dialkylresorcinol biosynthesis protein DarB"],["NCBIfam%3ANF053545","flexirubin biosynthesis protein DarG"],["NCBIfam%3ANF053551","flexirubin biosynthesis putative acyl-CoA ligase FlxY"],["NCBIfam%3ANF053542","flexirubin biosynthesis SDR family reductase FlxB"]],"b":[["polyketides/flexirubin.yaml","flexirubin"]]},{"id":"DOI:10.1128/AAC.01226-09","l":"","na":8,"nb":1,"a":[["RHEA%3A36263","hydroxyurea + O-acetyl-L-serine = O-ureido-L-serine + acetate + H(+)"],["RHEA%3A36791","N(omega)-hydroxy-L-arginine + H2O = hydroxyurea + L-ornithine"],["RHEA%3A36711","O-ureido-D-serine + ATP + H2O + H(+) = D-cycloserine + NH4(+) + ADP + CO2 + phosphate"],["RHEA%3A36707","O-ureido-L-serine = O-ureido-D-serine"],["NCBIfam%3ANF058666","D-cycloserine synthetase"],["NCBIfam%3ANF039383","DUF6225 family protein"]],"b":[["amino_acids_and_peptides/cycloserine.yaml","cycloserine"]]},{"id":"NCBITaxon:1703937","l":"Streptomyces sp. CB03234","na":1,"nb":8,"a":[["TED%3AAF-A0A1Q5LKM4-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A1Q5LKM4-F1-model_v4_TED02"]],"b":[["terpenoids/tiancilactone-a.yaml","tiancilactone A"],["terpenoids/tiancilactone-b.yaml","tiancilactone B"],["terpenoids/tiancilactone-c.yaml","tiancilactone C"],["terpenoids/tiancilactone-d.yaml","tiancilactone D"],["terpenoids/tiancilactone-e.yaml","tiancilactone E"],["terpenoids/tiancilactone-f.yaml","tiancilactone F"]]},{"id":"NCBITaxon:345341","l":"Kutzneria sp. 744","na":1,"nb":8,"a":[["TED%3AAF-W7SU68-F1-model_v4_TED01","TED novel fold AF-W7SU68-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/kutzneride-6.yaml","Kutzneride 6"],["unclassified/kutzneride-1.yaml","Kutzneride 1"],["unclassified/kutzneride-2.yaml","Kutzneride 2"],["unclassified/kutzneride-3.yaml","Kutzneride 3"],["unclassified/kutzneride-4.yaml","Kutzneride 4"],["unclassified/kutzneride-5.yaml","Kutzneride 5"]]},{"id":"NCBITaxon:380703","l":"Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)","na":8,"nb":1,"a":[["Pfam%3APF26341","tRNA 2-selenouridine synthase AAA domain"],["Pfam%3APF11890","Domain of unknown function (DUF3410)"],["Pfam%3APF11944","Protein of unknown function (DUF3461)"],["Pfam%3APF04356","Protein of unknown function (DUF489)"],["Pfam%3APF12563","Hemolytic toxin N terminal"],["Pfam%3APF04362","Bacterial Fe(2+) trafficking"]],"b":[["amino_acids_and_peptides/amonabactin-p-750.yaml","amonabactin P 750"]]},{"id":"NCBITaxon:40318","l":"Streptomyces nodosus","na":1,"nb":8,"a":[["TED%3AAF-A0A0B5DA96-F1-model_v4_TED01","TED novel fold AF-A0A0B5DA96-F1-model_v4_TED01"]],"b":[["alkaloids/melanin.yaml","melanin"],["amino_acids_and_peptides/aerobactin.yaml","aerobactin"],["amino_acids_and_peptides/coelichelin.yaml","coelichelin"],["amino_acids_and_peptides/ectoine.yaml","ectoine"],["amino_acids_and_peptides/siamycin-i.yaml","siamycin I"],["fatty_acids/butyrolactone.yaml","γ-butyrolactone"]]},{"id":"NCBITaxon:420953","l":"Paraburkholderia megapolitana","na":1,"nb":8,"a":[["proteintraitsmech%3AELIFE109154_GrbD","GrbD-type graminine biosynthesis protein family"]],"b":[["amino_acids_and_peptides/megapolibactin-a.yaml","megapolibactin A"],["amino_acids_and_peptides/megapolibactin-acyc.yaml","megapolibactin Acyc"],["amino_acids_and_peptides/megapolibactin-b.yaml","megapolibactin B"],["amino_acids_and_peptides/megapolibactin-c.yaml","megapolibactin C"],["amino_acids_and_peptides/megapolibactin-d.yaml","megapolibactin D"],["amino_acids_and_peptides/megapolibactin-e.yaml","megapolibactin E"]]},{"id":"NCBITaxon:492670","l":"Bacillus velezensis","na":1,"nb":8,"a":[["TED%3AAF-A0A7S9EWF1-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A7S9EWF1-F1-model_v4_TED02"]],"b":[["amino_acids_and_peptides/bacillomycin-d.yaml","bacillomycin D"],["amino_acids_and_peptides/bacilysin.yaml","bacilysin"],["polyketides/bacillaene.yaml","bacillaene"],["polyketides/difficidin.yaml","difficidin"],["polyketides/macrolactin-h.yaml","macrolactin H"],["unclassified/corynebactin.yaml","corynebactin"]]},{"id":"NCBITaxon:5062","l":"Aspergillus oryzae","na":1,"nb":8,"a":[["Pfam%3APF07335","Fungal chitosanase of glycosyl hydrolase group 75"]],"b":[["amino_acids_and_peptides/ferrichrome-2.yaml","ferrichrome"],["polyketides/2-acetyl-1-3-6-8-tetrahydroxynaphthalene.yaml","2-acetyl-1,3,6,8-tetrahydroxynaphthalene"],["polyketides/kojic-acid.yaml","kojic acid"],["terpenoids/aphidicolin.yaml","aphidicolin"],["unclassified/2-oxocyclopiazonic-acid.yaml","2-oxocyclopiazonic acid"],["unclassified/6ar-11as-11br-10-acetyl-11-hydroxy-7-7-dimethyl-2-6-6a-7-11a-11b-hexahydro-9h-py.yaml","(6aR,11aS,11bR)-10-acetyl-11-hydroxy-7,7-dimethyl-2,6,6a,7,11a,11b-hexahydro-9H-pyrrolo[1',2':2,3]isoindolo[4,5,6-cd]indol-9-one"]]},{"id":"NCBITaxon:78245","l":"Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)","na":8,"nb":1,"a":[["Pfam%3APF08882","Acetone carboxylase gamma subunit"],["Pfam%3APF19278","Hydantoinase/oxoprolinase C-terminal domain"],["IEDB%3A126169","epitope GQMYNMNTL"],["Pfam%3APF05378","Hydantoinase/oxoprolinase N-terminal region"],["Pfam%3APF01968","Hydantoinase/oxoprolinase"],["Pfam%3APF02538","Hydantoinase B/oxoprolinase"]],"b":[["terpenoids/zeaxanthin.yaml","zeaxanthin"]]},{"id":"UniProt:O96017","l":"","na":8,"nb":1,"a":[["ComplexPortal%3ACPX-16839","-"],["ComplexPortal%3ACPX-21166","-"],["GO%3A0044773","mitotic DNA damage checkpoint signaling"],["CDD%3Acd14084","STKc_Chk2"],["CDD%3Acd22666","FHA_CHK2"],["ELM%3AELME000425","DOC_PP2A_B56_1"]],"b":[["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"UniProt:Q8TD30","l":"","na":8,"nb":1,"a":[["ComplexPortal%3ACPX-11669","-"],["ComplexPortal%3ACPX-11684","-"],["ComplexPortal%3ACPX-18140","-"],["ComplexPortal%3ACPX-18547","-"],["ComplexPortal%3ACPX-25098","-"],["ComplexPortal%3ACPX-26258","-"]],"b":[["polyketides/monactin.yaml","monactin"]]},{"id":"CHEBI:16089","l":"","na":7,"nb":1,"a":[["EC%3A1.14.15.35","6-deoxyerythronolide B hydroxylase"],["EC%3A2.3.1.94","6-deoxyerythronolide-B synthase"],["RHEA%3A40299","6-deoxyerythronolide B + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = erythronolide B + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O"],["RHEA%3A23068","6 (S)-methylmalonyl-CoA + propanoyl-CoA + 6 NADPH + 12 H(+) = 6-deoxyerythronolide B + 6 CO2 + 6 NADP(+) + 7 CoA + H2O"],["MCSA%3A694","6-deoxyerythronolide B hydroxylase"],["MCSA%3A602","6-deoxyerythronolide-B synthase"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"DOI:10.1016/j.chembiol.2013.09.021","l":"","na":7,"nb":1,"a":[["RHEA%3A50408","1-(2-aminophenyl)decane-1,3-dione = 2-heptyl-4(1H)-quinolone + H2O"],["RHEA%3A50396","(2-aminobenzoyl)acetate + octanoyl-CoA + H(+) = 2-heptyl-4(1H)-quinolone + CO2 + CoA + H2O"],["RHEA%3A50472","anthraniloyl-CoA + malonyl-CoA + H(+) = (2-aminobenzoyl)acetyl-CoA + CO2 + CoA"],["RHEA%3A50400","L-cysteinyl-[PqsC protein] + octanoyl-CoA = S-octanoyl-L-cysteinyl-[PqsC protein] + CoA"],["RHEA%3A50476","L-cysteinyl-[PqsD protein] + anthraniloyl-CoA = S-anthraniloyl-L-cysteinyl-[PqsD protein] + CoA"],["RHEA%3A38543","S-anthraniloyl-L-cysteinyl-[PqsD protein] + malonyl-CoA + H(+) = L-cysteinyl-[PqsD protein] + (2-aminobenzoyl)acetyl-CoA + CO2"]],"b":[["alkaloids/2-heptylquinolin-4-1h-one.yaml","2-heptylquinolin-4(1H)-one"]]},{"id":"NCBITaxon:1314807","l":"Dendrothele bispora (strain CBS 962.96)","na":7,"nb":1,"a":[["TED%3AAF-A0A4S8L719-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4S8L719-F1-model_v4_TED01"],["TED%3AAF-A0A4S8LBA1-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A4S8LBA1-F1-model_v4_TED02"],["TED%3AAF-A0A4S8KM73-F1-model_v4_TED02","TED novel fold AF-A0A4S8KM73-F1-model_v4_TED02"],["TED%3AAF-A0A4S8KTD4-F1-model_v4_TED01","TED novel fold AF-A0A4S8KTD4-F1-model_v4_TED01"],["TED%3AAF-A0A4S8LE48-F1-model_v4_TED01","TED novel fold AF-A0A4S8LE48-F1-model_v4_TED01"],["TED%3AAF-A0A4S8MMV1-F1-model_v4_TED02","TED novel fold AF-A0A4S8MMV1-F1-model_v4_TED02"]],"b":[["amino_acids_and_peptides/dendrothelin-a.yaml","dendrothelin A"]]},{"id":"NCBITaxon:391037","l":"Salinispora arenicola CNS-205","na":1,"nb":7,"a":[["Pfam%3APF12072","RNase Y N-terminal region"]],"b":[["alkaloids/lymphostin.yaml","lymphostin"],["alkaloids/lymphostinol.yaml","lymphostinol"],["alkaloids/neolymphostin-b.yaml","neolymphostin b"],["alkaloids/neolymphostinol-b.yaml","neolymphostinol B"],["alkaloids/staurosporine.yaml","staurosporine"],["amino_acids_and_peptides/cyclomarin-d.yaml","cyclomarin D"]]},{"id":"NCBITaxon:4097","l":"Nicotiana tabacum","na":7,"nb":1,"a":[["Pfam%3APF02041","Auxin binding protein"],["Pfam%3APF12481","Aluminium induced protein"],["Pfam%3APF11995","Domain of unknown function (DUF3490)"],["Pfam%3APF07172","Glycine rich protein family"],["PROSITE%3APS00157","Ribulose bisphosphate carboxylase large chain active site"],["MCSA%3A265","5-epi-aristolochene synthase"]],"b":[["terpenoids/capsidiol.yaml","capsidiol"]]},{"id":"NCBITaxon:5476","l":"Candida albicans","na":7,"nb":1,"a":[["Pfam%3APF11766","Agglutinin-like protein, N-terminal domain"],["Pfam%3APF16856","Cell division control protein 4 dimerisation domain"],["Pfam%3APF18325","Fatty acid synthase subunit alpha Acyl carrier domain"],["Pfam%3APF18314","Fatty acid synthase type I helical domain"],["Pfam%3APF17828","N-terminal domain in fatty acid synthase subunit beta"],["Pfam%3APF05388","Carboxypeptidase Y pro-peptide"]],"b":[["unclassified/antimycin-a1b.yaml","antimycin A1B"]]},{"id":"NCBITaxon:5580","l":"Aureobasidium pullulans","na":7,"nb":1,"a":[["TED%3AAF-A0A4S8XR15-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4S8XR15-F1-model_v4_TED01"],["TED%3AAF-A0A4S8YVB9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4S8YVB9-F1-model_v4_TED01"],["TED%3AAF-A0A4S9KUA9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4S9KUA9-F1-model_v4_TED01"],["TED%3AAF-A0A4T0BHY6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4T0BHY6-F1-model_v4_TED01"],["TED%3AAF-A0A4S9MB45-F1-model_v4_TED01","TED novel fold AF-A0A4S9MB45-F1-model_v4_TED01"],["TED%3AAF-A0A4S9RE93-F1-model_v4_TED01","TED novel fold AF-A0A4S9RE93-F1-model_v4_TED01"]],"b":[["unclassified/abt1.yaml","AbT1"]]},{"id":"NCBITaxon:672","l":"Vibrio vulnificus","na":7,"nb":1,"a":[["Pfam%3APF03174","Chitobiase/beta-hexosaminidase C-terminal domain"],["Pfam%3APF08021","Siderophore-interacting FAD-binding domain"],["Pfam%3APF11575","FhuF 2Fe-2S C-terminal domain"],["Pfam%3APF27349","IcsB middle domain"],["Pfam%3APF21735","C-terminal repeat from RTX toxins"],["Pfam%3APF07634","RtxA repeat"]],"b":[["alkaloids/vulnibactin.yaml","vulnibactin"]]},{"id":"NCBITaxon:67339","l":"Streptomyces orinoci","na":1,"nb":7,"a":[["Pfam%3APF09277","Erythronolide synthase, docking"]],"b":[["polyketides/aureothin.yaml","aureothin"],["polyketides/orinocin.yaml","orinocin"],["polyketides/spectinabilin.yaml","spectinabilin"],["terpenoids/snf4435c.yaml","SNF4435C"],["terpenoids/snf4435d.yaml","SNF4435D"],["unclassified/neoantimycin-2.yaml","neoantimycin"]]},{"id":"NCBITaxon:68280","l":"Streptomyces violaceusniger","na":1,"nb":7,"a":[["TED%3AAF-A0A0X3VKA0-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A0X3VKA0-F1-model_v4_TED01"]],"b":[["fatty_acids/desulfoclethramycin.yaml","desulfoclethramycin"],["polyketides/be-24566b.yaml","BE-24566B"],["polyketides/elaiophylin.yaml","elaiophylin"],["polyketides/meridamycin-2.yaml","meridamycin"],["polyketides/nigericin.yaml","nigericin"],["terpenoids/2-methylisoborneol.yaml","2-methylisoborneol"]]},{"id":"NCBITaxon:817","l":"Bacteroides fragilis","na":7,"nb":1,"a":[["Pfam%3APF16376","N-terminal domain of fragilysin"],["MCSA%3A15","beta-lactamase (Class B1)"],["TED%3AAF-A0A412XR06-F1-model_v4_TED03","TED novel fold AF-A0A412XR06-F1-model_v4_TED03"],["TED%3AAF-A0A4V1EUI2-F1-model_v4_TED02","TED novel fold AF-A0A4V1EUI2-F1-model_v4_TED02"],["TED%3AAF-A0A5C6IXH5-F1-model_v4_TED01","TED novel fold AF-A0A5C6IXH5-F1-model_v4_TED01"],["TED%3AAF-A0A5C6L6G9-F1-model_v4_TED02","TED novel fold AF-A0A5C6L6G9-F1-model_v4_TED02"]],"b":[["fatty_acids/galactosylceramide.yaml","α-galactosylceramide"]]},{"id":"UniProt:P27296","l":"","na":7,"nb":1,"a":[["GO%3A0033677","DNA/RNA helicase activity"],["NCBIfam%3ANF008729","ATP-dependent DNA helicase DinG"],["InterPro%3AIPR006555","ATP-dependent helicase, C-terminal"],["InterPro%3AIPR006554","Helicase-like, DEXD box c2 type"],["InterPro%3AIPR014013","Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type"],["InterPro%3AIPR010614","RAD3-like helicase, DEAD"]],"b":[["unclassified/telomestatin.yaml","telomestatin"]]},{"id":"UniProt:P50135","l":"","na":7,"nb":1,"a":[["GO%3A0046539","histamine N-methyltransferase activity"],["GO%3A0001695","histamine catabolic process"],["GO%3A0001692","histamine metabolic process"],["GO%3A0006548","L-histidine catabolic process"],["Pfam%3APF13489","Methyltransferase domain"],["PROSITE%3APS51597","Histamine N-methyltransferase (EC 2.1.1.8) family profile"]],"b":[["unclassified/6ar-11as-11br-10-acetyl-11-hydroxy-7-7-dimethyl-2-6-6a-7-11a-11b-hexahydro-9h-py.yaml","(6aR,11aS,11bR)-10-acetyl-11-hydroxy-7,7-dimethyl-2,6,6a,7,11a,11b-hexahydro-9H-pyrrolo[1',2':2,3]isoindolo[4,5,6-cd]indol-9-one"]]},{"id":"UniProt:Q8IZQ5","l":"","na":7,"nb":1,"a":[["ComplexPortal%3ACPX-14418","-"],["ComplexPortal%3ACPX-17411","-"],["ComplexPortal%3ACPX-17423","-"],["ComplexPortal%3ACPX-17969","-"],["ComplexPortal%3ACPX-19650","-"],["ComplexPortal%3ACPX-22629","-"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"UniProt:Q92731","l":"","na":7,"nb":1,"a":[["GO%3A0030284","nuclear estrogen receptor activity"],["CDD%3Acd07171","NR_DBD_ER"],["CDD%3Acd06949","NR_LBD_ER"],["InterPro%3AIPR021064","Estrogen receptor beta-like, N-terminal"],["Pfam%3APF12497","Estrogen receptor beta"],["ELM%3AELME000053","MOD_GSK3_1"]],"b":[["shikimates_and_phenylpropanoids/naringenin.yaml","naringenin"]]},{"id":"UniProt:Q96LB1","l":"","na":7,"nb":1,"a":[["GO%3A0004985","G protein-coupled opioid receptor activity"],["GO%3A1990595","mast cell secretagogue receptor activity"],["GO%3A0045576","mast cell activation"],["CDD%3Acd15106","7tmA_MrgprX-like"],["InterPro%3AIPR017452","GPCR, rhodopsin-like, 7TM"],["PROSITE%3APS50262","G-protein coupled receptors family 1 profile"]],"b":[["alkaloids/thebaine.yaml","thebaine"]]},{"id":"UniProt:Q9FUZ2","l":"","na":7,"nb":1,"a":[["GO%3A0042586","peptide deformylase activity"],["NCBIfam%3ANF001159","peptide deformylase"],["NCBIfam%3ATIGR00079","peptide deformylase"],["CDD%3Acd00487","Pep_deformylase"],["Pfam%3APF01327","Polypeptide deformylase"],["InterPro%3AIPR036821","Peptide deformylase superfamily"]],"b":[["amino_acids_and_peptides/actinonin.yaml","actinonin"]]},{"id":"CHEBI:16536","l":"orcinol","na":6,"nb":1,"a":[["EC%3A1.14.13.6","orcinol 2-monooxygenase"],["EC%3A4.1.1.58","orsellinate decarboxylase"],["RHEA%3A63072","3 malonyl-CoA + acetyl-CoA + 3 H(+) = orcinol + 4 CO2 + 4 CoA"],["RHEA%3A19601","orcinol + NADH + O2 + H(+) = 2,3,5-trihydroxytoluene + NAD(+) + H2O"],["RHEA%3A80563","orcinol + S-adenosyl-L-methionine = 3-methoxy-5-methylphenol + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A16733","orsellinate + H(+) = orcinol + CO2"]],"b":[["unclassified/orcinol.yaml","orcinol"]]},{"id":"CHEBI:18365","l":"naphthalene-1,3,6,8-tetrol","na":6,"nb":1,"a":[["EC%3A1.1.1.252","tetrahydroxynaphthalene reductase"],["EC%3A2.3.1.233","1,3,6,8-tetrahydroxynaphthalene synthase"],["RHEA%3A41524","5 malonyl-CoA + 5 H(+) = naphthalene-1,3,6,8-tetrol + 5 CO2 + 5 CoA + H2O"],["RHEA%3A62700","naphtopyrone YWA1 + H2O = naphthalene-1,3,6,8-tetrol + acetoacetate + H(+)"],["RHEA%3A21908","scytalone + NADP(+) = naphthalene-1,3,6,8-tetrol + NADPH + H(+)"],["MCSA%3A891","Tetrahydroxynaphthalene reductase"]],"b":[["polyketides/naphthalene-1-3-6-8-tetrol.yaml","naphthalene-1,3,6,8-tetrol"]]},{"id":"CHEBI:63677","l":"","na":6,"nb":1,"a":[["EC%3A1.14.13.154","erythromycin 12 hydroxylase"],["EC%3A2.1.1.254","erythromycin 3'-O-methyltransferase"],["EC%3A2.4.1.278","3-alpha-mycarosylerythronolide B desosaminyl transferase"],["RHEA%3A32091","3-O-alpha-L-mycarosylerythronolide B + dTDP-alpha-D-desosamine = erythromycin D + dTDP + H(+)"],["RHEA%3A32631","erythromycin D + NADPH + O2 + H(+) = erythromycin C + NADP(+) + H2O"],["RHEA%3A32651","erythromycin D + S-adenosyl-L-methionine = erythromycin B + S-adenosyl-L-homocysteine + H(+)"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"DOI:10.1016/j.cell.2016.12.021","l":"","na":1,"nb":6,"a":[["NCBIfam%3ANF039691","DUF6219 family protein"]],"b":[["alkaloids/pzn10.yaml","PZN10"],["alkaloids/pzn11.yaml","PZN11"],["alkaloids/pzn5.yaml","PZN5"],["alkaloids/pzn6.yaml","PZN6"],["alkaloids/pzn7.yaml","PZN7"],["alkaloids/pzn9.yaml","PZN9"]]},{"id":"DOI:10.1073/pnas.0501424102","l":"","na":6,"nb":1,"a":[["RHEA%3A63356","(1S,4R)-2-(C-substituted-aminomethyl)-4-acyl-2-thiazoline-[protein] + O2 = (S)-2-(C-substituted-aminomethyl)-4-acyl-1,3-thiazole-[protein] + H2O2"],["RHEA%3A63360","(S,S)-2-(C-substituted-aminomethyl)-4-acyl-2-oxazoline-[protein] + O2 = (S)-2-(C-substituted-aminomethyl)-4-acyl-1,3-oxazole-[protein] + H2O2"],["RHEA%3A63364","(S,S)-2-(C-substituted-aminomethyl)-4-acyl-5-methyl-2-oxazoline-[protein] + O2 = (S)-2-(C-substituted-aminomethyl)-4-acyl-5-methyl-1,3-oxazole-[protein] + H2O2"],["InterPro%3AIPR031035","Cyanobactin cluster PatC/TenC/TruC protein"],["NCBIfam%3ATIGR04447","cyanobactin biosynthesis PatC/TenC/TruC family protein"],["NCBIfam%3ATIGR03895","PatA/PatG family cyanobactin maturation protease"]],"b":[["amino_acids_and_peptides/patellamide-a.yaml","patellamide A"]]},{"id":"NCBITaxon:1063","l":"Cereibacter sphaeroides","na":6,"nb":1,"a":[["Pfam%3APF25323","PilS-like transmembrane domain"],["Pfam%3APF02963","Restriction endonuclease EcoRI"],["PROSITE%3APS00968","Antenna complexes alpha subunits signature"],["PROSITE%3APS00974","Mannitol dehydrogenases signature"],["PROSITE%3APS00567","Phosphoribulokinase signature"],["MCSA%3A701","dimethylsulfoxide reductase"]],"b":[["terpenoids/carotenoid-2.yaml","carotenoid"]]},{"id":"NCBITaxon:128403","l":"Scytonema hofmannii PCC 7110","na":1,"nb":6,"a":[["TED%3AAF-A0A139X3P3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A139X3P3-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/scytocyclamide-a.yaml","scytocyclamide A"],["amino_acids_and_peptides/scytocyclamide-a2.yaml","scytocyclamide A2"],["amino_acids_and_peptides/scytocyclamide-b.yaml","scytocyclamide B"],["amino_acids_and_peptides/scytocyclamide-b2.yaml","scytocyclamide B2"],["amino_acids_and_peptides/scytocyclamide-b3.yaml","scytocyclamide B3"],["amino_acids_and_peptides/scytocyclamide-c.yaml","scytocyclamide C"]]},{"id":"NCBITaxon:1402","l":"Bacillus licheniformis","na":6,"nb":1,"a":[["Pfam%3APF09154","Alpha-amylase C-terminal"],["Pfam%3APF10779","Haemolysin XhlA"],["Pfam%3APF12730","ABC-2 family transporter protein"],["Pfam%3APF08181","DegQ (SacQ) family"],["Pfam%3APF08057","Erythromycin resistance leader peptide"],["Pfam%3APF14867","Lantibiotic alpha"]],"b":[["amino_acids_and_peptides/bacitracin.yaml","bacitracin"]]},{"id":"NCBITaxon:1877","l":"Micromonospora echinospora","na":1,"nb":6,"a":[["Pfam%3APF07091","Ribosomal RNA methyltransferase (FmrO)"]],"b":[["carbohydrates/2-deoxystreptamine.yaml","2-deoxystreptamine"],["carbohydrates/gentamicin-2.yaml","gentamicin"],["carbohydrates/gentamicin.yaml","gentamicin"],["polyketides/1-6-dihydro-8-propylanthraquinone.yaml","1,6-dihydro-8-propylanthraquinone"],["polyketides/calicheamicin.yaml","calicheamicin"],["polyketides/tiacumicin-b.yaml","tiacumicin B"]]},{"id":"NCBITaxon:1920","l":"Streptomyces nigrescens","na":1,"nb":6,"a":[["Pfam%3APF03995","Peptidase inhibitor family I36"]],"b":[["alkaloids/5athq-10a.yaml","5aTHQ-10a"],["alkaloids/5athq-9i.yaml","5aTHQ-9i"],["alkaloids/5athq-9n.yaml","5aTHQ-9n"],["alkaloids/stams-9i.yaml","STAMs-9i"],["alkaloids/stams-9n.yaml","STAMs-9n"],["polyketides/phoslactomycin-b.yaml","phoslactomycin B"]]},{"id":"NCBITaxon:1930","l":"Streptomyces scabiei","na":1,"nb":6,"a":[["TED%3AAF-A0A086GLG9-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A086GLG9-F1-model_v4_TED01"]],"b":[["alkaloids/nikkomycin-z.yaml","nikkomycin Z"],["amino_acids_and_peptides/thaxtomin-c.yaml","thaxtomin C"],["polyketides/oronofacic-acid.yaml","oronofacic acid"],["unclassified/n-coronafacoyl-l-isoleucine.yaml","N-coronafacoyl-L-isoleucine"],["unclassified/thaxtomin-a.yaml","thaxtomin A"],["unclassified/thaxtomin-b.yaml","thaxtomin B"]]},{"id":"NCBITaxon:278992","l":"Streptomyces ambofaciens ATCC 23877","na":1,"nb":6,"a":[["Pfam%3APF00553","Cellulose binding domain"]],"b":[["alkaloids/congocidine.yaml","congocidine"],["polyketides/spiramycin.yaml","spiramycin"],["polyketides/stambomycin-a.yaml","stambomycin A"],["polyketides/stambomycin-b.yaml","stambomycin B"],["polyketides/stambomycin-c.yaml","stambomycin C"],["polyketides/stambomycin-d.yaml","stambomycin D"]]},{"id":"NCBITaxon:3879","l":"Medicago sativa","na":6,"nb":1,"a":[["Pfam%3APF02095","Extensin-like protein"],["Pfam%3APF02431","Chalcone-flavanone isomerase"],["PROSITE%3APS00441","Chalcone and stilbene synthases active site"],["MCSA%3A621","caffeate O-methyltransferase"],["MCSA%3A196","chalcone isomerase"],["MCSA%3A355","naringenin-chalcone synthase"]],"b":[["amino_acids_and_peptides/citrulline.yaml","citrulline"]]},{"id":"NCBITaxon:46472","l":"Aspergillus versicolor","na":1,"nb":6,"a":[["Pfam%3APF13810","Domain of unknown function (DUF4185)"]],"b":[["alkaloids/psychrophilin-f.yaml","psychrophilin F"],["alkaloids/psychrophilin-g.yaml","psychrophilin G"],["polyketides/sterigmatocystin.yaml","sterigmatocystin"],["unclassified/chevalone-e.yaml","chevalone E"],["unclassified/notoamide-a.yaml","notoamide A"],["unclassified/psychrophilin-h.yaml","psychrophilin H"]]},{"id":"NCBITaxon:5833","l":"Plasmodium falciparum","na":6,"nb":1,"a":[["IDPO%3A0000037","molecular recognition display site"],["Pfam%3APF05403","Plasmodium histidine-rich protein (HRPII/III)"],["Pfam%3APF17986","EMP3-KAHRP-like N-terminal domain"],["Pfam%3APF03805","Cytoadherence-linked asexual protein"],["Pfam%3APF06589","Circumsporozoite-related antigen (CRA)"],["TED%3AAF-Q9U431-F1-model_v4_TED01","TED novel fold AF-Q9U431-F1-model_v4_TED01"]],"b":[["alkaloids/congocidine.yaml","congocidine"]]},{"id":"NCBITaxon:62977","l":"Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)","na":6,"nb":1,"a":[["Pfam%3APF03594","Benzoate membrane transport protein"],["Pfam%3APF27541","Citrate utilization protein B"],["Pfam%3APF05232","Chlorhexidine efflux transporter"],["PROSITE%3APS00083","Intradiol ring-cleavage dioxygenases signature"],["PROSITE%3APS00570","Bacterial ring hydroxylating dioxygenases alpha-subunit signature"],["Pfam%3APF11846","Virulence factor membrane-bound polymerase, C-terminal"]],"b":[["amino_acids_and_peptides/fimsbactin-a.yaml","fimsbactin A"]]},{"id":"NCBITaxon:882378","l":"","na":1,"nb":6,"a":[["Pfam%3APF01983","Guanylyl transferase CofC like"]],"b":[["amino_acids_and_peptides/endopyrrole-b.yaml","endopyrrole B"],["amino_acids_and_peptides/holrhizin-a.yaml","holrhizin A"],["amino_acids_and_peptides/holrhizin-b.yaml","holrhizin B"],["amino_acids_and_peptides/holrhizin-c.yaml","holrhizin C"],["amino_acids_and_peptides/holrhizin-d.yaml","holrhizin D"],["unclassified/endopyrrole-a.yaml","endopyrrole A"]]},{"id":"UniProt:Q9XUB2","l":"","na":6,"nb":1,"a":[["GO%3A0008187","poly-pyrimidine tract binding"],["InterPro%3AIPR000571","Zinc finger, CCCH-type"],["Pfam%3APF00642","Zinc finger C-x8-C-x5-C-x3-H type (and similar)"],["InterPro%3AIPR036855","Zinc finger, CCCH-type superfamily"],["PROSITE%3APS50103","Zinc finger C3H1-type profile"],["CATH%3A4.10.1000.10","Zinc finger, CCCH-type"]],"b":[["polyketides/pyrophen.yaml","pyrophen"]]},{"id":"CHEBI:27977","l":"","na":5,"nb":1,"a":[["EC%3A1.14.15.35","6-deoxyerythronolide B hydroxylase"],["EC%3A2.4.1.328","erythronolide mycarosyltransferase"],["RHEA%3A40299","6-deoxyerythronolide B + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = erythronolide B + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O"],["RHEA%3A41576","dTDP-beta-L-mycarose + erythronolide B = 3-O-alpha-L-mycarosylerythronolide B + dTDP + H(+)"],["MCSA%3A694","6-deoxyerythronolide B hydroxylase"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"CHEBI:58572","l":"N-[(5S)-5-ammonio-5-carboxylatopentanoyl]-L-cysteinyl-D-valinate","na":5,"nb":1,"a":[["EC%3A1.21.3.1","isopenicillin-N synthase"],["EC%3A6.3.2.26","N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase"],["RHEA%3A23196","L-2-aminoadipate + L-valine + L-cysteine + 3 ATP + H2O = N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine + 3 AMP + 3 diphosphate + 3 H(+)"],["RHEA%3A22428","N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine + O2 = isopenicillin N + 2 H2O"],["MCSA%3A145","isopenicillin-N synthase"]],"b":[["amino_acids_and_peptides/n-5s-5-ammonio-5-carboxylatopentanoyl-l-cysteinyl-d-valinate.yaml","N-[(5S)-5-ammonio-5-carboxylatopentanoyl]-L-cysteinyl-D-valinate"]]},{"id":"CHEBI:62219","l":"2-heptyl-4-quinolone","na":5,"nb":1,"a":[["EC%3A1.14.13.182","2-heptyl-3-hydroxy-4(1H)-quinolone synthase"],["EC%3A2.3.1.230","2-heptyl-4(1H)-quinolone synthase"],["RHEA%3A50408","1-(2-aminophenyl)decane-1,3-dione = 2-heptyl-4(1H)-quinolone + H2O"],["RHEA%3A50396","(2-aminobenzoyl)acetate + octanoyl-CoA + H(+) = 2-heptyl-4(1H)-quinolone + CO2 + CoA + H2O"],["RHEA%3A37871","2-heptyl-4(1H)-quinolone + NADH + O2 + H(+) = 2-heptyl-3-hydroxy-4(1H)-quinolone + NAD(+) + H2O"]],"b":[["alkaloids/2-heptylquinolin-4-1h-one.yaml","2-heptylquinolin-4(1H)-one"]]},{"id":"CHEBI:90888","l":"aurachin C","na":5,"nb":1,"a":[["EC%3A1.14.13.222","aurachin C monooxygenase/isomerase"],["RHEA%3A49000","aurachin C + NADH + O2 + H(+) = 4-hydroxy-2-methyl-3-oxo-4-[(2E,6E)-farnesyl]-3,4-dihydroquinoline 1-oxide + NAD(+) + H2O"],["RHEA%3A49012","aurachin C + NADH + O2 + H(+) = aurachin C epoxide + NAD(+) + H2O"],["RHEA%3A49004","aurachin C + NADPH + O2 + H(+) = 4-hydroxy-2-methyl-3-oxo-4-[(2E,6E)-farnesyl]-3,4-dihydroquinoline 1-oxide + NADP(+) + H2O"],["RHEA%3A49008","aurachin C + NADPH + O2 + H(+) = aurachin C epoxide + NADP(+) + H2O"]],"b":[["alkaloids/aurachin-c.yaml","aurachin C"]]},{"id":"DOI:10.1016/j.str.2007.12.020","l":"","na":5,"nb":1,"a":[["InterPro%3AIPR034136","Topoisomerase 6 subunit A/Spo11, TOPRIM domain"],["InterPro%3AIPR049333","Type II DNA topoisomerase VI subunit A, all-beta domain"],["NCBIfam%3ANF044616","All-beta domain in DNA topoisomerase VI alpha subunit"],["NCBIfam%3ANF044723","Topoisomerase 6 subunit A/Spo11, Toprim domain"],["PROSITE%3APDOC52041","Topoisomerase (Topo) IIB-type catalytic"]],"b":[["polyketides/radicicol.yaml","radicicol"]]},{"id":"DOI:10.1128/JB.181.13.4118-4124.1999","l":"","na":5,"nb":1,"a":[["InterPro%3AIPR024719","HpaB/PvcC/4-BUDH C-terminal"],["InterPro%3AIPR024674","HpaB/PvcC/4-BUDH N-terminal"],["NCBIfam%3ANF015214","4-hydroxyphenylacetate 3-hydroxylase C-terminal domain-containing protein"],["NCBIfam%3ANF023222","4-hydroxyphenylacetate 3-hydroxylase N-terminal domain-containing protein"],["NCBIfam%3ANF040299","DUF6011 domain-containing protein"]],"b":[["shikimates_and_phenylpropanoids/paerucumarin.yaml","paerucumarin"]]},{"id":"NCBITaxon:1110502","l":"Tistrella mobilis KA081020-065","na":1,"nb":5,"a":[["TED%3AAF-I3TTD1-F1-model_v4_TED03","TED novel fold AF-I3TTD1-F1-model_v4_TED03"]],"b":[["unclassified/dehydrodidemnin-b-aplidine.yaml","dehydrodidemnin B (aplidine)"],["unclassified/didemnin-b.yaml","didemnin B"],["unclassified/didemnin-x.yaml","didemnin X"],["unclassified/didemnin-y.yaml","didemnin Y"],["unclassified/nordidemnin-b.yaml","nordidemnin B"]]},{"id":"NCBITaxon:1437453","l":"Streptomyces leeuwenhoekii","na":1,"nb":5,"a":[["TED%3AAF-A0A0F7VQ57-F1-model_v4_TED03","TED novel fold AF-A0A0F7VQ57-F1-model_v4_TED03"]],"b":[["amino_acids_and_peptides/leepeptin.yaml","Leepeptin"],["polyketides/chaxamycin-a.yaml","chaxamycin A"],["polyketides/chaxamycin-b.yaml","chaxamycin B"],["polyketides/chaxamycin-c.yaml","chaxamycin C"],["polyketides/chaxamycin-d.yaml","chaxamycin D"]]},{"id":"NCBITaxon:1465","l":"Brevibacillus laterosporus","na":1,"nb":5,"a":[["TED%3AAF-A0A0F7BZ24-F1-model_v4_TED01","TED novel fold AF-A0A0F7BZ24-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/bogorol-a.yaml","bogorol A"],["amino_acids_and_peptides/tauramamide.yaml","tauramamide"],["shikimates_and_phenylpropanoids/basiliskamide-a.yaml","Basiliskamide A"],["unclassified/basiliskamide-b.yaml","Basiliskamide B"],["unclassified/laterocidine.yaml","laterocidine"]]},{"id":"NCBITaxon:176275","l":"Beauveria bassiana","na":1,"nb":5,"a":[["TED%3AAF-A0A2S7Y157-F1-model_v4_TED02","TED novel fold AF-A0A2S7Y157-F1-model_v4_TED02"]],"b":[["alkaloids/desmethylbassianin.yaml","desmethylbassianin"],["alkaloids/tenellin.yaml","tenellin"],["polyketides/oosporein.yaml","oosporein"],["unclassified/bassianolide.yaml","bassianolide"],["unclassified/beauvericin.yaml","beauvericin"]]},{"id":"NCBITaxon:226900","l":"","na":5,"nb":1,"a":[["IDPO%3A0000060","self-assembly"],["Pfam%3APF13535","ATP-grasp domain"],["Pfam%3APF14436","Bacterial EndoU nuclease"],["Pfam%3APF10803","Spore germination GerPB"],["MCSA%3A958","N-succinylamino acid racemase (type 2)"]],"b":[["amino_acids_and_peptides/thiocillin-i.yaml","thiocillin I"]]},{"id":"NCBITaxon:269797","l":"Methanosarcina barkeri str. Fusaro","na":5,"nb":1,"a":[["Pfam%3APF27274","Coenzyme F430 synthetase CfbE, C-terminal domain"],["Pfam%3APF02552","CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit"],["Pfam%3APF09505","Dimethylamine methyltransferase (Dimeth_PyL)"],["PROSITE%3APS00507","Nickel-dependent hydrogenases large subunit signature 1"],["MCSA%3A885","Serine-tRNA ligase (archaeal)"]],"b":[["alkaloids/coenzyme-f430.yaml","coenzyme F430"]]},{"id":"NCBITaxon:29303","l":"Streptomyces cattleya","na":1,"nb":5,"a":[["Pfam%3APF22636","Fluoroacetyl-CoA-specific thioesterase"]],"b":[["amino_acids_and_peptides/cattlecin.yaml","cattlecin"],["amino_acids_and_peptides/clavulanic-acid.yaml","clavulanic acid"],["amino_acids_and_peptides/ethynylserine.yaml","β-ethynylserine"],["amino_acids_and_peptides/thienamycin.yaml","thienamycin"],["terpenoids/cattleyene.yaml","cattleyene"]]},{"id":"NCBITaxon:318586","l":"Paracoccus denitrificans Pd1222","na":5,"nb":1,"a":[["Pfam%3APF27518","Heme exporter protein C"],["Pfam%3APF22039","Imidazolonepropionase-like composite domain, bacteria"],["IEDB%3A123936","epitope ALAAAGAAY"],["PROSITE%3APS01181","Ribosomal protein S21 signature"],["Pfam%3APF02239","Cytochrome D1 heme domain"]],"b":[["alkaloids/parabactin.yaml","parabactin"]]},{"id":"NCBITaxon:384","l":"Rhizobium leguminosarum","na":5,"nb":1,"a":[["Pfam%3APF10931","Protein of unknown function (DUF2735)"],["TED%3AAF-A0A1B1C3F3-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A1B1C3F3-F1-model_v4_TED02"],["TED%3AAF-A0A4Q8XNE1-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A4Q8XNE1-F1-model_v4_TED01"],["TED%3AAF-A0A6P0B3F8-F1-model_v4_TED02","TED novel fold AF-A0A6P0B3F8-F1-model_v4_TED02"],["TED%3AAF-A0A6P0DM15-F1-model_v4_TED01","TED novel fold AF-A0A6P0DM15-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/vicibactin.yaml","vicibactin"]]},{"id":"NCBITaxon:47427","l":"Armillaria gallica","na":5,"nb":1,"a":[["TED%3AAF-A0A2H3CFH3-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A2H3CFH3-F1-model_v4_TED02"],["TED%3AAF-A0A2H3DFZ3-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A2H3DFZ3-F1-model_v4_TED01"],["TED%3AAF-A0A2H3DTE1-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A2H3DTE1-F1-model_v4_TED02"],["TED%3AAF-A0A2H3E1R0-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A2H3E1R0-F1-model_v4_TED02"],["TED%3AAF-A0A2H3CX67-F1-model_v4_TED02","TED novel fold AF-A0A2H3CX67-F1-model_v4_TED02"]],"b":[["terpenoids/8-hydroxy-6-protoilludene.yaml","8α-hydroxy-6-protoilludene"]]},{"id":"NCBITaxon:5454","l":"","na":5,"nb":1,"a":[["TED%3AAF-A0A162YC52-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A162YC52-F1-model_v4_TED01"],["TED%3AAF-A0A163JCD7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A163JCD7-F1-model_v4_TED01"],["TED%3AAF-A0A163LJZ7-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A163LJZ7-F1-model_v4_TED02"],["TED%3AAF-A0A163LQ36-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A163LQ36-F1-model_v4_TED01"],["TED%3AAF-A0A163M9G4-F1-model_v4_TED01","TED novel fold AF-A0A163M9G4-F1-model_v4_TED01"]],"b":[["polyketides/solanapyrone-a.yaml","solanapyrone A"]]},{"id":"UniProt:P22629","l":"","na":5,"nb":1,"a":[["proteintraitsmech%3ABIOLIP_4IR","4IR-binding site"],["proteintraitsmech%3ABIOLIP_HL9","HL9-binding site"],["proteintraitsmech%3ABIOLIP_ZOE","ZOE-binding site"],["proteintraitsmech%3AMETALPDB_RH_DINUCLEAR","dinuclear rhodium site"],["proteintraitsmech%3AMETALPDB_CO_TETRANUCLEAR","tetranuclear cobalt site"]],"b":[["alkaloids/biotin.yaml","biotin"]]},{"id":"CHEBI:140434","l":"3-[(Z)-2-isocyanovinyl]indole","na":4,"nb":1,"a":[["EC%3A1.14.20.11","3-[(Z)-2-isocyanoethenyl]-1H-indole synthase"],["EC%3A2.5.1.146","3-geranyl-3-[(Z)-2-isocyanoethenyl]indole synthase"],["RHEA%3A56700","(2S)-3-(1H-indol-3-yl)-2-isocyanopropanoate + 2-oxoglutarate + O2 + H(+) = 3-[(Z)-2-isocyanoethenyl]-1H-indole + succinate + 2 CO2 + H2O"],["RHEA%3A17349","3-[(Z)-2-isocyanoethenyl]-1H-indole + (2E)-geranyl diphosphate = 3-geranyl-3-[(Z)-2-isocyanoethenyl]-1H-indole + diphosphate"]],"b":[["alkaloids/3-z-2-isocyanovinyl-indole.yaml","3-[(Z)-2-isocyanovinyl]indole"]]},{"id":"CHEBI:140442","l":"12-epi-fischerindole U isonitrile","na":4,"nb":1,"a":[["EC%3A1.14.20.14","hapalindole-type alkaloid chlorinase"],["EC%3A5.5.1.33","12-epi-fischerindole U synthase"],["RHEA%3A56764","12-epi-fischerindole U + chloride + 2-oxoglutarate + O2 + H(+) = 12-epi-fischerindole G + succinate + CO2 + H2O"],["RHEA%3A56456","3-geranyl-3-[(Z)-2-isocyanoethenyl]-1H-indole = 12-epi-fischerindole U"]],"b":[["alkaloids/12-epi-fischerindole-u-isonitrile.yaml","12-epi-fischerindole U isonitrile"]]},{"id":"CHEBI:155910","l":"aculene D","na":4,"nb":1,"a":[["RHEA%3A65112","aculene D + 2-oxoglutarate + O2 = aculene C + succinate + CO2 + H2O"],["RHEA%3A65104","aculene D + L-prolyl-[peptidyl-carrier protein] = aculene B + holo-[peptidyl-carrier protein]"],["RHEA%3A65084","asperaculane E + 2 reduced [NADPH--hemoprotein reductase] + 2 O2 = aculene D + 2 oxidized [NADPH--hemoprotein reductase] + CO2 + 3 H2O + H(+)"],["RHEA%3A65092","asperaculane G + reduced [NADPH--hemoprotein reductase] + O2 = aculene D + oxidized [NADPH--hemoprotein reductase] + CO2 + 2 H2O"]],"b":[["terpenoids/aculene-d.yaml","aculene D"]]},{"id":"CHEBI:16368","l":"6-hydroxymellein","na":4,"nb":1,"a":[["EC%3A2.1.1.108","6-hydroxymellein O-methyltransferase"],["RHEA%3A65248","5 malonyl-CoA + AH2 + 5 H(+) = 6-hydroxymellein + A + 5 CO2 + 5 CoA + H2O"],["RHEA%3A65252","6-hydroxymellein + (2E,6E)-farnesyl diphosphate = verruculide C + diphosphate"],["RHEA%3A15201","6-hydroxymellein + S-adenosyl-L-methionine = 6-methoxymellein + S-adenosyl-L-homocysteine + H(+)"]],"b":[["shikimates_and_phenylpropanoids/6-hydroxymellein.yaml","6-hydroxymellein"]]},{"id":"CHEBI:18048","l":"DIMBOA","na":4,"nb":1,"a":[["EC%3A2.4.1.202","2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one 2-D- glucosyltransferase"],["EC%3A3.2.1.182","4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase"],["RHEA%3A33975","DIMBOA beta-D-glucoside + H2O = DIMBOA + D-glucose"],["RHEA%3A15541","DIMBOA + UDP-alpha-D-glucose = DIMBOA beta-D-glucoside + UDP + H(+)"]],"b":[["alkaloids/dimboa.yaml","DIMBOA"]]},{"id":"CHEBI:18227","l":"sterigmatocystin","na":4,"nb":1,"a":[["EC%3A2.1.1.109","demethylsterigmatocystin 6-O-methyltransferase"],["EC%3A2.1.1.110","sterigmatocystin 8-O-methyltransferase"],["RHEA%3A11504","6-demethylsterigmatocystin + S-adenosyl-L-methionine = sterigmatocystin + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A15561","sterigmatocystin + S-adenosyl-L-methionine = 8-O-methylsterigmatocystin + S-adenosyl-L-homocysteine + H(+)"]],"b":[["polyketides/sterigmatocystin.yaml","sterigmatocystin"]]},{"id":"CHEBI:2448","l":"actinorhodin","na":4,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.6","The Resistance-Nodulation-Cell Division (RND) Superfamily"],["proteintraitsmech%3ABIOLIP_ZCT","ZCT-binding site"]],"b":[["polyketides/actinorhodin.yaml","actinorhodin"]]},{"id":"CHEBI:4356","l":"desferrioxamine B","na":4,"nb":1,"a":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_4356","requires desferrioxamine B"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A1.B.14","The Outer Membrane Receptor (OMR) Family"],["proteintraitsmech%3ABIOLIP_KTY","KTY-binding site"]],"b":[["fatty_acids/desferrioxamine-b.yaml","desferrioxamine B"]]},{"id":"CHEBI:51460","l":"albaflavenone","na":4,"nb":1,"a":[["EC%3A1.14.15.39","epi-isozizaene 5-monooxygenase"],["RHEA%3A25988","(5R)-albaflavenol + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = albaflavenone + 2 oxidized [2Fe-2S]-[ferredoxin] + 2 H2O"],["RHEA%3A25980","(5S)-albaflavenol + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = albaflavenone + 2 oxidized [2Fe-2S]-[ferredoxin] + 2 H2O"],["RHEA%3A32439","(+)-epi-isozizaene + 4 reduced [2Fe-2S]-[ferredoxin] + 2 O2 + 4 H(+) = albaflavenone + 4 oxidized [2Fe-2S]-[ferredoxin] + 3 H2O"]],"b":[["terpenoids/albaflavenone.yaml","albaflavenone"]]},{"id":"CHEBI:63282","l":"pseudaminate","na":4,"nb":1,"a":[["EC%3A2.5.1.97","pseudaminic acid synthase"],["EC%3A2.7.7.81","pseudaminic acid cytidylyltransferase"],["RHEA%3A31631","2,4-diacetamido-2,4,6-trideoxy-beta-L-altrose + phosphoenolpyruvate + H2O = pseudaminate + phosphate"],["RHEA%3A32083","pseudaminate + CTP = CMP-pseudaminate + diphosphate"]],"b":[["carbohydrates/pseudaminate.yaml","pseudaminate"]]},{"id":"CHEBI:64258","l":"","na":4,"nb":1,"a":[["EC%3A1.14.13.154","erythromycin 12 hydroxylase"],["EC%3A2.1.1.254","erythromycin 3'-O-methyltransferase"],["RHEA%3A32647","erythromycin C + S-adenosyl-L-methionine = erythromycin A + S-adenosyl-L-homocysteine + H(+)"],["RHEA%3A32631","erythromycin D + NADPH + O2 + H(+) = erythromycin C + NADP(+) + H2O"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"CHEBI:79296","l":"indigoidine","na":4,"nb":1,"a":[["EC%3A4.3.3.9","indigoidine synthase"],["RHEA%3A81507","2 3-amino-1,5-dihydropyridine-2,6-dione + O2 = indigoidine + 2 H2O"],["RHEA%3A81499","2 FMN + 2 L-glutamine + 2 ATP + O2 = indigoidine + 2 FMNH2 + 2 AMP + 2 diphosphate + 2 H2O"],["TCDB%3A2.A.7","The Drug/Metabolite Transporter (DMT) Superfamily"]],"b":[["alkaloids/indigoidine.yaml","indigoidine"]]},{"id":"CHEBI:9555","l":"tioguanine","na":4,"nb":1,"a":[["EC%3A2.1.1.67","thiopurine S-methyltransferase"],["RHEA%3A56580","6-thioguanine + S-adenosyl-L-methionine = 6-methylthioguanine + S-adenosyl-L-homocysteine + H(+)"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A2.A.40","The Nucleobase/Ascorbate Transporter (NAT) or Nucleobase:Cation Symporter-2 (NCS2) Family"]],"b":[["alkaloids/tioguanine.yaml","tioguanine"]]},{"id":"DOI:10.1021/ja312503y","l":"","na":4,"nb":1,"a":[["RHEA%3A74587","(2E,6E)-farnesyl diphosphate = (+)-exo-beta-bergamotene + diphosphate"],["RHEA%3A74751","fumagillol + dodecapentaneoyl-[polyketide synthase] = prefumagillin + holo-[polyketide synthase]"],["RHEA%3A74727","holo-[polyketide synthase] + 5 malonyl-CoA + acetyl-CoA + 5 NADPH + 10 H(+) = dodecapentaneoyl-[polyketide synthase] + 5 CO2 + 5 NADP(+) + 6 CoA + 5 H2O"],["NCBIfam%3ANF025196","monooxygenase family protein"]],"b":[["polyketides/fumagillin.yaml","fumagillin"]]},{"id":"DOI:10.1128/JB.183.21.6454-6465.2001","l":"","na":4,"nb":1,"a":[["RHEA%3A49456","(2S)-2-amino-4-deoxychorismate + H2O = (5S,6S)-6-amino-5-hydroxycyclohexa-1,3-diene-1-carboxyate + pyruvate"],["RHEA%3A48976","5-methyl-phenazine-1-carboxylate + NADH + O2 + 2 H(+) = pyocyanin + CO2 + NAD(+) + H2O"],["RHEA%3A53868","phenazine-1-carboxylate + NADH + O2 + 2 H(+) = 1-hydroxyphenazine + CO2 + NAD(+) + H2O"],["NCBIfam%3ANF038138","phenazine biosynthesis FMN-dependent oxidase PhzG"]],"b":[["alkaloids/pyocyanine.yaml","pyocyanine"]]},{"id":"NCBITaxon:101028","l":"Fusarium pseudograminearum","na":1,"nb":4,"a":[["TED%3AAF-A0A7S8DXW2-F1-model_v4_TED02","TED novel fold AF-A0A7S8DXW2-F1-model_v4_TED02"]],"b":[["alkaloids/8-oxo-fusatin.yaml","8-oxo-fusatin"],["alkaloids/8-oxo-isopentenyladenine.yaml","8-oxo-isopentenyladenine"],["alkaloids/fusatin.yaml","fusatin"],["alkaloids/fusatinic-acid.yaml","fusatinic acid"]]},{"id":"NCBITaxon:101510","l":"Rhodococcus jostii RHA1","na":4,"nb":1,"a":[["Pfam%3APF05258","Dna[CI] antecedent, DciA"],["PROSITE%3APS00570","Bacterial ring hydroxylating dioxygenases alpha-subunit signature"],["MCSA%3A437","2,6-dioxo-6-phenylhexa-3-enoate hydrolase"],["TED%3AAF-Q0RZW9-F1-model_v4_TED03","TED highly-symmetric fold AF-Q0RZW9-F1-model_v4_TED03"]],"b":[["unclassified/rhodochelin.yaml","rhodochelin"]]},{"id":"NCBITaxon:1038928","l":"Streptomyces xinghaiensis","na":1,"nb":4,"a":[["TED%3AAF-A0A3R7FP99-F1-model_v4_TED01","TED novel fold AF-A0A3R7FP99-F1-model_v4_TED01"]],"b":[["alkaloids/dixiamycin-a.yaml","dixiamycin A"],["alkaloids/xiamycin-a.yaml","xiamycin A"],["fatty_acids/desferrioxamine-b.yaml","desferrioxamine B"],["polyketides/oligomycin.yaml","oligomycin"]]},{"id":"NCBITaxon:105351","l":"Aspergillus awamori","na":4,"nb":1,"a":[["PROSITE%3APS00820","Glucoamylase active site region signature"],["MCSA%3A827","fructan beta-fructosidase"],["MCSA%3A393","glucan 1,4-alpha-glucosidase"],["TED%3AAF-A0A401KM36-F1-model_v4_TED03","TED novel fold AF-A0A401KM36-F1-model_v4_TED03"]],"b":[["alkaloids/aspergillin-pz.yaml","aspergillin PZ"]]},{"id":"NCBITaxon:1311","l":"Streptococcus agalactiae","na":4,"nb":1,"a":[["Pfam%3APF19567","Capsular polysaccharide synthesis, CpsB/CapC"],["Pfam%3APF16828","GAG-binding domain on surface antigen"],["Pfam%3APF27244","GtfB middle domain"],["Pfam%3APF07373","CAMP factor (Cfa)"]],"b":[["carbohydrates/capsular-polysaccharide-3.yaml","capsular polysaccharide"]]},{"id":"NCBITaxon:1813822","l":"Xylariales sp. No.14919","na":4,"nb":1,"a":[["TED%3AAF-A0A1V1SW90-F1-model_v4_TED01","TED novel fold AF-A0A1V1SW90-F1-model_v4_TED01"],["TED%3AAF-A0A1V1T5K0-F1-model_v4_TED01","TED novel fold AF-A0A1V1T5K0-F1-model_v4_TED01"],["TED%3AAF-A0A1V1TFW0-F1-model_v4_TED03","TED novel fold AF-A0A1V1TFW0-F1-model_v4_TED03"],["TED%3AAF-A0A1V1THH5-F1-model_v4_TED03","TED novel fold AF-A0A1V1THH5-F1-model_v4_TED03"]],"b":[["polyketides/fr901512.yaml","FR901512"]]},{"id":"NCBITaxon:1944","l":"Streptomyces halstedii","na":1,"nb":4,"a":[["Pfam%3APF09277","Erythronolide synthase, docking"]],"b":[["alkaloids/rotihibin-a.yaml","rotihibin A"],["polyketides/halstoctacosanolide-a.yaml","halstoctacosanolide A"],["terpenoids/geosmin.yaml","(−)-geosmin"],["unclassified/vicenistatin.yaml","vicenistatin"]]},{"id":"NCBITaxon:1967","l":"Streptomyces kanamyceticus","na":1,"nb":4,"a":[["Pfam%3APF13579","Glycosyl transferase 4-like domain"]],"b":[["amino_acids_and_peptides/gausemycin-a.yaml","gausemycin A"],["amino_acids_and_peptides/gausemycin-b.yaml","gausemycin B"],["carbohydrates/2-deoxystreptamine.yaml","2-deoxystreptamine"],["carbohydrates/kanamycin-a.yaml","kanamycin A"]]},{"id":"NCBITaxon:2017","l":"Streptoalloteichus hindustanus","na":1,"nb":4,"a":[["Pfam%3APF19581","Glyoxalase superfamily protein"]],"b":[["amino_acids_and_peptides/tallysomycin-a.yaml","tallysomycin A"],["amino_acids_and_peptides/tallysomycin-b.yaml","tallysomycin B"],["carbohydrates/apramycin.yaml","apramycin"],["carbohydrates/tobramycin.yaml","tobramycin"]]},{"id":"NCBITaxon:2045","l":"Nocardioides simplex","na":4,"nb":1,"a":[["Pfam%3APF00775","Dioxygenase"],["Pfam%3APF04444","Catechol dioxygenase N terminus"],["PROSITE%3APS00083","Intradiol ring-cleavage dioxygenases signature"],["TED%3AAF-A0A4Y3NBY1-F1-model_v4_TED01","TED novel fold AF-A0A4Y3NBY1-F1-model_v4_TED01"]],"b":[["carbohydrates/2-amino-2-deoxyadenosine.yaml","2'-amino-2'-deoxyadenosine"]]},{"id":"NCBITaxon:267608","l":"Ralstonia nicotianae 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novel fold AF-A0A399NHQ8-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/michiganin-a.yaml","michiganin A"]]},{"id":"NCBITaxon:28450","l":"Burkholderia pseudomallei","na":4,"nb":1,"a":[["Pfam%3APF18664","CdiA C-terminal tRNase domain"],["Pfam%3APF12106","Colicin E5 ribonuclease domain"],["Pfam%3APF11480","Colicin-E5 Imm protein"],["Pfam%3APF13332","Hemagglutinin repeat"]],"b":[["polyketides/malleilactone.yaml","malleilactone"]]},{"id":"NCBITaxon:34073","l":"Variovorax paradoxus","na":1,"nb":4,"a":[["TED%3AAF-A0A679J1E9-F1-model_v4_TED01","TED novel fold AF-A0A679J1E9-F1-model_v4_TED01"]],"b":[["unclassified/vacidobactin-a.yaml","vacidobactin A"],["unclassified/vacidobactin-b.yaml","vacidobactin B"],["unclassified/variobactin-a.yaml","variobactin A"],["unclassified/variobactin-b.yaml","variobactin B"]]},{"id":"NCBITaxon:347834","l":"Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)","na":4,"nb":1,"a":[["Pfam%3APF02632","BioY family"],["proteintraitsmech%3AELIFE109154_VbsL","Vicibactin acyl-hydroxyornithine epimerase family"],["PROSITE%3APS01349","Nodulation protein nodA signature"],["MCSA%3A223","pyruvate carboxylase"]],"b":[["amino_acids_and_peptides/vicibactin.yaml","vicibactin"]]},{"id":"NCBITaxon:3988","l":"Ricinus communis","na":4,"nb":1,"a":[["Pfam%3APF10998","Protein of unknown function (DUF2838)"],["PROSITE%3APS00574","Fatty acid desaturases family 2 signature"],["PROSITE%3APS00275","Shiga/ricin ribosomal inactivating toxins active site signature"],["MCSA%3A136","acyl-[acyl-carrier-protein] desaturase"]],"b":[["terpenoids/casbene.yaml","casbene"]]},{"id":"NCBITaxon:4039","l":"Daucus carota","na":4,"nb":1,"a":[["PROSITE%3APS00451","Pathogenesis-related proteins Bet v I family signature"],["PROSITE%3APS00431","Small hydrophilic plant seed proteins signature"],["Pfam%3APF02987","Late embryogenesis abundant protein"],["MCSA%3A681","pectinesterase"]],"b":[["carbohydrates/adenine-arabinoside.yaml","adenine arabinoside"]]},{"id":"NCBITaxon:40602","l":"Claviceps fusiformis","na":1,"nb":4,"a":[["Pfam%3APF06766","Fungal hydrophobin"]],"b":[["alkaloids/agroclavine-i.yaml","Agroclavine I"],["alkaloids/elymoclavine.yaml","elymoclavine"],["alkaloids/ergocryptine.yaml","α-ergocryptine"],["alkaloids/ergotamine.yaml","ergotamine"]]},{"id":"NCBITaxon:43662","l":"Pseudoalteromonas piscicida","na":1,"nb":4,"a":[["Pfam%3APF08329","Chitinase A, N-terminal domain"]],"b":[["alkaloids/2-3-4-5-tetrabromopyrrole.yaml","2,3,4,5-tetrabromopyrrole"],["alkaloids/myxochelin-a.yaml","myxochelin A"],["alkaloids/myxochelin-b-2.yaml","myxochelin B"],["alkaloids/pseudochelin-a.yaml","pseudochelin A"]]},{"id":"NCBITaxon:497965","l":"","na":4,"nb":1,"a":[["TED%3AAF-E0UJA0-F1-model_v4_TED01","TED highly-symmetric fold AF-E0UJA0-F1-model_v4_TED01"],["TED%3AAF-E0U6M3-F1-model_v4_TED03","TED novel fold AF-E0U6M3-F1-model_v4_TED03"],["TED%3AAF-E0UE39-F1-model_v4_TED02","TED novel fold AF-E0UE39-F1-model_v4_TED02"],["TED%3AAF-E0UM93-F1-model_v4_TED01","TED novel fold AF-E0UM93-F1-model_v4_TED01"]],"b":[["fatty_acids/1-heptadecene.yaml","1-heptadecene"]]},{"id":"NCBITaxon:5067","l":"Aspergillus parasiticus","na":1,"nb":4,"a":[["IEDB%3A127597","epitope ASQNRPRDDVQ"]],"b":[["polyketides/aflatoxin-b2.yaml","aflatoxin B2"],["terpenoids/astellolide-a.yaml","astellolide A"],["unclassified/aflatoxin.yaml","aflatoxin"],["unclassified/aspergillic-acid.yaml","aspergillic acid"]]},{"id":"NCBITaxon:5083","l":"Penicillium canescens","na":1,"nb":4,"a":[["Pfam%3APF09206","Alpha-L-arabinofuranosidase B, catalytic"]],"b":[["alkaloids/agroclavine-i.yaml","Agroclavine I"],["unclassified/outovirin-a.yaml","outovirin A"],["unclassified/outovirin-c.yaml","outovirin C"],["unclassified/penitrem-a.yaml","penitrem A"]]},{"id":"NCBITaxon:512","l":"Alcaligenes sp","na":4,"nb":1,"a":[["Pfam%3APF26354","N,N-dimethylformamidase alpha subunit"],["Pfam%3APF20254","N,N-dimethylformamidase beta subunit-like, C-terminal"],["Pfam%3APF11606","Family 31 carbohydrate binding protein"],["PROSITE%3APS00570","Bacterial ring hydroxylating dioxygenases alpha-subunit signature"]],"b":[["polyketides/kalimantacin-a.yaml","kalimantacin A"]]},{"id":"NCBITaxon:5353","l":"Lentinula edodes","na":4,"nb":1,"a":[["Pfam%3APF21671","Protein CPL1-like"],["Pfam%3APF16850","Peptidase inhibitor I66"],["TED%3AAF-A0A1Q3EBL0-F1-model_v4_TED01","TED novel fold AF-A0A1Q3EBL0-F1-model_v4_TED01"],["TED%3AAF-A0A1Q3ENK4-F1-model_v4_TED01","TED novel fold AF-A0A1Q3ENK4-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/lentinulin-a.yaml","lentinulin A"]]},{"id":"NCBITaxon:5516","l":"Fusarium culmorum","na":1,"nb":4,"a":[["TED%3AAF-A0A2T4GUL3-F1-model_v4_TED01","TED novel fold AF-A0A2T4GUL3-F1-model_v4_TED01"]],"b":[["polyketides/zearalenone.yaml","zearalenone"],["terpenoids/15-acetyldeoxynivalenol.yaml","15-acetyldeoxynivalenol"],["terpenoids/culmorin.yaml","culmorin"],["terpenoids/nivalenol.yaml","nivalenol"]]},{"id":"NCBITaxon:655819","l":"Beauveria bassiana ARSEF 2860","na":1,"nb":4,"a":[["Pfam%3APF22354","Hydrophobin"]],"b":[["polyketides/oosporein.yaml","oosporein"],["unclassified/beauverolide-ba.yaml","beauverolide Ba"],["unclassified/beauverolide-ca.yaml","beauverolide Ca"],["unclassified/beauverolide-ka.yaml","beauverolide Ka"]]},{"id":"NCBITaxon:668","l":"Aliivibrio fischeri","na":4,"nb":1,"a":[["PROSITE%3APS00949","Autoinducer synthase family signature"],["PROSITE%3APS00494","Bacterial luciferase subunits signature"],["PROSITE%3APS00607","cAMP phosphodiesterases class-II signature"],["TED%3AAF-A0A844NWZ1-F1-model_v4_TED02","TED highly-symmetric fold AF-A0A844NWZ1-F1-model_v4_TED02"]],"b":[["unclassified/ape-vf.yaml","APE Vf"]]},{"id":"NCBITaxon:715","l":"Actinobacillus pleuropneumoniae","na":4,"nb":1,"a":[["Pfam%3APF26002","AprE-like, beta-barrel domain"],["Pfam%3APF02794","RTX toxin acyltransferase family"],["IEDB%3A124022","epitope DLYRMYSRY"],["PROSITE%3APS00543","HlyD family secretion proteins signature"]],"b":[["unclassified/capsular-polysaccharide.yaml","capsular polysaccharide"]]},{"id":"NCBITaxon:76728","l":"Streptomyces vitaminophilus","na":1,"nb":4,"a":[["TED%3AAF-A0A0T6LRN4-F1-model_v4_TED01","TED novel fold AF-A0A0T6LRN4-F1-model_v4_TED01"]],"b":[["alkaloids/pyrrolomycin-a.yaml","pyrrolomycin A"],["alkaloids/pyrrolomycin-b.yaml","pyrrolomycin B"],["alkaloids/pyrrolomycin-c.yaml","pyrrolomycin C"],["alkaloids/pyrrolomycin-d.yaml","pyrrolomycin D"]]},{"id":"NCBITaxon:85698","l":"","na":4,"nb":1,"a":[["Pfam%3APF25975","CzcB C-terminal circularly permuted SH3-like domain"],["Pfam%3APF17524","Anti-sigma factor CnrY"],["Pfam%3APF10778","Halocarboxylic acid dehydrogenase DehI"],["TED%3AAF-A0A1R1JVF9-F1-model_v4_TED03","TED highly-symmetric fold AF-A0A1R1JVF9-F1-model_v4_TED03"]],"b":[["amino_acids_and_peptides/alcaligin.yaml","alcaligin"]]},{"id":"NCBITaxon:933388","l":"Penicillium oxalicum (strain 114-2 / CGMCC 5302)","na":4,"nb":1,"a":[["Pfam%3APF27751","ATEG_07667 C-terminal domain"],["Pfam%3APF11402","Antifungal protein"],["Pfam%3APF12311","Protein of unknown function (DUF3632)"],["TED%3AAF-S8ATN5-F1-model_v4_TED01","TED highly-symmetric fold AF-S8ATN5-F1-model_v4_TED01"]],"b":[["unclassified/atpenin-b.yaml","atpenin B"]]},{"id":"NCBITaxon:93625","l":"Psilocybe cyanescens","na":4,"nb":1,"a":[["Pfam%3APF02958","Ecdysteroid kinase-like family"],["TED%3AAF-A0A409XLW7-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A409XLW7-F1-model_v4_TED01"],["TED%3AAF-A0A409XPY8-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A409XPY8-F1-model_v4_TED01"],["TED%3AAF-A0A409XED8-F1-model_v4_TED01","TED novel fold AF-A0A409XED8-F1-model_v4_TED01"]],"b":[["alkaloids/psilocybin.yaml","psilocybin"]]},{"id":"UniProt:P02701","l":"","na":4,"nb":1,"a":[["Pfam%3APF01382","Avidin family"],["PROSITE%3APS00577","Avidin-like domain signature"],["proteintraitsmech%3ABIOLIP_B1R","B1R-binding site"],["proteintraitsmech%3ABIOLIP_BTN","BTN-binding site"]],"b":[["alkaloids/biotin.yaml","biotin"]]},{"id":"UniProt:P62593","l":"","na":4,"nb":1,"a":[["proteintraitsmech%3AMEROPS_CLEAVAGE_M50_004","RseP peptidase cleavage specificity"],["Pfam%3APF13354","Beta-lactamase enzyme family"],["PROSITE%3APS00146","Beta-lactamase class-A active site"],["MCSA%3A2","beta-lactamase (Class A)"]],"b":[["amino_acids_and_peptides/clavulanic-acid-2.yaml","clavulanic acid"]]},{"id":"UniProt:Q00441","l":"","na":4,"nb":1,"a":[["EC%3A1.14.15.35","6-deoxyerythronolide B hydroxylase"],["RHEA%3A40299","6-deoxyerythronolide B + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = erythronolide B + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O"],["MCSA%3A694","6-deoxyerythronolide B hydroxylase"],["proteintraitsmech%3ABIOLIP_9AP","9AP-binding site"]],"b":[["polyketides/erythromycin-a.yaml","erythromycin A"]]},{"id":"UniProt:Q8TDV0","l":"","na":4,"nb":1,"a":[["ComplexPortal%3ACPX-16132","-"],["ComplexPortal%3ACPX-17565","-"],["ComplexPortal%3ACPX-24374","-"],["CDD%3Acd15002","7tmA_GPR151"]],"b":[["carbohydrates/tobramycin.yaml","tobramycin"]]},{"id":"UniProt:Q9Y243","l":"","na":4,"nb":1,"a":[["ComplexPortal%3ACPX-22352","-"],["ComplexPortal%3ACPX-24286","-"],["CDD%3Acd05593","STKc_PKB_gamma"],["InterPro%3AIPR034675","Protein kinase B gamma, catalytic domain"]],"b":[["alkaloids/staurosporine-2.yaml","staurosporine"]]},{"id":"CHEBI:131914","l":"violacein","na":3,"nb":1,"a":[["RHEA%3A49720","protoviolaceinate + NADH + 2 O2 + 2 H(+) = violacein + CO2 + NAD(+) + 2 H2O"],["RHEA%3A49728","protoviolaceinate + NADPH + 2 O2 + 2 H(+) = violacein + CO2 + NADP(+) + 2 H2O"],["RHEA%3A49732","violaceinate + O2 + H(+) = violacein + CO2 + H2O"]],"b":[["alkaloids/violacein.yaml","violacein"]]},{"id":"CHEBI:133763","l":"YWA1","na":3,"nb":1,"a":[["RHEA%3A62652","6 malonyl-CoA + acetyl-CoA + 6 H(+) = naphtopyrone YWA1 + 6 CO2 + 7 CoA + H2O"],["RHEA%3A62700","naphtopyrone YWA1 + H2O = naphthalene-1,3,6,8-tetrol + acetoacetate + H(+)"],["RHEA%3A62680","naphtopyrone YWA1 = norrubrofusarin + H2O + H(+)"]],"b":[["polyketides/ywa1.yaml","YWA1"]]},{"id":"CHEBI:138046","l":"sesterfisherol","na":3,"nb":1,"a":[["EC%3A4.2.3.176","sesterfisherol synthase"],["RHEA%3A54068","(2E,6E,10E,14E)-geranylfarnesyl diphosphate + H2O = sesterfisherol + diphosphate"],["RHEA%3A78407","sesterfisherol + 3 reduced [NADPH--hemoprotein reductase] + 3 O2 = sesterfisherate + 3 oxidized [NADPH--hemoprotein reductase] + 4 H2O + 4 H(+)"]],"b":[["terpenoids/sesterfisherol.yaml","sesterfisherol"]]},{"id":"CHEBI:18393","l":"naphthalene-1,3,8-triol","na":3,"nb":1,"a":[["EC%3A4.2.1.94","scytalone dehydratase"],["RHEA%3A24396","scytalone = 1,3,8-trihydroxynaphthalene + H2O"],["MCSA%3A910","scytalone dehydratase"]],"b":[["polyketides/naphthalene-1-3-8-triol.yaml","naphthalene-1,3,8-triol"]]},{"id":"CHEBI:28915","l":"fosfomycin","na":3,"nb":1,"a":[["TCDB%3A2.A.66","The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily"],["TCDB%3A1.B.5","The Pseudomonas OprP Porin (POP) Family"],["proteintraitsmech%3ABIOLIP_FCN","FCN-binding site"]],"b":[["unclassified/fosfomycin.yaml","fosfomycin"]]},{"id":"CHEBI:29472","l":"2-heptyl-3-hydroxy-4-quinolone","na":3,"nb":1,"a":[["EC%3A1.14.13.182","2-heptyl-3-hydroxy-4(1H)-quinolone synthase"],["RHEA%3A60352","2-heptyl-3-hydroxy-4(1H)-quinolone + O2 = N-octanoylanthranilate + CO + H(+)"],["RHEA%3A37871","2-heptyl-4(1H)-quinolone + NADH + O2 + H(+) = 2-heptyl-3-hydroxy-4(1H)-quinolone + NAD(+) + H2O"]],"b":[["alkaloids/2-heptyl-3-hydroxy-4-quinolone.yaml","2-heptyl-3-hydroxy-4-quinolone"]]},{"id":"CHEBI:3139","l":"bleomycin A2","na":3,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"],["TCDB%3A9.A.18","The Peptide Uptake Permease (PUP) Family"]],"b":[["amino_acids_and_peptides/bleomycin-a2.yaml","bleomycin A2"]]},{"id":"CHEBI:31432","l":"corynebactin","na":3,"nb":1,"a":[["RHEA%3A33811","3 2,3-dihydroxybenzoate + 3 L-threonine + 3 glycine + 6 ATP = corynebactin + 6 AMP + 6 diphosphate + 3 H2O + 3 H(+)"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"]],"b":[["unclassified/corynebactin.yaml","corynebactin"]]},{"id":"CHEBI:31550","l":"epothilone B","na":3,"nb":1,"a":[["RHEA%3A47808","epothilone D + 2 reduced [2Fe-2S]-[ferredoxin] + O2 + 2 H(+) = epothilone B + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O"],["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) Superfamily"],["proteintraitsmech%3ABIOLIP_EPB","EPB-binding site"]],"b":[["unclassified/epothilone-b.yaml","epothilone B"]]},{"id":"CHEBI:40968","l":"astaxanthin","na":3,"nb":1,"a":[["EC%3A1.14.99.64","zeaxanthin 4-ketolase"],["RHEA%3A56772","all-trans-adonixanthin + 2 AH2 + 2 O2 = all-trans-(3S,3'S)-astaxanthin + 2 A + 3 H2O"],["proteintraitsmech%3ABIOLIP_AXT","AXT-binding site"]],"b":[["terpenoids/astaxanthin.yaml","astaxanthin"]]},{"id":"CHEBI:46702","l":"(−)-geosmin","na":3,"nb":1,"a":[["EC%3A4.1.99.16","geosmin synthase"],["RHEA%3A30371","(1E,4S,5E,7R)-germacra-1(10),5-dien-11-ol + H2O = (-)-geosmin + acetone"],["RHEA%3A30455","(1S,4aS)-1,4a-dimethyl-1,2,3,4,4a,5,6,8a-octahydronaphthalene + H2O = (-)-geosmin"]],"b":[["terpenoids/geosmin.yaml","(−)-geosmin"]]},{"id":"CHEBI:48741","l":"β-phellandrene","na":3,"nb":1,"a":[["EC%3A4.2.3.51","beta-phellandrene synthase (neryl-diphosphate-cyclizing)"],["RHEA%3A25504","(2E)-geranyl diphosphate = beta-phellandrene + diphosphate"],["RHEA%3A27830","neryl diphosphate = beta-phellandrene + diphosphate"]],"b":[["terpenoids/phellandrene.yaml","β-phellandrene"]]},{"id":"CHEBI:50432","l":"putrebactin","na":3,"nb":1,"a":[["EC%3A6.3.2.63","putrebactin synthase"],["RHEA%3A79279","2 N-(3-carboxypropanoyl)-N-hydroxyputrescine + 2 ATP = putrebactin + 2 AMP + 2 diphosphate + 2 H(+)"],["RHEA%3A79287","pre-putrebactin + ATP = putrebactin + AMP + diphosphate + H(+)"]],"b":[["amino_acids_and_peptides/putrebactin.yaml","putrebactin"]]},{"id":"CHEBI:63468","l":"tirucalla-7,24-dien-3β-ol","na":3,"nb":1,"a":[["EC%3A5.4.99.56","tirucalladienol synthase"],["RHEA%3A31887","(S)-2,3-epoxysqualene = tirucalla-7,24-dien-3beta-ol"],["RHEA%3A80279","tirucalla-7,24-dien-3beta-ol + 2 reduced [NADPH--hemoprotein reductase] + 2 O2 = dihydroniloticin + 2 oxidized [NADPH--hemoprotein reductase] + 2 H2O + 2 H(+)"]],"b":[["terpenoids/tirucalla-7-24-dien-3-ol.yaml","tirucalla-7,24-dien-3β-ol"]]},{"id":"CHEBI:6472","l":"lincomycin","na":3,"nb":1,"a":[["TCDB%3A3.A.1","The ATP-binding Cassette (ABC) 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AF-A0A5E4FP94-F1-model_v4_TED01"]],"b":[["shikimates_and_phenylpropanoids/4-hydroxy-3-prenylbenzoic-acid.yaml","4-hydroxy-3-prenylbenzoic acid"]]},{"id":"NCBITaxon:376686","l":"","na":3,"nb":1,"a":[["Pfam%3APF17957","Bacterial Ig domain"],["Pfam%3APF24850","Bacillithiol biosynthesis BshC, C-terminal coiled-coil domain"],["Pfam%3APF14109","GldH lipoprotein"]],"b":[["polyketides/flexirubin.yaml","flexirubin"]]},{"id":"NCBITaxon:381666","l":"Cupriavidus necator H16","na":3,"nb":1,"a":[["Pfam%3APF13473","Cupredoxin-like domain"],["Pfam%3APF10605","3HB-oligomer hydrolase (3HBOH)"],["Pfam%3APF21783","YNCE-like beta-propeller"]],"b":[["amino_acids_and_peptides/cupriachelin.yaml","cupriachelin"]]},{"id":"NCBITaxon:393595","l":"Alcanivorax borkumensis SK2","na":1,"nb":3,"a":[["TED%3AAF-Q0VNH7-F1-model_v4_TED01","TED highly-symmetric fold AF-Q0VNH7-F1-model_v4_TED01"]],"b":[["amino_acids_and_peptides/amphibactin-e.yaml","amphibactin E"],["amino_acids_and_peptides/amphibactin-h.yaml","amphibactin 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AF-A0A174W9M0-F1-model_v4_TED01"],["TED%3AAF-A0A679HCU6-F1-model_v4_TED01","TED highly-symmetric fold AF-A0A679HCU6-F1-model_v4_TED01"],["TED%3AAF-A0A139L295-F1-model_v4_TED04","TED novel fold AF-A0A139L295-F1-model_v4_TED04"],["TED%3AAF-A0A174QBB7-F1-model_v4_TED02","TED novel fold AF-A0A174QBB7-F1-model_v4_TED02"],["TED%3AAF-A0A679H9T4-F1-model_v4_TED03","TED novel fold AF-A0A679H9T4-F1-model_v4_TED03"]]},{"id":"GO:0000917","l":"division septum assembly","na":2,"nb":8,"a":[["morphology/sarcina_arrangement.html","sarcina arrangement"],["morphology/tetrad_arrangement.html","tetrad arrangement"]],"b":[["ComplexPortal%3ACPX-1936","Divisome complex"],["GO%3A0000917","division septum assembly"],["GO%3A0140278","mitotic division septum assembly"],["NCBIfam%3ATIGR02205","cell division protein ZipA"],["NCBIfam%3ATIGR00172","Maf family nucleotide pyrophosphatase"],["PANTHER%3APTHR36419","ARRESTIN FAMILY PROTEIN 1"]]},{"id":"GO:0061579","l":"N-acyl homoserine lactone synthase 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dioxygenase"]]},{"id":"GO:0016791","l":"phosphatase activity","na":1,"nb":171,"a":[["physiology/naphthol_as_bi_phosphohydrolase_activity.html","naphthol-AS-BI-phosphohydrolase activity"]],"b":[["ComplexPortal%3ACPX-120","Prostatic acid phosphatase complex"],["ComplexPortal%3ACPX-121","Prostatic acid phosphatase complex"],["GO%3A0033885","10-hydroxy-9-(phosphonooxy)octadecanoate phosphatase activity"],["GO%3A0047538","2-carboxy-D-arabinitol-1-phosphatase activity"],["GO%3A0043716","2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity"],["GO%3A0050532","2-phosphosulfolactate phosphatase activity"]]},{"id":"NCBITaxon:99287","l":"Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)","na":1,"nb":167,"a":[["metabolism/tetrathionate_respiration.html","tetrathionate respiration"]],"b":[["Pfam%3APF16031","TonB polyproline region"],["Pfam%3APF13521","AAA domain"],["Pfam%3APF26341","tRNA 2-selenouridine synthase AAA domain"],["Pfam%3APF13427","Aminoglycoside adenylyltransferase, C-terminal domain"],["Pfam%3APF09317","Acyl-CoA dehydrogenase, C-terminal, bacterial type"],["Pfam%3APF06315","Isocitrate dehydrogenase kinase/phosphatase (AceK) kinase domain"]]},{"id":"GO:0015979","l":"photosynthesis","na":1,"nb":146,"a":[["metabolism/photosynthesis.html","photosynthesis"]],"b":[["GO%3A0015979","photosynthesis"],["NCBIfam%3ATIGR01337","allophycocyanin subunit beta"],["NCBIfam%3ATIGR03056","alpha/beta fold hydrolase BchO"],["NCBIfam%3ANF013497","Apocytochrome F, C-terminal"],["NCBIfam%3ANF014391","Bacteriochlorophyll A protein"],["NCBIfam%3ANF058502","C-phycocyanin alpha-cysteine-84 phycocyanobilin lyase subunit CpcE"]]},{"id":"NCBITaxon:71421","l":"Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)","na":1,"nb":133,"a":[["genomics/restriction_modification_system.html","restriction-modification system"]],"b":[["Pfam%3APF13521","AAA domain"],["Pfam%3APF13654","LonB-like, AAA domain"],["Pfam%3APF16326","ABC transporter C-terminal domain"],["Pfam%3APF13710","ACT domain"],["Pfam%3APF12633","Adenylate cyclase NT domain"],["Pfam%3APF26690","Adenylate cyclase, class-I, third domain"]]},{"id":"GO:0006457","l":"protein folding","na":1,"nb":129,"a":[["environment/temperature_range_high.html","temperature range high"]],"b":[["ComplexPortal%3ACPX-2156","Chaperonin-containing T-complex"],["ComplexPortal%3ACPX-2772","Chaperonin-containing T-complex"],["ComplexPortal%3ACPX-6030","Chaperonin-containing T-complex"],["ComplexPortal%3ACPX-2113","GroEL-GroES complex"],["ComplexPortal%3ACPX-1671","Prefoldin co-chaperone complex"],["ComplexPortal%3ACPX-2389","Prefoldin co-chaperone complex"]]},{"id":"GO:0030154","l":"cell differentiation","na":1,"nb":108,"a":[["morphology/heterocyst.html","heterocyst"]],"b":[["GO%3A0048657","anther wall tapetum cell differentiation"],["GO%3A0009557","antipodal cell differentiation"],["GO%3A1903498","bundle sheath cell differentiation"],["GO%3A0035051","cardiocyte differentiation"],["GO%3A0030154","cell differentiation"],["GO%3A0021533","cell differentiation in hindbrain"]]},{"id":"CHEBI:15343","l":"acetaldehyde","na":1,"nb":88,"a":[["metabolism/ethanol_fermentation.html","ethanol fermentation"]],"b":[["EC%3A1.1.1.1","alcohol dehydrogenase"],["EC%3A1.1.5.5","alcohol dehydrogenase (quinone)"],["EC%3A1.1.99.36","alcohol dehydrogenase (nicotinoprotein)"],["EC%3A1.13.11.88","isoeugenol monooxygenase"],["EC%3A1.13.12.16","nitronate monooxygenase"],["EC%3A1.2.1.10","acetaldehyde dehydrogenase (acetylating)"]]},{"id":"GO:0009307","l":"DNA restriction-modification system","na":1,"nb":83,"a":[["genomics/restriction_modification_system.html","restriction-modification system"]],"b":[["ComplexPortal%3ACPX-5285","McrBC 5-methylcytosine-specific restriction endonuclease complex"],["ComplexPortal%3ACPX-5628","Type I restriction-modification EcoKI complex"],["GO%3A0009307","DNA restriction-modification system"],["NCBIfam%3ANF007277","5-methylcytosine-specific restriction endonuclease system specificity protein McrC"],["NCBIfam%3ATIGR02986","Alw26I/Eco31I/Esp3I family type II restriction endonuclease"],["NCBIfam%3ANF020756","AvaI/BsoBI family type II restriction endonuclease"]]},{"id":"CHEBI:15354","l":"choline","na":1,"nb":78,"a":[["environment/euryhaline.html","euryhaline"]],"b":[["EC%3A1.1.3.17","choline oxidase"],["EC%3A1.1.99.1","choline dehydrogenase"],["EC%3A1.14.15.7","choline monooxygenase"],["EC%3A2.3.1.6","choline O-acetyltransferase"],["EC%3A2.3.1.91","sinapoylglucose--choline O-sinapoyltransferase"],["EC%3A2.7.1.32","choline kinase"]]},{"id":"CHEBI:29806","l":"fumarate(2-)","na":1,"nb":76,"a":[["metabolism/propionic_acid_fermentation.html","propionic acid fermentation"]],"b":[["EC%3A1.3.1.6","fumarate reductase (NADH)"],["EC%3A1.3.2.4","fumarate reductase (cytochrome)"],["EC%3A1.3.4.1","fumarate reductase (CoM/CoB)"],["EC%3A1.3.5.1","succinate dehydrogenase"],["EC%3A1.3.98.1","dihydroorotate oxidase (fumarate)"],["EC%3A3.7.1.14","2-hydroxy-6-oxonona-2,4-dienedioate hydrolase"]]},{"id":"GO:0004803","l":"transposase activity","na":1,"nb":73,"a":[["genomics/transposable_element.html","transposable element"]],"b":[["GO%3A0004803","transposase activity"],["NCBIfam%3ANF015365","IS1 family transposase"],["NCBIfam%3ANF033558","IS1 family transposase"],["NCBIfam%3ANF033542","IS110 family RNA-guided transposase"],["NCBIfam%3ANF033551","IS1182 family transposase"],["NCBIfam%3ANF033544","IS1249 family transposase"]]},{"id":"GO:0006413","l":"translational initiation","na":1,"nb":67,"a":[["genomics/codon_usage_bias.html","codon usage bias"]],"b":[["ComplexPortal%3ACPX-427","Eukaryotic translation initiation factor 2 complex"],["ComplexPortal%3ACPX-1831","Eukaryotic translation initiation factor 3 core complex"],["ComplexPortal%3ACPX-3482","Eukaryotic translation initiation factor 4E-Mxt complex"],["ComplexPortal%3ACPX-2666","Eukaryotic translation initiation factor 4F, EIF4A1 and EIF4G1 variant"],["ComplexPortal%3ACPX-5863","Eukaryotic translation initiation factor 4F, EIF4A1 and EIF4G1 variant"],["ComplexPortal%3ACPX-5635","Eukaryotic translation initiation factor 4F, EIF4A1 and EIF4G3 variant"]]},{"id":"GO:0006950","l":"response to stress","na":1,"nb":67,"a":[["physiology/stress_response.html","stress response"]],"b":[["GO%3A0033554","cellular response to stress"],["GO%3A0006952","defense response"],["GO%3A0033555","multicellular organismal response to stress"],["GO%3A0003299","muscle hypertrophy in response to stress"],["GO%3A0009271","phage shock"],["GO%3A0034059","response to anoxia"]]},{"id":"GO:0031012","l":"extracellular matrix","na":1,"nb":64,"a":[["ecology/biofilm_formation.html","biofilm formation"]],"b":[["ComplexPortal%3ACPX-461","155 kDa platelet multimerin complex"],["ComplexPortal%3ACPX-960","Collagen type II trimer"],["ComplexPortal%3ACPX-1749","Collagen type X trimer"],["ComplexPortal%3ACPX-2971","Collagen type X trimer"],["ComplexPortal%3ACPX-1750","Collagen type XI trimer variant 1"],["ComplexPortal%3ACPX-2975","Collagen type XI trimer variant 1"]]},{"id":"GO:0006289","l":"nucleotide-excision repair","na":1,"nb":60,"a":[["environment/uv_radiation_tolerant.html","UV radiation tolerant"]],"b":[["ComplexPortal%3ACPX-2757","CRL4-ERCC8 E3 ubiquitin ligase complex, CUL4A variant"],["ComplexPortal%3ACPX-2758","CRL4-ERCC8 E3 ubiquitin ligase complex, CUL4B variant"],["ComplexPortal%3ACPX-1837","CUL3-HRT1-ELC1-ELA1 ubiquitin ligase complex"],["ComplexPortal%3ACPX-478","ERCC1-XPF endonuclease complex"],["ComplexPortal%3ACPX-491","Ercc1-Xpf endonuclease complex"],["ComplexPortal%3ACPX-1659","General transcription factor TFIIH complex"]]},{"id":"InterPro:IPR000792","l":"Transcription regulator LuxR-like, C-terminal","na":1,"nb":59,"a":[["physiology/quorum_sensing.html","quorum sensing"]],"b":[["GO%3A0071111","cyclic-guanylate-specific phosphodiesterase activity"],["GO%3A0048031","trisaccharide 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complex"],["ComplexPortal%3ACPX-8806","20S proteasome complex"],["ComplexPortal%3ACPX-4862","Alkyl hydroperoxide reductase complex"],["ComplexPortal%3ACPX-8842","PA28-alphabeta double-capped 20S proteasome complex"],["ComplexPortal%3ACPX-9002","PA28-alphabeta single-capped 20S proteasome complex"]]},{"id":"CHEBI:16947","l":"citrate(3-)","na":1,"nb":49,"a":[["metabolism/reductive_tca_cycle.html","reductive tricarboxylic acid cycle"]],"b":[["EC%3A2.3.3.1","citrate (Si)-synthase"],["EC%3A2.3.3.16","citrate synthase (unknown stereospecificity)"],["EC%3A2.3.3.3","citrate (Re)-synthase"],["EC%3A2.3.3.8","ATP citrate synthase"],["EC%3A2.8.3.10","citrate CoA-transferase"],["EC%3A4.1.3.6","citrate (pro-3S)-lyase"]]},{"id":"CHEBI:16199","l":"urea","na":1,"nb":48,"a":[["physiology/urease_activity.html","urease activity"]],"b":[["EC%3A3.5.1.5","urease"],["EC%3A3.5.1.95","N-malonylurea hydrolase"],["EC%3A3.5.3.1","arginase"],["EC%3A3.5.3.10","D-arginase"],["EC%3A3.5.3.11","agmatinase"],["EC%3A3.5.3.14","amidinoaspartase"]]},{"id":"NCBITaxon:93061","l":"Staphylococcus aureus (strain NCTC 8325 / PS 47)","na":1,"nb":47,"a":[["physiology/catalase_activity.html","catalase activity"]],"b":[["IDPO%3A0000033","flexible linker"],["Pfam%3APF03373","Octapeptide repeat"],["Pfam%3APF07694","5TMR of 5TMR-LYT"],["Pfam%3APF01757","Acyltransferase domain"],["Pfam%3APF18719","ArlS sensor domain"],["Pfam%3APF02216","B domain"]]},{"id":"CHEBI:22563","l":"","na":1,"nb":46,"a":[["environment/euryhaline.html","euryhaline"]],"b":[["TCDB%3A1.C.55","The Agrobacterial VirE2 Target Host Cell Membrane Anion Channel (VirE2) Family"],["TCDB%3A1.A.46","The Anion Channel-forming Bestrophin (Bestrophin) Family"],["TCDB%3A1.A.48","The Anion Channel Tweety (Tweety) Family"],["TCDB%3A2.A.31","The Anion Exchanger (AE) Family"],["TCDB%3A2.A.85","The Aromatic Acid Exporter (ArAE) Family"],["TCDB%3A2.A.45","The Arsenite-Antimonite (ArsB) Efflux Family"]]},{"id":"GO:0006313","l":"DNA transposition","na":1,"nb":46,"a":[["genomics/transposable_element.html","transposable element"]],"b":[["GO%3A0006313","DNA transposition"],["GO%3A0098038","non-replicative DNA transposition"],["GO%3A0098039","replicative DNA transposition"],["NCBIfam%3ANF015365","IS1 family transposase"],["NCBIfam%3ANF038385","IS66-like element accessory protein TnpA"],["NCBIfam%3ANF040815","site-specific tyrosine recombinase/integron integrase"]]},{"id":"GO:0042254","l":"ribosome biogenesis","na":1,"nb":44,"a":[["genomics/rrna_operon_copy_number.html","rRNA operon copy number"]],"b":[["ComplexPortal%3ACPX-8940","Ribosome biogenesis complex"],["GO%3A0042254","ribosome biogenesis"],["NCBIfam%3ANF012679","50S ribosomal protein L10"],["NCBIfam%3ANF016308","Gar1/Naf1 RNA binding region"],["NCBIfam%3ANF016057","nucleolar RNA-binding Nop10p family protein"],["NCBIfam%3ATIGR01575","ribosomal protein S18-alanine N-acetyltransferase"]]},{"id":"CHEBI:16480","l":"nitric oxide","na":1,"nb":43,"a":[["ecology/biofilm_formation.html","biofilm formation"]],"b":[["EC%3A1.14.12.17","nitric oxide dioxygenase"],["EC%3A1.14.13.39","nitric-oxide synthase (NADPH)"],["EC%3A1.14.14.47","nitric-oxide synthase (flavodoxin)"],["EC%3A1.14.15.41","L-tryptophan 4-nitrase"],["EC%3A1.14.15.42","L-tyrosine 3-nitrase"],["EC%3A1.7.1.14","nitric oxide reductase [NAD(P)(+), nitrous oxide-forming]"]]},{"id":"GO:0045271","l":"respiratory chain complex I","na":1,"nb":43,"a":[["metabolism/oxidative_phosphorylation.html","Oxidative phosphorylation"]],"b":[["ComplexPortal%3ACPX-266","Mitochondrial respiratory chain complex I"],["ComplexPortal%3ACPX-577","Mitochondrial respiratory chain complex I"],["ComplexPortal%3ACPX-8628","Mitochondrial respiratory chain complex I"],["ComplexPortal%3ACPX-8638","Mitochondrial respiratory chain complex I, testis-specific variant"],["ComplexPortal%3ACPX-243","Respiratory chain complex I"],["GO%3A0045271","respiratory chain complex I"]]},{"id":"CHEBI:29036","l":"copper(2+)","na":1,"nb":40,"a":[["environment/copper_tolerant.html","copper tolerant"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_29036","requires copper(2+)"],["EC%3A1.1.9.1","alcohol dehydrogenase (azurin)"],["EC%3A1.16.3.4","cuproxidase"],["EC%3A1.17.9.1","4-methylphenol dehydrogenase (hydroxylating)"],["EC%3A1.17.9.2","(+)-pinoresinol hydroxylase"],["EC%3A1.20.9.1","arsenate reductase (azurin)"]]},{"id":"NCBITaxon:243274","l":"Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)","na":1,"nb":39,"a":[["metabolism/fermentative_hydrogen_production.html","fermentative hydrogen production"]],"b":[["Pfam%3APF02829","3H domain"],["Pfam%3APF13175","AAA ATPase domain"],["Pfam%3APF01958","Aspartate dehydrogenase, C-terminal"],["Pfam%3APF05448","Acetyl xylan esterase (AXE1)"],["Pfam%3APF04509","CheC-like family"],["Pfam%3APF13690","Chemotaxis phosphatase CheX"]]},{"id":"DOI:10.15252/embj.201489455","l":"","na":1,"nb":38,"a":[["genomics/brex_system.html","BREX system"]],"b":[["NCBIfam%3ANF033452","BREX-1 system adenine-specific DNA-methyltransferase PglX"],["NCBIfam%3ATIGR02687","BREX-1 system phosphatase PglZ type A"],["NCBIfam%3ANF033450","BREX-1 system phosphatase PglZ type B"],["NCBIfam%3ANF033451","BREX-2 system adenine-specific DNA-methyltransferase PglX"],["NCBIfam%3ANF033446","BREX-2 system phosphatase PglZ"],["NCBIfam%3ANF033449","BREX-3 system phosphatase PglZ"]]},{"id":"DOI:10.1126/science.aar4120","l":"","na":1,"nb":37,"a":[["genomics/phage_defense_system.html","phage defense system"]],"b":[["NCBIfam%3ANF041622","anti-phage protein KwaA"],["NCBIfam%3ANF041623","anti-phage protein KwaB"],["NCBIfam%3ANF033914","anti-phage ZorAB system protein ZorA"],["NCBIfam%3ANF033915","anti-phage ZorAB system protein ZorA"],["NCBIfam%3ANF033916","anti-phage ZorAB system protein ZorA"],["NCBIfam%3ANF033917","anti-phage ZorAB system protein ZorA"]]},{"id":"CHEBI:17272","l":"propionate","na":1,"nb":34,"a":[["metabolism/propionic_acid_fermentation.html","propionic acid fermentation"]],"b":[["EC%3A1.3.1.125","acrylate reductase"],["EC%3A2.7.2.15","propionate kinase"],["EC%3A2.8.3.1","propionate CoA-transferase"],["EC%3A2.8.3.27","propanoyl-CoA:succinate CoA transferase"],["EC%3A4.1.3.32","2,3-dimethylmalate lyase"],["EC%3A6.2.1.13","acetate--CoA ligase (ADP-forming)"]]},{"id":"GO:0003674","l":"molecular_function","na":1,"nb":34,"a":[["upper/biological_process.html","biological process"]],"b":[["GO%3A0016209","antioxidant activity"],["GO%3A0140657","ATP-dependent activity"],["GO%3A0005488","binding"],["GO%3A0038024","cargo receptor activity"],["GO%3A0003824","catalytic activity"],["GO%3A0003774","cytoskeletal motor activity"]]},{"id":"CHEBI:17968","l":"butyrate","na":1,"nb":33,"a":[["ecology/gut_associated.html","gut-associated"]],"b":[["EC%3A1.3.1.31","2-enoate reductase"],["EC%3A2.3.1.315","succinyl-CoA:cyclohexane-1-carboxylate CoA transferase"],["EC%3A2.7.2.7","butyrate kinase"],["EC%3A2.8.3.9","butyrate--acetoacetate CoA-transferase"],["EC%3A3.1.1.51","phorbol-diester hydrolase"],["EC%3A3.7.1.7","beta-diketone hydrolase"]]},{"id":"GO:0009522","l":"photosystem I","na":1,"nb":33,"a":[["metabolism/oxygenic_photosynthesis.html","oxygenic photosynthesis"]],"b":[["GO%3A0030093","chloroplast photosystem I"],["GO%3A0009522","photosystem I"],["GO%3A0030094","plasma membrane-derived photosystem I"],["NCBIfam%3ANF014449","photosystem I assembly protein Ycf4"],["NCBIfam%3ATIGR01336","photosystem I core protein PsaB"],["NCBIfam%3ANF014578","photosystem I reaction center subunit II"]]},{"id":"CHEBI:29748","l":"","na":1,"nb":30,"a":[["morphology/green_pigmented.html","green pigmented"]],"b":[["EC%3A2.6.1.123","4-amino-4-deoxychorismate synthase (2-amino-4-deoxychorismate-forming)"],["EC%3A2.6.1.85","aminodeoxychorismate synthase"],["EC%3A2.6.1.86","2-amino-4-deoxychorismate synthase"],["EC%3A3.3.2.13","chorismatase"],["EC%3A4.1.3.27","anthranilate synthase"],["EC%3A4.1.3.40","chorismate lyase"]]},{"id":"CHEBI:24636","l":"","na":1,"nb":28,"a":[["metabolism/oxidative_phosphorylation.html","Oxidative phosphorylation"]],"b":[["TCDB%3A3.A.4","The Arsenite-Antimonite (ArsAB) Efflux Family"],["TCDB%3A2.A.61","The C4-dicarboxylate Uptake C (DcuC) Family"],["TCDB%3A2.A.106","The Ca2+:H+ Antiporter-2 (CaCA2) Family"],["TCDB%3A1.A.110","The Channel-forming Otopetrin (OTOP) Family"],["TCDB%3A9.A.14","The G-protein-coupled receptor (GPCR) Family"],["TCDB%3A2.A.2","The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family"]]},{"id":"GO:0004565","l":"beta-galactosidase activity","na":1,"nb":28,"a":[["physiology/beta_galactosidase_activity.html","beta-galactosidase activity"]],"b":[["EC%3A3.2.1.23","beta-galactosidase"],["GO%3A0004565","beta-galactosidase activity"],["GO%3A0033943","galactan 1,3-beta-galactosidase activity"],["NCBIfam%3ANF041004","beta-galactosidase BgaS"],["NCBIfam%3ANF041462","beta-galactosidase GalA"],["NCBIfam%3ANF041463","beta-galactosidase GalB"]]},{"id":"GO:0046148","l":"pigment biosynthetic process","na":1,"nb":27,"a":[["morphology/pigmentation.html","pigmentation"]],"b":[["GO%3A0120577","1,2-dehydro-N-acetyldopamine biosynthetic process"],["GO%3A0120576","1,2-dehydro-N-beta-alanyldopamine biosynthetic process"],["GO%3A0009718","anthocyanin-containing compound biosynthetic process"],["GO%3A0051551","aurone biosynthetic process"],["GO%3A0016117","carotenoid biosynthetic process"],["GO%3A0015995","chlorophyll biosynthetic process"]]},{"id":"NCBITaxon:103690","l":"Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)","na":1,"nb":26,"a":[["morphology/heterocyst.html","heterocyst"]],"b":[["Pfam%3APF27270","Alr1449"],["Pfam%3APF27301","Alr2735 N-terminal domain"],["Pfam%3APF27288","Alr2735"],["Pfam%3APF21571","Arginine dihydrolase ArgZ-like, C-terminal, first region"],["Pfam%3APF21570","Arginine dihydrolase ArgZ-like, C-terminal, Rossmann fold"],["Pfam%3APF13205","Bacterial Ig-like domain"]]},{"id":"GO:0000910","l":"cytokinesis","na":1,"nb":24,"a":[["morphology/cell_length.html","cell length"]],"b":[["ComplexPortal%3ACPX-24856","GNAI1-RGS14, Gi-signalling regulatory complex"],["GO%3A0061639","Cdv-dependent cytokinesis"],["GO%3A0000911","cytokinesis by cell plate formation"],["GO%3A0000910","cytokinesis"],["GO%3A0061640","cytoskeleton-dependent cytokinesis"],["GO%3A0043093","FtsZ-dependent cytokinesis"]]},{"id":"GO:0006783","l":"heme biosynthetic process","na":1,"nb":24,"a":[["physiology/catalase_activity.html","catalase activity"]],"b":[["ComplexPortal%3ACPX-8302","ABCB10-ABCB7-FECH ABC transporter"],["GO%3A0006784","heme A biosynthetic process"],["GO%3A0006785","heme B biosynthetic process"],["GO%3A0006783","heme biosynthetic process"],["GO%3A0006786","heme C biosynthetic process"],["GO%3A0048034","heme O biosynthetic process"]]},{"id":"GO:0031412","l":"gas vesicle organization","na":1,"nb":24,"a":[["morphology/gas_vesicle.html","gas vesicle"]],"b":[["GO%3A0031412","gas vesicle organization"],["NCBIfam%3ANF041667","gas vesicle accessory protein GvpU"],["NCBIfam%3ANF046092","gas vesicle protein GvpA"],["NCBIfam%3ANF052351","gas vesicle protein GvpF"],["NCBIfam%3ANF045779","gas vesicle protein GvpG"],["NCBIfam%3ANF046090","gas vesicle protein GvpJ"]]},{"id":"CHEBI:24996","l":"lactate","na":1,"nb":23,"a":[["metabolism/lactic_acid_fermentation.html","lactic acid fermentation"]],"b":[["EC%3A1.1.1.436","lactate dehydrogenase (NAD(+),ferredoxin)"],["EC%3A3.5.1.124","protein deglycase"],["RHEA%3A57300","an N(2)-(1-hydroxy-2-oxopropyl)-2'-deoxyguanosine in DNA + H2O = a 2'-deoxyguanosine in DNA + lactate + H(+)"],["RHEA%3A57288","an N(2)-(1-hydroxy-2-oxopropyl)-guanosine in RNA + H2O = a guanosine in RNA + lactate + H(+)"],["RHEA%3A46964","lactate + 2 reduced [2Fe-2S]-[ferredoxin] + 2 NAD(+) = 2 oxidized [2Fe-2S]-[ferredoxin] + pyruvate + 2 NADH"],["RHEA%3A57244","N(2)-(1-hydroxy-2-oxopropyl)-dGTP + H2O = lactate + dGTP + H(+)"]]},{"id":"CHEBI:29242","l":"","na":1,"nb":23,"a":[["environment/arsenic_tolerant.html","arsenic tolerant"]],"b":[["EC%3A1.20.2.1","arsenate reductase (cytochrome c)"],["EC%3A1.20.4.1","arsenate reductase (glutathione/glutaredoxin)"],["EC%3A1.20.4.3","mycoredoxin"],["EC%3A1.20.4.4","arsenate reductase (thioredoxin)"],["EC%3A1.20.9.1","arsenate reductase (azurin)"],["EC%3A1.20.99.1","arsenate reductase (donor)"]]},{"id":"GO:0004563","l":"beta-N-acetylhexosaminidase 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germination"]],"b":[["GO%3A0120164","conidium germination"],["GO%3A0075226","encysted zoospore germination"],["GO%3A0009847","spore germination"],["proteintraitsmech%3ASEED_SUBSYSTEM_Spore_germination","Spore germination"],["NCBIfam%3ATIGR00912","endospore germination permease"],["NCBIfam%3ATIGR02887","Ger(x)C family spore germination protein"]]},{"id":"NCBITaxon:266834","l":"Rhizobium meliloti (strain 1021)","na":1,"nb":23,"a":[["ecology/nitrogen_fixing_symbiosis.html","nitrogen-fixing symbiosis"]],"b":[["Pfam%3APF13279","Thioesterase-like superfamily"],["Pfam%3APF26956","ACR family N-terminal ACT domain"],["Pfam%3APF27143","Atu0565 family"],["Pfam%3APF27488","BioS helical-like domain"],["Pfam%3APF05853","beta-keto acid cleavage enzyme"],["Pfam%3APF13746","4Fe-4S dicluster domain"]]},{"id":"NCBITaxon:632","l":"Yersinia pestis","na":1,"nb":23,"a":[["ecology/biosafety_level_3.html","biosafety level 3"]],"b":[["Pfam%3APF09255","Caf1 Capsule antigen"],["Pfam%3APF02611","CDP-diacylglycerol pyrophosphatase"],["Pfam%3APF07411","Domain of unknown function (DUF1508)"],["Pfam%3APF05171","Haemin-degrading HemS.ChuX domain"],["Pfam%3APF21500","DNA polymerase III subunit delta', AAA+ ATPase lid domain"],["Pfam%3APF11004","3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase"]]},{"id":"CHEBI:27547","l":"zeaxanthin","na":1,"nb":22,"a":[["morphology/orange_pigmented.html","orange pigmented"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_27547","requires zeaxanthin"],["EC%3A1.13.11.65","carotenoid isomerooxygenase"],["EC%3A1.13.11.84","crocetin dialdehyde synthase"],["EC%3A1.14.15.21","zeaxanthin epoxidase"],["EC%3A1.14.15.24","beta-carotene 3-hydroxylase"],["EC%3A1.14.99.64","zeaxanthin 4-ketolase"]]},{"id":"GO:0003341","l":"cilium movement","na":1,"nb":21,"a":[["ecology/soil_dwelling.html","soil-dwelling"]],"b":[["ComplexPortal%3ACPX-8086","Nexin-dynein regulatory complex"],["ComplexPortal%3ACPX-2626","Outer dynein arm-docking complex"],["ComplexPortal%3ACPX-8161","Radial spoke complex, ciliiar variant"],["ComplexPortal%3ACPX-8163","Radial spoke complex, ciliiar variant"],["ComplexPortal%3ACPX-8162","Radial spoke complex, flagellar variant"],["GO%3A0003341","cilium movement"]]},{"id":"NCBITaxon:243230","l":"Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)","na":1,"nb":21,"a":[["environment/radiotolerant.html","radiotolerant"]],"b":[["Pfam%3APF07282","Cas12f1-like, TNB domain"],["Pfam%3APF26517","DNA damage response protein D family"],["Pfam%3APF07733","Bacterial DNA polymerase III alpha NTPase domain"],["Pfam%3APF17657","Bacterial DNA polymerase III alpha subunit finger domain"],["Pfam%3APF11638","DnaA N-terminal domain"],["Pfam%3APF09348","Domain of unknown function (DUF1990)"]]},{"id":"CHEBI:18420","l":"","na":1,"nb":20,"a":[["morphology/cell_width_small.html","cell width small"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_18420","requires magnesium(2+)"],["EC%3A4.99.1.10","magnesium dechelatase"],["EC%3A6.6.1.1","magnesium chelatase"],["EC%3A7.2.2.14","P-type Mg(2+) transporter"],["RHEA%3A52788","chlorophyll a + 2 H(+) = pheophytin a + Mg(2+)"],["RHEA%3A52792","chlorophyllide a + 2 H(+) = pheophorbide a + Mg(2+)"]]},{"id":"DOI:10.1126/science.1138140","l":"","na":1,"nb":20,"a":[["genomics/phage_defense_system.html","phage defense system"]],"b":[["InterPro%3AIPR013383","CRISPR-associated protein DxTHG, conserved site"],["InterPro%3AIPR006483","CRISPR-associated Cas3-type, HD domain"],["InterPro%3AIPR013422","CRISPR-associated protein Cas5, N-terminal"],["InterPro%3AIPR019267","CRISPR-associated protein Cas6, C-terminal"],["InterPro%3AIPR045648","CRISPR-associated protein Cas6-like, N-terminal domain"],["InterPro%3AIPR019121","CRISPR-associated protein, CXXC-CXXC domain"]]},{"id":"GO:0000725","l":"recombinational repair","na":1,"nb":20,"a":[["genomics/ploidy.html","ploidy"]],"b":[["ComplexPortal%3ACPX-2197","Exodeoxyribonuclease V complex"],["ComplexPortal%3ACPX-1732","Ku70:Ku80 complex"],["ComplexPortal%3ACPX-1993","Ku70:Ku80 complex"],["ComplexPortal%3ACPX-2047","Ku70:Ku80 complex"],["ComplexPortal%3ACPX-2048","Ku70:Ku80 complex"],["ComplexPortal%3ACPX-5124","RuvAB Holliday junction DNA helicase complex"]]},{"id":"GO:0003989","l":"acetyl-CoA carboxylase activity","na":1,"nb":20,"a":[["metabolism/three_hydroxypropionate_bicycle.html","3-hydroxypropionate bicycle"]],"b":[["EC%3A6.4.1.2","acetyl-CoA carboxylase"],["RHEA%3A11308","hydrogencarbonate + acetyl-CoA + ATP = malonyl-CoA + ADP + phosphate + H(+)"],["ComplexPortal%3ACPX-3206","Acetyl-CoA carboxylase complex"],["GO%3A0003989","acetyl-CoA carboxylase activity"],["NCBIfam%3ANF015228","Acetyl co-enzyme A carboxylase carboxyltransferase-like"],["NCBIfam%3ATIGR00531","acetyl-CoA carboxylase biotin carboxyl carrier protein"]]},{"id":"NCBITaxon:1422","l":"Geobacillus stearothermophilus","na":1,"nb":20,"a":[["morphology/s_layer.html","S-layer"]],"b":[["Pfam%3APF09154","Alpha-amylase C-terminal"],["Pfam%3APF27529","AMPT"],["Pfam%3APF24856","L-arabinose isomerase central domain"],["Pfam%3APF02610","L-arabinose isomerase N-terminal domain"],["Pfam%3APF11762","L-arabinose isomerase C-terminal domain"],["Pfam%3APF17727","CtsR C-terminal dimerization domain"]]},{"id":"CHEBI:17057","l":"cellobiose","na":1,"nb":19,"a":[["metabolism/cellulolysis.html","cellulolysis"]],"b":[["EC%3A1.1.3.5","hexose oxidase"],["EC%3A1.1.99.18","cellobiose dehydrogenase (acceptor)"],["EC%3A2.4.1.20","cellobiose phosphorylase"],["EC%3A2.7.1.205","protein-N(pi)-phosphohistidine--D-cellobiose phosphotransferase"],["EC%3A2.7.1.85","beta-glucoside kinase"],["EC%3A5.1.3.11","cellobiose epimerase"]]},{"id":"GO:0003993","l":"acid phosphatase activity","na":1,"nb":19,"a":[["physiology/acid_phosphatase_activity.html","acid phosphatase activity"]],"b":[["EC%3A3.1.3.2","acid phosphatase"],["ComplexPortal%3ACPX-120","Prostatic acid phosphatase complex"],["ComplexPortal%3ACPX-121","Prostatic acid phosphatase complex"],["GO%3A0003993","acid phosphatase activity"],["NCBIfam%3ATIGR01672","acid phosphatase AphA"],["NCBIfam%3ANF045654","acid phosphatase PhoC"]]},{"id":"GO:0004559","l":"alpha-mannosidase activity","na":1,"nb":19,"a":[["physiology/alpha_mannosidase_activity.html","alpha-mannosidase activity"]],"b":[["EC%3A3.2.1.24","alpha-mannosidase"],["GO%3A0004559","alpha-mannosidase activity"],["GO%3A0004569","glycoprotein endo-alpha-1,2-mannosidase activity"],["GO%3A0033915","mannan 1,2-(1,3)-alpha-mannosidase activity"],["GO%3A0008496","mannan endo-1,6-alpha-mannosidase activity"],["GO%3A0033941","mannan exo-1,2-1,6-alpha-mannosidase activity"]]},{"id":"GO:0008150","l":"biological_process","na":1,"nb":19,"a":[["upper/biological_process.html","biological process"]],"b":[["GO%3A0044848","biological phase"],["GO%3A0008150","biological_process"],["GO%3A0044419","biological process involved in interspecies interaction between organisms"],["GO%3A0051703","biological process involved in intraspecies interaction between organisms"],["GO%3A0065007","biological regulation"],["GO%3A0009987","cellular process"]]},{"id":"GO:0019290","l":"siderophore biosynthetic process","na":1,"nb":19,"a":[["physiology/siderophore_production.html","siderophore production"]],"b":[["GO%3A0140614","1,8-dihydroxynaphthalene-melanin biosynthetic process"],["GO%3A0042861","achromobactin biosynthetic process"],["GO%3A0019540","catechol-containing siderophore biosynthetic process"],["GO%3A0042858","chrysobactin biosynthetic process"],["GO%3A0019539","hydroxymate-containing siderophore biosynthetic process"],["GO%3A0042864","pyochelin biosynthetic process"]]},{"id":"GO:0043885","l":"anaerobic carbon-monoxide dehydrogenase activity","na":1,"nb":19,"a":[["physiology/carboxydotrophic.html","carboxydotrophic"]],"b":[["EC%3A1.2.7.4","anaerobic carbon-monoxide dehydrogenase"],["RHEA%3A21040","CO + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O = 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + 2 H(+)"],["GO%3A0043885","anaerobic carbon-monoxide dehydrogenase activity"],["NCBIfam%3ATIGR02416","aerobic carbon-monoxide dehydrogenase large subunit"],["NCBIfam%3ATIGR01702","anaerobic carbon-monoxide dehydrogenase catalytic subunit"],["NCBIfam%3ATIGR00314","CO dehydrogenase/acetyl-CoA synthase complex subunit alpha"]]},{"id":"GO:0045277","l":"respiratory chain complex IV","na":1,"nb":19,"a":[["physiology/oxidase_activity.html","oxidase activity"]],"b":[["ComplexPortal%3ACPX-1721","Mitochondrial respiratory chain complex IV, COX5A variant"],["ComplexPortal%3ACPX-1722","Mitochondrial respiratory chain complex IV, COX5B variant"],["ComplexPortal%3ACPX-6123","Mitochondrial respiratory chain complex IV"],["ComplexPortal%3ACPX-8620","Mitochondrial respiratory chain complex IV"],["ComplexPortal%3ACPX-9641","Mitochondrial respiratory chain complex IV"],["ComplexPortal%3ACPX-8621","Mitochondrial respiratory chain complex IV, testis-specific variant"]]},{"id":"GO:0045493","l":"xylan catabolic process","na":1,"nb":19,"a":[["metabolism/xylan_degradation.html","xylan degradation"]],"b":[["GO%3A2000888","arabinoxylan-containing compound catabolic process"],["GO%3A2000886","glucuronoxylan catabolic process"],["GO%3A0045493","xylan catabolic process"],["NCBIfam%3ANF042968","acetylxylan esterase AxeA1"],["NCBIfam%3ANF041579","beta-xylosidase"],["NCBIfam%3ANF042969","bifunctional acetylxylan esterase/glucomannan deacetylase AxeC2"]]},{"id":"CHEBI:16838","l":"polyphosphate","na":1,"nb":18,"a":[["environment/zinc_tolerant.html","zinc tolerant"]],"b":[["EC%3A2.7.1.63","polyphosphate--glucose phosphotransferase"],["EC%3A2.7.4.1","ATP-polyphosphate phosphotransferase"],["EC%3A2.7.4.17","3-phosphoglyceroyl-phosphate--polyphosphate phosphotransferase"],["EC%3A2.7.4.20","dolichyl-diphosphate--polyphosphate phosphotransferase"],["EC%3A2.7.4.33","AMP-polyphosphate phosphotransferase"],["EC%3A2.7.4.34","GDP-polyphosphate phosphotransferase"]]},{"id":"CHEBI:16169","l":"","na":1,"nb":17,"a":[["morphology/pigmentation.html","pigmentation"]],"b":[["EC%3A1.13.11.27","4-hydroxyphenylpyruvate dioxygenase"],["EC%3A1.13.11.5","homogentisate 1,2-dioxygenase"],["EC%3A1.14.13.18","4-hydroxyphenylacetate 1-monooxygenase"],["EC%3A1.14.13.63","3-hydroxyphenylacetate 6-hydroxylase"],["EC%3A2.5.1.115","homogentisate phytyltransferase"],["EC%3A2.5.1.116","homogentisate geranylgeranyltransferase"]]},{"id":"GO:0051701","l":"biological process involved in interaction with host","na":1,"nb":17,"a":[["ecology/plant_pathogen.html","plant pathogen"]],"b":[["GO%3A0044002","acquisition of nutrients from host"],["GO%3A0044406","adhesion of symbiont to host"],["GO%3A0051701","biological process involved in interaction with host"],["GO%3A0035891","exit from host cell"],["GO%3A0044001","migration in host"],["GO%3A0075136","response to host"]]},{"id":"GO:0106435","l":"carboxylesterase activity","na":1,"nb":17,"a":[["physiology/carboxylesterase_activity.html","carboxylesterase activity"]],"b":[["EC%3A3.1.1.1","carboxylesterase"],["RHEA%3A63052","1-O-methyl-(5Z,8Z,11Z,14Z)-eicosatetraenoate + H2O = methanol + (5Z,8Z,11Z,14Z)-eicosatetraenoate + H(+)"],["RHEA%3A21164","a carboxylic ester + H2O = an alcohol + a carboxylate + H(+)"],["RHEA%3A59388","a fatty acid ester + H2O = an aliphatic alcohol + a fatty acid + H(+)"],["RHEA%3A50148","a fatty acid ethyl ester + H2O = ethanol + a fatty acid + H(+)"],["RHEA%3A31779","an all-trans-retinyl ester + H2O = 13-cis-retinol + a fatty acid + H(+)"]]},{"id":"GO:0110143","l":"magnetosome","na":1,"nb":17,"a":[["morphology/magnetosome.html","magnetosome"]],"b":[["GO%3A0110143","magnetosome"],["NCBIfam%3ANF040997","liposome tubulation protein MamY"],["NCBIfam%3ANF040917","magnetic particle specific iron-binding protein Mms6"],["NCBIfam%3ANF040986","magnetosome biogenesis transporter MamH"],["NCBIfam%3ANF040989","magnetosome biogenesis transporter MamN"],["NCBIfam%3ANF040998","magnetosome biogenesis transporter MamZ"]]},{"id":"UniProt:P35149","l":"","na":1,"nb":17,"a":[["morphology/spore_shaped.html","spore shaped"]],"b":[["EC%3A3.6.1.-","In phosphorus-containing anhydrides"],["GO%3A0043595","endospore cortex"],["GO%3A0042601","endospore-forming forespore"],["GO%3A0031160","spore wall"],["GO%3A0000270","peptidoglycan metabolic process"],["GO%3A0009847","spore germination"]]},{"id":"CHEBI:48828","l":"cobalt(2+)","na":1,"nb":16,"a":[["environment/cobalt_tolerant.html","cobalt tolerant"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_48828","requires cobalt(2+)"],["EC%3A1.16.99.1","[Co(II) methylated amine-specific corrinoid protein] reductase"],["EC%3A4.99.1.3","sirohydrochlorin cobaltochelatase"],["EC%3A6.6.1.2","cobaltochelatase"],["RHEA%3A65832","2 Co(II)-[dimethylamine-specific corrinoid protein] + AH2 + ATP + H2O = 2 Co(I)-[dimethylamine-specific corrinoid protein] + A + ADP + phosphate + 3 H(+)"],["RHEA%3A65816","2 Co(II)-[methylamine-specific corrinoid protein] + AH2 + ATP + H2O = 2 Co(I)-[methylamine-specific corrinoid protein] + A + ADP + phosphate + 3 H(+)"]]},{"id":"GO:0004556","l":"alpha-amylase activity","na":1,"nb":16,"a":[["metabolism/starch_degradation.html","starch degradation"]],"b":[["EC%3A3.2.1.1","alpha-amylase"],["GO%3A0004556","alpha-amylase activity"],["NCBIfam%3ANF041321","alpha-amylase MalA"],["NCBIfam%3ANF006971","alpha-amylase"],["NCBIfam%3ANF007051","alpha-amylase"],["NCBIfam%3ANF007052","alpha-amylase"]]},{"id":"GO:0004566","l":"beta-glucuronidase activity","na":1,"nb":16,"a":[["physiology/beta_glucuronidase_activity.html","beta-glucuronidase activity"]],"b":[["EC%3A3.2.1.31","beta-glucuronidase"],["RHEA%3A76111","4-methylumbelliferone beta-D-glucuronate + H2O = 4-methylumbelliferone + D-glucuronate"],["RHEA%3A17633","a beta-D-glucuronoside + H2O = D-glucuronate + an alcohol"],["RHEA%3A30475","oroxylin A 7-O-beta-D-glucuronate + H2O = oroxylin A + D-glucuronate + H(+)"],["RHEA%3A28326","wogonin 7-O-beta-D-glucuronate + H2O = wogonin + D-glucuronate + H(+)"],["GO%3A0004566","beta-glucuronidase activity"]]},{"id":"InterPro:IPR002105","l":"Dockerin type I repeat","na":1,"nb":16,"a":[["metabolism/cellulolysis.html","cellulolysis"]],"b":[["Pfam%3APF03425","Carbohydrate binding domain (family 11)"],["Pfam%3APF17996","Carbohydrate esterase 2 N-terminal"],["Pfam%3APF02927","Cellulase N-terminal ig-like domain"],["Pfam%3APF00963","Cohesin domain"],["Pfam%3APF00404","Dockerin type I domain"],["Pfam%3APF07554","FIVAR domain"]]},{"id":"DOI:10.1038/s41564-020-0777-y","l":"","na":1,"nb":15,"a":[["genomics/cbass_system.html","CBASS system"]],"b":[["NCBIfam%3ANF041116","CBASS oligonucleotide cyclase"],["NCBIfam%3ANF041117","CBASS oligonucleotide cyclase"],["NCBIfam%3ANF050171","CBASS system CD-NTase-associated NAD(+) hydrolase Cap12"],["NCBIfam%3ANF050172","CBASS system CD-NTase-associated NAD(+) hydrolase Cap12"],["NCBIfam%3ANF050170","CBASS system CD-NTase/cGAS isopeptidase Cap3"],["NCBIfam%3ANF051438","CD-NTase-associated endodeoxyribonuclease Cap4"]]},{"id":"GO:0045273","l":"respiratory chain complex II (succinate dehydrogenase)","na":1,"nb":15,"a":[["metabolism/oxidative_phosphorylation.html","Oxidative phosphorylation"]],"b":[["ComplexPortal%3ACPX-561","Mitochondrial respiratory chain complex II"],["ComplexPortal%3ACPX-562","Mitochondrial respiratory chain complex II"],["ComplexPortal%3ACPX-564","Mitochondrial respiratory chain complex II"],["ComplexPortal%3ACPX-565","Mitochondrial respiratory chain complex II"],["ComplexPortal%3ACPX-566","Mitochondrial respiratory chain complex II"],["ComplexPortal%3ACPX-8622","Mitochondrial respiratory chain complex II"]]},{"id":"GO:0045490","l":"pectin catabolic process","na":1,"nb":15,"a":[["metabolism/pectin_degradation.html","pectin degradation"]],"b":[["GO%3A0045490","pectin catabolic process"],["NCBIfam%3ANF002091","5-dehydro-4-deoxy-D-glucuronate isomerase"],["NCBIfam%3ANF025934","oligogalacturonate lyase family protein"],["NCBIfam%3ANF041904","pectate disaccharide-lyase PelW"],["NCBIfam%3ANF041903","pectate disaccharide-lyase PelX"],["NCBIfam%3ANF041898","pectate lyase PelI"]]},{"id":"InterPro:IPR028629","l":"","na":1,"nb":15,"a":[["genomics/crispr_cas_system.html","CRISPR-Cas system"]],"b":[["Pfam%3APF18470","Cas9 alpha-helical lobe domain"],["Pfam%3APF17893","CRISPR-associated endonuclease Cas9 beta-hairpin domain"],["Pfam%3APF18525","Cas9 C-terminal domain"],["Pfam%3APF21574","CRISPR-associated endonuclease Cas9, C-terminal domain"],["Pfam%3APF16595","PAM-interacting domain of CRISPR-associated endonuclease Cas9"],["Pfam%3APF18070","CRISPR-Cas9 PI domain"]]},{"id":"METPO:1000802","l":"Anaerobic respiration","na":15,"nb":1,"a":[["metabolism/anaerobic_oxidation_of_methane.html","anaerobic oxidation of methane"],["metabolism/anaerobic_respiration.html","Anaerobic respiration"],["metabolism/arsenate_respiration.html","arsenate respiration"],["metabolism/chlorate_respiration.html","chlorate respiration"],["metabolism/dimethyl_sulfoxide_respiration.html","dimethyl sulfoxide respiration"],["metabolism/dissimilatory_metal_reduction.html","dissimilatory metal reduction"]],"b":[["METPO%3A1000802","Anaerobic respiration"]]},{"id":"METPO:1002005","l":"Fermentation","na":15,"nb":1,"a":[["metabolism/acetone_butanol_ethanol_fermentation.html","acetone-butanol-ethanol fermentation"],["metabolism/butanediol_fermentation.html","2,3-butanediol fermentation"],["metabolism/butyric_acid_fermentation.html","butyric acid fermentation"],["metabolism/citrate_fermentation.html","citrate fermentation"],["metabolism/ethanol_fermentation.html","ethanol fermentation"],["metabolism/fermentation.html","Fermentation"]],"b":[["METPO%3A1002005","Fermentation"]]},{"id":"UniProt:P09373","l":"","na":1,"nb":15,"a":[["metabolism/mixed_acid_fermentation.html","mixed-acid fermentation"]],"b":[["EC%3A2.3.1.54","formate C-acetyltransferase"],["RHEA%3A11844","formate + acetyl-CoA = pyruvate + CoA"],["GO%3A0008861","formate C-acetyltransferase activity"],["NCBIfam%3ATIGR01255","formate C-acetyltransferase"],["InterPro%3AIPR019777","Formate C-acetyltransferase glycine radical, conserved site"],["CDD%3Acd01678","PFL1"]]},{"id":"GO:0004629","l":"C-type glycerophospholipase activity","na":1,"nb":14,"a":[["physiology/lecithinase_activity.html","lecithinase activity"]],"b":[["GO%3A0004629","C-type glycerophospholipase activity"],["GO%3A0140335","GPI anchor phospholipase C activity"],["GO%3A0140324","lysophospholipase C activity"],["GO%3A0034480","phosphatidylcholine phospholipase C activity"],["GO%3A0034479","phosphatidylglycerol phospholipase C activity"],["GO%3A0004435","phosphatidylinositol-4,5-bisphosphate phospholipase C activity"]]},{"id":"GO:0009408","l":"response to heat","na":1,"nb":14,"a":[["physiology/heat_shock_response.html","heat shock response"]],"b":[["ComplexPortal%3ACPX-4887","DNA-directed RNA polymerase holoenzyme complex, SigmaH variant"],["ComplexPortal%3ACPX-636","ISW1b chromatin remodeling complex"],["GO%3A0034605","cellular response to heat"],["GO%3A0036168","filamentous growth of a population of unicellular organisms in response to heat"],["GO%3A0010286","heat acclimation"],["GO%3A0009408","response to heat"]]},{"id":"GO:0015891","l":"siderophore transport","na":1,"nb":14,"a":[["physiology/siderophore_production.html","siderophore production"]],"b":[["GO%3A0042935","achromobactin transport"],["GO%3A0042932","chrysobactin transport"],["GO%3A0042930","enterobactin transport"],["GO%3A0044718","siderophore transmembrane transport"],["GO%3A0015891","siderophore transport"],["NCBIfam%3ANF007349","catecholate siderophore receptor Fiu"]]},{"id":"GO:0090599","l":"alpha-glucosidase activity","na":1,"nb":14,"a":[["physiology/alpha_glucosidase_activity.html","alpha-glucosidase activity"]],"b":[["GO%3A0004558","alpha-1,4-glucosidase activity"],["GO%3A0090599","alpha-glucosidase activity"],["GO%3A0004135","amylo-alpha-1,6-glucosidase activity"],["GO%3A0033933","branched-dextran exo-1,2-alpha-glucosidase activity"],["GO%3A0106407","Glc2Man9GlcNAc2 oligosaccharide glucosidase activity"],["GO%3A0004573","Glc3Man9GlcNAc2 oligosaccharide glucosidase activity"]]},{"id":"UniProt:Q58256","l":"","na":1,"nb":14,"a":[["metabolism/methanogenesis.html","Methanogenesis"]],"b":[["GO%3A0050524","coenzyme-B sulfoethylthiotransferase activity"],["GO%3A0015948","methanogenesis"],["NCBIfam%3ATIGR03256","coenzyme-B sulfoethylthiotransferase subunit alpha"],["InterPro%3AIPR009047","Methyl-coenzyme M reductase, alpha subunit, C-terminal"],["InterPro%3AIPR003183","Methyl-coenzyme M reductase, alpha subunit, N-terminal"],["Pfam%3APF02745","Methyl-coenzyme M reductase alpha subunit, N-terminal domain"]]},{"id":"GO:0004781","l":"sulfate adenylyltransferase (ATP) activity","na":1,"nb":13,"a":[["metabolism/dissimilatory_sulfate_reduction.html","dissimilatory sulfate reduction"]],"b":[["EC%3A2.7.7.4","sulfate adenylyltransferase"],["RHEA%3A18133","sulfate + ATP + H(+) = adenosine 5'-phosphosulfate + diphosphate"],["ComplexPortal%3ACPX-4471","Sulfate adenylyltransferase complex"],["GO%3A0004781","sulfate adenylyltransferase (ATP) activity"],["NCBIfam%3ATIGR02034","sulfate adenylyltransferase, large subunit"],["NCBIfam%3ATIGR02039","sulfate adenylyltransferase, small subunit"]]},{"id":"GO:0016859","l":"cis-trans isomerase activity","na":1,"nb":13,"a":[["environment/temperature_delta_high.html","temperature delta high"]],"b":[["GO%3A0047466","2-chloro-4-carboxymethylenebut-2-en-1,4-olide isomerase activity"],["GO%3A0090471","9,15,9'-tri-cis-zeta-carotene isomerase activity"],["GO%3A0106365","beta-carotene isomerase activity"],["GO%3A0046608","carotenoid isomerase activity"],["GO%3A0016859","cis-trans isomerase activity"],["GO%3A0047885","farnesol 2-isomerase activity"]]},{"id":"GO:0120253","l":"hydrocarbon catabolic process","na":1,"nb":13,"a":[["metabolism/hydrocarbon_degradation.html","hydrocarbon degradation"]],"b":[["GO%3A0043448","alkane catabolic process"],["GO%3A0043451","alkene catabolic process"],["GO%3A0043454","alkyne catabolic process"],["GO%3A1900996","benzene catabolic process"],["GO%3A0018915","ethylbenzene catabolic process"],["GO%3A0019429","fluorene catabolic process"]]},{"id":"InterPro:IPR000673","l":"Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase","na":1,"nb":13,"a":[["physiology/chemotaxis.html","chemotaxis"]],"b":[["GO%3A1990827","deaminase binding"],["GO%3A0008984","protein-glutamate methylesterase activity"],["GO%3A0050568","protein-glutamine glutaminase activity"],["GO%3A0006482","protein demethylation"],["NCBIfam%3ANF001965","chemotaxis-specific protein-glutamate methyltransferase CheB"],["NCBIfam%3ANF009206","chemotaxis-specific protein-glutamate methyltransferase CheB"]]},{"id":"UniProt:P0A7G6","l":"","na":1,"nb":13,"a":[["physiology/sos_response.html","SOS response"]],"b":[["ComplexPortal%3ACPX-5544","DNA polymerase V mutasome complex"],["GO%3A0140664","ATP-dependent DNA damage sensor activity"],["NCBIfam%3ATIGR02012","recombinase RecA"],["InterPro%3AIPR020584","DNA recombination/repair protein RecA, conserved site"],["CDD%3Acd00983","RecA"],["InterPro%3AIPR020587","DNA recombination and repair protein RecA, monomer-monomer interface"]]},{"id":"DOI:10.1038/s41564-017-0051-0","l":"","na":1,"nb":12,"a":[["genomics/disarm_system.html","DISARM system"]],"b":[["NCBIfam%3ANF038323","DISARM system-associated protein DrmE"],["NCBIfam%3ANF038325","DISARM system helicase DrmA"],["NCBIfam%3ANF038326","DISARM system helicase DrmA"],["NCBIfam%3ANF038319","DISARM system phospholipase D-like protein DrmC"],["NCBIfam%3ANF038317","DISARM system SNF2-like helicase DrmD"],["NCBIfam%3ANF038318","DISARM system SNF2-like helicase DrmD"]]},{"id":"GO:0004536","l":"DNA nuclease activity","na":1,"nb":12,"a":[["physiology/dnase_activity.html","DNase activity"]],"b":[["GO%3A0004520","DNA endonuclease activity"],["GO%3A0004529","DNA exonuclease activity"],["GO%3A0004536","DNA nuclease activity"],["NCBIfam%3ANF053575","GINS-associated RecJ family nuclease"],["NCBIfam%3ANF053577","Hef-associated nuclease"],["NCBIfam%3ANF053576","RecJ family nuclease"]]},{"id":"GO:0008964","l":"phosphoenolpyruvate carboxylase activity","na":1,"nb":12,"a":[["metabolism/dicarboxylate_four_hydroxybutyrate_cycle.html","dicarboxylate/4-hydroxybutyrate cycle"]],"b":[["EC%3A4.1.1.31","phosphoenolpyruvate carboxylase"],["RHEA%3A28370","oxaloacetate + phosphate = phosphoenolpyruvate + hydrogencarbonate"],["GO%3A0008964","phosphoenolpyruvate carboxylase activity"],["NCBIfam%3ANF000584","phosphoenolpyruvate carboxylase"],["NCBIfam%3ANF012532","phosphoenolpyruvate carboxylase"],["NCBIfam%3ANF025376","phosphoenolpyruvate carboxylase"]]},{"id":"GO:0009512","l":"cytochrome b6f complex","na":1,"nb":12,"a":[["metabolism/oxygenic_photosynthesis.html","oxygenic photosynthesis"]],"b":[["GO%3A0009512","cytochrome b6f complex"],["NCBIfam%3ANF014576","cytochrome b6-f complex subunit PetG"],["NCBIfam%3ANF016971","cytochrome b6-f complex subunit PetL"],["NCBIfam%3ANF015687","cytochrome b6-f complex subunit PetN"],["NCBIfam%3ANF050003","cytochrome b6f subunit PetP"],["NCBIfam%3ANF019653","PetM family cytochrome b6-f complex subunit 7"]]},{"id":"GO:0045275","l":"respiratory chain complex III","na":1,"nb":12,"a":[["physiology/organoheterotrophic.html","organoheterotrophic"]],"b":[["ComplexPortal%3ACPX-560","Mitochondrial respiratory chain complex III"],["ComplexPortal%3ACPX-563","Mitochondrial respiratory chain complex III"],["ComplexPortal%3ACPX-567","Mitochondrial respiratory chain complex III"],["ComplexPortal%3ACPX-8730","Mitochondrial respiratory chain complex III"],["ComplexPortal%3ACPX-9308","Mitochondrial respiratory chain complex III"],["ComplexPortal%3ACPX-8737","Mitochondrial respiratory chain complex III, testis-specific variant"]]},{"id":"InterPro:IPR000780","l":"MCP methyltransferase, CheR-type","na":1,"nb":12,"a":[["physiology/chemotaxis.html","chemotaxis"]],"b":[["GO%3A0098561","methyl accepting chemotaxis protein complex"],["GO%3A0008983","protein-glutamate O-methyltransferase activity"],["NCBIfam%3ANF007902","protein-glutamate O-methyltransferase CheR"],["InterPro%3AIPR022641","Chemotaxis receptor methyltransferase CheR, N-terminal"],["InterPro%3AIPR000780","MCP methyltransferase, CheR-type"],["InterPro%3AIPR022642","MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal"]]},{"id":"UniProt:P04949","l":"","na":1,"nb":12,"a":[["morphology/flagellated.html","flagellated"]],"b":[["InterPro%3AIPR049365","Flagellin, barrel domain"],["InterPro%3AIPR046358","Flagellin, C-terminal domain"],["InterPro%3AIPR014981","Flagellin D3"],["InterPro%3AIPR001029","Flagellin, N-terminal domain"],["Pfam%3APF08884","Flagellin D3 domain"],["Pfam%3APF21504","Flagellin, barrel domain"]]},{"id":"UniProt:P23874","l":"","na":1,"nb":12,"a":[["physiology/persister_cell_formation.html","persister cell formation"]],"b":[["ComplexPortal%3ACPX-180","HipBA toxin-antitoxin complex"],["GO%3A0001217","DNA-binding transcription repressor activity"],["GO%3A0022611","dormancy process"],["GO%3A0036289","peptidyl-serine autophosphorylation"],["GO%3A0040008","regulation of growth"],["GO%3A0044010","single-species biofilm formation"]]},{"id":"CHEBI:16510","l":"","na":1,"nb":11,"a":[["metabolism/three_hydroxypropionate_bicycle.html","3-hydroxypropionate bicycle"]],"b":[["EC%3A1.1.1.298","3-hydroxypropionate dehydrogenase (NADP(+))"],["EC%3A1.1.1.59","3-hydroxypropionate dehydrogenase"],["EC%3A6.2.1.36","3-hydroxypropionyl-CoA synthase"],["RHEA%3A59432","3-hydroxypropanal + NAD(+) + H2O = 3-hydroxypropanoate + NADH + 2 H(+)"],["RHEA%3A59428","3-hydroxypropanal + NADP(+) + H2O = 3-hydroxypropanoate + NADPH + 2 H(+)"],["RHEA%3A67136","3-hydroxypropanoate + ATP + CoA = 3-hydroxypropanoyl-CoA + ADP + phosphate"]]},{"id":"CHEBI:16724","l":"4-hydroxybutyrate","na":1,"nb":11,"a":[["metabolism/three_hydroxypropionate_four_hydroxybutyrate_cycle.html","3-hydroxypropionate/4-hydroxybutyrate cycle"]],"b":[["EC%3A1.1.1.61","4-hydroxybutyrate dehydrogenase"],["EC%3A1.1.1.n11","succinic semialdehyde reductase"],["EC%3A1.1.99.24","hydroxyacid-oxoacid transhydrogenase"],["EC%3A6.2.1.40","4-hydroxybutyrate--CoA ligase (AMP-forming)"],["EC%3A6.2.1.56","4-hydroxybutyrate--CoA ligase (ADP-forming)"],["RHEA%3A24734","4-hydroxybutanoate + 2-oxoglutarate = (R)-2-hydroxyglutarate + succinate semialdehyde"]]},{"id":"GO:0004737","l":"pyruvate decarboxylase activity","na":1,"nb":11,"a":[["metabolism/ethanol_fermentation.html","ethanol fermentation"]],"b":[["EC%3A4.1.1.1","pyruvate decarboxylase"],["RHEA%3A55072","2-oxobutanoate + H(+) = propanal + CO2"],["RHEA%3A50312","2-oxopentanoate + H(+) = butanal + CO2"],["RHEA%3A54356","3-methyl-2-oxobutanoate + H(+) = 2-methylpropanal + CO2"],["RHEA%3A54360","4-methyl-2-oxopentanoate + H(+) = 3-methylbutanal + CO2"],["RHEA%3A11628","a 2-oxocarboxylate + H(+) = an aldehyde + CO2"]]},{"id":"NCBITaxon:470","l":"Acinetobacter baumannii","na":1,"nb":11,"a":[["ecology/opportunistic_pathogen.html","opportunistic pathogen"]],"b":[["Pfam%3APF22829","HphA C-terminal domain"],["Pfam%3APF22828","HphA N-terminal heme-binding domain"],["Pfam%3APF28205","Ciprofloxacin tolerance protein"],["Pfam%3APF19582","Solute-binding protein AdeT 1/2"],["PROSITE%3APS00337","Beta-lactamase class-D active site"],["Pfam%3APF24575","Surface lipoprotein assembly modifier, N-terminal TPR repeats"]]},{"id":"NCBITaxon:882","l":"Nitratidesulfovibrio vulgaris str. Hildenborough","na":1,"nb":11,"a":[["metabolism/dissimilatory_sulfate_reduction.html","dissimilatory sulfate reduction"]],"b":[["IDPO%3A0000031","flexible C-terminal tail"],["Pfam%3APF02085","Class III cytochrome C family"],["Pfam%3APF06397","Desulfoferrodoxin, N-terminal domain"],["Pfam%3APF01880","Desulfoferrodoxin"],["Pfam%3APF12797","4Fe-4S binding domain"],["Pfam%3APF06180","Cobalt chelatase (CbiK)"]]},{"id":"UniProt:P0A7C2","l":"","na":1,"nb":11,"a":[["physiology/sos_response.html","SOS response"]],"b":[["NCBIfam%3ATIGR00498","transcriptional repressor LexA"],["proteintraitsmech%3AMEROPS_CLEAVAGE_S24_001","repressor LexA cleavage specificity"],["CDD%3Acd06529","S24_LexA-like"],["InterPro%3AIPR039418","LexA-like"],["InterPro%3AIPR006199","LexA repressor, DNA-binding domain"],["InterPro%3AIPR015927","Peptidase S24/S26A/S26B/S26C"]]},{"id":"UniProt:P0AEK4","l":"","na":1,"nb":11,"a":[["physiology/homeoviscous_adaptation.html","homeoviscous adaptation"]],"b":[["GO%3A1902494","catalytic complex"],["GO%3A0004318","enoyl-[acyl-carrier-protein] reductase (NADH) activity"],["GO%3A0070404","NADH binding"],["GO%3A0009102","biotin biosynthetic process"],["GO%3A0030497","fatty acid elongation"],["GO%3A0008610","lipid biosynthetic process"]]},{"id":"GO:0004557","l":"alpha-galactosidase activity","na":1,"nb":10,"a":[["physiology/alpha_galactosidase_activity.html","alpha-galactosidase activity"]],"b":[["EC%3A3.2.1.22","alpha-galactosidase"],["RHEA%3A21112","a globoside Gb3Cer (d18:1(4E)) + H2O = a beta-D-Gal-(1->4)-beta-D-Glc-(1<->1)-Cer(d18:1(4E)) + D-galactose"],["RHEA%3A28663","melibiose + H2O = D-galactose + D-glucose"],["GO%3A0004557","alpha-galactosidase activity"],["GO%3A0052692","raffinose alpha-galactosidase activity"],["NCBIfam%3ANF053652","beta-L-arabinopyranosidase"]]},{"id":"GO:0008218","l":"bioluminescence","na":1,"nb":10,"a":[["physiology/bioluminescence.html","bioluminescence"]],"b":[["GO%3A0008218","bioluminescence"],["NCBIfam%3ANF052253","fatty acid reductase transferase subunit LuxD"],["NCBIfam%3ANF052244","long-chain-fatty-acid--protein ligase LuxE"],["NCBIfam%3ANF052254","luciferase subunit alpha"],["NCBIfam%3ANF052255","luciferase subunit beta"],["InterPro%3AIPR007534","Acyl-protein synthetase, LuxE"]]},{"id":"GO:0030313","l":"cell envelope","na":1,"nb":10,"a":[["metabolism/cable_bacteria_metabolism.html","Cable bacteria metabolism"]],"b":[["GO%3A0030313","cell envelope"],["PANTHER%3APTHR39576","ATTACHING AND EFFACING PROTEIN HOMOLOG-RELATED-RELATED"],["PANTHER%3APTHR38762","CRYPTIC OUTER MEMBRANE PORIN BGLH-RELATED"],["PANTHER%3APTHR41164","CURLI PRODUCTION ASSEMBLY/TRANSPORT COMPONENT CSGG"],["PANTHER%3APTHR30036","D-XYLOSE-BINDING PERIPLASMIC PROTEIN"],["PANTHER%3APTHR30532","IRON III DICITRATE-BINDING PERIPLASMIC PROTEIN"]]},{"id":"GO:0035434","l":"copper ion transmembrane transport","na":1,"nb":10,"a":[["environment/copper_tolerant.html","copper tolerant"]],"b":[["ComplexPortal%3ACPX-2254","Cus cation efflux complex"],["GO%3A0140636","copper import into the mitochondrion"],["GO%3A0140145","copper ion export from vacuole"],["GO%3A0060003","copper ion export"],["GO%3A0097430","copper ion import across prospore membrane"],["GO%3A7770057","copper ion import into Golgi lumen"]]},{"id":"GO:0046274","l":"lignin catabolic process","na":1,"nb":10,"a":[["metabolism/lignin_degradation.html","lignin degradation"]],"b":[["GO%3A1990487","anaerobic lignin catabolic process"],["GO%3A1901062","guaiacyl lignin catabolic process"],["GO%3A0046274","lignin catabolic process"],["GO%3A1901059","p-hydroxyphenyl lignin catabolic process"],["GO%3A1901065","syringal lignin catabolic process"],["NCBIfam%3ANF042997","beta-etherase"]]},{"id":"NCBITaxon:192222","l":"Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)","na":1,"nb":10,"a":[["environment/capnophilic.html","capnophilic"]],"b":[["Pfam%3APF26365","Apolipoprotein N-acyltransferase integral membrane domain"],["Pfam%3APF22131","CRISPR-associated endonuclease CjCas9 PI-CTD domain"],["Pfam%3APF22129","CRISPR-associated endonuclease CjCas9 wedge domain"],["Pfam%3APF02554","Carbon starvation protein CstA"],["Pfam%3APF27310","HrcA C-terminal domain"],["Pfam%3APF05538","Campylobacter major outer membrane protein"]]},{"id":"NCBITaxon:224911","l":"Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)","na":1,"nb":10,"a":[["morphology/subpolar_flagellation.html","subpolar flagellation"]],"b":[["Pfam%3APF00142","4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family"],["Pfam%3APF14715","N-terminal domain of cytochrome oxidase-cbb3, 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protein"]]},{"id":"GO:0004586","l":"ornithine decarboxylase activity","na":1,"nb":9,"a":[["physiology/ornithine_decarboxylase_activity.html","ornithine decarboxylase activity"]],"b":[["EC%3A4.1.1.17","ornithine decarboxylase"],["RHEA%3A22964","L-ornithine + H(+) = putrescine + CO2"],["GO%3A0004586","ornithine decarboxylase activity"],["NCBIfam%3ATIGR04301","ornithine decarboxylase SpeF"],["MCSA%3A860","ornithine decarboxylase"],["MCSA%3A937","ornithine decarboxylase"]]},{"id":"GO:0006097","l":"glyoxylate cycle","na":1,"nb":9,"a":[["physiology/heterotrophic.html","heterotrophic"]],"b":[["GO%3A0006097","glyoxylate cycle"],["proteintraitsmech%3ASEED_SUBSYSTEM_Glyoxylate_bypass","Glyoxylate bypass"],["NCBIfam%3ATIGR02924","isocitrate dehydrogenase"],["NCBIfam%3ATIGR01344","malate synthase A"],["NCBIfam%3ANF041315","malate synthase AceB"],["NCBIfam%3ANF002825","malate synthase G"]]},{"id":"GO:0009423","l":"chorismate biosynthetic 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disulfide isomerase"]]},{"id":"GO:0050421","l":"nitrite reductase (NO-forming) activity","na":1,"nb":9,"a":[["metabolism/denitrification.html","denitrification"]],"b":[["EC%3A1.7.2.1","nitrite reductase (NO-forming)"],["RHEA%3A15233","nitric oxide + Fe(III)-[cytochrome c] + H2O = Fe(II)-[cytochrome c] + nitrite + 2 H(+)"],["GO%3A0050421","nitrite reductase (NO-forming) activity"],["NCBIfam%3ATIGR02376","copper-containing nitrite reductase"],["MCSA%3A4","nitrite reductase (copper type)"],["MCSA%3A903","nitrite reductase (cytochrome cd1 type)"]]},{"id":"GO:0052716","l":"hydroquinone:oxygen oxidoreductase activity","na":1,"nb":9,"a":[["metabolism/lignin_degradation.html","lignin degradation"]],"b":[["EC%3A1.10.3.2","laccase"],["RHEA%3A11276","4 hydroquinone + O2 = 4 benzosemiquinone + 2 H2O"],["GO%3A0052716","hydroquinone:oxygen oxidoreductase activity"],["MCSA%3A390","laccase"],["proteintraitsmech%3ABIOLIP_3DM","3DM-binding site"],["proteintraitsmech%3ABIOLIP_D2M","D2M-binding site"]]},{"id":"InterPro:IPR004090","l":"","na":1,"nb":9,"a":[["physiology/chemotaxis.html","chemotaxis"]],"b":[["Pfam%3APF05227","CHASE3 domain"],["Pfam%3APF02743","Cache domain"],["Pfam%3APF08269","Cache domain"],["Pfam%3APF18947","HAMP domain"],["Pfam%3APF18575","HAMP N-terminal domain 3"],["Pfam%3APF17909","Htr2 transmembrane domain"]]},{"id":"NCBITaxon:90371","l":"Salmonella enterica subsp. enterica serovar Typhimurium","na":1,"nb":9,"a":[["morphology/motility.html","motility"]],"b":[["IDPO%3A0000011","disorder to order"],["Pfam%3APF25869","CusB, three alpha-helical bundle domain"],["Pfam%3APF25954","CusB-like, beta-barrel domain"],["Pfam%3APF13438","Domain of unknown function (DUF4113)"],["Pfam%3APF03767","HAD superfamily, subfamily IIIB (Acid phosphatase)"],["Pfam%3APF03496","ADP-ribosyltransferase exoenzyme"]]},{"id":"UniProt:P09424","l":"","na":1,"nb":9,"a":[["physiology/chemoheterotrophic.html","chemoheterotrophic"]],"b":[["GO%3A0008926","mannitol-1-phosphate 5-dehydrogenase 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[(1->4)-N-acetyl-beta-D-glucosaminyl](n-1)-N-acetyl-alpha-D-glucosamine"],["RHEA%3A50672","[(1->4)-N-acetyl-beta-D-glucosaminyl](n) + H2O = [(1->4)-N-acetyl-beta-D-glucosaminyl](n-2) + N,N'-diacetylchitobiose"],["RHEA%3A85003","[(1->4)-N-acetyl-beta-D-glucosaminyl](n)-N-acetyl-alpha-D-glucosamine + H2O = [(1->4)-N-acetyl-beta-D-glucosaminyl](n) + N-acetyl-alpha-D-glucosamine"],["RHEA%3A10464","[(1->4)-N-acetyl-beta-D-glucosaminyl](n) + n H2O = chitosan + n acetate"]]},{"id":"DOI:10.1038/nature10453","l":"","na":1,"nb":8,"a":[["metabolism/anaerobic_ammonium_oxidation.html","anaerobic ammonium oxidation"]],"b":[["RHEA%3A49816","hydrazine + 3 Fe(III)-[cytochrome c] + H2O = nitric oxide + 3 Fe(II)-[cytochrome c] + NH4(+) + 2 H(+)"],["RHEA%3A23232","hydrazine + 4 Fe(III)-[cytochrome c] = N2 + 4 Fe(II)-[cytochrome c] + 4 H(+)"],["NCBIfam%3ANF052343","hydrazine dehydrogenase"],["NCBIfam%3ANF052339","hydrazine synthase subunit alpha"],["NCBIfam%3ANF052342","hydrazine synthase subunit beta-gamma fusion subunit"],["NCBIfam%3ANF052340","hydrazine synthase subunit beta"]]},{"id":"DOI:10.1074/jbc.M805643200","l":"","na":1,"nb":8,"a":[["metabolism/dissimilatory_sulfate_reduction.html","dissimilatory sulfate reduction"]],"b":[["RHEA%3A47008","[DsrC protein]-disulfide + hydrogen sulfide + 2 A + 3 H2O = [DsrC protein]-dithiol + sulfite + 2 AH2 + H(+)"],["RHEA%3A47012","[DsrC protein]-disulfide + hydrogen sulfide + H(+) = [DsrC protein]-S-sulfanyl-L-cysteine/L-cysteine"],["RHEA%3A47016","[DsrC protein]-S-sulfanyl-L-cysteine/L-cysteine + 2 A + 3 H2O = [DsrC protein]-dithiol + sulfite + 2 AH2 + 2 H(+)"],["RHEA%3A47020","[DsrC protein]-S-sulfanyl-L-cysteine/L-cysteine + 3 A + 3 H2O = [DsrC protein]-disulfide + sulfite + 3 AH2 + 2 H(+)"],["RHEA%3A47024","[DsrC protein]-S-sulfanyl-L-cysteine/L-cysteine + 3 A + 3 H2O = [DsrC protein]-S-sulfo-L-cysteine/L-cysteine + 3 AH2 + H(+)"],["RHEA%3A47028","[DsrC protein]-S-sulfo-L-cysteine/L-cysteine = [DsrC protein]-disulfide + sulfite + H(+)"]]},{"id":"DOI:10.1128/JB.01405-06","l":"","na":1,"nb":8,"a":[["morphology/subpolar_flagellation.html","subpolar flagellation"]],"b":[["NCBIfam%3ANF009429","flagellar basal body L-ring protein FlgH"],["NCBIfam%3ANF009430","flagellar basal body P-ring protein FlgI"],["NCBIfam%3ANF004653","flagellar basal body rod protein FlgB"],["NCBIfam%3ANF004654","flagellar basal body rod protein FlgB"],["NCBIfam%3ANF009331","flagellar basal-body rod protein FlgF"],["NCBIfam%3ANF009434","flagellar biosynthesis regulator FlaF"]]},{"id":"GO:0003868","l":"4-hydroxyphenylpyruvate dioxygenase activity","na":1,"nb":8,"a":[["morphology/brown_pigmented.html","brown pigmented"]],"b":[["EC%3A1.13.11.27","4-hydroxyphenylpyruvate dioxygenase"],["RHEA%3A16189","3-(4-hydroxyphenyl)pyruvate + O2 = homogentisate + CO2"],["GO%3A0003868","4-hydroxyphenylpyruvate dioxygenase activity"],["NCBIfam%3ATIGR01263","4-hydroxyphenylpyruvate dioxygenase"],["proteintraitsmech%3ABIOLIP_869","869-binding 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pncA"]]},{"id":"GO:0009303","l":"rRNA transcription","na":1,"nb":8,"a":[["genomics/rrna_operon_copy_number.html","rRNA operon copy number"]],"b":[["GO%3A0042791","5S class rRNA transcription by RNA polymerase III"],["GO%3A0042790","nucleolar large rRNA transcription by RNA polymerase I"],["GO%3A0042794","plastid rRNA transcription"],["GO%3A0009303","rRNA transcription"],["PANTHER%3APTHR14440","DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49"],["PANTHER%3APTHR10535","DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1"]]},{"id":"GO:0016049","l":"cell growth","na":1,"nb":8,"a":[["metabolism/metabolism.html","metabolism"]],"b":[["GO%3A0051211","anisotropic cell growth"],["GO%3A0016049","cell growth"],["GO%3A0048588","developmental cell growth"],["GO%3A0051210","isotropic cell growth"],["GO%3A0009825","multidimensional cell growth"],["GO%3A0007124","pseudohyphal growth"]]},{"id":"GO:0036374","l":"glutathione gamma-glutamate hydrolase","na":1,"nb":8,"a":[["physiology/gamma_glutamyltransferase_activity.html","gamma-glutamyltransferase activity"]],"b":[["EC%3A3.4.19.13","glutathione gamma-glutamate hydrolase"],["RHEA%3A28807","glutathione + H2O = L-cysteinylglycine + L-glutamate"],["ComplexPortal%3ACPX-325","Glutathione hydrolase complex"],["GO%3A0036374","glutathione gamma-glutamate hydrolase"],["NCBIfam%3ANF007187","gamma-glutamyltransferase"],["NCBIfam%3ATIGR00066","gamma-glutamyltransferase"]]},{"id":"GO:0042276","l":"error-prone translesion synthesis","na":1,"nb":8,"a":[["genomics/gc_content.html","GC content"]],"b":[["ComplexPortal%3ACPX-1091","DNA polymerase zeta complex"],["ComplexPortal%3ACPX-2426","DNA polymerase zeta complex"],["ComplexPortal%3ACPX-994","DNA polymerase zeta complex"],["GO%3A0042276","error-prone translesion synthesis"],["Reactome%3AR-HSA-5656121","Translesion synthesis by POLI"],["Reactome%3AR-HSA-5655862","Translesion synthesis by POLK"]]},{"id":"InterPro:IPR001492","l":"","na":1,"nb":8,"a":[["morphology/spirochete_shaped.html","spirochete shaped"]],"b":[["Pfam%3APF00700","Bacterial flagellin C-terminal helical region"],["Pfam%3APF08884","Flagellin D3 domain"],["Pfam%3APF21504","Flagellin, barrel domain"],["Pfam%3APF22370","Flagellin, beta sheet domain"],["PANTHER%3APTHR42792","FLAGELLIN"],["Pfam%3APF00669","Bacterial flagellin N-terminal helical region"]]},{"id":"InterPro:IPR050469","l":"","na":1,"nb":8,"a":[["ecology/biofilm_formation.html","biofilm formation"]],"b":[["Pfam%3APF17151","Periplasmic sensor domain"],["Pfam%3APF13682","Chemoreceptor zinc-binding domain"],["Pfam%3APF20975","DGC-associated coil"],["Pfam%3APF21118","DosC CZB-like middle domain"],["Pfam%3APF00990","Diguanylate cyclase, GGDEF domain"],["PANTHER%3APTHR45138","REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM"]]},{"id":"NCBITaxon:1352","l":"Enterococcus faecium","na":1,"nb":8,"a":[["other/catalase_negative.html","catalase negative"]],"b":[["Pfam%3APF01721","Class II bacteriocin"],["Pfam%3APF13700","Domain of unknown function (DUF4158)"],["Pfam%3APF07478","D-ala D-ala ligase C-terminus"],["Pfam%3APF01820","D-ala D-ala ligase N-terminus"],["PROSITE%3APS60030","Bacteriocin class IIa family signature"],["PROSITE%3APS00843","D-alanine--D-alanine ligase signature 1"]]},{"id":"NCBITaxon:1515","l":"Acetivibrio thermocellus","na":1,"nb":8,"a":[["metabolism/cellulolysis.html","cellulolysis"]],"b":[["Pfam%3APF02927","Cellulase N-terminal ig-like domain"],["Pfam%3APF00404","Dockerin type I domain"],["PROSITE%3APS00448","Clostridium cellulosome enzymes repeated domain signature"],["PROSITE%3APS60032","Glycosyl hydrolases family 9 (GH9) active site signature 1"],["PROSITE%3APS00592","Glycosyl hydrolases family 9 (GH9) active site signature 2"],["PROSITE%3APS00698","Glycosyl hydrolases family 9 (GH9) active site signature 3"]]},{"id":"NCBITaxon:246197","l":"Myxococcus xanthus 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alpha"]]},{"id":"NCBITaxon:272630","l":"Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1)","na":1,"nb":6,"a":[["physiology/methylotrophic.html","methylotrophic"]],"b":[["Pfam%3APF07726","ATPase family associated with various cellular activities (AAA)"],["Pfam%3APF02741","FTR, proximal lobe"],["Pfam%3APF01913","Formylmethanofuran-tetrahydromethanopterin formyltransferase"],["Pfam%3APF10677","Protein of unknown function (DUF2490)"],["Pfam%3APF08714","Formaldehyde-activating enzyme (Fae)"],["PROSITE%3APS00363","Bacterial quinoprotein dehydrogenases signature 1"]]},{"id":"NCBITaxon:316401","l":"Escherichia coli O78:H11 (strain H10407 / ETEC)","na":1,"nb":6,"a":[["other/indole_test_positive.html","indole test positive"]],"b":[["Pfam%3APF26759","AcfD helical domain"],["Pfam%3APF04449","CS1 type fimbrial major subunit"],["Pfam%3APF13322","Domain of unknown function (DUF4092)"],["PROSITE%3APS01141","Bacterial type II secretion system protein C 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AF-A0A139L295-F1-model_v4_TED04"],["TED%3AAF-A0A174QBB7-F1-model_v4_TED02","TED novel fold AF-A0A174QBB7-F1-model_v4_TED02"],["TED%3AAF-A0A679H9T4-F1-model_v4_TED03","TED novel fold AF-A0A679H9T4-F1-model_v4_TED03"]]},{"id":"GO:0000917","l":"division septum assembly","na":2,"nb":8,"a":[["morphology/sarcina_arrangement.html","sarcina arrangement"],["morphology/tetrad_arrangement.html","tetrad arrangement"]],"b":[["ComplexPortal%3ACPX-1936","Divisome complex"],["GO%3A0000917","division septum assembly"],["GO%3A0140278","mitotic division septum assembly"],["NCBIfam%3ATIGR02205","cell division protein ZipA"],["NCBIfam%3ATIGR00172","Maf family nucleotide pyrophosphatase"],["PANTHER%3APTHR36419","ARRESTIN FAMILY PROTEIN 1"]]},{"id":"GO:0061579","l":"N-acyl homoserine lactone synthase activity","na":2,"nb":8,"a":[["physiology/bioluminescence.html","bioluminescence"],["physiology/quorum_sensing.html","quorum sensing"]],"b":[["EC%3A2.3.1.184","acyl-homoserine-lactone 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5-RELATED"]]},{"id":"GO:0005840","l":"ribosome","na":1,"nb":418,"a":[["physiology/dormancy.html","dormancy"]],"b":[["ComplexPortal%3ACPX-2854","Elongation Factor eEF1 complex, variant CAM1"],["ComplexPortal%3ACPX-425","Elongation Factor eEF1 complex, variant TEF4"],["ComplexPortal%3ACPX-427","Eukaryotic translation initiation factor 2 complex"],["ComplexPortal%3ACPX-430","Eukaryotic translation initiation factor 4F complex, variant TIF4631"],["ComplexPortal%3ACPX-431","Eukaryotic translation initiation factor 4F complex, variant TIF4632"],["ComplexPortal%3ACPX-1295","MKT1-PBP1 translation regulation complex"]]},{"id":"GO:0006260","l":"DNA replication","na":1,"nb":311,"a":[["genomics/gc_skew.html","GC skew"]],"b":[["ComplexPortal%3ACPX-6641","ASCC DNA alkylation repair complex"],["ComplexPortal%3ACPX-568","Chromatin assembly factor 1 complex"],["ComplexPortal%3ACPX-2671","CMG helicase complex"],["ComplexPortal%3ACPX-297","CMG helicase complex"],["ComplexPortal%3ACPX-4526","CMG helicase complex"],["ComplexPortal%3ACPX-4541","CMG helicase complex"]]},{"id":"GO:0008800","l":"beta-lactamase activity","na":1,"nb":311,"a":[["physiology/antibiotic_resistance.html","antibiotic resistance"]],"b":[["EC%3A3.5.2.6","beta-lactamase"],["RHEA%3A20401","a beta-lactam + H2O = a substituted beta-amino acid"],["GO%3A0008800","beta-lactamase activity"],["NCBIfam%3ANF038195","AAK family class A beta-lactamase"],["NCBIfam%3ANF000397","ACC family cephalosporin-hydrolyzing class C beta-lactamase"],["NCBIfam%3ANF000448","ACI family class A beta-lactamase"]]},{"id":"GO:0006281","l":"DNA repair","na":1,"nb":272,"a":[["environment/radiotolerant.html","radiotolerant"]],"b":[["ComplexPortal%3ACPX-4426","BRCA1-B complex"],["ComplexPortal%3ACPX-4721","BRCA1-B complex"],["ComplexPortal%3ACPX-568","Chromatin assembly factor 1 complex"],["ComplexPortal%3ACPX-1959","HU complex, variant hupA"],["ComplexPortal%3ACPX-1958","HU complex, variant hupAB"],["ComplexPortal%3ACPX-863","INO80 chromatin remodeling 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process","na":1,"nb":224,"a":[["metabolism/metabolism.html","metabolism"]],"b":[["GO%3A0006666","3-keto-sphinganine metabolic process"],["GO%3A0008291","acetylcholine metabolic process"],["GO%3A0006081","aldehyde metabolic process"],["GO%3A0019330","aldoxime metabolic process"],["GO%3A0009820","alkaloid metabolic process"],["GO%3A0000255","allantoin metabolic process"]]},{"id":"NCBITaxon:99287","l":"Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)","na":1,"nb":178,"a":[["metabolism/tetrathionate_respiration.html","tetrathionate respiration"]],"b":[["Pfam%3APF16031","TonB polyproline region"],["Pfam%3APF13521","AAA domain"],["Pfam%3APF26341","tRNA 2-selenouridine synthase AAA domain"],["Pfam%3APF13427","Aminoglycoside adenylyltransferase, C-terminal domain"],["Pfam%3APF09317","Acyl-CoA dehydrogenase, C-terminal, bacterial type"],["Pfam%3APF06315","Isocitrate dehydrogenase kinase/phosphatase (AceK) kinase domain"]]},{"id":"CHEBI:15740","l":"formate","na":1,"nb":173,"a":[["metabolism/syntrophy.html","Syntrophy"]],"b":[["EC%3A1.1.98.6","ribonucleoside-triphosphate reductase (formate)"],["EC%3A1.10.3.15","grixazone synthase"],["EC%3A1.13.11.41","2,4'-dihydroxyacetophenone dioxygenase"],["EC%3A1.13.11.53","acireductone dioxygenase (Ni(2+)-requiring)"],["EC%3A1.13.11.54","acireductone dioxygenase (Fe(2+)-requiring)"],["EC%3A1.13.11.72","2-hydroxyethylphosphonate dioxygenase"]]},{"id":"GO:0016791","l":"phosphatase activity","na":1,"nb":171,"a":[["physiology/naphthol_as_bi_phosphohydrolase_activity.html","naphthol-AS-BI-phosphohydrolase activity"]],"b":[["ComplexPortal%3ACPX-120","Prostatic acid phosphatase complex"],["ComplexPortal%3ACPX-121","Prostatic acid phosphatase complex"],["GO%3A0033885","10-hydroxy-9-(phosphonooxy)octadecanoate phosphatase activity"],["GO%3A0047538","2-carboxy-D-arabinitol-1-phosphatase activity"],["GO%3A0043716","2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity"],["GO%3A0050532","2-phosphosulfolactate phosphatase activity"]]},{"id":"GO:0015979","l":"photosynthesis","na":1,"nb":146,"a":[["metabolism/photosynthesis.html","photosynthesis"]],"b":[["GO%3A0015979","photosynthesis"],["NCBIfam%3ATIGR01337","allophycocyanin subunit beta"],["NCBIfam%3ATIGR03056","alpha/beta fold hydrolase BchO"],["NCBIfam%3ANF013497","Apocytochrome F, C-terminal"],["NCBIfam%3ANF014391","Bacteriochlorophyll A protein"],["NCBIfam%3ANF058502","C-phycocyanin alpha-cysteine-84 phycocyanobilin lyase subunit CpcE"]]},{"id":"NCBITaxon:632","l":"Yersinia pestis","na":1,"nb":138,"a":[["ecology/biosafety_level_3.html","biosafety level 3"]],"b":[["Pfam%3APF09255","Caf1 Capsule antigen"],["Pfam%3APF02611","CDP-diacylglycerol pyrophosphatase"],["Pfam%3APF07411","Domain of unknown function (DUF1508)"],["Pfam%3APF05171","Haemin-degrading HemS.ChuX domain"],["Pfam%3APF21500","DNA polymerase III subunit delta', AAA+ ATPase lid domain"],["Pfam%3APF11004","3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase"]]},{"id":"NCBITaxon:71421","l":"Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)","na":1,"nb":137,"a":[["genomics/restriction_modification_system.html","restriction-modification system"]],"b":[["Pfam%3APF13521","AAA domain"],["Pfam%3APF13654","LonB-like, AAA domain"],["Pfam%3APF16326","ABC transporter C-terminal domain"],["Pfam%3APF13710","ACT domain"],["Pfam%3APF12633","Adenylate cyclase NT domain"],["Pfam%3APF26690","Adenylate cyclase, class-I, third domain"]]},{"id":"GO:0006457","l":"protein folding","na":1,"nb":129,"a":[["environment/temperature_range_high.html","temperature range high"]],"b":[["ComplexPortal%3ACPX-2156","Chaperonin-containing T-complex"],["ComplexPortal%3ACPX-2772","Chaperonin-containing T-complex"],["ComplexPortal%3ACPX-6030","Chaperonin-containing T-complex"],["ComplexPortal%3ACPX-2113","GroEL-GroES complex"],["ComplexPortal%3ACPX-1671","Prefoldin co-chaperone complex"],["ComplexPortal%3ACPX-2389","Prefoldin co-chaperone complex"]]},{"id":"GO:0030154","l":"cell differentiation","na":1,"nb":108,"a":[["morphology/heterocyst.html","heterocyst"]],"b":[["GO%3A0048657","anther wall tapetum cell differentiation"],["GO%3A0009557","antipodal cell differentiation"],["GO%3A1903498","bundle sheath cell differentiation"],["GO%3A0035051","cardiocyte differentiation"],["GO%3A0030154","cell differentiation"],["GO%3A0021533","cell differentiation in hindbrain"]]},{"id":"CHEBI:15343","l":"acetaldehyde","na":1,"nb":88,"a":[["metabolism/ethanol_fermentation.html","ethanol fermentation"]],"b":[["EC%3A1.1.1.1","alcohol dehydrogenase"],["EC%3A1.1.5.5","alcohol dehydrogenase (quinone)"],["EC%3A1.1.99.36","alcohol dehydrogenase (nicotinoprotein)"],["EC%3A1.13.11.88","isoeugenol monooxygenase"],["EC%3A1.13.12.16","nitronate monooxygenase"],["EC%3A1.2.1.10","acetaldehyde dehydrogenase (acetylating)"]]},{"id":"GO:0009307","l":"DNA restriction-modification 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kinase"]]},{"id":"CHEBI:29806","l":"fumarate(2-)","na":1,"nb":76,"a":[["metabolism/propionic_acid_fermentation.html","propionic acid fermentation"]],"b":[["EC%3A1.3.1.6","fumarate reductase (NADH)"],["EC%3A1.3.2.4","fumarate reductase (cytochrome)"],["EC%3A1.3.4.1","fumarate reductase (CoM/CoB)"],["EC%3A1.3.5.1","succinate dehydrogenase"],["EC%3A1.3.98.1","dihydroorotate oxidase (fumarate)"],["EC%3A3.7.1.14","2-hydroxy-6-oxonona-2,4-dienedioate hydrolase"]]},{"id":"GO:0004803","l":"transposase activity","na":1,"nb":73,"a":[["genomics/transposable_element.html","transposable element"]],"b":[["GO%3A0004803","transposase activity"],["NCBIfam%3ANF015365","IS1 family transposase"],["NCBIfam%3ANF033558","IS1 family transposase"],["NCBIfam%3ANF033542","IS110 family RNA-guided transposase"],["NCBIfam%3ANF033551","IS1182 family transposase"],["NCBIfam%3ANF033544","IS1249 family transposase"]]},{"id":"GO:0006413","l":"translational initiation","na":1,"nb":67,"a":[["genomics/codon_usage_bias.html","codon usage bias"]],"b":[["ComplexPortal%3ACPX-427","Eukaryotic translation initiation factor 2 complex"],["ComplexPortal%3ACPX-1831","Eukaryotic translation initiation factor 3 core complex"],["ComplexPortal%3ACPX-3482","Eukaryotic translation initiation factor 4E-Mxt complex"],["ComplexPortal%3ACPX-2666","Eukaryotic translation initiation factor 4F, EIF4A1 and EIF4G1 variant"],["ComplexPortal%3ACPX-5863","Eukaryotic translation initiation factor 4F, EIF4A1 and EIF4G1 variant"],["ComplexPortal%3ACPX-5635","Eukaryotic translation initiation factor 4F, EIF4A1 and EIF4G3 variant"]]},{"id":"GO:0006950","l":"response to stress","na":1,"nb":67,"a":[["physiology/stress_response.html","stress response"]],"b":[["GO%3A0033554","cellular response to stress"],["GO%3A0006952","defense response"],["GO%3A0033555","multicellular organismal response to stress"],["GO%3A0003299","muscle hypertrophy in response to stress"],["GO%3A0009271","phage shock"],["GO%3A0034059","response to anoxia"]]},{"id":"GO:0031012","l":"extracellular matrix","na":1,"nb":64,"a":[["ecology/biofilm_formation.html","biofilm formation"]],"b":[["ComplexPortal%3ACPX-461","155 kDa platelet multimerin complex"],["ComplexPortal%3ACPX-960","Collagen type II trimer"],["ComplexPortal%3ACPX-1749","Collagen type X trimer"],["ComplexPortal%3ACPX-2971","Collagen type X trimer"],["ComplexPortal%3ACPX-1750","Collagen type XI trimer variant 1"],["ComplexPortal%3ACPX-2975","Collagen type XI trimer variant 1"]]},{"id":"GO:0006289","l":"nucleotide-excision repair","na":1,"nb":60,"a":[["environment/uv_radiation_tolerant.html","UV radiation tolerant"]],"b":[["ComplexPortal%3ACPX-2757","CRL4-ERCC8 E3 ubiquitin ligase complex, CUL4A variant"],["ComplexPortal%3ACPX-2758","CRL4-ERCC8 E3 ubiquitin ligase complex, CUL4B variant"],["ComplexPortal%3ACPX-1837","CUL3-HRT1-ELC1-ELA1 ubiquitin ligase complex"],["ComplexPortal%3ACPX-478","ERCC1-XPF endonuclease complex"],["ComplexPortal%3ACPX-491","Ercc1-Xpf endonuclease complex"],["ComplexPortal%3ACPX-1659","General transcription factor TFIIH complex"]]},{"id":"InterPro:IPR000792","l":"Transcription regulator LuxR-like, C-terminal","na":1,"nb":59,"a":[["physiology/quorum_sensing.html","quorum sensing"]],"b":[["GO%3A0071111","cyclic-guanylate-specific phosphodiesterase activity"],["GO%3A0048031","trisaccharide binding"],["GO%3A1990451","cellular stress response to acidic pH"],["GO%3A0000023","maltose metabolic process"],["GO%3A0000160","phosphorelay signal transduction system"],["GO%3A0045913","positive regulation of carbohydrate metabolic process"]]},{"id":"CHEBI:17976","l":"","na":1,"nb":56,"a":[["metabolism/electron_transfer.html","Electron transfer"]],"b":[["EC%3A1.1.5.14","fructose 5-dehydrogenase"],["EC%3A1.1.5.2","quinoprotein glucose dehydrogenase (PQQ, quinone)"],["EC%3A1.1.5.3","glycerol-3-phosphate dehydrogenase"],["EC%3A1.1.5.5","alcohol dehydrogenase (quinone)"],["EC%3A1.10.3.11","ubiquinol oxidase (non-electrogenic)"],["EC%3A1.10.3.17","superoxide oxidase"]]},{"id":"GO:0006979","l":"response to oxidative stress","na":1,"nb":50,"a":[["physiology/oxidative_stress_response.html","oxidative stress response"]],"b":[["ComplexPortal%3ACPX-9082","19S-20S-PA28-alphabeta hybrid proteasome complex"],["ComplexPortal%3ACPX-9085","19S-20S-PA28-gamma hybrid proteasome complex"],["ComplexPortal%3ACPX-8806","20S proteasome complex"],["ComplexPortal%3ACPX-4862","Alkyl hydroperoxide reductase complex"],["ComplexPortal%3ACPX-8842","PA28-alphabeta double-capped 20S proteasome complex"],["ComplexPortal%3ACPX-9002","PA28-alphabeta single-capped 20S proteasome complex"]]},{"id":"CHEBI:16947","l":"citrate(3-)","na":1,"nb":49,"a":[["metabolism/reductive_tca_cycle.html","reductive tricarboxylic acid cycle"]],"b":[["EC%3A2.3.3.1","citrate (Si)-synthase"],["EC%3A2.3.3.16","citrate synthase (unknown stereospecificity)"],["EC%3A2.3.3.3","citrate (Re)-synthase"],["EC%3A2.3.3.8","ATP citrate synthase"],["EC%3A2.8.3.10","citrate CoA-transferase"],["EC%3A4.1.3.6","citrate (pro-3S)-lyase"]]},{"id":"NCBITaxon:243274","l":"Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)","na":1,"nb":49,"a":[["metabolism/fermentative_hydrogen_production.html","fermentative hydrogen production"]],"b":[["Pfam%3APF02829","3H domain"],["Pfam%3APF13175","AAA ATPase domain"],["Pfam%3APF01958","Aspartate dehydrogenase, C-terminal"],["Pfam%3APF05448","Acetyl xylan esterase (AXE1)"],["Pfam%3APF04509","CheC-like family"],["Pfam%3APF13690","Chemotaxis phosphatase CheX"]]},{"id":"CHEBI:16199","l":"urea","na":1,"nb":48,"a":[["physiology/urease_activity.html","urease activity"]],"b":[["EC%3A3.5.1.5","urease"],["EC%3A3.5.1.95","N-malonylurea hydrolase"],["EC%3A3.5.3.1","arginase"],["EC%3A3.5.3.10","D-arginase"],["EC%3A3.5.3.11","agmatinase"],["EC%3A3.5.3.14","amidinoaspartase"]]},{"id":"NCBITaxon:93061","l":"Staphylococcus aureus 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dioxygenase"],["EC%3A1.14.13.39","nitric-oxide synthase (NADPH)"],["EC%3A1.14.14.47","nitric-oxide synthase (flavodoxin)"],["EC%3A1.14.15.41","L-tryptophan 4-nitrase"],["EC%3A1.14.15.42","L-tyrosine 3-nitrase"],["EC%3A1.7.1.14","nitric oxide reductase [NAD(P)(+), nitrous oxide-forming]"]]},{"id":"GO:0045271","l":"respiratory chain complex I","na":1,"nb":43,"a":[["metabolism/oxidative_phosphorylation.html","Oxidative phosphorylation"]],"b":[["ComplexPortal%3ACPX-266","Mitochondrial respiratory chain complex I"],["ComplexPortal%3ACPX-577","Mitochondrial respiratory chain complex I"],["ComplexPortal%3ACPX-8628","Mitochondrial respiratory chain complex I"],["ComplexPortal%3ACPX-8638","Mitochondrial respiratory chain complex I, testis-specific variant"],["ComplexPortal%3ACPX-243","Respiratory chain complex I"],["GO%3A0045271","respiratory chain complex I"]]},{"id":"CHEBI:29036","l":"copper(2+)","na":1,"nb":40,"a":[["environment/copper_tolerant.html","copper tolerant"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_29036","requires copper(2+)"],["EC%3A1.1.9.1","alcohol dehydrogenase (azurin)"],["EC%3A1.16.3.4","cuproxidase"],["EC%3A1.17.9.1","4-methylphenol dehydrogenase (hydroxylating)"],["EC%3A1.17.9.2","(+)-pinoresinol hydroxylase"],["EC%3A1.20.9.1","arsenate reductase (azurin)"]]},{"id":"DOI:10.15252/embj.201489455","l":"","na":1,"nb":38,"a":[["genomics/brex_system.html","BREX system"]],"b":[["NCBIfam%3ANF033452","BREX-1 system adenine-specific DNA-methyltransferase PglX"],["NCBIfam%3ATIGR02687","BREX-1 system phosphatase PglZ type A"],["NCBIfam%3ANF033450","BREX-1 system phosphatase PglZ type B"],["NCBIfam%3ANF033451","BREX-2 system adenine-specific DNA-methyltransferase PglX"],["NCBIfam%3ANF033446","BREX-2 system phosphatase PglZ"],["NCBIfam%3ANF033449","BREX-3 system phosphatase PglZ"]]},{"id":"CHEBI:17272","l":"propionate","na":1,"nb":34,"a":[["metabolism/propionic_acid_fermentation.html","propionic acid 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(strain PCC 7120 / SAG 25.82 / UTEX 2576)","na":1,"nb":26,"a":[["morphology/heterocyst.html","heterocyst"]],"b":[["Pfam%3APF27270","Alr1449"],["Pfam%3APF27301","Alr2735 N-terminal domain"],["Pfam%3APF27288","Alr2735"],["Pfam%3APF21571","Arginine dihydrolase ArgZ-like, C-terminal, first region"],["Pfam%3APF21570","Arginine dihydrolase ArgZ-like, C-terminal, Rossmann fold"],["Pfam%3APF13205","Bacterial Ig-like domain"]]},{"id":"GO:0000910","l":"cytokinesis","na":1,"nb":24,"a":[["morphology/cell_length.html","cell length"]],"b":[["ComplexPortal%3ACPX-24856","GNAI1-RGS14, Gi-signalling regulatory complex"],["GO%3A0061639","Cdv-dependent cytokinesis"],["GO%3A0000911","cytokinesis by cell plate formation"],["GO%3A0000910","cytokinesis"],["GO%3A0061640","cytoskeleton-dependent cytokinesis"],["GO%3A0043093","FtsZ-dependent cytokinesis"]]},{"id":"GO:0006783","l":"heme biosynthetic process","na":1,"nb":24,"a":[["physiology/catalase_activity.html","catalase activity"]],"b":[["ComplexPortal%3ACPX-8302","ABCB10-ABCB7-FECH ABC transporter"],["GO%3A0006784","heme A biosynthetic process"],["GO%3A0006785","heme B biosynthetic process"],["GO%3A0006783","heme biosynthetic process"],["GO%3A0006786","heme C biosynthetic process"],["GO%3A0048034","heme O biosynthetic process"]]},{"id":"GO:0031412","l":"gas vesicle organization","na":1,"nb":24,"a":[["morphology/gas_vesicle.html","gas vesicle"]],"b":[["GO%3A0031412","gas vesicle organization"],["NCBIfam%3ANF041667","gas vesicle accessory protein GvpU"],["NCBIfam%3ANF046092","gas vesicle protein GvpA"],["NCBIfam%3ANF052351","gas vesicle protein GvpF"],["NCBIfam%3ANF045779","gas vesicle protein GvpG"],["NCBIfam%3ANF046090","gas vesicle protein GvpJ"]]},{"id":"CHEBI:24996","l":"lactate","na":1,"nb":23,"a":[["metabolism/lactic_acid_fermentation.html","lactic acid fermentation"]],"b":[["EC%3A1.1.1.436","lactate dehydrogenase (NAD(+),ferredoxin)"],["EC%3A3.5.1.124","protein deglycase"],["RHEA%3A57300","an N(2)-(1-hydroxy-2-oxopropyl)-2'-deoxyguanosine in DNA + H2O = a 2'-deoxyguanosine in DNA + lactate + H(+)"],["RHEA%3A57288","an N(2)-(1-hydroxy-2-oxopropyl)-guanosine in RNA + H2O = a guanosine in RNA + lactate + H(+)"],["RHEA%3A46964","lactate + 2 reduced [2Fe-2S]-[ferredoxin] + 2 NAD(+) = 2 oxidized [2Fe-2S]-[ferredoxin] + pyruvate + 2 NADH"],["RHEA%3A57244","N(2)-(1-hydroxy-2-oxopropyl)-dGTP + H2O = lactate + dGTP + H(+)"]]},{"id":"CHEBI:29242","l":"","na":1,"nb":23,"a":[["environment/arsenic_tolerant.html","arsenic tolerant"]],"b":[["EC%3A1.20.2.1","arsenate reductase (cytochrome c)"],["EC%3A1.20.4.1","arsenate reductase (glutathione/glutaredoxin)"],["EC%3A1.20.4.3","mycoredoxin"],["EC%3A1.20.4.4","arsenate reductase (thioredoxin)"],["EC%3A1.20.9.1","arsenate reductase (azurin)"],["EC%3A1.20.99.1","arsenate reductase (donor)"]]},{"id":"GO:0004563","l":"beta-N-acetylhexosaminidase 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germination"]],"b":[["GO%3A0120164","conidium germination"],["GO%3A0075226","encysted zoospore germination"],["GO%3A0009847","spore germination"],["proteintraitsmech%3ASEED_SUBSYSTEM_Spore_germination","Spore germination"],["NCBIfam%3ATIGR00912","endospore germination permease"],["NCBIfam%3ATIGR02887","Ger(x)C family spore germination protein"]]},{"id":"NCBITaxon:243230","l":"Deinococcus radiodurans R1","na":1,"nb":23,"a":[["environment/radiotolerant.html","radiotolerant"]],"b":[["Pfam%3APF07282","Cas12f1-like, TNB domain"],["Pfam%3APF26517","DNA damage response protein D family"],["Pfam%3APF07733","Bacterial DNA polymerase III alpha NTPase domain"],["Pfam%3APF17657","Bacterial DNA polymerase III alpha subunit finger domain"],["Pfam%3APF11638","DnaA N-terminal domain"],["Pfam%3APF09348","Domain of unknown function (DUF1990)"]]},{"id":"NCBITaxon:266834","l":"Rhizobium meliloti (strain 1021)","na":1,"nb":23,"a":[["ecology/nitrogen_fixing_symbiosis.html","nitrogen-fixing symbiosis"]],"b":[["Pfam%3APF13279","Thioesterase-like superfamily"],["Pfam%3APF26956","ACR family N-terminal ACT domain"],["Pfam%3APF27143","Atu0565 family"],["Pfam%3APF27488","BioS helical-like domain"],["Pfam%3APF05853","beta-keto acid cleavage enzyme"],["Pfam%3APF13746","4Fe-4S dicluster domain"]]},{"id":"CHEBI:27547","l":"zeaxanthin","na":1,"nb":22,"a":[["morphology/orange_pigmented.html","orange pigmented"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_27547","requires zeaxanthin"],["EC%3A1.13.11.65","carotenoid isomerooxygenase"],["EC%3A1.13.11.84","crocetin dialdehyde synthase"],["EC%3A1.14.15.21","zeaxanthin epoxidase"],["EC%3A1.14.15.24","beta-carotene 3-hydroxylase"],["EC%3A1.14.99.64","zeaxanthin 4-ketolase"]]},{"id":"GO:0003341","l":"cilium movement","na":1,"nb":21,"a":[["ecology/soil_dwelling.html","soil-dwelling"]],"b":[["ComplexPortal%3ACPX-8086","Nexin-dynein regulatory complex"],["ComplexPortal%3ACPX-2626","Outer dynein arm-docking complex"],["ComplexPortal%3ACPX-8161","Radial spoke complex, ciliiar variant"],["ComplexPortal%3ACPX-8163","Radial spoke complex, ciliiar variant"],["ComplexPortal%3ACPX-8162","Radial spoke complex, flagellar variant"],["GO%3A0003341","cilium movement"]]},{"id":"CHEBI:18420","l":"","na":1,"nb":20,"a":[["morphology/cell_width_small.html","cell width small"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_18420","requires magnesium(2+)"],["EC%3A4.99.1.10","magnesium dechelatase"],["EC%3A6.6.1.1","magnesium chelatase"],["EC%3A7.2.2.14","P-type Mg(2+) transporter"],["RHEA%3A52788","chlorophyll a + 2 H(+) = pheophytin a + Mg(2+)"],["RHEA%3A52792","chlorophyllide a + 2 H(+) = pheophorbide a + Mg(2+)"]]},{"id":"DOI:10.1126/science.1138140","l":"","na":1,"nb":20,"a":[["genomics/phage_defense_system.html","phage defense system"]],"b":[["InterPro%3AIPR013383","CRISPR-associated protein DxTHG, conserved site"],["InterPro%3AIPR006483","CRISPR-associated Cas3-type, HD domain"],["InterPro%3AIPR013422","CRISPR-associated protein Cas5, N-terminal"],["InterPro%3AIPR019267","CRISPR-associated protein Cas6, C-terminal"],["InterPro%3AIPR045648","CRISPR-associated protein Cas6-like, N-terminal domain"],["InterPro%3AIPR019121","CRISPR-associated protein, CXXC-CXXC domain"]]},{"id":"GO:0000725","l":"recombinational repair","na":1,"nb":20,"a":[["genomics/ploidy.html","ploidy"]],"b":[["ComplexPortal%3ACPX-2197","Exodeoxyribonuclease V complex"],["ComplexPortal%3ACPX-1732","Ku70:Ku80 complex"],["ComplexPortal%3ACPX-1993","Ku70:Ku80 complex"],["ComplexPortal%3ACPX-2047","Ku70:Ku80 complex"],["ComplexPortal%3ACPX-2048","Ku70:Ku80 complex"],["ComplexPortal%3ACPX-5124","RuvAB Holliday junction DNA helicase complex"]]},{"id":"GO:0003989","l":"acetyl-CoA carboxylase activity","na":1,"nb":20,"a":[["metabolism/three_hydroxypropionate_bicycle.html","3-hydroxypropionate bicycle"]],"b":[["EC%3A6.4.1.2","acetyl-CoA carboxylase"],["RHEA%3A11308","hydrogencarbonate + acetyl-CoA + ATP = malonyl-CoA + ADP + phosphate + H(+)"],["ComplexPortal%3ACPX-3206","Acetyl-CoA carboxylase complex"],["GO%3A0003989","acetyl-CoA carboxylase activity"],["NCBIfam%3ANF015228","Acetyl co-enzyme A carboxylase carboxyltransferase-like"],["NCBIfam%3ATIGR00531","acetyl-CoA carboxylase biotin carboxyl carrier protein"]]},{"id":"CHEBI:17057","l":"cellobiose","na":1,"nb":19,"a":[["metabolism/cellulolysis.html","cellulolysis"]],"b":[["EC%3A1.1.3.5","hexose oxidase"],["EC%3A1.1.99.18","cellobiose dehydrogenase (acceptor)"],["EC%3A2.4.1.20","cellobiose phosphorylase"],["EC%3A2.7.1.205","protein-N(pi)-phosphohistidine--D-cellobiose phosphotransferase"],["EC%3A2.7.1.85","beta-glucoside kinase"],["EC%3A5.1.3.11","cellobiose epimerase"]]},{"id":"GO:0003993","l":"acid phosphatase activity","na":1,"nb":19,"a":[["physiology/acid_phosphatase_activity.html","acid phosphatase activity"]],"b":[["EC%3A3.1.3.2","acid phosphatase"],["ComplexPortal%3ACPX-120","Prostatic acid phosphatase complex"],["ComplexPortal%3ACPX-121","Prostatic acid phosphatase complex"],["GO%3A0003993","acid phosphatase activity"],["NCBIfam%3ATIGR01672","acid phosphatase AphA"],["NCBIfam%3ANF045654","acid phosphatase PhoC"]]},{"id":"GO:0004559","l":"alpha-mannosidase activity","na":1,"nb":19,"a":[["physiology/alpha_mannosidase_activity.html","alpha-mannosidase activity"]],"b":[["EC%3A3.2.1.24","alpha-mannosidase"],["GO%3A0004559","alpha-mannosidase activity"],["GO%3A0004569","glycoprotein endo-alpha-1,2-mannosidase activity"],["GO%3A0033915","mannan 1,2-(1,3)-alpha-mannosidase activity"],["GO%3A0008496","mannan endo-1,6-alpha-mannosidase activity"],["GO%3A0033941","mannan exo-1,2-1,6-alpha-mannosidase activity"]]},{"id":"GO:0008150","l":"biological_process","na":1,"nb":19,"a":[["upper/biological_process.html","biological process"]],"b":[["GO%3A0044848","biological phase"],["GO%3A0008150","biological_process"],["GO%3A0044419","biological process involved in interspecies interaction between organisms"],["GO%3A0051703","biological process involved in intraspecies interaction between organisms"],["GO%3A0065007","biological regulation"],["GO%3A0009987","cellular process"]]},{"id":"GO:0019290","l":"siderophore biosynthetic process","na":1,"nb":19,"a":[["physiology/siderophore_production.html","siderophore production"]],"b":[["GO%3A0140614","1,8-dihydroxynaphthalene-melanin biosynthetic process"],["GO%3A0042861","achromobactin biosynthetic process"],["GO%3A0019540","catechol-containing siderophore biosynthetic process"],["GO%3A0042858","chrysobactin biosynthetic process"],["GO%3A0019539","hydroxymate-containing siderophore biosynthetic process"],["GO%3A0042864","pyochelin biosynthetic process"]]},{"id":"GO:0043885","l":"anaerobic carbon-monoxide dehydrogenase activity","na":1,"nb":19,"a":[["physiology/carboxydotrophic.html","carboxydotrophic"]],"b":[["EC%3A1.2.7.4","anaerobic carbon-monoxide dehydrogenase"],["RHEA%3A21040","CO + 2 oxidized [2Fe-2S]-[ferredoxin] + H2O = 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + 2 H(+)"],["GO%3A0043885","anaerobic carbon-monoxide dehydrogenase activity"],["NCBIfam%3ATIGR02416","aerobic carbon-monoxide dehydrogenase large subunit"],["NCBIfam%3ATIGR01702","anaerobic carbon-monoxide dehydrogenase catalytic subunit"],["NCBIfam%3ATIGR00314","CO dehydrogenase/acetyl-CoA synthase complex subunit alpha"]]},{"id":"GO:0045277","l":"respiratory chain complex IV","na":1,"nb":19,"a":[["physiology/oxidase_activity.html","oxidase activity"]],"b":[["ComplexPortal%3ACPX-1721","Mitochondrial respiratory chain complex IV, COX5A variant"],["ComplexPortal%3ACPX-1722","Mitochondrial respiratory chain complex IV, COX5B variant"],["ComplexPortal%3ACPX-6123","Mitochondrial respiratory chain complex IV"],["ComplexPortal%3ACPX-8620","Mitochondrial respiratory chain complex IV"],["ComplexPortal%3ACPX-9641","Mitochondrial respiratory chain complex IV"],["ComplexPortal%3ACPX-8621","Mitochondrial respiratory chain complex IV, testis-specific variant"]]},{"id":"GO:0045493","l":"xylan catabolic process","na":1,"nb":19,"a":[["metabolism/xylan_degradation.html","xylan degradation"]],"b":[["GO%3A2000888","arabinoxylan-containing compound catabolic process"],["GO%3A2000886","glucuronoxylan catabolic process"],["GO%3A0045493","xylan catabolic process"],["NCBIfam%3ANF042968","acetylxylan esterase AxeA1"],["NCBIfam%3ANF041579","beta-xylosidase"],["NCBIfam%3ANF042969","bifunctional acetylxylan esterase/glucomannan deacetylase AxeC2"]]},{"id":"CHEBI:16838","l":"polyphosphate","na":1,"nb":18,"a":[["environment/zinc_tolerant.html","zinc tolerant"]],"b":[["EC%3A2.7.1.63","polyphosphate--glucose phosphotransferase"],["EC%3A2.7.4.1","ATP-polyphosphate phosphotransferase"],["EC%3A2.7.4.17","3-phosphoglyceroyl-phosphate--polyphosphate phosphotransferase"],["EC%3A2.7.4.20","dolichyl-diphosphate--polyphosphate phosphotransferase"],["EC%3A2.7.4.33","AMP-polyphosphate phosphotransferase"],["EC%3A2.7.4.34","GDP-polyphosphate phosphotransferase"]]},{"id":"CHEBI:16169","l":"","na":1,"nb":17,"a":[["morphology/pigmentation.html","pigmentation"]],"b":[["EC%3A1.13.11.27","4-hydroxyphenylpyruvate dioxygenase"],["EC%3A1.13.11.5","homogentisate 1,2-dioxygenase"],["EC%3A1.14.13.18","4-hydroxyphenylacetate 1-monooxygenase"],["EC%3A1.14.13.63","3-hydroxyphenylacetate 6-hydroxylase"],["EC%3A2.5.1.115","homogentisate phytyltransferase"],["EC%3A2.5.1.116","homogentisate geranylgeranyltransferase"]]},{"id":"GO:0051701","l":"biological process involved in interaction with host","na":1,"nb":17,"a":[["ecology/plant_pathogen.html","plant pathogen"]],"b":[["GO%3A0044002","acquisition of nutrients from host"],["GO%3A0044406","adhesion of symbiont to host"],["GO%3A0051701","biological process involved in interaction with host"],["GO%3A0035891","exit from host cell"],["GO%3A0044001","migration in host"],["GO%3A0075136","response to host"]]},{"id":"GO:0106435","l":"carboxylesterase 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transporter MamN"],["NCBIfam%3ANF040998","magnetosome biogenesis transporter MamZ"]]},{"id":"UniProt:P35149","l":"","na":1,"nb":17,"a":[["morphology/spore_shaped.html","spore shaped"]],"b":[["EC%3A3.6.1.-","In phosphorus-containing anhydrides"],["GO%3A0043595","endospore cortex"],["GO%3A0042601","endospore-forming forespore"],["GO%3A0031160","spore wall"],["GO%3A0000270","peptidoglycan metabolic process"],["GO%3A0009847","spore germination"]]},{"id":"CHEBI:48828","l":"cobalt(2+)","na":1,"nb":16,"a":[["environment/cobalt_tolerant.html","cobalt tolerant"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_48828","requires cobalt(2+)"],["EC%3A1.16.99.1","[Co(II) methylated amine-specific corrinoid protein] reductase"],["EC%3A4.99.1.3","sirohydrochlorin cobaltochelatase"],["EC%3A6.6.1.2","cobaltochelatase"],["RHEA%3A65832","2 Co(II)-[dimethylamine-specific corrinoid protein] + AH2 + ATP + H2O = 2 Co(I)-[dimethylamine-specific corrinoid protein] + A + ADP + phosphate + 3 H(+)"],["RHEA%3A65816","2 Co(II)-[methylamine-specific corrinoid protein] + AH2 + ATP + H2O = 2 Co(I)-[methylamine-specific corrinoid protein] + A + ADP + phosphate + 3 H(+)"]]},{"id":"GO:0004556","l":"alpha-amylase activity","na":1,"nb":16,"a":[["metabolism/starch_degradation.html","starch degradation"]],"b":[["EC%3A3.2.1.1","alpha-amylase"],["GO%3A0004556","alpha-amylase activity"],["NCBIfam%3ANF041321","alpha-amylase MalA"],["NCBIfam%3ANF006971","alpha-amylase"],["NCBIfam%3ANF007051","alpha-amylase"],["NCBIfam%3ANF007052","alpha-amylase"]]},{"id":"GO:0004566","l":"beta-glucuronidase activity","na":1,"nb":16,"a":[["physiology/beta_glucuronidase_activity.html","beta-glucuronidase activity"]],"b":[["EC%3A3.2.1.31","beta-glucuronidase"],["RHEA%3A76111","4-methylumbelliferone beta-D-glucuronate + H2O = 4-methylumbelliferone + D-glucuronate"],["RHEA%3A17633","a beta-D-glucuronoside + H2O = D-glucuronate + an alcohol"],["RHEA%3A30475","oroxylin A 7-O-beta-D-glucuronate + H2O = oroxylin A + D-glucuronate + H(+)"],["RHEA%3A28326","wogonin 7-O-beta-D-glucuronate + H2O = wogonin + D-glucuronate + H(+)"],["GO%3A0004566","beta-glucuronidase activity"]]},{"id":"InterPro:IPR002105","l":"Dockerin type I repeat","na":1,"nb":16,"a":[["metabolism/cellulolysis.html","cellulolysis"]],"b":[["Pfam%3APF03425","Carbohydrate binding domain (family 11)"],["Pfam%3APF17996","Carbohydrate esterase 2 N-terminal"],["Pfam%3APF02927","Cellulase N-terminal ig-like domain"],["Pfam%3APF00963","Cohesin domain"],["Pfam%3APF00404","Dockerin type I domain"],["Pfam%3APF07554","FIVAR domain"]]},{"id":"DOI:10.1038/s41564-020-0777-y","l":"","na":1,"nb":15,"a":[["genomics/cbass_system.html","CBASS system"]],"b":[["NCBIfam%3ANF041116","CBASS oligonucleotide cyclase"],["NCBIfam%3ANF041117","CBASS oligonucleotide cyclase"],["NCBIfam%3ANF050171","CBASS system CD-NTase-associated NAD(+) hydrolase Cap12"],["NCBIfam%3ANF050172","CBASS system CD-NTase-associated NAD(+) hydrolase Cap12"],["NCBIfam%3ANF050170","CBASS system CD-NTase/cGAS isopeptidase Cap3"],["NCBIfam%3ANF051438","CD-NTase-associated endodeoxyribonuclease Cap4"]]},{"id":"GO:0045273","l":"respiratory chain complex II (succinate dehydrogenase)","na":1,"nb":15,"a":[["metabolism/oxidative_phosphorylation.html","Oxidative phosphorylation"]],"b":[["ComplexPortal%3ACPX-561","Mitochondrial respiratory chain complex II"],["ComplexPortal%3ACPX-562","Mitochondrial respiratory chain complex II"],["ComplexPortal%3ACPX-564","Mitochondrial respiratory chain complex II"],["ComplexPortal%3ACPX-565","Mitochondrial respiratory chain complex II"],["ComplexPortal%3ACPX-566","Mitochondrial respiratory chain complex II"],["ComplexPortal%3ACPX-8622","Mitochondrial respiratory chain complex II"]]},{"id":"GO:0045490","l":"pectin catabolic process","na":1,"nb":15,"a":[["metabolism/pectin_degradation.html","pectin degradation"]],"b":[["GO%3A0045490","pectin catabolic process"],["NCBIfam%3ANF002091","5-dehydro-4-deoxy-D-glucuronate isomerase"],["NCBIfam%3ANF025934","oligogalacturonate lyase family protein"],["NCBIfam%3ANF041904","pectate disaccharide-lyase PelW"],["NCBIfam%3ANF041903","pectate disaccharide-lyase PelX"],["NCBIfam%3ANF041898","pectate lyase PelI"]]},{"id":"InterPro:IPR028629","l":"","na":1,"nb":15,"a":[["genomics/crispr_cas_system.html","CRISPR-Cas system"]],"b":[["Pfam%3APF18470","Cas9 alpha-helical lobe domain"],["Pfam%3APF17893","CRISPR-associated endonuclease Cas9 beta-hairpin domain"],["Pfam%3APF18525","Cas9 C-terminal domain"],["Pfam%3APF21574","CRISPR-associated endonuclease Cas9, C-terminal domain"],["Pfam%3APF16595","PAM-interacting domain of CRISPR-associated endonuclease Cas9"],["Pfam%3APF18070","CRISPR-Cas9 PI domain"]]},{"id":"METPO:1000802","l":"Anaerobic respiration","na":15,"nb":1,"a":[["metabolism/anaerobic_oxidation_of_methane.html","anaerobic oxidation of methane"],["metabolism/anaerobic_respiration.html","Anaerobic respiration"],["metabolism/arsenate_respiration.html","arsenate respiration"],["metabolism/chlorate_respiration.html","chlorate respiration"],["metabolism/dimethyl_sulfoxide_respiration.html","dimethyl sulfoxide respiration"],["metabolism/dissimilatory_metal_reduction.html","dissimilatory metal reduction"]],"b":[["METPO%3A1000802","Anaerobic respiration"]]},{"id":"METPO:1002005","l":"Fermentation","na":15,"nb":1,"a":[["metabolism/acetone_butanol_ethanol_fermentation.html","acetone-butanol-ethanol fermentation"],["metabolism/butanediol_fermentation.html","2,3-butanediol fermentation"],["metabolism/butyric_acid_fermentation.html","butyric acid fermentation"],["metabolism/citrate_fermentation.html","citrate fermentation"],["metabolism/ethanol_fermentation.html","ethanol fermentation"],["metabolism/fermentation.html","Fermentation"]],"b":[["METPO%3A1002005","Fermentation"]]},{"id":"UniProt:P09373","l":"","na":1,"nb":15,"a":[["metabolism/mixed_acid_fermentation.html","mixed-acid fermentation"]],"b":[["EC%3A2.3.1.54","formate C-acetyltransferase"],["RHEA%3A11844","formate + acetyl-CoA = pyruvate + CoA"],["GO%3A0008861","formate C-acetyltransferase activity"],["NCBIfam%3ATIGR01255","formate C-acetyltransferase"],["InterPro%3AIPR019777","Formate C-acetyltransferase glycine radical, conserved site"],["CDD%3Acd01678","PFL1"]]},{"id":"DOI:10.1073/pnas.1518570113","l":"","na":1,"nb":14,"a":[["genomics/dpd_system.html","Dpd system"]],"b":[["NCBIfam%3ANF041060","DGQHR domain-containing protein DpdB"],["NCBIfam%3ANF041068","phospholipase D-like domain-containing protein DpdK"],["NCBIfam%3ANF041061","protein DpdD"],["NCBIfam%3ANF041062","protein DpdE"],["NCBIfam%3ANF041063","protein DpdF"],["NCBIfam%3ANF041064","protein DpdG"]]},{"id":"GO:0004629","l":"C-type glycerophospholipase activity","na":1,"nb":14,"a":[["physiology/lecithinase_activity.html","lecithinase activity"]],"b":[["GO%3A0004629","C-type glycerophospholipase activity"],["GO%3A0140335","GPI anchor phospholipase C activity"],["GO%3A0140324","lysophospholipase C activity"],["GO%3A0034480","phosphatidylcholine phospholipase C activity"],["GO%3A0034479","phosphatidylglycerol phospholipase C activity"],["GO%3A0004435","phosphatidylinositol-4,5-bisphosphate phospholipase C activity"]]},{"id":"GO:0009408","l":"response to heat","na":1,"nb":14,"a":[["physiology/heat_shock_response.html","heat shock response"]],"b":[["ComplexPortal%3ACPX-4887","DNA-directed RNA polymerase holoenzyme complex, SigmaH variant"],["ComplexPortal%3ACPX-636","ISW1b chromatin remodeling complex"],["GO%3A0034605","cellular response to heat"],["GO%3A0036168","filamentous growth of a population of unicellular organisms in response to heat"],["GO%3A0010286","heat acclimation"],["GO%3A0009408","response to heat"]]},{"id":"GO:0015891","l":"siderophore transport","na":1,"nb":14,"a":[["physiology/siderophore_production.html","siderophore production"]],"b":[["GO%3A0042935","achromobactin transport"],["GO%3A0042932","chrysobactin transport"],["GO%3A0042930","enterobactin transport"],["GO%3A0044718","siderophore transmembrane transport"],["GO%3A0015891","siderophore transport"],["NCBIfam%3ANF007349","catecholate siderophore receptor Fiu"]]},{"id":"GO:0090599","l":"alpha-glucosidase activity","na":1,"nb":14,"a":[["physiology/alpha_glucosidase_activity.html","alpha-glucosidase activity"]],"b":[["GO%3A0004558","alpha-1,4-glucosidase activity"],["GO%3A0090599","alpha-glucosidase activity"],["GO%3A0004135","amylo-alpha-1,6-glucosidase activity"],["GO%3A0033933","branched-dextran exo-1,2-alpha-glucosidase activity"],["GO%3A0106407","Glc2Man9GlcNAc2 oligosaccharide glucosidase activity"],["GO%3A0004573","Glc3Man9GlcNAc2 oligosaccharide glucosidase activity"]]},{"id":"UniProt:Q58256","l":"","na":1,"nb":14,"a":[["metabolism/methanogenesis.html","Methanogenesis"]],"b":[["GO%3A0050524","coenzyme-B sulfoethylthiotransferase activity"],["GO%3A0015948","methanogenesis"],["NCBIfam%3ATIGR03256","coenzyme-B sulfoethylthiotransferase subunit alpha"],["InterPro%3AIPR009047","Methyl-coenzyme M reductase, alpha subunit, C-terminal"],["InterPro%3AIPR003183","Methyl-coenzyme M reductase, alpha subunit, N-terminal"],["Pfam%3APF02745","Methyl-coenzyme M reductase alpha subunit, N-terminal domain"]]},{"id":"GO:0004781","l":"sulfate adenylyltransferase (ATP) activity","na":1,"nb":13,"a":[["metabolism/dissimilatory_sulfate_reduction.html","dissimilatory sulfate reduction"]],"b":[["EC%3A2.7.7.4","sulfate adenylyltransferase"],["RHEA%3A18133","sulfate + ATP + H(+) = adenosine 5'-phosphosulfate + diphosphate"],["ComplexPortal%3ACPX-4471","Sulfate adenylyltransferase complex"],["GO%3A0004781","sulfate adenylyltransferase (ATP) activity"],["NCBIfam%3ATIGR02034","sulfate adenylyltransferase, large subunit"],["NCBIfam%3ATIGR02039","sulfate adenylyltransferase, small subunit"]]},{"id":"GO:0016859","l":"cis-trans isomerase activity","na":1,"nb":13,"a":[["environment/temperature_delta_high.html","temperature delta high"]],"b":[["GO%3A0047466","2-chloro-4-carboxymethylenebut-2-en-1,4-olide isomerase activity"],["GO%3A0090471","9,15,9'-tri-cis-zeta-carotene isomerase activity"],["GO%3A0106365","beta-carotene isomerase activity"],["GO%3A0046608","carotenoid isomerase activity"],["GO%3A0016859","cis-trans isomerase activity"],["GO%3A0047885","farnesol 2-isomerase activity"]]},{"id":"GO:0120253","l":"hydrocarbon catabolic process","na":1,"nb":13,"a":[["metabolism/hydrocarbon_degradation.html","hydrocarbon degradation"]],"b":[["GO%3A0043448","alkane catabolic process"],["GO%3A0043451","alkene catabolic process"],["GO%3A0043454","alkyne catabolic process"],["GO%3A1900996","benzene catabolic process"],["GO%3A0018915","ethylbenzene catabolic process"],["GO%3A0019429","fluorene catabolic process"]]},{"id":"InterPro:IPR000673","l":"Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase","na":1,"nb":13,"a":[["physiology/chemotaxis.html","chemotaxis"]],"b":[["GO%3A1990827","deaminase binding"],["GO%3A0008984","protein-glutamate methylesterase activity"],["GO%3A0050568","protein-glutamine glutaminase activity"],["GO%3A0006482","protein demethylation"],["NCBIfam%3ANF001965","chemotaxis-specific protein-glutamate methyltransferase CheB"],["NCBIfam%3ANF009206","chemotaxis-specific protein-glutamate methyltransferase CheB"]]},{"id":"UniProt:P0A7G6","l":"","na":1,"nb":13,"a":[["physiology/sos_response.html","SOS response"]],"b":[["ComplexPortal%3ACPX-5544","DNA polymerase V mutasome complex"],["GO%3A0140664","ATP-dependent DNA damage sensor activity"],["NCBIfam%3ATIGR02012","recombinase RecA"],["InterPro%3AIPR020584","DNA recombination/repair protein RecA, conserved site"],["CDD%3Acd00983","RecA"],["InterPro%3AIPR020587","DNA recombination and repair protein RecA, monomer-monomer interface"]]},{"id":"DOI:10.1038/s41564-017-0051-0","l":"","na":1,"nb":12,"a":[["genomics/disarm_system.html","DISARM system"]],"b":[["NCBIfam%3ANF038323","DISARM system-associated protein DrmE"],["NCBIfam%3ANF038325","DISARM system helicase DrmA"],["NCBIfam%3ANF038326","DISARM system helicase DrmA"],["NCBIfam%3ANF038319","DISARM system phospholipase D-like protein DrmC"],["NCBIfam%3ANF038317","DISARM system SNF2-like helicase DrmD"],["NCBIfam%3ANF038318","DISARM system SNF2-like helicase DrmD"]]},{"id":"GO:0004536","l":"DNA nuclease activity","na":1,"nb":12,"a":[["physiology/dnase_activity.html","DNase activity"]],"b":[["GO%3A0004520","DNA endonuclease activity"],["GO%3A0004529","DNA exonuclease activity"],["GO%3A0004536","DNA nuclease activity"],["NCBIfam%3ANF053575","GINS-associated RecJ family nuclease"],["NCBIfam%3ANF053577","Hef-associated nuclease"],["NCBIfam%3ANF053576","RecJ family nuclease"]]},{"id":"GO:0008964","l":"phosphoenolpyruvate carboxylase activity","na":1,"nb":12,"a":[["metabolism/dicarboxylate_four_hydroxybutyrate_cycle.html","dicarboxylate/4-hydroxybutyrate cycle"]],"b":[["EC%3A4.1.1.31","phosphoenolpyruvate carboxylase"],["RHEA%3A28370","oxaloacetate + phosphate = phosphoenolpyruvate + hydrogencarbonate"],["GO%3A0008964","phosphoenolpyruvate carboxylase activity"],["NCBIfam%3ANF000584","phosphoenolpyruvate carboxylase"],["NCBIfam%3ANF012532","phosphoenolpyruvate carboxylase"],["NCBIfam%3ANF025376","phosphoenolpyruvate carboxylase"]]},{"id":"GO:0009512","l":"cytochrome b6f complex","na":1,"nb":12,"a":[["metabolism/oxygenic_photosynthesis.html","oxygenic photosynthesis"]],"b":[["GO%3A0009512","cytochrome b6f complex"],["NCBIfam%3ANF014576","cytochrome b6-f complex subunit PetG"],["NCBIfam%3ANF016971","cytochrome b6-f complex subunit PetL"],["NCBIfam%3ANF015687","cytochrome b6-f complex subunit PetN"],["NCBIfam%3ANF050003","cytochrome b6f subunit PetP"],["NCBIfam%3ANF019653","PetM family cytochrome b6-f complex subunit 7"]]},{"id":"GO:0045275","l":"respiratory chain complex III","na":1,"nb":12,"a":[["physiology/organoheterotrophic.html","organoheterotrophic"]],"b":[["ComplexPortal%3ACPX-560","Mitochondrial respiratory chain complex III"],["ComplexPortal%3ACPX-563","Mitochondrial respiratory chain complex III"],["ComplexPortal%3ACPX-567","Mitochondrial respiratory chain complex III"],["ComplexPortal%3ACPX-8730","Mitochondrial respiratory chain complex III"],["ComplexPortal%3ACPX-9308","Mitochondrial respiratory chain complex III"],["ComplexPortal%3ACPX-8737","Mitochondrial respiratory chain complex III, testis-specific variant"]]},{"id":"InterPro:IPR000780","l":"MCP methyltransferase, CheR-type","na":1,"nb":12,"a":[["physiology/chemotaxis.html","chemotaxis"]],"b":[["GO%3A0098561","methyl accepting chemotaxis protein complex"],["GO%3A0008983","protein-glutamate O-methyltransferase activity"],["NCBIfam%3ANF007902","protein-glutamate O-methyltransferase CheR"],["InterPro%3AIPR022641","Chemotaxis receptor methyltransferase CheR, N-terminal"],["InterPro%3AIPR000780","MCP methyltransferase, CheR-type"],["InterPro%3AIPR022642","MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal"]]},{"id":"NCBITaxon:882","l":"Nitratidesulfovibrio vulgaris str. Hildenborough","na":1,"nb":12,"a":[["metabolism/dissimilatory_sulfate_reduction.html","dissimilatory sulfate reduction"]],"b":[["IDPO%3A0000031","flexible C-terminal tail"],["Pfam%3APF02085","Class III cytochrome C family"],["Pfam%3APF06397","Desulfoferrodoxin, N-terminal domain"],["Pfam%3APF01880","Desulfoferrodoxin"],["Pfam%3APF12797","4Fe-4S binding domain"],["Pfam%3APF06180","Cobalt chelatase (CbiK)"]]},{"id":"UniProt:P04949","l":"","na":1,"nb":12,"a":[["morphology/flagellated.html","flagellated"]],"b":[["InterPro%3AIPR049365","Flagellin, barrel domain"],["InterPro%3AIPR046358","Flagellin, C-terminal domain"],["InterPro%3AIPR014981","Flagellin D3"],["InterPro%3AIPR001029","Flagellin, N-terminal domain"],["Pfam%3APF08884","Flagellin D3 domain"],["Pfam%3APF21504","Flagellin, barrel domain"]]},{"id":"UniProt:P23874","l":"","na":1,"nb":12,"a":[["physiology/persister_cell_formation.html","persister cell formation"]],"b":[["ComplexPortal%3ACPX-180","HipBA toxin-antitoxin complex"],["GO%3A0001217","DNA-binding transcription repressor activity"],["GO%3A0022611","dormancy process"],["GO%3A0036289","peptidyl-serine autophosphorylation"],["GO%3A0040008","regulation of growth"],["GO%3A0044010","single-species biofilm formation"]]},{"id":"CHEBI:16510","l":"","na":1,"nb":11,"a":[["metabolism/three_hydroxypropionate_bicycle.html","3-hydroxypropionate bicycle"]],"b":[["EC%3A1.1.1.298","3-hydroxypropionate dehydrogenase (NADP(+))"],["EC%3A1.1.1.59","3-hydroxypropionate dehydrogenase"],["EC%3A6.2.1.36","3-hydroxypropionyl-CoA synthase"],["RHEA%3A59432","3-hydroxypropanal + NAD(+) + H2O = 3-hydroxypropanoate + NADH + 2 H(+)"],["RHEA%3A59428","3-hydroxypropanal + NADP(+) + H2O = 3-hydroxypropanoate + NADPH + 2 H(+)"],["RHEA%3A67136","3-hydroxypropanoate + ATP + CoA = 3-hydroxypropanoyl-CoA + ADP + phosphate"]]},{"id":"CHEBI:16724","l":"4-hydroxybutyrate","na":1,"nb":11,"a":[["metabolism/three_hydroxypropionate_four_hydroxybutyrate_cycle.html","3-hydroxypropionate/4-hydroxybutyrate cycle"]],"b":[["EC%3A1.1.1.61","4-hydroxybutyrate dehydrogenase"],["EC%3A1.1.1.n11","succinic semialdehyde reductase"],["EC%3A1.1.99.24","hydroxyacid-oxoacid transhydrogenase"],["EC%3A6.2.1.40","4-hydroxybutyrate--CoA ligase (AMP-forming)"],["EC%3A6.2.1.56","4-hydroxybutyrate--CoA ligase (ADP-forming)"],["RHEA%3A24734","4-hydroxybutanoate + 2-oxoglutarate = (R)-2-hydroxyglutarate + succinate semialdehyde"]]},{"id":"GO:0004737","l":"pyruvate decarboxylase activity","na":1,"nb":11,"a":[["metabolism/ethanol_fermentation.html","ethanol fermentation"]],"b":[["EC%3A4.1.1.1","pyruvate decarboxylase"],["RHEA%3A55072","2-oxobutanoate + H(+) = propanal + CO2"],["RHEA%3A50312","2-oxopentanoate + H(+) = butanal + CO2"],["RHEA%3A54356","3-methyl-2-oxobutanoate + H(+) = 2-methylpropanal + CO2"],["RHEA%3A54360","4-methyl-2-oxopentanoate + H(+) = 3-methylbutanal + CO2"],["RHEA%3A11628","a 2-oxocarboxylate + H(+) = an aldehyde + CO2"]]},{"id":"NCBITaxon:1352","l":"Enterococcus faecium","na":1,"nb":11,"a":[["other/catalase_negative.html","catalase negative"]],"b":[["Pfam%3APF01721","Class II bacteriocin"],["Pfam%3APF13700","Domain of unknown function (DUF4158)"],["Pfam%3APF07478","D-ala D-ala ligase C-terminus"],["Pfam%3APF01820","D-ala D-ala ligase N-terminus"],["PROSITE%3APS60030","Bacteriocin class IIa family signature"],["PROSITE%3APS00843","D-alanine--D-alanine ligase signature 1"]]},{"id":"NCBITaxon:224911","l":"Bradyrhizobium diazoefficiens USDA 110","na":1,"nb":11,"a":[["morphology/subpolar_flagellation.html","subpolar flagellation"]],"b":[["Pfam%3APF00142","4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family"],["Pfam%3APF14715","N-terminal domain of cytochrome oxidase-cbb3, FixP"],["Pfam%3APF03886","ABC-type transport auxiliary lipoprotein component"],["Pfam%3APF10649","Protein of unknown function (DUF2478)"],["Pfam%3APF01924","Hydrogenase formation hypA family"],["PROSITE%3APS00882","Nickel-dependent hydrogenases b-type cytochrome subunit signature 1"]]},{"id":"NCBITaxon:470","l":"Acinetobacter baumannii","na":1,"nb":11,"a":[["ecology/opportunistic_pathogen.html","opportunistic pathogen"]],"b":[["Pfam%3APF22829","HphA C-terminal domain"],["Pfam%3APF22828","HphA N-terminal heme-binding domain"],["Pfam%3APF28205","Ciprofloxacin tolerance protein"],["Pfam%3APF19582","Solute-binding protein AdeT 1/2"],["PROSITE%3APS00337","Beta-lactamase class-D active site"],["Pfam%3APF24575","Surface lipoprotein assembly modifier, N-terminal TPR repeats"]]},{"id":"UniProt:P0A7C2","l":"","na":1,"nb":11,"a":[["physiology/sos_response.html","SOS response"]],"b":[["NCBIfam%3ATIGR00498","transcriptional repressor LexA"],["proteintraitsmech%3AMEROPS_CLEAVAGE_S24_001","repressor LexA cleavage specificity"],["CDD%3Acd06529","S24_LexA-like"],["InterPro%3AIPR039418","LexA-like"],["InterPro%3AIPR006199","LexA repressor, DNA-binding domain"],["InterPro%3AIPR015927","Peptidase S24/S26A/S26B/S26C"]]},{"id":"UniProt:P0AEK4","l":"","na":1,"nb":11,"a":[["physiology/homeoviscous_adaptation.html","homeoviscous adaptation"]],"b":[["GO%3A1902494","catalytic complex"],["GO%3A0004318","enoyl-[acyl-carrier-protein] reductase (NADH) activity"],["GO%3A0070404","NADH binding"],["GO%3A0009102","biotin biosynthetic process"],["GO%3A0030497","fatty acid elongation"],["GO%3A0008610","lipid biosynthetic process"]]},{"id":"GO:0004557","l":"alpha-galactosidase activity","na":1,"nb":10,"a":[["physiology/alpha_galactosidase_activity.html","alpha-galactosidase activity"]],"b":[["EC%3A3.2.1.22","alpha-galactosidase"],["RHEA%3A21112","a globoside Gb3Cer (d18:1(4E)) + H2O = a beta-D-Gal-(1->4)-beta-D-Glc-(1<->1)-Cer(d18:1(4E)) + D-galactose"],["RHEA%3A28663","melibiose + H2O = D-galactose + D-glucose"],["GO%3A0004557","alpha-galactosidase activity"],["GO%3A0052692","raffinose alpha-galactosidase activity"],["NCBIfam%3ANF053652","beta-L-arabinopyranosidase"]]},{"id":"GO:0008218","l":"bioluminescence","na":1,"nb":10,"a":[["physiology/bioluminescence.html","bioluminescence"]],"b":[["GO%3A0008218","bioluminescence"],["NCBIfam%3ANF052253","fatty acid reductase transferase subunit LuxD"],["NCBIfam%3ANF052244","long-chain-fatty-acid--protein ligase LuxE"],["NCBIfam%3ANF052254","luciferase subunit alpha"],["NCBIfam%3ANF052255","luciferase subunit beta"],["InterPro%3AIPR007534","Acyl-protein synthetase, LuxE"]]},{"id":"GO:0030313","l":"cell envelope","na":1,"nb":10,"a":[["metabolism/cable_bacteria_metabolism.html","Cable bacteria metabolism"]],"b":[["GO%3A0030313","cell envelope"],["PANTHER%3APTHR39576","ATTACHING AND EFFACING PROTEIN HOMOLOG-RELATED-RELATED"],["PANTHER%3APTHR38762","CRYPTIC OUTER MEMBRANE PORIN BGLH-RELATED"],["PANTHER%3APTHR41164","CURLI PRODUCTION ASSEMBLY/TRANSPORT COMPONENT CSGG"],["PANTHER%3APTHR30036","D-XYLOSE-BINDING PERIPLASMIC PROTEIN"],["PANTHER%3APTHR30532","IRON III DICITRATE-BINDING PERIPLASMIC PROTEIN"]]},{"id":"GO:0035434","l":"copper ion transmembrane transport","na":1,"nb":10,"a":[["environment/copper_tolerant.html","copper tolerant"]],"b":[["ComplexPortal%3ACPX-2254","Cus cation efflux complex"],["GO%3A0140636","copper import into the mitochondrion"],["GO%3A0140145","copper ion export from vacuole"],["GO%3A0060003","copper ion export"],["GO%3A0097430","copper ion import across prospore membrane"],["GO%3A7770057","copper ion import into Golgi lumen"]]},{"id":"GO:0046274","l":"lignin catabolic process","na":1,"nb":10,"a":[["metabolism/lignin_degradation.html","lignin degradation"]],"b":[["GO%3A1990487","anaerobic lignin catabolic process"],["GO%3A1901062","guaiacyl lignin catabolic process"],["GO%3A0046274","lignin catabolic process"],["GO%3A1901059","p-hydroxyphenyl lignin catabolic process"],["GO%3A1901065","syringal lignin catabolic process"],["NCBIfam%3ANF042997","beta-etherase"]]},{"id":"NCBITaxon:192222","l":"Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)","na":1,"nb":10,"a":[["environment/capnophilic.html","capnophilic"]],"b":[["Pfam%3APF26365","Apolipoprotein N-acyltransferase integral membrane domain"],["Pfam%3APF22131","CRISPR-associated endonuclease CjCas9 PI-CTD domain"],["Pfam%3APF22129","CRISPR-associated endonuclease CjCas9 wedge domain"],["Pfam%3APF02554","Carbon starvation protein CstA"],["Pfam%3APF27310","HrcA C-terminal domain"],["Pfam%3APF05538","Campylobacter major outer membrane protein"]]},{"id":"UniProt:P06534","l":"","na":1,"nb":10,"a":[["morphology/spore_forming.html","spore forming"]],"b":[["GO%3A0090529","cell septum assembly"],["GO%3A0051606","detection of stimulus"],["GO%3A0000160","phosphorelay signal transduction system"],["GO%3A0045881","positive regulation of sporulation resulting in formation of 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source"],["metabolism/lactic_acid_fermentation.html","lactic acid fermentation"],["metabolism/starch_degradation.html","starch degradation"]],"b":[["TCDB%3A2.A.1","The Major Facilitator Superfamily (MFS)"]]},{"id":"CHEBI:48775","l":"cadmium(2+)","na":1,"nb":9,"a":[["environment/cadmium_tolerant.html","cadmium tolerant"]],"b":[["proteintraitsmech%3ACOFACTOR_REQ_CHEBI_48775","requires cadmium(2+)"],["EC%3A7.2.2.2","ABC-type Cd(2+) transporter"],["EC%3A7.2.2.21","Cd(2+)-exporting ATPase"],["RHEA%3A12132","Cd(2+)(in) + ATP + H2O = Cd(2+)(out) + ADP + phosphate + H(+)"],["RHEA%3A28707","Cd(2+)(in) = Cd(2+)(out)"],["RHEA%3A28739","Cd(2+)(in) + H(+)(out) = Cd(2+)(out) + H(+)(in)"]]},{"id":"DOI:10.1016/S0076-6879(05)97026-2","l":"","na":1,"nb":9,"a":[["metabolism/methanogenesis.html","Methanogenesis"]],"b":[["InterPro%3AIPR009047","Methyl-coenzyme M reductase, alpha subunit, C-terminal"],["InterPro%3AIPR003183","Methyl-coenzyme M reductase, alpha subunit, 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(NO-forming)"],["RHEA%3A15233","nitric oxide + Fe(III)-[cytochrome c] + H2O = Fe(II)-[cytochrome c] + nitrite + 2 H(+)"],["GO%3A0050421","nitrite reductase (NO-forming) activity"],["NCBIfam%3ATIGR02376","copper-containing nitrite reductase"],["MCSA%3A4","nitrite reductase (copper type)"],["MCSA%3A903","nitrite reductase (cytochrome cd1 type)"]]},{"id":"GO:0052716","l":"hydroquinone:oxygen oxidoreductase activity","na":1,"nb":9,"a":[["metabolism/lignin_degradation.html","lignin degradation"]],"b":[["EC%3A1.10.3.2","laccase"],["RHEA%3A11276","4 hydroquinone + O2 = 4 benzosemiquinone + 2 H2O"],["GO%3A0052716","hydroquinone:oxygen oxidoreductase activity"],["MCSA%3A390","laccase"],["proteintraitsmech%3ABIOLIP_3DM","3DM-binding site"],["proteintraitsmech%3ABIOLIP_D2M","D2M-binding site"]]},{"id":"InterPro:IPR004090","l":"","na":1,"nb":9,"a":[["physiology/chemotaxis.html","chemotaxis"]],"b":[["Pfam%3APF05227","CHASE3 domain"],["Pfam%3APF02743","Cache domain"],["Pfam%3APF08269","Cache domain"],["Pfam%3APF18947","HAMP domain"],["Pfam%3APF18575","HAMP N-terminal domain 3"],["Pfam%3APF17909","Htr2 transmembrane domain"]]},{"id":"NCBITaxon:264203","l":"Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)","na":1,"nb":9,"a":[["metabolism/ethanol_fermentation.html","ethanol fermentation"]],"b":[["Pfam%3APF13590","Domain of unknown function (DUF4136)"],["Pfam%3APF08436","1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain"],["Pfam%3APF13288","DXP reductoisomerase C-terminal domain"],["Pfam%3APF02670","1-deoxy-D-xylulose 5-phosphate reductoisomerase"],["PROSITE%3APS01157","Class A bacterial acid phosphatases signature"],["PROSITE%3APS01320","Uncharacterized protein family UPF0067 signature"]]},{"id":"NCBITaxon:90371","l":"Salmonella enterica subsp. enterica serovar Typhimurium","na":1,"nb":9,"a":[["morphology/motility.html","motility"]],"b":[["IDPO%3A0000011","disorder to order"],["Pfam%3APF25869","CusB, three alpha-helical bundle 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domain"],["Pfam%3APF17854","FtsK alpha domain"],["Pfam%3APF09397","Ftsk gamma domain"]]},{"id":"CHEBI:17029","l":"chitin","na":1,"nb":8,"a":[["metabolism/chitinolysis.html","chitinolysis"]],"b":[["EC%3A2.4.1.16","chitin synthase"],["EC%3A3.5.1.41","chitin deacetylase"],["RHEA%3A85463","[(1->4)-N-acetyl-beta-D-glucosaminyl](n) = [(1->4)-N-acetyl-beta-D-glucosaminyl](n-1)-N-acetyl-alpha-D-glucosamine"],["RHEA%3A50672","[(1->4)-N-acetyl-beta-D-glucosaminyl](n) + H2O = [(1->4)-N-acetyl-beta-D-glucosaminyl](n-2) + N,N'-diacetylchitobiose"],["RHEA%3A85003","[(1->4)-N-acetyl-beta-D-glucosaminyl](n)-N-acetyl-alpha-D-glucosamine + H2O = [(1->4)-N-acetyl-beta-D-glucosaminyl](n) + N-acetyl-alpha-D-glucosamine"],["RHEA%3A10464","[(1->4)-N-acetyl-beta-D-glucosaminyl](n) + n H2O = chitosan + n acetate"]]},{"id":"DOI:10.1016/j.cell.2020.09.065","l":"","na":1,"nb":8,"a":[["genomics/retron_system.html","Retron system"]],"b":[["NCBIfam%3ANF038235","retron Ec48 family effector membrane 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oxidation"]],"b":[["RHEA%3A49816","hydrazine + 3 Fe(III)-[cytochrome c] + H2O = nitric oxide + 3 Fe(II)-[cytochrome c] + NH4(+) + 2 H(+)"],["RHEA%3A23232","hydrazine + 4 Fe(III)-[cytochrome c] = N2 + 4 Fe(II)-[cytochrome c] + 4 H(+)"],["NCBIfam%3ANF052343","hydrazine dehydrogenase"],["NCBIfam%3ANF052339","hydrazine synthase subunit alpha"],["NCBIfam%3ANF052342","hydrazine synthase subunit beta-gamma fusion subunit"],["NCBIfam%3ANF052340","hydrazine synthase subunit beta"]]},{"id":"DOI:10.1074/jbc.M805643200","l":"","na":1,"nb":8,"a":[["metabolism/dissimilatory_sulfate_reduction.html","dissimilatory sulfate reduction"]],"b":[["RHEA%3A47008","[DsrC protein]-disulfide + hydrogen sulfide + 2 A + 3 H2O = [DsrC protein]-dithiol + sulfite + 2 AH2 + H(+)"],["RHEA%3A47012","[DsrC protein]-disulfide + hydrogen sulfide + H(+) = [DsrC protein]-S-sulfanyl-L-cysteine/L-cysteine"],["RHEA%3A47016","[DsrC protein]-S-sulfanyl-L-cysteine/L-cysteine + 2 A + 3 H2O = [DsrC protein]-dithiol + sulfite + 2 AH2 + 2 H(+)"],["RHEA%3A47020","[DsrC protein]-S-sulfanyl-L-cysteine/L-cysteine + 3 A + 3 H2O = [DsrC protein]-disulfide + sulfite + 3 AH2 + 2 H(+)"],["RHEA%3A47024","[DsrC protein]-S-sulfanyl-L-cysteine/L-cysteine + 3 A + 3 H2O = [DsrC protein]-S-sulfo-L-cysteine/L-cysteine + 3 AH2 + H(+)"],["RHEA%3A47028","[DsrC protein]-S-sulfo-L-cysteine/L-cysteine = [DsrC protein]-disulfide + sulfite + H(+)"]]},{"id":"DOI:10.1128/JB.01405-06","l":"","na":1,"nb":8,"a":[["morphology/subpolar_flagellation.html","subpolar flagellation"]],"b":[["NCBIfam%3ANF009429","flagellar basal body L-ring protein FlgH"],["NCBIfam%3ANF009430","flagellar basal body P-ring protein FlgI"],["NCBIfam%3ANF004653","flagellar basal body rod protein FlgB"],["NCBIfam%3ANF004654","flagellar basal body rod protein FlgB"],["NCBIfam%3ANF009331","flagellar basal-body rod protein FlgF"],["NCBIfam%3ANF009434","flagellar biosynthesis regulator FlaF"]]},{"id":"GO:0003868","l":"4-hydroxyphenylpyruvate dioxygenase 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content"]],"b":[["ComplexPortal%3ACPX-1091","DNA polymerase zeta complex"],["ComplexPortal%3ACPX-2426","DNA polymerase zeta complex"],["ComplexPortal%3ACPX-994","DNA polymerase zeta complex"],["GO%3A0042276","error-prone translesion synthesis"],["Reactome%3AR-HSA-5656121","Translesion synthesis by POLI"],["Reactome%3AR-HSA-5655862","Translesion synthesis by POLK"]]},{"id":"InterPro:IPR001492","l":"","na":1,"nb":8,"a":[["morphology/spirochete_shaped.html","spirochete shaped"]],"b":[["Pfam%3APF00700","Bacterial flagellin C-terminal helical region"],["Pfam%3APF08884","Flagellin D3 domain"],["Pfam%3APF21504","Flagellin, barrel domain"],["Pfam%3APF22370","Flagellin, beta sheet domain"],["PANTHER%3APTHR42792","FLAGELLIN"],["Pfam%3APF00669","Bacterial flagellin N-terminal helical region"]]},{"id":"InterPro:IPR050469","l":"","na":1,"nb":8,"a":[["ecology/biofilm_formation.html","biofilm formation"]],"b":[["Pfam%3APF17151","Periplasmic sensor domain"],["Pfam%3APF13682","Chemoreceptor 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low"],["environment/stenohaline.html","stenohaline"]],"b":[["proteintraitsmech%3ABIOLIP_2BA","2BA-binding site"]]},{"id":"DOI:10.1038/s41579-019-0299-x","l":"","na":1,"nb":6,"a":[["genomics/crispr_cas_system.html","CRISPR-Cas system"]],"b":[["NCBIfam%3ANF041225","type III-E CRISPR-associated gRAMP effector Cas7-11e"],["NCBIfam%3ANF041236","type III-E CRISPR-associated RpoE-like sigma factor"],["NCBIfam%3ANF041237","type III-E CRISPR-associated TPR-CHAT protein Csx29"],["NCBIfam%3ANF049948","type III-G CRISPR-associated protein Csx26"],["NCBIfam%3ANF038192","type V CRISPR-associated protein C2c8"],["NCBIfam%3ANF038189","type VI-D CRISPR-associated RNA-guided ribonuclease Cas13d"]]},{"id":"DOI:10.1038/s41586-019-1605-5","l":"","na":1,"nb":6,"a":[["genomics/cbass_system.html","CBASS system"]],"b":[["NCBIfam%3ANF041079","CBASS cGAMP-activated phospholipase"],["NCBIfam%3ANF041078","CBASS cGAMP synthase"],["NCBIfam%3ANF041116","CBASS oligonucleotide cyclase"],["NCBIfam%3ANF041117","CBASS 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All nine Mechs, their shared vocabulary and cross-references, and the culturebotai-claw orchestrator -- **[CultureMech](/culturemech/)** - Single-organism media requirements (6,286 canonical media) -- **[MediaIngredientMech](/mediaingredientmech/)** - LLM-assisted ingredient curation +- **[X-Mech Suite overview](/mechs/)** - All ten Mechs, their shared vocabulary and cross-references, and the culturebotai-claw orchestrator +- **[TaxonMech](https://culturebotai.github.io/TaxonMech/)** - Microbial taxa and strains grounded in NCBI Taxonomy, harmonized with GTDB, LPSN and BacDive +- **[HabitatMech](https://culturebotai.github.io/HabitatMech/)** - Habitats harmonized from GOLD, BacDive, PREGO and Madin et al. into ENVO-grounded records - **[TraitMech](https://culturebotai.github.io/TraitMech/)** - Microbial ecophysiological trait knowledge base +- **[CellStructureMech](https://culturebotai.github.io/CellStructureMech/)** - Microbial cell structures, between the trait and protein layers - **[ProteinTraitsMech](https://culturebotai.github.io/proteintraitsmech/)** - Protein sequence, structure, and function traits +- **[NaturalProductMech](https://culturebotai.github.io/NaturalProductMech/)** - Natural product structures with their producer organisms and gene clusters +- **[AntibioticMech](https://culturebotai.github.io/AntibioticMech/)** - Antimicrobial structures harmonizing ChEBI and CARD/ARO +- **[MediaIngredientMech](/mediaingredientmech/)** - LLM-assisted ingredient curation +- **[CultureMech](/culturemech/)** - Single-organism media requirements (6,286 canonical media) - **[PFASCommunityAgents](/resources/#pfascommunityagents)** - AI-driven consortium design for PFAS biodegradation - **[kg-microbe](/kg-microbe/)** - Central knowledge graph (864K+ species) - **[MicroGrowAgents](/microgrowagents/)** - Multi-agent media design system diff --git a/culturemech.md b/culturemech.md index 6eeb250..a3ddc68 100644 --- a/culturemech.md +++ b/culturemech.md @@ -209,11 +209,16 @@ kg.export(format="json", output="media_data.json") ## Related Tools -- **[X-Mech Suite overview](/mechs/)** - All nine Mechs, their shared vocabulary and cross-references, and the culturebotai-claw orchestrator -- **[MediaIngredientMech](/mediaingredientmech/)** - LLM-assisted ingredient ontology mapping +- **[X-Mech Suite overview](/mechs/)** - All ten Mechs, their shared vocabulary and cross-references, and the culturebotai-claw orchestrator +- **[TaxonMech](https://culturebotai.github.io/TaxonMech/)** - Microbial taxa and strains grounded in NCBI Taxonomy, harmonized with GTDB, LPSN and BacDive +- **[HabitatMech](https://culturebotai.github.io/HabitatMech/)** - Habitats harmonized from GOLD, BacDive, PREGO and Madin et al. into ENVO-grounded records - **[CommunityMech](/communitymech/)** - Microbial community interaction modeling - **[TraitMech](https://culturebotai.github.io/TraitMech/)** - Microbial ecophysiological trait knowledge base +- **[CellStructureMech](https://culturebotai.github.io/CellStructureMech/)** - Microbial cell structures, between the trait and protein layers - **[ProteinTraitsMech](https://culturebotai.github.io/proteintraitsmech/)** - Protein sequence, structure, and function traits +- **[NaturalProductMech](https://culturebotai.github.io/NaturalProductMech/)** - Natural product structures with their producer organisms and gene clusters +- **[AntibioticMech](https://culturebotai.github.io/AntibioticMech/)** - Antimicrobial structures harmonizing ChEBI and CARD/ARO +- **[MediaIngredientMech](/mediaingredientmech/)** - LLM-assisted ingredient ontology mapping - **[MicroMediaParam](/resources/#micromediaparam)** - Chemical compound standardization and ChEBI mapping - **[kg-microbe](/kg-microbe/)** - Central knowledge graph for microbial cultivation diff --git a/index.md b/index.md index a48d6da..77ebc4f 100644 --- a/index.md +++ b/index.md @@ -34,7 +34,7 @@ The comprehensive modular knowledge graph that powers CultureBotAI, developed by Read our peer-reviewed *GigaScience* paper by Dr. Marcin P. Joachimiak detailing the development and applications of the KG-Microbe knowledge graph. ### 🤖 [AI Curation Tools — X-Mech Suite](/mechs/) -The [X-Mech suite](/mechs/) is a fleet of ten ontology-grounded knowledge bases ([CultureMech](/culturemech/), [MediaIngredientMech](/mediaingredientmech/), [CommunityMech](/communitymech/), [TraitMech](https://culturebotai.github.io/TraitMech/), [ProteinTraitsMech](https://culturebotai.github.io/proteintraitsmech/), [AntibioticMech](https://culturebotai.github.io/AntibioticMech/), [CellStructureMech](https://culturebotai.github.io/CellStructureMech/), [HabitatMech](https://culturebotai.github.io/HabitatMech/), [NaturalProductMech](https://culturebotai.github.io/NaturalProductMech/), [TaxonMech](https://culturebotai.github.io/TaxonMech/)) that describe a microbe from taxon identity and habitat to culture medium, with 10,657 published media recipes, 630 ecophysiological traits, 408,978 protein traits, 3,115 natural product structures, 2,939 antimicrobial structures, 3,206 habitats and 625,960 taxon records, coordinated by the culturebotai-claw orchestrator. +The [X-Mech suite](/mechs/) is a fleet of ten ontology-grounded knowledge bases ([CultureMech](/culturemech/), [MediaIngredientMech](/mediaingredientmech/), [CommunityMech](/communitymech/), [TraitMech](https://culturebotai.github.io/TraitMech/), [ProteinTraitsMech](https://culturebotai.github.io/proteintraitsmech/), [AntibioticMech](https://culturebotai.github.io/AntibioticMech/), [CellStructureMech](https://culturebotai.github.io/CellStructureMech/), [HabitatMech](https://culturebotai.github.io/HabitatMech/), [NaturalProductMech](https://culturebotai.github.io/NaturalProductMech/), [TaxonMech](https://culturebotai.github.io/TaxonMech/)) that describe a microbe from taxon identity and habitat to culture medium, with 6,286 canonical media, 2,951 curated ingredients, 379 communities, 696 ecophysiological traits, 421 cell structures, 429,291 protein traits, 3,115 natural product structures, 2,939 antimicrobial structures, 3,206 habitats and 625,960 taxon records, coordinated by the [culturebotai-claw](https://github.com/CultureBotAI/culturebotai-claw) orchestrator. ### 🧠 [MicroGrowAgents](/microgrowagents/) Multi-agent AI system for microbial cultivation and growth media design across 864,363 validated species — [GitHub repository](https://github.com/CultureBotAI/MicroGrowAgents) *(private repository — public release planned)* · [bioRxiv preprint](https://doi.org/10.64898/2026.06.04.729985) diff --git a/mechs.md b/mechs.md index 8fb53bf..c53ad7c 100644 --- a/mechs.md +++ b/mechs.md @@ -351,9 +351,9 @@ The X-Mech suite is a fleet of 10 curated, ontology-grounded knowledge bases tha
10Mech knowledge bases
-
1,059,170curated entries across the fleet
+
1,075,244curated entries across the fleet
45vocabularies in dated census
-
2,778merged PRs
+
2,994merged PRs
1orchestrator (claw)
@@ -376,7 +376,7 @@ The X-Mech suite is a fleet of 10 curated, ontology-grounded knowledge bases tha
-

This vocabulary census covers 9 of the 10 Mechs; TaxonMech is a fleet member whose vocabulary has not yet been measured, so it has no row. Counts are prefix occurrences in the canonical record directories (merged recipes for CultureMech, communities for CommunityMech, habitat records for HabitatMech) as of 15 September 2026. Columns are ordered by how many Mechs ground anything in each vocabulary, then by the total records citing it across the fleet; PMID and DOI sit at the right because every Mech cites literature. ChEBI binds the chemistry arm (media, ingredients, antibiotics, proteins); NCBITaxon and ENVO bind the organism arm (habitat, community, traits); GO and METPO bridge phenotype, structure and protein.

+

This vocabulary census covers 9 of the 10 Mechs; TaxonMech is a fleet member whose vocabulary has not yet been measured, so it has no row. Counts are prefix occurrences in the canonical record directories (merged recipes for CultureMech, communities for CommunityMech, habitat records for HabitatMech) as of 20 September 2026. Columns are ordered by how many Mechs ground anything in each vocabulary, then by the total records citing it across the fleet; PMID and DOI sit at the right because every Mech cites literature. ChEBI binds the chemistry arm (media, ingredients, antibiotics, proteins); NCBITaxon and ENVO bind the organism arm (habitat, community, traits); GO and METPO bridge phenotype, structure and protein.

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Adopting it applies here and is the more valuable direction: teach environment_coverage_dashboard.py to treat habitat records as the reference the other corpora are measured against.","reason_claims":{"present":["claw:scripts/environment_coverage_dashboard.py"]}},"knowledge_gap_scan":{"status":"disabled","reason":"Records carry the shared Discussion section, so the scan applies. The workflow matrix is generated from this manifest, so enabling the capability here with a settings.window is what adds the repository to it. Left disabled until HabitatMech has run the scan once locally and chosen its window."},"vendored_sync":{"status":"enabled"},"corpus_statistics":{"status":"enabled","settings":{"fields":["habitat_category","grounding_status","mapping_status"]}},"page_budgets":{"status":"disabled","reason":"Serves 3,404 published HTML pages under pages/ straight from main via GitHub Pages -- it has no generate-pages.yaml -- and declares no size or file-count budgets, so nothing watches them grow. Adopting them applies here; the limits are the repository's to set.","reason_claims":{"present":["pages"],"absent":[".github/workflows/generate-pages.yaml"]}},"writer_audit":{"status":"disabled","reason":"Has no scripts/audit_writers.py. Its writers exist (write_validated_habitat and record_curation_event in the seeder) and records are seeded as build products, so there is drift to audit; adopting it applies here once the audit is written.","reason_claims":{"absent":["scripts/audit_writers.py"]}},"sssom_export":{"status":"disabled","reason":"Grounds each habitat inline on the record (ENVO, UBERON, FOODON, BTO) and keeps its ontology requests as curation/term_requests.tsv rather than publishing a mapping set; there is no SSSOM file for this contract to judge. Adopting one would apply here.","reason_claims":{"present":["curation/term_requests.tsv"]}},"metpo_proposal":{"status":"disabled","reason":"Habitats are grounded in ENVO and the repository raises its gaps through term requests rather than METPO cohorts, so it has no proposals directory. Adopting applies once a habitat-associated phenotype needs a METPO term.","reason_claims":{"absent":["proposals"]}},"kgx_export":{"status":"disabled","reason":"Consumes kg-microbe's KGX as an input -- conf/sources.yaml names the checkout that supplies ENVO, UBERON, FOODON and BTO -- and publishes habitat records, not a graph. Adopting KGX would apply here only if it starts emitting nodes and edges.","reason_claims":{"present":["conf/sources.yaml"]}},"source_queue":{"status":"disabled","reason":"Has no curation/source_queue.tsv; its sources are declared in conf/sources.yaml and the raw payloads in data/raw/MANIFEST.yaml. AntibioticMech wrote the pattern and CellStructureMech adapted it; adopting it here means ranking candidate habitat sources and verifying their licences, which is curation work rather than a file copy.","reason_claims":{"present":["conf/sources.yaml","data/raw/MANIFEST.yaml"],"absent":["curation/source_queue.tsv"]}},"site_contract":{"status":"disabled","reason":"Publishes 3,404 HTML pages under pages/ straight from main, so the check has a directory to judge, but it has not been measured on this site yet. Enable after measuring on joining, as AntibioticMech did, so the contract's numbers keep describing what it runs on.","reason_claims":{"present":["pages"]}},"source_catalogue":{"status":"disabled","reason":"Declares its sources in conf/sources.yaml and the fetched payloads in data/raw/MANIFEST.yaml rather than a download.yaml in the fleet's catalogue shape; there is no download.yaml to parse. Converging on one shape is open.","reason_claims":{"present":["conf/sources.yaml","data/raw/MANIFEST.yaml"],"absent":["download.yaml"]}},"unmapped_inventory_input":{"status":"not_applicable","reason":"The unmapped-ingredient inventory reads culture-media and ingredient corpora; HabitatMech curates habitats and has no ingredient records, so scripts/inventory_unmapped_ingredients.py defines no loader for it.","reason_claims":{"present":["claw:scripts/inventory_unmapped_ingredients.py"]}}}},"NaturalProductMech":{"key":"naturalproductmech","github":"CultureBotAI/NaturalProductMech","capabilities":{"id_label_validation":{"status":"enabled"},"curation_history":{"status":"disabled","reason":"Vendors the governed curation-history schema and carries a new-history recipe, but has no history directory yet, so no record can append an event. Adopting applies once the tree exists and the recipe is wired into CI.","reason_claims":{"absent":["history"]}},"strict_validation":{"status":"enabled"},"schema_sync":{"status":"enabled"},"release_management":{"status":"enabled"},"build_coordination":{"status":"enabled"},"documentation":{"status":"enabled"},"testing":{"status":"enabled"},"refactoring":{"status":"enabled"},"coordination_hooks":{"status":"enabled"},"deep_research":{"status":"disabled","reason":"No conf/deep_research_provider.yaml and no research recipe; sources are assessed through the source queue. Adopting applies once a provider profile exists under claw's contract.","reason_claims":{"absent":["conf/deep_research_provider.yaml"]}},"edison_key_discovery":{"status":"not_applicable","reason":"NaturalProductMech does not use an Edison research-provider key; it has no research provider integration at all."},"environment_coverage":{"status":"not_applicable","reason":"Environment coverage compares culture media, ingredients and microbial communities. A natural-product structure corpus is not one of those inputs."},"knowledge_gap_scan":{"status":"disabled","reason":"Records do not carry the shared Discussion section the scan reads, and this repository is not in the knowledge-gap-scan workflow matrix. Enable once records carry it."},"vendored_sync":{"status":"enabled"},"corpus_statistics":{"status":"enabled","settings":{"fields":["np_pathway","np_classification","grounding_status","curation_status"]}},"page_budgets":{"status":"disabled","reason":"Serves tracked pages under pages/ straight from main via GitHub Pages and declares no size or file-count budgets, so no conf/pages_budgets.json exists for the audit to read.","reason_claims":{"present":["pages"],"absent":["conf/pages_budgets.json"]}},"writer_audit":{"status":"disabled","reason":"Has no scripts/audit_writers.py, so there is no drift between writer copies to remove yet. Adopting it applies here once the corpus is edited by more than one writer.","reason_claims":{"absent":["scripts/audit_writers.py"]}},"sssom_export":{"status":"disabled","reason":"Records carry ChEBI, NPAtlas and PubChem identifiers inline rather than through a mapping file. Adopting SSSOM applies once a mapping product exists."},"metpo_proposal":{"status":"disabled","reason":"No proposals directory and no METPO grounding; structures are grounded in ChEBI. Adopting applies once a natural-product phenotype needs a METPO term.","reason_claims":{"absent":["proposals"]}},"kgx_export":{"status":"disabled","reason":"No exporter and no graph product yet; adopting KGX applies once the corpus is consumed as a graph."},"source_queue":{"status":"enabled","settings":{"queue_path":"curation/source_queue.tsv","extensions":["structures"]}},"site_contract":{"status":"enabled","settings":{"site_path":"pages"}},"source_catalogue":{"status":"disabled","reason":"Keeps its ranked source list as curation/source_queue.tsv and fetches each adopted source through its own extract recipe; there is no download.yaml for the catalogue check to read. Adopting means deriving the machine-fetchable half from the queue.","reason_claims":{"present":["curation/source_queue.tsv"],"absent":["download.yaml"]}},"unmapped_inventory_input":{"status":"not_applicable","reason":"The unmapped inventory reconciles ingredient names across media corpora; natural-product structures are not one of its inputs."}}},"TaxonMech":{"key":"taxonmech","github":"CultureBotAI/TaxonMech","capabilities":{"id_label_validation":{"status":"enabled"},"curation_history":{"status":"enabled"},"strict_validation":{"status":"enabled"},"schema_sync":{"status":"enabled"},"release_management":{"status":"enabled"},"build_coordination":{"status":"enabled"},"documentation":{"status":"enabled"},"testing":{"status":"enabled"},"refactoring":{"status":"enabled"},"coordination_hooks":{"status":"enabled"},"deep_research":{"status":"disabled","reason":"Vendors scripts/deep_research_contract.py but has no conf/deep_research_provider.yaml or provider recipe. Enable once a research provider is configured and exercised under the shared contract.","reason_claims":{"present":["scripts/deep_research_contract.py"],"absent":["conf/deep_research_provider.yaml"]}},"edison_key_discovery":{"status":"not_applicable","reason":"TaxonMech has no Edison integration or Edison research-provider key."},"environment_coverage":{"status":"not_applicable","reason":"Environment coverage compares culture media, ingredients and microbial communities; taxon identity records are not one of its inputs."},"knowledge_gap_scan":{"status":"disabled","reason":"The schema supports Discussion but no shared scan window or workflow is configured. Enable after adding a durable curated overlay that the generated-corpus pipeline preserves and wiring the scanner to it."},"vendored_sync":{"status":"enabled"},"corpus_statistics":{"status":"enabled","settings":{"fields":["taxon_domain","rank","grounding_status","mapping_status"]}},"page_budgets":{"status":"disabled","reason":"Publishes tracked pages under pages/ but has no conf/pages_budgets.json. Enable once explicit size and file-count budgets are configured and measured.","reason_claims":{"present":["pages"],"absent":["conf/pages_budgets.json"]}},"writer_audit":{"status":"disabled","reason":"Has no scripts/audit_writers.py. Records use a native seeder and validated writer, but no shared audit profile has been adopted. Enable after configuring the profile and measuring its writer coverage.","reason_claims":{"absent":["scripts/audit_writers.py"]}},"sssom_export":{"status":"disabled","reason":"Stores taxonomy mappings and cross-references inline; no SSSOM mapping product is emitted. Enable once a validated export exists."},"metpo_proposal":{"status":"disabled","reason":"The schema references METPO but there is no proposals/ directory or proposal cohort. Enable once the repository produces terms under the shared proposal contract.","reason_claims":{"absent":["proposals"]}},"kgx_export":{"status":"disabled","reason":"Consumes kg-microbe KGX as an input but does not emit a graph product. Enable when an exporter produces validated nodes and edges."},"source_queue":{"status":"disabled","reason":"Sources are configured in conf/sources.yaml and inventoried in data/raw/MANIFEST.yaml; no curation/source_queue.tsv ranks candidate sources. Enable once that review queue is adopted.","reason_claims":{"present":["conf/sources.yaml","data/raw/MANIFEST.yaml"],"absent":["curation/source_queue.tsv"]}},"site_contract":{"status":"enabled","settings":{"site_path":"pages"}},"source_catalogue":{"status":"disabled","reason":"Uses conf/sources.yaml and data/raw/MANIFEST.yaml but has no download.yaml in the shared catalogue shape. Enable after adapting the source declarations to that contract.","reason_claims":{"present":["conf/sources.yaml","data/raw/MANIFEST.yaml"],"absent":["download.yaml"]}},"unmapped_inventory_input":{"status":"not_applicable","reason":"The unmapped inventory reconciles ingredient names across media corpora; taxon identity records are not one of its inputs."}}}},"artifact_count":16}; var MECHS = { - HabitatMech: { key: "habitatmech", scale: "Habitat", tag: "Four habitat vocabularies harmonized into ENVO-grounded records that keep every source's attestation.", records: 3206, unit: "habitat records", root: "HabitatRecord", vocab: ["ENVO", "NCBITaxon", "BTO", "UBERON", "FOODON"], github: "https://github.com/CultureBotAI/HabitatMech", site: "https://culturebotai.github.io/HabitatMech/", page: "", license: "CC0-1.0", sources: "JGI GOLD ecosystem paths, BacDive isolation sources, PREGO, Madin et al.; ENVO/UBERON/FOODON/BTO via kg-microbe", extra: "684 curator-reviewed; 2,150 ontology-grounded; 176 corroborated by two or more sources. Browse habitat records or explore the semantic text map." }, - CommunityMech: { key: "communitymech", scale: "Community", tag: "Curated knowledge base of microbial communities, their interactions, cultivation and evidence.", records: 374, unit: "community records", root: "MicrobialCommunity", vocab: ["NCBITaxon", "CHEBI", "GO", "ENVO", "GTDB"], github: "https://github.com/CultureBotAI/CommunityMech", site: "https://culturebotai.github.io/CommunityMech/", page: "/communitymech/", license: "BSD-3-Clause", sources: "PubMed literature, GTDB, IMG, BioModels, CultureMech media, MediaIngredientMech ingredients", extra: "374 communities across 16 categories, with faceted record browsing, a PaCMAP embedding browser and a graph layout." }, + HabitatMech: { key: "habitatmech", scale: "Habitat", tag: "Four habitat vocabularies harmonized into ENVO-grounded records that keep every source's attestation.", records: 3206, unit: "habitat records", root: "HabitatRecord", vocab: ["ENVO", "NCBITaxon", "BTO", "UBERON", "FOODON"], github: "https://github.com/CultureBotAI/HabitatMech", site: "https://culturebotai.github.io/HabitatMech/", page: "", license: "CC0-1.0", sources: "JGI GOLD ecosystem paths, BacDive isolation sources, PREGO, Madin et al.; ENVO/UBERON/FOODON/BTO via kg-microbe", extra: "686 curator-reviewed; 2,151 ontology-grounded; 176 corroborated by two or more sources. Browse habitat records or explore the semantic text map." }, + CommunityMech: { key: "communitymech", scale: "Community", tag: "Curated knowledge base of microbial communities, their interactions, cultivation and evidence.", records: 379, unit: "community records", root: "MicrobialCommunity", vocab: ["NCBITaxon", "CHEBI", "GO", "ENVO", "GTDB"], github: "https://github.com/CultureBotAI/CommunityMech", site: "https://culturebotai.github.io/CommunityMech/", page: "/communitymech/", license: "BSD-3-Clause", sources: "PubMed literature, GTDB, IMG, BioModels, CultureMech media, MediaIngredientMech ingredients", extra: "379 communities across 16 categories, with faceted record browsing, a PaCMAP embedding browser and a graph layout." }, TaxonMech: { key: "taxonmech", scale: "Taxa and strains", tag: "Microbial taxa and strains identified by NCBI Taxonomy and harmonized with GTDB, LPSN and BacDive.", records: 625960, unit: "taxon records", root: "TaxonRecord", vocab: ["NCBITaxon", "GTDB", "LPSN", "BacDive", "NCBI Assembly"], github: "https://github.com/CultureBotAI/TaxonMech", site: "https://culturebotai.github.io/TaxonMech/", page: "", license: "CC0-1.0", sources: "NCBI Taxonomy, GTDB, LPSN, BacDive, MediaDive, GOLD, Madin and BactoTraits through kg-microbe transforms", extra: "625,960 taxa, 100,745 distinct listed strains and 20,648 taxa with a type strain. Dedicated browsers expose StrainInfo deposits and AllTheBacteria assemblies with their evidence." }, - TraitMech: { key: "traitmech", scale: "Traits", tag: "Microbial ecophysiological trait knowledge base, seeded from METPO, one curated YAML per trait.", records: 630, unit: "trait records", root: "TraitRecord", vocab: ["METPO", "GO", "NCBITaxon", "CHEBI", "UniProt"], github: "https://github.com/CultureBotAI/TraitMech", site: "https://culturebotai.github.io/TraitMech/", page: "", license: "CC0-1.0", sources: "METPO (vendored OWL), GapMind and GTDB genome tables as candidates", extra: "630 traits across 10 categories; 75.7% embedded. Browse definitions, causal graphs, kg-microbe matches and nearest neighbors, or explore PaCMAP and graph layouts." }, - CellStructureMech: { key: "cellstructuremech", scale: "Cell structures", tag: "Ontology-grounded microbial cell structures: components, distribution, function and causal mechanism.", records: 360, unit: "structure records", root: "CellStructureRecord", vocab: ["GO", "NCBITaxon", "UniProt", "METPO", "Pfam"], github: "https://github.com/CultureBotAI/CellStructureMech", site: "https://culturebotai.github.io/CellStructureMech/", page: "", license: "CC0-1.0", sources: "GO cellular component, UniProt subcellular location, Complex Portal, EMDB/EMPIAR, PDB, TraitMech", extra: "360 structures across 13 categories, including 167 membrane organelles; 306 records are GO-grounded. Browse by category, kind and grounding status." }, - ProteinTraitsMech: { key: "proteintraitsmech", scale: "Proteins", tag: "Protein sequence, structure and function trait classes, one curated YAML per trait, evidence-backed.", records: 408978, unit: "protein trait records", root: "ProteinTraitRecord", vocab: ["InterPro", "UniProt", "RHEA", "Pfam", "GO", "CHEBI", "ARO"], github: "https://github.com/CultureBotAI/proteintraitsmech", site: "https://culturebotai.github.io/proteintraitsmech/", page: "", license: "CC0-1.0", sources: "InterPro, Pfam, CATH, SCOPe, ECOD, Rhea, ExPASy ENZYME, CARD/ARO, PROSITE, TCDB, COG, Reactome, METPO", extra: "118,280 structure, 127,082 sequence, 384 sequence-structure, 163,223 function and 9 evolution records. The corpus map uses text embeddings; a separate protein map covers 68,657 Swiss-Prot proteins." }, + TraitMech: { key: "traitmech", scale: "Traits", tag: "Microbial ecophysiological trait knowledge base, seeded from METPO, one curated YAML per trait.", records: 696, unit: "trait records", root: "TraitRecord", vocab: ["METPO", "GO", "NCBITaxon", "CHEBI", "UniProt"], github: "https://github.com/CultureBotAI/TraitMech", site: "https://culturebotai.github.io/TraitMech/", page: "", license: "CC0-1.0", sources: "METPO (vendored OWL), GapMind and GTDB genome tables as candidates", extra: "696 traits across 10 categories; 68.5% embedded. Browse definitions, causal graphs, kg-microbe matches and nearest neighbors, or explore PaCMAP and graph layouts." }, + CellStructureMech: { key: "cellstructuremech", scale: "Cell structures", tag: "Ontology-grounded microbial cell structures: components, distribution, function and causal mechanism.", records: 421, unit: "structure records", root: "CellStructureRecord", vocab: ["GO", "NCBITaxon", "UniProt", "METPO", "Pfam"], github: "https://github.com/CultureBotAI/CellStructureMech", site: "https://culturebotai.github.io/CellStructureMech/", page: "", license: "CC0-1.0", sources: "GO cellular component, UniProt subcellular location, Complex Portal, EMDB/EMPIAR, PDB, TraitMech", extra: "421 structures across 13 categories, including 177 membrane organelles; 367 records are GO-grounded. Browse by category, kind and grounding status." }, + ProteinTraitsMech: { key: "proteintraitsmech", scale: "Proteins", tag: "Protein sequence, structure and function trait classes, one curated YAML per trait, evidence-backed.", records: 429291, unit: "protein trait records", root: "ProteinTraitRecord", vocab: ["InterPro", "UniProt", "RHEA", "Pfam", "GO", "CHEBI", "ARO"], github: "https://github.com/CultureBotAI/proteintraitsmech", site: "https://culturebotai.github.io/proteintraitsmech/", page: "", license: "CC0-1.0", sources: "InterPro, Pfam, CATH, SCOPe, ECOD, Rhea, ExPASy ENZYME, CARD/ARO, PROSITE, TCDB, COG, Reactome, METPO", extra: "118,281 structure, 147,091 sequence, 384 sequence-structure, 163,526 function and 9 evolution records. The corpus map uses text embeddings; a separate protein map covers 68,657 Swiss-Prot proteins." }, NaturalProductMech: { key: "naturalproductmech", scale: "Natural products", tag: "One record per natural product structure: who makes it, from which gene cluster, and what it does.", records: 3115, unit: "natural product structures", root: "NaturalProductRecord", vocab: ["MIBiG", "NCBITaxon", "ChEBI", "NPAtlas", "PubChem", "UniProt"], github: "https://github.com/CultureBotAI/NaturalProductMech", site: "https://culturebotai.github.io/NaturalProductMech/", page: "", license: "CC0-1.0 code · CC BY 4.0 data", sources: "ChEBI, MIBiG gene clusters, LOTUS occurrences, CyanoMetDB, NPAtlas, PubChem BioAssay, BindingDB, NCBI Taxonomy", extra: "3,407 producer claims, including 805 supported by evidence addressing the organism; 2,342 records carry cited occurrences. Structure and corpus maps complement the record browser." }, AntibioticMech: { key: "antibioticmech", scale: "Antibiotics", tag: "One record per antimicrobial structure, harmonizing ChEBI and CARD with mechanism and evidence.", records: 2939, unit: "antimicrobial structures", root: "AntibioticRecord", vocab: ["CHEBI", "ARO", "CAS", "NCBITaxon", "PubChem", "DrugBank"], github: "https://github.com/CultureBotAI/AntibioticMech", site: "https://culturebotai.github.io/AntibioticMech/", page: "", license: "CC0-1.0 code · CC BY 4.0 data", sources: "ChEBI 3-star antimicrobial roles, CARD/ARO antibiotic molecules, PubChem structures, PHI-base, MIBiG", extra: "2,669 ontology-grounded and 270 minted identities; 454 records with mode of action, 282 with molecular targets and 16 with causal graphs. The chemical map places all 2,939 records by chiral molecular fingerprints." }, MediaIngredientMech: { key: "mediaingredientmech", scale: "Ingredients", tag: "LLM-assisted curation of media-ingredient ontology mappings with full audit trails.", records: 2951, unit: "ingredient records", root: "IngredientRecord", vocab: ["CHEBI", "CAS", "NCIT", "FOODON", "ENVO"], github: "https://github.com/CultureBotAI/MediaIngredientMech", site: "https://culturebotai.github.io/MediaIngredientMech/", page: "/mediaingredientmech/", license: "CC0-1.0", sources: "Ingredient strings aggregated from CultureMech recipes; OAK/OLS term services; ChEBI, FOODON, NCIT, MeSH, METPO", extra: "2,616 of 2,951 ingredients mapped (89%). Search by mapping status and quality, or explore ingredient PaCMAP and graph layouts." }, - CultureMech: { key: "culturemech", scale: "Media", tag: "Versioned, ontology-grounded knowledge base of microbial culture-media recipes.", records: 10657, unit: "published recipes", root: "MediaRecipe", vocab: ["CHEBI", "KEGG", "FOODON", "UBERON", "CAS"], github: "https://github.com/CultureBotAI/CultureMech", site: "https://culturebotai.github.io/CultureMech/", page: "/culturemech/", license: "CC0-1.0", sources: "MediaDive/DSMZ, TogoMedium, KOMODO, ATCC, JCM, BacDive (queued)", extra: "The published browser contains 10,657 recipes across five categories, with filters for target organisms and ingredients. Explore derived ingredient-based and direct medium-node embeddings, plus a graph layout." } + CultureMech: { key: "culturemech", scale: "Media", tag: "Versioned, ontology-grounded knowledge base of microbial culture-media recipes.", records: 6286, unit: "canonical media", root: "MediaRecipe", vocab: ["CHEBI", "KEGG", "FOODON", "UBERON", "CAS"], github: "https://github.com/CultureBotAI/CultureMech", site: "https://culturebotai.github.io/CultureMech/", page: "/culturemech/", license: "CC0-1.0", sources: "MediaDive/DSMZ, TogoMedium, KOMODO, ATCC, JCM, BacDive (queued)", extra: "6,286 deduplicated canonical media, merged from 15,878 source-specific normalized records that the published browser serves across five categories, with filters for target organisms and ingredients. Explore derived ingredient-based and direct medium-node embeddings, plus a graph layout." } }; // Directed cross-references between Mech records, schemas and curation practice. @@ -875,22 +875,22 @@ The X-Mech suite is a fleet of 10 curated, ontology-grounded knowledge bases tha ## The 10 Mechs -Each card carries its Mech's own site color. Hover a card to trace its ties in the graph above; use "Show in graph" to select it. The small print under each headline number gives reviewed records and merged pull requests; a Mech whose schema has no field recording review shows only the pull-request count, rather than a zero that would claim more than it knows. Card and graph totals reflect the published Mech pages checked on September 15, 2026; each Browse link is the source for its card. These published-browser totals may differ from the older record-corpus census below. Fleet membership and capability declarations come from CLAW fleet manifest at 683d6b9. +Each card carries its Mech's own site color. Hover a card to trace its ties in the graph above; use "Show in graph" to select it. The small print under each headline number gives reviewed records and merged pull requests; a Mech whose schema has no field recording review shows only the pull-request count, rather than a zero that would claim more than it knows. Card and graph totals reflect the published Mech pages checked on September 20, 2026; each Browse link is the source for its card, except CultureMech, whose landing tile carries a legacy figure matching none of its data layers, so its card states the merged canonical count its own record index publishes. These published-browser totals may differ from the older record-corpus census below. Fleet membership and capability declarations come from CLAW fleet manifest at 683d6b9.

HabitatMech

Habitat

Four habitat vocabularies harmonized into ENVO-grounded records that keep every source's attestation.

-
3,206habitat records · 684 reviewed
-

684 reviewed · 130 merged PRs

+
3,206habitat records · 686 reviewed
+

686 reviewed · 144 merged PRs

ENVONCBITaxonBTOUBERONFOODONGOLDBacDive
BrowseGitHubShow in graphin fleet manifest

CommunityMech

Community

Curated knowledge base of microbial communities, their interactions, cultivation conditions and evidence.

-
374community records · 16 categories
-

528 merged PRs

+
379community records · 16 categories
+

534 merged PRs

NCBITaxonChEBIGOENVOGTDBPMID
PageBrowseGitHubShow in graphin fleet manifest
@@ -898,31 +898,31 @@ Each card carries its Mech's own site color. Hover a card to trace its ties in t

TaxonMech

Taxa and strains

Microbial taxa and strains identified by NCBI Taxonomy, harmonized with GTDB, LPSN and BacDive, with evidence for strain-to-genome links.

625,960taxon records · 100,745 listed strains
-

0 reviewed · 15 merged PRs

+

0 reviewed · 16 merged PRs

NCBITaxonGTDBLPSNBacDiveNCBI Assembly
BrowseGitHubShow in graphin fleet manifest

TraitMech

Traits

Microbial ecophysiological trait knowledge base seeded from METPO, one curated YAML per trait, with causal mechanism graphs.

-
630trait records · 10 categories
-

427 reviewed · 517 merged PRs

+
696trait records · 10 categories
+

427 reviewed · 585 merged PRs

METPOGONCBITaxonChEBIUniProtPATO
BrowseGitHubShow in graphin fleet manifest

CellStructureMech

Cell structures

Organelles, envelope layers, appendages, microcompartments and complexes: components, distribution, function and causal mechanism.

-
360structure records · 306 GO-grounded
-

0 reviewed · 425 merged PRs

+
421structure records · 367 GO-grounded
+

0 reviewed · 465 merged PRs

GONCBITaxonUniProtMETPOPfamPDB
BrowseGitHubShow in graphin fleet manifest

ProteinTraitsMech

Proteins

Protein sequence, structure and function trait classes seeded from InterPro, Pfam, Rhea, CATH, SCOPe, CARD and more.

-
408,978protein trait records · 29 sources
-

39,591 reviewed · 314 merged PRs

+
429,291protein trait records · 34 sources
+

39,591 reviewed · 316 merged PRs

InterProUniProtRheaPfamGOChEBIARO
BrowseGitHubShow in graphin fleet manifest
@@ -938,7 +938,7 @@ Each card carries its Mech's own site color. Hover a card to trace its ties in t

AntibioticMech

Antibiotics

One record per antimicrobial chemical structure, harmonizing ChEBI and CARD with targets, mode of action, resistance and evidence.

2,939antimicrobial structures · 2,669 grounded
-

80 reviewed · 160 merged PRs

+

80 reviewed · 243 merged PRs

ChEBIAROCASPubChemDrugBankNCBITaxon
BrowseGitHubShow in graphin fleet manifest
@@ -946,14 +946,14 @@ Each card carries its Mech's own site color. Hover a card to trace its ties in t

MediaIngredientMech

Ingredients

LLM-assisted curation of media-ingredient ontology mappings with full audit trails; owns ingredient identity for the fleet.

2,951ingredient records · 2,616 mapped
-

359 merged PRs

+

361 merged PRs

ChEBICASNCITFOODONENVOMeSH
PageBrowseGitHubShow in graphin fleet manifest

CultureMech

Media

Versioned, ontology-grounded knowledge base of culture-media recipes from MediaDive, TogoMedium, KOMODO and the major collections.

-
10,657published recipes · 5 categories
+
6,286canonical media · 5 categories

250 merged PRs

ChEBIKEGGFOODONUBERONCASNCBITaxon
PageBrowseGitHubShow in graphin fleet manifest
diff --git a/mediaingredientmech.md b/mediaingredientmech.md index e091485..5bd1c84 100644 --- a/mediaingredientmech.md +++ b/mediaingredientmech.md @@ -339,11 +339,16 @@ It is part of the [KG-Microbe knowledge graph](/kg-microbe/) project at Lawrence ## Related Tools -- **[X-Mech Suite overview](/mechs/)** - All nine Mechs, their shared vocabulary and cross-references, and the culturebotai-claw orchestrator -- **[CultureMech](/culturemech/)** - Chemical entity extraction from media recipes (6,286 canonical media) +- **[X-Mech Suite overview](/mechs/)** - All ten Mechs, their shared vocabulary and cross-references, and the culturebotai-claw orchestrator +- **[TaxonMech](https://culturebotai.github.io/TaxonMech/)** - Microbial taxa and strains grounded in NCBI Taxonomy, harmonized with GTDB, LPSN and BacDive +- **[HabitatMech](https://culturebotai.github.io/HabitatMech/)** - Habitats harmonized from GOLD, BacDive, PREGO and Madin et al. into ENVO-grounded records - **[CommunityMech](/communitymech/)** - Microbial community interaction modeling - **[TraitMech](https://culturebotai.github.io/TraitMech/)** - Microbial ecophysiological trait knowledge base +- **[CellStructureMech](https://culturebotai.github.io/CellStructureMech/)** - Microbial cell structures, between the trait and protein layers - **[ProteinTraitsMech](https://culturebotai.github.io/proteintraitsmech/)** - Protein sequence, structure, and function traits +- **[NaturalProductMech](https://culturebotai.github.io/NaturalProductMech/)** - Natural product structures with their producer organisms and gene clusters +- **[AntibioticMech](https://culturebotai.github.io/AntibioticMech/)** - Antimicrobial structures harmonizing ChEBI and CARD/ARO +- **[CultureMech](/culturemech/)** - Chemical entity extraction from media recipes (6,286 canonical media) - **[MicroMediaParam](/resources/#micromediaparam)** - Chemical compound standardization (78% ChEBI coverage) - **[kg-microbe](/kg-microbe/)** - Central knowledge graph for microbial cultivation diff --git a/resources.md b/resources.md index 0ca0aa4..7f64088 100644 --- a/resources.md +++ b/resources.md @@ -14,7 +14,7 @@ CultureBotAI led by Dr. Marcin P. Joachimiak develops and maintains various comp **New to CultureBotAI?** Start with [Project Ecosystem & Workflows](#-project-ecosystem--workflows) to understand how tools work together. **Looking for specific tools?** -- [AI Curation Tools](#-ai-curation-tools) - The X-Mech suite: CultureMech, MediaIngredientMech, CommunityMech, TraitMech, ProteinTraitsMech, AntibioticMech, CellStructureMech, HabitatMech +- [AI Curation Tools](#-ai-curation-tools) - The X-Mech suite of ten: CultureMech, MediaIngredientMech, CommunityMech, TraitMech, ProteinTraitsMech, AntibioticMech, CellStructureMech, HabitatMech, NaturalProductMech, TaxonMech ([suite overview](/mechs/)) - [Growth Media Prediction](#growth-media-prediction--design) - MicroGrowLink, MicroGrowAgents, KOGUT - [Chemical Data Processing](#micromediaparam) - CultureMech, MicroMediaParam - [Genome Analysis](#data-processing--analysis) - eggnog_runner, eggnogtable @@ -131,7 +131,7 @@ The CultureBotAI toolkit consists of interconnected projects organized into a da ## 🤖 AI Curation Tools -The **[X-Mech Suite](/mechs/)** (CultureMech, MediaIngredientMech, CommunityMech, TraitMech, ProteinTraitsMech, AntibioticMech, CellStructureMech, HabitatMech; see the [suite overview and relationship graph](/mechs/)) forms the AI-powered curation pipeline that transforms unstructured microbial cultivation data from literature, laboratory records, and sequence data into standardized, machine-readable knowledge graphs. +The **[X-Mech Suite](/mechs/)** is a fleet of ten ontology-grounded knowledge bases (CultureMech, MediaIngredientMech, CommunityMech, TraitMech, ProteinTraitsMech, AntibioticMech, CellStructureMech, HabitatMech, NaturalProductMech, TaxonMech; see the [suite overview and relationship graph](/mechs/)), coordinated by the [culturebotai-claw](https://github.com/CultureBotAI/culturebotai-claw) orchestrator. Together they form the AI-powered curation pipeline that transforms unstructured microbial cultivation data from literature, laboratory records, and sequence data into standardized, machine-readable knowledge graphs. ### Pipeline Overview @@ -161,9 +161,9 @@ AI Predictions (MicroGrowAgents, MicroGrowLink) --- ### MediaIngredientMech - LLM-Assisted Ingredient Curation -**[Dedicated Page](/mediaingredientmech/)** | **[GitHub Repository](https://github.com/CultureBotAI/MediaIngredientMech)** | Python +**[Dedicated Page](/mediaingredientmech/)** | **[GitHub Repository](https://github.com/CultureBotAI/MediaIngredientMech)** | **[Web Interface](https://culturebotai.github.io/MediaIngredientMech/)** | CC0-1.0 License -Curated media ingredient ontology mappings with LLM-assisted workflows for standardizing microbial cultivation ingredient data. Uses Large Language Models to intelligently map ingredient names to standardized ontology terms. +2,951 curated ingredient records, 2,616 of them mapped (89% coverage), with LLM-assisted workflows for standardizing microbial cultivation ingredient data. Uses Large Language Models to intelligently map ingredient names to standardized ontology terms. **What it does**: Leverages LLMs for semantic matching of ambiguous ingredient names to ChEBI, PubChem, and METPO ontologies with human-in-the-loop validation. @@ -174,7 +174,7 @@ Curated media ingredient ontology mappings with LLM-assisted workflows for stand ### CommunityMech - Microbial Community Interaction Modeling **[Dedicated Page](/communitymech/)** | **[GitHub Repository](https://github.com/CultureBotAI/CommunityMech)** | **[Web Interface](https://culturebotai.github.io/CommunityMech/)** | BSD-3-Clause License -LinkML-based modeling of microbial communities with evidence-based ecological interactions for consortium design and multi-organism cultivation. +379 curated communities across 16 categories, modeled in LinkML with evidence-based ecological interactions for consortium design and multi-organism cultivation. **What it does**: Provides structured representation of community composition, syntrophic interactions, and cultivation requirements for multi-species systems. @@ -187,7 +187,7 @@ LinkML-based modeling of microbial communities with evidence-based ecological in ### TraitMech - Microbial Ecophysiological Traits **[GitHub Repository](https://github.com/CultureBotAI/TraitMech)** | **[Web Interface](https://culturebotai.github.io/TraitMech/)** | CC0-1.0 License -Microbial ecophysiological trait knowledge base seeded from METPO and curated incrementally — 630 trait records across 10 categories, each with definitions, causal graphs, and kg-microbe matches. +Microbial ecophysiological trait knowledge base seeded from METPO and curated incrementally — 696 trait records across 10 categories, each with definitions, causal graphs, and kg-microbe matches. **What it does**: Standardizes the trait vocabulary used to describe microbial growth and ecology, and links each trait to its evidence and to kg-microbe. @@ -196,12 +196,61 @@ Microbial ecophysiological trait knowledge base seeded from METPO and curated in ### ProteinTraitsMech - Protein Sequence & Structure Traits **[GitHub Repository](https://github.com/CultureBotAI/proteintraitsmech)** | **[Web Interface](https://culturebotai.github.io/proteintraitsmech/)** | CC0-1.0 License -Knowledge base of protein sequence, structure, and function traits — 400,000+ LinkML-validated records from 29 sources, one YAML per trait, with evidence-backed causal graphs. +Knowledge base of protein sequence, structure, and function traits — 429,291 LinkML-validated records from 34 sources, one YAML per trait, with evidence-backed causal graphs. **What it does**: Extends trait curation from the organism level to the molecular level, connecting protein features to the phenotypes they help explain. --- +### CellStructureMech - Microbial Cell Structures +**[GitHub Repository](https://github.com/CultureBotAI/CellStructureMech)** | **[Web Interface](https://culturebotai.github.io/CellStructureMech/)** | CC0-1.0 License (authored content; redistributed UniProt and Complex Portal material is CC BY 4.0) + +421 structure records across 13 categories — organelles, envelope layers, appendages, microcompartments and multi-protein complexes — 367 of them grounded in GO cellular component. + +**What it does**: Occupies the layer between traits and proteins, recording what a structure is made of, which organisms have it, what it does, and the causal mechanism by which it does so. + +**Related**: Confers phenotypes recorded as [TraitMech](https://culturebotai.github.io/TraitMech/) terms; hands single proteins off to [ProteinTraitsMech](https://culturebotai.github.io/proteintraitsmech/). + +--- + +### HabitatMech - Microbial Habitats +**[GitHub Repository](https://github.com/CultureBotAI/HabitatMech)** | **[Web Interface](https://culturebotai.github.io/HabitatMech/)** | CC0-1.0 License + +3,206 habitat records harmonized from GOLD, BacDive, PREGO and Madin et al., grounded in ENVO, UBERON, FOODON, BTO and PO, with every source's own attestation retained. + +**What it does**: Gives the fleet one record per habitat concept, so that isolation sources expressed differently by each upstream database resolve to a single identity. + +**Related**: Hands the one overlapping concept, BTO:0000316 culture medium, to [CultureMech](/culturemech/) rather than curating it twice. + +--- + +### AntibioticMech - Antimicrobial Structures +**[GitHub Repository](https://github.com/CultureBotAI/AntibioticMech)** | **[Web Interface](https://culturebotai.github.io/AntibioticMech/)** | CC0-1.0 License (code and schema) · CC BY 4.0 (record content) + +2,939 antimicrobial chemical structures, 2,669 ontology-grounded, harmonizing ChEBI's antimicrobial roles with CARD/ARO molecules, targets and resistance determinants. + +**What it does**: Records one entry per antimicrobial structure with its mode of action, molecular targets and the evidence for both, and places all 2,939 on a chemical map by molecular fingerprint. + +--- + +### NaturalProductMech - Natural Product Structures +**[GitHub Repository](https://github.com/CultureBotAI/NaturalProductMech)** | **[Web Interface](https://culturebotai.github.io/NaturalProductMech/)** | CC0-1.0 License (code and schema) · CC BY 4.0 (record content) + +3,115 natural product structures, one per Standard InChIKey, seeded from nine sources and grounded in ChEBI, MIBiG and NCBI Taxonomy. + +**What it does**: Links each structure to its producer organisms, biosynthetic gene clusters, occurrences and bioactivities, with cited evidence for each claim. Records are seeded; curation has not yet started. + +--- + +### TaxonMech - Microbial Taxa and Strains +**[GitHub Repository](https://github.com/CultureBotAI/TaxonMech)** | **[Web Interface](https://culturebotai.github.io/TaxonMech/)** | CC0-1.0 License (project content; upstream sources retain their own terms) + +625,960 taxon records at species level and below, with 100,745 distinct listed strains, resolving NCBI Taxonomy, GTDB, LPSN and BacDive onto one NCBI-grounded identity. + +**What it does**: Supplies the taxon identity the rest of the fleet refers to, with evidence for strain-to-genome links. Higher taxa appear only in a record's lineage, never as records of their own. + +--- + ### Common Workflows #### Workflow 1: Novel Organism Media Prediction diff --git a/scripts/fleet/roots.py b/scripts/fleet/roots.py index b59e1ae..13e4a13 100644 --- a/scripts/fleet/roots.py +++ b/scripts/fleet/roots.py @@ -36,6 +36,16 @@ "CultureMech": ["data/merge_yaml/merged/*.yaml"], } +# Paths a record glob sweeps up that are not records. A `**` glob cannot say +# "but not this subtree", and MediaIngredientMech keeps timestamped copies of +# edited records under data/ingredients/mapped/backups/. Counting those six made +# the census report 2,957 ingredient records where the Mech's own site, its +# published data/ingredients.json and its tracked tree all say 2,951 +# (CultureBotAI.github.io#88). Matched against the path relative to the checkout. +EXCLUDE_DIRS: dict[str, list[str]] = { + "MediaIngredientMech": ["data/ingredients/mapped/backups/"], +} + ORDER = list(RECORD_GLOBS) # Prefixes that identify a piece of literature rather than a concept. Every @@ -63,6 +73,9 @@ def record_paths(name: str) -> list[str]: paths: list[str] = [] for pattern in RECORD_GLOBS[name]: paths.extend(glob.glob(os.path.join(root, pattern), recursive=True)) + for prefix in EXCLUDE_DIRS.get(name, []): + excluded = os.path.join(root, prefix) + paths = [p for p in paths if not p.startswith(excluded)] if not paths: raise SystemExit( f"{name}: {', '.join(RECORD_GLOBS[name])} matched no files under {root}. " From 438a177fd017ee50e8b0a38f14d71f06ecde8292 Mon Sep 17 00:00:00 2001 From: "marcin p. joachimiak" <4625870+realmarcin@users.noreply.github.com> Date: Sun, 20 Sep 2026 00:52:44 -0700 Subject: [PATCH 2/3] Act on the review: correct the numbers the numbers contradicted MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit An adversarial pass over the branch raised 27 findings; 7 survived independent verification. All seven are addressed here. The normalized-recipe count was off by one across the site, and this branch made that visible by stating the right figure on the card. Six places said 15,877; the corpus holds 15,878, which CultureMech's own merge_stats.json records as its input_recipes and its README states in a CI-checked block. Corrected in culturemech.md, resources.md and research.md rather than reverting the card. "Has never matched any data layer" was too strong a claim about CultureMech's 10,657 tile, and wrong. It is the March 2026 normalized count, recorded as input_recipes in the Mech's tracked merge_stats_2026.json, and was already four months stale when the tile was written. Saying which layer it came from is both true and more useful than calling it baseless. The NaturalProductMech card listed NPAtlas among its sources, which contradicts the resources.md section added two commits ago, the guidance file, and the Mech's own README — NPAtlas is CC BY-NC and explicitly cannot be seeded into a CC BY 4.0 corpus. It is a cross-reference target, which is why it stays in `vocab` and leaves `sources`; NPClassifier and AntibioticMech, both genuinely adopted, take its place, restoring the nine the README names. Two of the new resources.md sections stated partial coverage as universal. AntibioticMech does not record a mode of action for every antimicrobial: 454 of 2,939 have one and 282 a molecular target. NaturalProductMech carries bioactivities on 176 of 3,115 records, not all, and only 805 of its 3,407 producer claims rest on evidence that addressed the organism. The TaxonMech bullet linked pages/straininfo.html, which 404s, and its card claimed browsers for StrainInfo deposits and AllTheBacteria assemblies that the site does not publish. TaxonMech publishes browse, type-strains and sources; the bullet now points at type-strains. Every culturebotai.github.io link the page carries was then fetched, and all resolve. record_paths() had no test, so the exclusion added for #88 could regress silently. Four cover it: backups are excluded, a sibling directory whose name merely starts with "backups" is not, an exclusion that empties a corpus still raises rather than returning zero, and every excluded Mech is one the census reads — which catches an entry left behind by a rename. Filed rather than fixed: enumerations outside the X-Mech pages that are still short of ten, the site-wide footer among them (#90), and two Quick Navigation anchors that miss the emoji leading-hyphen id (#91). Co-Authored-By: Claude Opus 5 (1M context) --- _fleet/README.md | 8 +++--- _fleet/fleet_fragment.html | 4 +-- _fleet/mechs_template.md | 2 +- culturemech.md | 6 ++--- mechs.md | 6 ++--- research.md | 2 +- resources.md | 8 +++--- tests/test_fleet_page.py | 55 ++++++++++++++++++++++++++++++++++++++ 8 files changed, 74 insertions(+), 17 deletions(-) diff --git a/_fleet/README.md b/_fleet/README.md index 3672c4e..9069c05 100644 --- a/_fleet/README.md +++ b/_fleet/README.md @@ -105,9 +105,11 @@ carries literal ellipsis placeholders filled from `data/ingredients.json` (2,951 ingredients, 2,616 MAPPED). CultureMech is the one card that does not take its Mech's headline tile. That -tile reads 10,657 "recipes" and has never matched any data layer: when it was -written on 2026-06-30 the corpus was already 15,878 normalized and 6,103 merged, -and nothing regenerates it. The card states 6,286 canonical media instead, which +tile reads 10,657 "recipes", which matches no current data layer: it is the +March 2026 normalized count, recorded as `input_recipes` in the Mech's tracked +`data/merge_yaml/merge_stats_2026.json` (2026-03-15), and it was already four +months stale when the tile was written on 2026-06-30, by which time the corpus +was 15,878 normalized and 6,103 merged. Nothing regenerates it. The card states 6,286 canonical media instead, which is what CultureMech's own `pages/index.html` publishes and what the fleet census counts; the merged/normalized split is explained in the card's detail text. diff --git a/_fleet/fleet_fragment.html b/_fleet/fleet_fragment.html index ccb469c..74d4291 100644 --- a/_fleet/fleet_fragment.html +++ b/_fleet/fleet_fragment.html @@ -444,11 +444,11 @@

Shared vocabulary

var MECHS = { HabitatMech: { key: "habitatmech", scale: "Habitat", tag: "Four habitat vocabularies harmonized into ENVO-grounded records that keep every source's attestation.", records: 3206, unit: "habitat records", root: "HabitatRecord", vocab: ["ENVO", "NCBITaxon", "BTO", "UBERON", "FOODON"], github: "https://github.com/CultureBotAI/HabitatMech", site: "https://culturebotai.github.io/HabitatMech/", page: "", license: "CC0-1.0", sources: "JGI GOLD ecosystem paths, BacDive isolation sources, PREGO, Madin et al.; ENVO/UBERON/FOODON/BTO via kg-microbe", extra: "686 curator-reviewed; 2,151 ontology-grounded; 176 corroborated by two or more sources. Browse habitat records or explore the semantic text map." }, CommunityMech: { key: "communitymech", scale: "Community", tag: "Curated knowledge base of microbial communities, their interactions, cultivation and evidence.", records: 379, unit: "community records", root: "MicrobialCommunity", vocab: ["NCBITaxon", "CHEBI", "GO", "ENVO", "GTDB"], github: "https://github.com/CultureBotAI/CommunityMech", site: "https://culturebotai.github.io/CommunityMech/", page: "/communitymech/", license: "BSD-3-Clause", sources: "PubMed literature, GTDB, IMG, BioModels, CultureMech media, MediaIngredientMech ingredients", extra: "379 communities across 16 categories, with faceted record browsing, a PaCMAP embedding browser and a graph layout." }, - TaxonMech: { key: "taxonmech", scale: "Taxa and strains", tag: "Microbial taxa and strains identified by NCBI Taxonomy and harmonized with GTDB, LPSN and BacDive.", records: 625960, unit: "taxon records", root: "TaxonRecord", vocab: ["NCBITaxon", "GTDB", "LPSN", "BacDive", "NCBI Assembly"], github: "https://github.com/CultureBotAI/TaxonMech", site: "https://culturebotai.github.io/TaxonMech/", page: "", license: "CC0-1.0", sources: "NCBI Taxonomy, GTDB, LPSN, BacDive, MediaDive, GOLD, Madin and BactoTraits through kg-microbe transforms", extra: "625,960 taxa, 100,745 distinct listed strains and 20,648 taxa with a type strain. Dedicated browsers expose StrainInfo deposits and AllTheBacteria assemblies with their evidence." }, + TaxonMech: { key: "taxonmech", scale: "Taxa and strains", tag: "Microbial taxa and strains identified by NCBI Taxonomy and harmonized with GTDB, LPSN and BacDive.", records: 625960, unit: "taxon records", root: "TaxonRecord", vocab: ["NCBITaxon", "GTDB", "LPSN", "BacDive", "NCBI Assembly"], github: "https://github.com/CultureBotAI/TaxonMech", site: "https://culturebotai.github.io/TaxonMech/", page: "", license: "CC0-1.0", sources: "NCBI Taxonomy, GTDB, LPSN, BacDive, MediaDive, GOLD, Madin and BactoTraits through kg-microbe transforms", extra: "625,960 taxa, 100,745 distinct listed strains and 20,648 taxa with a type strain. A dedicated page lists the taxa carrying a type strain, and another states the corpus's sources." }, TraitMech: { key: "traitmech", scale: "Traits", tag: "Microbial ecophysiological trait knowledge base, seeded from METPO, one curated YAML per trait.", records: 696, unit: "trait records", root: "TraitRecord", vocab: ["METPO", "GO", "NCBITaxon", "CHEBI", "UniProt"], github: "https://github.com/CultureBotAI/TraitMech", site: "https://culturebotai.github.io/TraitMech/", page: "", license: "CC0-1.0", sources: "METPO (vendored OWL), GapMind and GTDB genome tables as candidates", extra: "696 traits across 10 categories; 68.5% embedded. Browse definitions, causal graphs, kg-microbe matches and nearest neighbors, or explore PaCMAP and graph layouts." }, CellStructureMech: { key: "cellstructuremech", scale: "Cell structures", tag: "Ontology-grounded microbial cell structures: components, distribution, function and causal mechanism.", records: 421, unit: "structure records", root: "CellStructureRecord", vocab: ["GO", "NCBITaxon", "UniProt", "METPO", "Pfam"], github: "https://github.com/CultureBotAI/CellStructureMech", site: "https://culturebotai.github.io/CellStructureMech/", page: "", license: "CC0-1.0", sources: "GO cellular component, UniProt subcellular location, Complex Portal, EMDB/EMPIAR, PDB, TraitMech", extra: "421 structures across 13 categories, including 177 membrane organelles; 367 records are GO-grounded. Browse by category, kind and grounding status." }, ProteinTraitsMech: { key: "proteintraitsmech", scale: "Proteins", tag: "Protein sequence, structure and function trait classes, one curated YAML per trait, evidence-backed.", records: 429291, unit: "protein trait records", root: "ProteinTraitRecord", vocab: ["InterPro", "UniProt", "RHEA", "Pfam", "GO", "CHEBI", "ARO"], github: "https://github.com/CultureBotAI/proteintraitsmech", site: "https://culturebotai.github.io/proteintraitsmech/", page: "", license: "CC0-1.0", sources: "InterPro, Pfam, CATH, SCOPe, ECOD, Rhea, ExPASy ENZYME, CARD/ARO, PROSITE, TCDB, COG, Reactome, METPO", extra: "118,281 structure, 147,091 sequence, 384 sequence-structure, 163,526 function and 9 evolution records. The corpus map uses text embeddings; a separate protein map covers 68,657 Swiss-Prot proteins." }, - NaturalProductMech: { key: "naturalproductmech", scale: "Natural products", tag: "One record per natural product structure: who makes it, from which gene cluster, and what it does.", records: 3115, unit: "natural product structures", root: "NaturalProductRecord", vocab: ["MIBiG", "NCBITaxon", "ChEBI", "NPAtlas", "PubChem", "UniProt"], github: "https://github.com/CultureBotAI/NaturalProductMech", site: "https://culturebotai.github.io/NaturalProductMech/", page: "", license: "CC0-1.0 code · CC BY 4.0 data", sources: "ChEBI, MIBiG gene clusters, LOTUS occurrences, CyanoMetDB, NPAtlas, PubChem BioAssay, BindingDB, NCBI Taxonomy", extra: "3,407 producer claims, including 805 supported by evidence addressing the organism; 2,342 records carry cited occurrences. Structure and corpus maps complement the record browser." }, + NaturalProductMech: { key: "naturalproductmech", scale: "Natural products", tag: "One record per natural product structure: who makes it, from which gene cluster, and what it does.", records: 3115, unit: "natural product structures", root: "NaturalProductRecord", vocab: ["MIBiG", "NCBITaxon", "ChEBI", "NPAtlas", "PubChem", "UniProt"], github: "https://github.com/CultureBotAI/NaturalProductMech", site: "https://culturebotai.github.io/NaturalProductMech/", page: "", license: "CC0-1.0 code · CC BY 4.0 data", sources: "ChEBI, MIBiG gene clusters, LOTUS occurrences, CyanoMetDB, NPClassifier, PubChem BioAssay, BindingDB, NCBI Taxonomy, AntibioticMech", extra: "3,407 producer claims, including 805 supported by evidence addressing the organism; 2,342 records carry cited occurrences. Structure and corpus maps complement the record browser." }, AntibioticMech: { key: "antibioticmech", scale: "Antibiotics", tag: "One record per antimicrobial structure, harmonizing ChEBI and CARD with mechanism and evidence.", records: 2939, unit: "antimicrobial structures", root: "AntibioticRecord", vocab: ["CHEBI", "ARO", "CAS", "NCBITaxon", "PubChem", "DrugBank"], github: "https://github.com/CultureBotAI/AntibioticMech", site: "https://culturebotai.github.io/AntibioticMech/", page: "", license: "CC0-1.0 code · CC BY 4.0 data", sources: "ChEBI 3-star antimicrobial roles, CARD/ARO antibiotic molecules, PubChem structures, PHI-base, MIBiG", extra: "2,669 ontology-grounded and 270 minted identities; 454 records with mode of action, 282 with molecular targets and 16 with causal graphs. The chemical map places all 2,939 records by chiral molecular fingerprints." }, MediaIngredientMech: { key: "mediaingredientmech", scale: "Ingredients", tag: "LLM-assisted curation of media-ingredient ontology mappings with full audit trails.", records: 2951, unit: "ingredient records", root: "IngredientRecord", vocab: ["CHEBI", "CAS", "NCIT", "FOODON", "ENVO"], github: "https://github.com/CultureBotAI/MediaIngredientMech", site: "https://culturebotai.github.io/MediaIngredientMech/", page: "/mediaingredientmech/", license: "CC0-1.0", sources: "Ingredient strings aggregated from CultureMech recipes; OAK/OLS term services; ChEBI, FOODON, NCIT, MeSH, METPO", extra: "2,616 of 2,951 ingredients mapped (89%). Search by mapping status and quality, or explore ingredient PaCMAP and graph layouts." }, CultureMech: { key: "culturemech", scale: "Media", tag: "Versioned, ontology-grounded knowledge base of microbial culture-media recipes.", records: 6286, unit: "canonical media", root: "MediaRecipe", vocab: ["CHEBI", "KEGG", "FOODON", "UBERON", "CAS"], github: "https://github.com/CultureBotAI/CultureMech", site: "https://culturebotai.github.io/CultureMech/", page: "/culturemech/", license: "CC0-1.0", sources: "MediaDive/DSMZ, TogoMedium, KOMODO, ATCC, JCM, BacDive (queued)", extra: "6,286 deduplicated canonical media, merged from 15,878 source-specific normalized records that the published browser serves across five categories, with filters for target organisms and ingredients. Explore derived ingredient-based and direct medium-node embeddings, plus a graph layout." } diff --git a/_fleet/mechs_template.md b/_fleet/mechs_template.md index c27a441..e2d3bd4 100644 --- a/_fleet/mechs_template.md +++ b/_fleet/mechs_template.md @@ -102,7 +102,7 @@ Each card carries its Mech's own site color. Hover a card to trace its ties in t Alongside record browsing, the Mechs publish complementary ways to explore their data: -- **Taxa and strains:** TaxonMech links [StrainInfo deposits](https://culturebotai.github.io/TaxonMech/pages/straininfo.html) to taxon identities and genome evidence. +- **Taxa and strains:** TaxonMech lists the [20,648 taxa with a type strain](https://culturebotai.github.io/TaxonMech/pages/type-strains.html), each naming the BacDive deposit that LPSN records as the type, and states its [sources](https://culturebotai.github.io/TaxonMech/pages/sources.html). - **Community, trait and media similarity:** explore [CommunityMech](https://culturebotai.github.io/CommunityMech/community_umap.html), [TraitMech](https://culturebotai.github.io/TraitMech/pages/umap.html), [ingredients](https://culturebotai.github.io/MediaIngredientMech/ingredient_umap.html) and [culture media](https://culturebotai.github.io/CultureMech/app/umap.html) through their embedding browsers. - **Protein traits and proteins:** ProteinTraitsMech separates its [text-embedding corpus map](https://culturebotai.github.io/proteintraitsmech/map.html) from its [map of 68,657 Swiss-Prot proteins](https://culturebotai.github.io/proteintraitsmech/map.html#proteins). - **Chemical structures:** compare compounds in the [AntibioticMech chemical map](https://culturebotai.github.io/AntibioticMech/pages/chemical-map.html) and the [NaturalProductMech structure map](https://culturebotai.github.io/NaturalProductMech/pages/chemical-map.html); NaturalProductMech also offers a [corpus map](https://culturebotai.github.io/NaturalProductMech/pages/map.html). diff --git a/culturemech.md b/culturemech.md index a3ddc68..097a6b5 100644 --- a/culturemech.md +++ b/culturemech.md @@ -1,7 +1,7 @@ --- layout: default title: "CultureMech" -description: "15,877 curated culture media recipes from major international repositories, deduplicated into 6,286 canonical media, with LinkML schema, ontology grounding, and browser-based exploration" +description: "15,878 curated culture media recipes from major international repositories, deduplicated into 6,286 canonical media, with LinkML schema, ontology grounding, and browser-based exploration" permalink: /culturemech/ --- @@ -9,7 +9,7 @@ permalink: /culturemech/ ## Overview -**CultureMech** is a knowledge graph of culture media recipes from major international repositories: 15,877 curated records, deduplicated into 6,286 canonical media. The two layers answer different questions. The normalized layer keeps each repository's own formulation, so a medium published twice with different salts stays two records; the merged layer is the canonical set of distinct media. It transforms unstructured media composition text from literature and laboratory records into standardized, machine-readable data through automated chemical entity extraction and ontology-based grounding. +**CultureMech** is a knowledge graph of culture media recipes from major international repositories: 15,878 curated records, deduplicated into 6,286 canonical media. The two layers answer different questions. The normalized layer keeps each repository's own formulation, so a medium published twice with different salts stays two records; the merged layer is the canonical set of distinct media. It transforms unstructured media composition text from literature and laboratory records into standardized, machine-readable data through automated chemical entity extraction and ontology-based grounding. **The Challenge**: Microbial cultivation protocols are scattered across scientific literature, culture collection databases, and laboratory notebooks in unstructured text formats. This makes it difficult to systematically analyze growth requirements, compare media compositions, or leverage this data for AI-driven predictions. @@ -20,7 +20,7 @@ permalink: /culturemech/ ## Key Features ### 🧬 Comprehensive Coverage -- **6,286 canonical media** deduplicated from 15,877 curated recipes +- **6,286 canonical media** deduplicated from 15,878 curated recipes - Coverage spans bacteria, archaea, fungi, and other microorganisms - Integration with ATCC, DSMZ, JCM, and other major repositories - Historical and contemporary cultivation protocols diff --git a/mechs.md b/mechs.md index c53ad7c..0ab39b0 100644 --- a/mechs.md +++ b/mechs.md @@ -455,11 +455,11 @@ The X-Mech suite is a fleet of 10 curated, ontology-grounded knowledge bases tha var MECHS = { HabitatMech: { key: "habitatmech", scale: "Habitat", tag: "Four habitat vocabularies harmonized into ENVO-grounded records that keep every source's attestation.", records: 3206, unit: "habitat records", root: "HabitatRecord", vocab: ["ENVO", "NCBITaxon", "BTO", "UBERON", "FOODON"], github: "https://github.com/CultureBotAI/HabitatMech", site: "https://culturebotai.github.io/HabitatMech/", page: "", license: "CC0-1.0", sources: "JGI GOLD ecosystem paths, BacDive isolation sources, PREGO, Madin et al.; ENVO/UBERON/FOODON/BTO via kg-microbe", extra: "686 curator-reviewed; 2,151 ontology-grounded; 176 corroborated by two or more sources. Browse habitat records or explore the semantic text map." }, CommunityMech: { key: "communitymech", scale: "Community", tag: "Curated knowledge base of microbial communities, their interactions, cultivation and evidence.", records: 379, unit: "community records", root: "MicrobialCommunity", vocab: ["NCBITaxon", "CHEBI", "GO", "ENVO", "GTDB"], github: "https://github.com/CultureBotAI/CommunityMech", site: "https://culturebotai.github.io/CommunityMech/", page: "/communitymech/", license: "BSD-3-Clause", sources: "PubMed literature, GTDB, IMG, BioModels, CultureMech media, MediaIngredientMech ingredients", extra: "379 communities across 16 categories, with faceted record browsing, a PaCMAP embedding browser and a graph layout." }, - TaxonMech: { key: "taxonmech", scale: "Taxa and strains", tag: "Microbial taxa and strains identified by NCBI Taxonomy and harmonized with GTDB, LPSN and BacDive.", records: 625960, unit: "taxon records", root: "TaxonRecord", vocab: ["NCBITaxon", "GTDB", "LPSN", "BacDive", "NCBI Assembly"], github: "https://github.com/CultureBotAI/TaxonMech", site: "https://culturebotai.github.io/TaxonMech/", page: "", license: "CC0-1.0", sources: "NCBI Taxonomy, GTDB, LPSN, BacDive, MediaDive, GOLD, Madin and BactoTraits through kg-microbe transforms", extra: "625,960 taxa, 100,745 distinct listed strains and 20,648 taxa with a type strain. Dedicated browsers expose StrainInfo deposits and AllTheBacteria assemblies with their evidence." }, + TaxonMech: { key: "taxonmech", scale: "Taxa and strains", tag: "Microbial taxa and strains identified by NCBI Taxonomy and harmonized with GTDB, LPSN and BacDive.", records: 625960, unit: "taxon records", root: "TaxonRecord", vocab: ["NCBITaxon", "GTDB", "LPSN", "BacDive", "NCBI Assembly"], github: "https://github.com/CultureBotAI/TaxonMech", site: "https://culturebotai.github.io/TaxonMech/", page: "", license: "CC0-1.0", sources: "NCBI Taxonomy, GTDB, LPSN, BacDive, MediaDive, GOLD, Madin and BactoTraits through kg-microbe transforms", extra: "625,960 taxa, 100,745 distinct listed strains and 20,648 taxa with a type strain. A dedicated page lists the taxa carrying a type strain, and another states the corpus's sources." }, TraitMech: { key: "traitmech", scale: "Traits", tag: "Microbial ecophysiological trait knowledge base, seeded from METPO, one curated YAML per trait.", records: 696, unit: "trait records", root: "TraitRecord", vocab: ["METPO", "GO", "NCBITaxon", "CHEBI", "UniProt"], github: "https://github.com/CultureBotAI/TraitMech", site: "https://culturebotai.github.io/TraitMech/", page: "", license: "CC0-1.0", sources: "METPO (vendored OWL), GapMind and GTDB genome tables as candidates", extra: "696 traits across 10 categories; 68.5% embedded. Browse definitions, causal graphs, kg-microbe matches and nearest neighbors, or explore PaCMAP and graph layouts." }, CellStructureMech: { key: "cellstructuremech", scale: "Cell structures", tag: "Ontology-grounded microbial cell structures: components, distribution, function and causal mechanism.", records: 421, unit: "structure records", root: "CellStructureRecord", vocab: ["GO", "NCBITaxon", "UniProt", "METPO", "Pfam"], github: "https://github.com/CultureBotAI/CellStructureMech", site: "https://culturebotai.github.io/CellStructureMech/", page: "", license: "CC0-1.0", sources: "GO cellular component, UniProt subcellular location, Complex Portal, EMDB/EMPIAR, PDB, TraitMech", extra: "421 structures across 13 categories, including 177 membrane organelles; 367 records are GO-grounded. Browse by category, kind and grounding status." }, ProteinTraitsMech: { key: "proteintraitsmech", scale: "Proteins", tag: "Protein sequence, structure and function trait classes, one curated YAML per trait, evidence-backed.", records: 429291, unit: "protein trait records", root: "ProteinTraitRecord", vocab: ["InterPro", "UniProt", "RHEA", "Pfam", "GO", "CHEBI", "ARO"], github: "https://github.com/CultureBotAI/proteintraitsmech", site: "https://culturebotai.github.io/proteintraitsmech/", page: "", license: "CC0-1.0", sources: "InterPro, Pfam, CATH, SCOPe, ECOD, Rhea, ExPASy ENZYME, CARD/ARO, PROSITE, TCDB, COG, Reactome, METPO", extra: "118,281 structure, 147,091 sequence, 384 sequence-structure, 163,526 function and 9 evolution records. The corpus map uses text embeddings; a separate protein map covers 68,657 Swiss-Prot proteins." }, - NaturalProductMech: { key: "naturalproductmech", scale: "Natural products", tag: "One record per natural product structure: who makes it, from which gene cluster, and what it does.", records: 3115, unit: "natural product structures", root: "NaturalProductRecord", vocab: ["MIBiG", "NCBITaxon", "ChEBI", "NPAtlas", "PubChem", "UniProt"], github: "https://github.com/CultureBotAI/NaturalProductMech", site: "https://culturebotai.github.io/NaturalProductMech/", page: "", license: "CC0-1.0 code · CC BY 4.0 data", sources: "ChEBI, MIBiG gene clusters, LOTUS occurrences, CyanoMetDB, NPAtlas, PubChem BioAssay, BindingDB, NCBI Taxonomy", extra: "3,407 producer claims, including 805 supported by evidence addressing the organism; 2,342 records carry cited occurrences. Structure and corpus maps complement the record browser." }, + NaturalProductMech: { key: "naturalproductmech", scale: "Natural products", tag: "One record per natural product structure: who makes it, from which gene cluster, and what it does.", records: 3115, unit: "natural product structures", root: "NaturalProductRecord", vocab: ["MIBiG", "NCBITaxon", "ChEBI", "NPAtlas", "PubChem", "UniProt"], github: "https://github.com/CultureBotAI/NaturalProductMech", site: "https://culturebotai.github.io/NaturalProductMech/", page: "", license: "CC0-1.0 code · CC BY 4.0 data", sources: "ChEBI, MIBiG gene clusters, LOTUS occurrences, CyanoMetDB, NPClassifier, PubChem BioAssay, BindingDB, NCBI Taxonomy, AntibioticMech", extra: "3,407 producer claims, including 805 supported by evidence addressing the organism; 2,342 records carry cited occurrences. Structure and corpus maps complement the record browser." }, AntibioticMech: { key: "antibioticmech", scale: "Antibiotics", tag: "One record per antimicrobial structure, harmonizing ChEBI and CARD with mechanism and evidence.", records: 2939, unit: "antimicrobial structures", root: "AntibioticRecord", vocab: ["CHEBI", "ARO", "CAS", "NCBITaxon", "PubChem", "DrugBank"], github: "https://github.com/CultureBotAI/AntibioticMech", site: "https://culturebotai.github.io/AntibioticMech/", page: "", license: "CC0-1.0 code · CC BY 4.0 data", sources: "ChEBI 3-star antimicrobial roles, CARD/ARO antibiotic molecules, PubChem structures, PHI-base, MIBiG", extra: "2,669 ontology-grounded and 270 minted identities; 454 records with mode of action, 282 with molecular targets and 16 with causal graphs. The chemical map places all 2,939 records by chiral molecular fingerprints." }, MediaIngredientMech: { key: "mediaingredientmech", scale: "Ingredients", tag: "LLM-assisted curation of media-ingredient ontology mappings with full audit trails.", records: 2951, unit: "ingredient records", root: "IngredientRecord", vocab: ["CHEBI", "CAS", "NCIT", "FOODON", "ENVO"], github: "https://github.com/CultureBotAI/MediaIngredientMech", site: "https://culturebotai.github.io/MediaIngredientMech/", page: "/mediaingredientmech/", license: "CC0-1.0", sources: "Ingredient strings aggregated from CultureMech recipes; OAK/OLS term services; ChEBI, FOODON, NCIT, MeSH, METPO", extra: "2,616 of 2,951 ingredients mapped (89%). Search by mapping status and quality, or explore ingredient PaCMAP and graph layouts." }, CultureMech: { key: "culturemech", scale: "Media", tag: "Versioned, ontology-grounded knowledge base of microbial culture-media recipes.", records: 6286, unit: "canonical media", root: "MediaRecipe", vocab: ["CHEBI", "KEGG", "FOODON", "UBERON", "CAS"], github: "https://github.com/CultureBotAI/CultureMech", site: "https://culturebotai.github.io/CultureMech/", page: "/culturemech/", license: "CC0-1.0", sources: "MediaDive/DSMZ, TogoMedium, KOMODO, ATCC, JCM, BacDive (queued)", extra: "6,286 deduplicated canonical media, merged from 15,878 source-specific normalized records that the published browser serves across five categories, with filters for target organisms and ingredients. Explore derived ingredient-based and direct medium-node embeddings, plus a graph layout." } @@ -964,7 +964,7 @@ Each card carries its Mech's own site color. Hover a card to trace its ties in t Alongside record browsing, the Mechs publish complementary ways to explore their data: -- **Taxa and strains:** TaxonMech links [StrainInfo deposits](https://culturebotai.github.io/TaxonMech/pages/straininfo.html) to taxon identities and genome evidence. +- **Taxa and strains:** TaxonMech lists the [20,648 taxa with a type strain](https://culturebotai.github.io/TaxonMech/pages/type-strains.html), each naming the BacDive deposit that LPSN records as the type, and states its [sources](https://culturebotai.github.io/TaxonMech/pages/sources.html). - **Community, trait and media similarity:** explore [CommunityMech](https://culturebotai.github.io/CommunityMech/community_umap.html), [TraitMech](https://culturebotai.github.io/TraitMech/pages/umap.html), [ingredients](https://culturebotai.github.io/MediaIngredientMech/ingredient_umap.html) and [culture media](https://culturebotai.github.io/CultureMech/app/umap.html) through their embedding browsers. - **Protein traits and proteins:** ProteinTraitsMech separates its [text-embedding corpus map](https://culturebotai.github.io/proteintraitsmech/map.html) from its [map of 68,657 Swiss-Prot proteins](https://culturebotai.github.io/proteintraitsmech/map.html#proteins). - **Chemical structures:** compare compounds in the [AntibioticMech chemical map](https://culturebotai.github.io/AntibioticMech/pages/chemical-map.html) and the [NaturalProductMech structure map](https://culturebotai.github.io/NaturalProductMech/pages/chemical-map.html); NaturalProductMech also offers a [corpus map](https://culturebotai.github.io/NaturalProductMech/pages/map.html). diff --git a/research.md b/research.md index 0054a42..6ee8a6c 100644 --- a/research.md +++ b/research.md @@ -107,7 +107,7 @@ Our research goals are enabled by a suite of interconnected software tools: - [MATE-LLM](/resources/#mate-llm) - Literature protocol extraction with LLMs *(private repo, public release planned)* ### For Culture Optimization -- [CultureMech](/culturemech/) - Microbial culture media knowledge graph, 6,286 canonical media from 15,877 curated recipes +- [CultureMech](/culturemech/) - Microbial culture media knowledge graph, 6,286 canonical media from 15,878 curated recipes - [MediaIngredientMech](/mediaingredientmech/) - LLM-assisted ingredient curation and ontology mapping - [MicroMediaParam](/resources/#micromediaparam) - Media composition analysis and mapping - [microbe-rules](/resources/#microbe-rules-machine-learning-models-for-microbial-data) - ML model optimization and comparison diff --git a/resources.md b/resources.md index 7f64088..d26ce00 100644 --- a/resources.md +++ b/resources.md @@ -152,7 +152,7 @@ AI Predictions (MicroGrowAgents, MicroGrowLink) ### CultureMech - Microbial Culture Media Knowledge Graph **[Dedicated Page](/culturemech/)** | **[GitHub Repository](https://github.com/CultureBotAI/CultureMech)** | **[Web Interface](https://culturebotai.github.io/CultureMech/)** | CC0-1.0 License -15,877 curated culture media recipes from major international repositories, deduplicated into 6,286 canonical media, with LinkML schema, ontology grounding (ChEBI, PubChem), and browser-based exploration. +15,878 curated culture media recipes from major international repositories, deduplicated into 6,286 canonical media, with LinkML schema, ontology grounding (ChEBI, PubChem), and browser-based exploration. **What it does**: Extracts chemical entities from unstructured media composition text and grounds them to standard chemical ontologies. @@ -229,7 +229,7 @@ Knowledge base of protein sequence, structure, and function traits — 429,291 L 2,939 antimicrobial chemical structures, 2,669 ontology-grounded, harmonizing ChEBI's antimicrobial roles with CARD/ARO molecules, targets and resistance determinants. -**What it does**: Records one entry per antimicrobial structure with its mode of action, molecular targets and the evidence for both, and places all 2,939 on a chemical map by molecular fingerprint. +**What it does**: Records one entry per antimicrobial structure, carrying its mode of action, molecular targets and the evidence for both where curation has supplied them — 454 records have a mode of action and 282 a molecular target so far — and places all 2,939 on a chemical map by molecular fingerprint. --- @@ -238,7 +238,7 @@ Knowledge base of protein sequence, structure, and function traits — 429,291 L 3,115 natural product structures, one per Standard InChIKey, seeded from nine sources and grounded in ChEBI, MIBiG and NCBI Taxonomy. -**What it does**: Links each structure to its producer organisms, biosynthetic gene clusters, occurrences and bioactivities, with cited evidence for each claim. Records are seeded; curation has not yet started. +**What it does**: Links every structure to the biosynthetic gene cluster it comes from (3,115 of 3,115) and to its producer organisms (3,076), and carries cited occurrences (2,342) and measured bioactivities (176) where a source reports them. Producer claims are graded: of 3,407, only 805 rest on evidence that addressed the organism. Records are seeded; curation has not yet started. --- @@ -399,7 +399,7 @@ Comprehensive chemical compound knowledge graph mapping pipeline for microbial g #### CultureMech **[Dedicated Page](/culturemech/)** | **[GitHub Repository](https://github.com/CultureBotAI/CultureMech)** | **[Web Interface](https://culturebotai.github.io/CultureMech/)** | CC0-1.0 License -15,877 curated culture media recipes deduplicated into 6,286 canonical media, with chemical entity extraction and ontology grounding. Part of the X-Mech AI curation suite. +15,878 curated culture media recipes deduplicated into 6,286 canonical media, with chemical entity extraction and ontology grounding. Part of the X-Mech AI curation suite. **→ See the [dedicated CultureMech page](/culturemech/) for full documentation, use cases, and examples.** diff --git a/tests/test_fleet_page.py b/tests/test_fleet_page.py index 24f58a1..b082cf6 100644 --- a/tests/test_fleet_page.py +++ b/tests/test_fleet_page.py @@ -11,6 +11,7 @@ sys.path.insert(0, str(ROOT / "scripts/fleet")) from assemble_page import CARD_RECORDS, assemble, capability_rows, script_json from refresh_manifest import ARTIFACT_PATH, MANIFEST_PATH, read_canonical, semantic, validate +import roots class FleetPageTests(unittest.TestCase): @@ -166,5 +167,59 @@ def git(*args): self.assertEqual(result['source']['revision'], git('rev-parse', 'HEAD').strip()) +class RecordPathTests(unittest.TestCase): + """record_paths() decides what counts as a record, so the page's numbers start here.""" + + def resolve(self, name, layout, excluded=None): + """Run record_paths() against a throwaway checkout with the given files.""" + with tempfile.TemporaryDirectory() as directory: + root = Path(directory) + for relative in layout: + target = root / name / relative + target.parent.mkdir(parents=True, exist_ok=True) + target.write_text('id: x\n') + patched = { + 'MECHS_ROOT': str(root), + 'EXCLUDE_DIRS': dict(roots.EXCLUDE_DIRS if excluded is None else excluded), + } + original = {key: getattr(roots, key) for key in patched} + for key, value in patched.items(): + setattr(roots, key, value) + try: + return [str(Path(p).relative_to(root / name)) for p in roots.record_paths(name)] + finally: + for key, value in original.items(): + setattr(roots, key, value) + + def test_backups_are_not_ingredient_records(self): + # Six timestamped copies under mapped/backups/ were being counted as + # records, and their prefixes double-counted in the heatmap (#88). + found = self.resolve('MediaIngredientMech', [ + 'data/ingredients/mapped/glucose.yaml', + 'data/ingredients/unmapped/peptone.yaml', + 'data/ingredients/mapped/backups/glucose_20260807_213601.yaml', + ]) + self.assertEqual(found, ['data/ingredients/mapped/glucose.yaml', + 'data/ingredients/unmapped/peptone.yaml']) + + def test_exclusion_matches_a_directory_not_a_name_prefix(self): + # "backups/" must not also swallow a sibling called "backups_archive". + found = self.resolve('MediaIngredientMech', [ + 'data/ingredients/mapped/glucose.yaml', + 'data/ingredients/mapped/backups_archive/kept.yaml', + ]) + self.assertIn('data/ingredients/mapped/backups_archive/kept.yaml', found) + + def test_a_corpus_emptied_by_exclusion_is_an_error_not_a_zero(self): + # An empty result is indistinguishable from a corpus that vanished, so + # record_paths() refuses to return one however it was emptied. + with self.assertRaises(SystemExit): + self.resolve('MediaIngredientMech', + ['data/ingredients/mapped/backups/only_a_backup.yaml']) + + def test_every_excluded_mech_is_one_the_census_actually_reads(self): + # A renamed Mech would leave a dead entry here that silently does nothing. + self.assertLessEqual(set(roots.EXCLUDE_DIRS), set(roots.RECORD_GLOBS)) + if __name__ == '__main__': unittest.main() From 826235de9338d64bf7f1ab950cde3b5a9c16730a Mon Sep 17 00:00:00 2001 From: "marcin p. joachimiak" <4625870+realmarcin@users.noreply.github.com> Date: Sun, 20 Sep 2026 16:33:32 -0700 Subject: [PATCH 3/3] Finish the ten-Mech sweep, and unbreak two table-of-contents links MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The sweep stopped at the X-Mech pages. Three enumerations elsewhere were still short (#90), the most visible by far being the site-wide footer, which named five Mechs and linked no hub — on every page of the site. It now names all ten and ends with a link to /mechs/, which also gives the two task-organized tool lists (kg-microbe.md, research.md) a route to the hub without distorting them: those group tools by what a reader is trying to do, so "all ten under For Culture Optimization" would be wrong, and they are left alone deliberately. The separator before MicroGrowAgents, which marks it as the one entry that is not a Mech, needed a margin of its own. The anchors around it carry .55rem leading and .1rem trailing, so an unstyled separator sits 5.3px from the link on its left and 12.6px from the one on its right, reading as part of the hub link rather than as a divider. Measured in a headless browser against the real stylesheet: .45rem evens it to 12.5px on both sides. microgrowagents.md's Related Tools named five Mechs and now names ten. The bibliography entry in publications.md enumerates the organization's repositories, so it names all ten and the orchestrator rather than the same five, and links the hub. Both Quick Navigation anchors for emoji headings were dead (#91). The repo already documents that an emoji heading renders with a leading hyphen in its id, and the deployed HTML confirms it: `## 🔬 Advanced Research Tools` emits `-advanced-research-tools`, where the link said `#advanced-research-tools`. `## 🛠️ Developer Resources` is the awkward one. Its emoji carries a variation selector, and GitHub Pages keeps that codepoint while dropping the glyph, so the live id is U+FE0F followed by `-developer-resources` — an anchor beginning with an invisible character. Dropping the selector from the heading should make it the ordinary `-developer-resources`, matching what the 🔬 heading already emits. That one is an inference from the parallel case rather than something this branch can prove: a locally installed kramdown reports different ids, so it needs checking against the deployed page after merge. Seven of the eight anchors now resolve against the live HTML; the eighth is the one whose heading this commit changes. Co-Authored-By: Claude Opus 5 (1M context) --- _includes/footer.html | 13 ++++++++++--- assets/custom.css | 5 +++++ microgrowagents.md | 10 ++++++++-- publications.md | 2 +- resources.md | 6 +++--- 5 files changed, 27 insertions(+), 9 deletions(-) diff --git a/_includes/footer.html b/_includes/footer.html index 2c8a215..5d13d39 100644 --- a/_includes/footer.html +++ b/_includes/footer.html @@ -23,12 +23,19 @@

{{ site.title | escape }}

- KG-Microbe Mechs: - CultureMech - MediaIngredientMech + X-Mech Suite: + TaxonMech + HabitatMech CommunityMech TraitMech + CellStructureMech ProteinTraitsMech + NaturalProductMech + AntibioticMech + MediaIngredientMech + CultureMech + All ten → + · MicroGrowAgents

diff --git a/assets/custom.css b/assets/custom.css index 4627f1e..a2fe651 100644 --- a/assets/custom.css +++ b/assets/custom.css @@ -604,6 +604,11 @@ strong { color: var(--ink); font-weight: 700; } .site-footer .footer-family span { color: var(--muted); font-weight: 600; } +/* The separator sits between two inline-block anchors whose margins are not + symmetric (.55rem leading, .1rem trailing), which pulls the dot onto the + link to its left. This restores an even gap on both sides. */ +.site-footer .footer-family .sep { margin-left: .45rem; } + .site-footer .footer-family a { display: inline-block; margin: .15rem .1rem .15rem .55rem; diff --git a/microgrowagents.md b/microgrowagents.md index 793567c..a0556b2 100644 --- a/microgrowagents.md +++ b/microgrowagents.md @@ -85,11 +85,17 @@ Organism-Specific Media Recommendation ## Related Tools -- **[CultureMech](/culturemech/)** - Microbial culture media knowledge graph (6,286 canonical media) -- **[MediaIngredientMech](/mediaingredientmech/)** - LLM-assisted ingredient ontology mapping +- **[X-Mech Suite overview](/mechs/)** - All ten Mechs, their shared vocabulary and cross-references, and the culturebotai-claw orchestrator +- **[TaxonMech](https://culturebotai.github.io/TaxonMech/)** - Microbial taxa and strains grounded in NCBI Taxonomy, harmonized with GTDB, LPSN and BacDive +- **[HabitatMech](https://culturebotai.github.io/HabitatMech/)** - Habitats harmonized from GOLD, BacDive, PREGO and Madin et al. into ENVO-grounded records - **[CommunityMech](/communitymech/)** - Microbial community interaction modeling - **[TraitMech](https://culturebotai.github.io/TraitMech/)** - Microbial ecophysiological trait knowledge base +- **[CellStructureMech](https://culturebotai.github.io/CellStructureMech/)** - Microbial cell structures, between the trait and protein layers - **[ProteinTraitsMech](https://culturebotai.github.io/proteintraitsmech/)** - Protein sequence, structure, and function traits +- **[NaturalProductMech](https://culturebotai.github.io/NaturalProductMech/)** - Natural product structures with their producer organisms and gene clusters +- **[AntibioticMech](https://culturebotai.github.io/AntibioticMech/)** - Antimicrobial structures harmonizing ChEBI and CARD/ARO +- **[MediaIngredientMech](/mediaingredientmech/)** - LLM-assisted ingredient ontology mapping +- **[CultureMech](/culturemech/)** - Microbial culture media knowledge graph (6,286 canonical media) - **[MicroGrowLink](/resources/#microgrowlink)** - Graph-based growth media prediction - **[kg-microbe](/kg-microbe/)** - Central knowledge graph for microbial cultivation diff --git a/publications.md b/publications.md index 8a355b3..2ea9162 100644 --- a/publications.md +++ b/publications.md @@ -36,7 +36,7 @@ Every publication, preprint, and software record from this work, with resolvable License: BSD-3-Clause. See [KG-Microbe](/kg-microbe/). -6. CultureBotAI organization repositories — CultureMech, MediaIngredientMech, CommunityMech, TraitMech, and ProteinTraitsMech. [github.com/CultureBotAI](https://github.com/CultureBotAI). Each repository carries its own citation and license; see [Resources](/resources/). +6. CultureBotAI organization repositories — the X-Mech suite (CultureMech, MediaIngredientMech, CommunityMech, TraitMech, ProteinTraitsMech, AntibioticMech, CellStructureMech, HabitatMech, NaturalProductMech, TaxonMech) and the culturebotai-claw orchestrator. [github.com/CultureBotAI](https://github.com/CultureBotAI) · [suite overview](/mechs/). Each repository carries its own citation and license; see [Resources](/resources/). 7. **Joachimiak MP**. KG-Microbe — Building Modular and Scalable Knowledge Graphs for Microbiome and Microbial Sciences [workflow]. WorkflowHub; v1. [doi:10.48546/workflowhub.workflow.2044.1](https://doi.org/10.48546/workflowhub.workflow.2044.1) · [WorkflowHub 2044](https://workflowhub.eu/workflows/2044) diff --git a/resources.md b/resources.md index d26ce00..3361b72 100644 --- a/resources.md +++ b/resources.md @@ -20,8 +20,8 @@ CultureBotAI led by Dr. Marcin P. Joachimiak develops and maintains various comp - [Genome Analysis](#data-processing--analysis) - eggnog_runner, eggnogtable - [Literature Mining](#ai-agent-systems) - MATE-LLM - [Specialized Research](#specialized-research-pipelines) - PFAS, Lanthanide bioprocessing -- [Advanced Research Tools](#advanced-research-tools) - Neurosymbolic reasoning, term extraction (NEW!) -- [Developer Resources](#developer-resources) - Claude Code skills, APIs (NEW!) +- [Advanced Research Tools](#-advanced-research-tools) - Neurosymbolic reasoning, term extraction (NEW!) +- [Developer Resources](#-developer-resources) - Claude Code skills, APIs (NEW!) **Want to see workflows?** Jump to [Common Workflows](#common-workflows) @@ -619,7 +619,7 @@ Code for extracting AUTO terms from ontoGPT output. Processes ontology-based tex --- -## 🛠️ Developer Resources +## 🛠 Developer Resources #### culturebot-skills - Claude Code Skills **[GitHub Repository](https://github.com/CultureBotAI/culturebot-skills)** | Skills/Configuration