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@@ -764,23 +764,23 @@ <h2 class="sec-title">Scientific work,<br>connected across your stack</h2>
   <h2 class="sec-title">Reference knowledge,<br>one query away</h2>
   <p class="sec-sub">Reference-database plugins give scientists and AI agents read-only access to the genomic, clinical, protein, chemical and ontology resources that analyses depend on, from variant interpretation to target discovery.</p>
   <div class="int-summary">
-    <span class="int-total"><strong>130</strong> reference databases across <strong>9</strong> categories · 107 implemented · 23 scaffolded</span>
+    <span class="int-total"><strong>129</strong> reference databases across <strong>9</strong> categories · 126 implemented · 1 licence-required · 2 scaffolded</span>
     <a href="https://docs.omnibioai.org/reference-data/database-catalog/" target="_blank" class="int-docs-link">Browse the full catalog in the docs ↗</a>
   </div>
   <div class="int-filters" role="group" aria-label="Filter reference databases by category">
-    <button type="button" class="int-filter" data-group="all" aria-pressed="true">All <span>130</span></button>
-    <button type="button" class="int-filter" data-group="genes-variants" aria-pressed="false">Genes, Variants &amp; Clinical Genetics <span>40</span></button>
+    <button type="button" class="int-filter" data-group="all" aria-pressed="true">All <span>129</span></button>
+    <button type="button" class="int-filter" data-group="genes-variants" aria-pressed="false">Genes, Variants &amp; Clinical Genetics <span>38</span></button>
     <button type="button" class="int-filter" data-group="expression-omics" aria-pressed="false">Expression, Omics &amp; Cohorts <span>19</span></button>
     <button type="button" class="int-filter" data-group="proteins-structure" aria-pressed="false">Proteins, Structure &amp; Interactions <span>18</span></button>
     <button type="button" class="int-filter" data-group="drugs-chemistry" aria-pressed="false">Drugs, Chemistry &amp; Metabolomics <span>20</span></button>
-    <button type="button" class="int-filter" data-group="ontologies-phenotype" aria-pressed="false">Ontologies, Disease &amp; Phenotype <span>12</span></button>
+    <button type="button" class="int-filter" data-group="ontologies-phenotype" aria-pressed="false">Ontologies, Disease &amp; Phenotype <span>11</span></button>
     <button type="button" class="int-filter" data-group="model-organisms" aria-pressed="false">Model Organisms <span>7</span></button>
     <button type="button" class="int-filter" data-group="regulation-ncrna" aria-pressed="false">Non-coding RNA &amp; Regulation <span>6</span></button>
-    <button type="button" class="int-filter" data-group="pathways" aria-pressed="false">Pathways <span>6</span></button>
+    <button type="button" class="int-filter" data-group="pathways" aria-pressed="false">Pathways <span>8</span></button>
     <button type="button" class="int-filter" data-group="cross-domain" aria-pressed="false">Clinical Trials &amp; Models <span>2</span></button>
   </div>
   <div class="int-group" data-group="genes-variants">
-    <div class="int-group-head"><h3 class="int-group-title">Genes, Variants &amp; Clinical Genetics</h3><span class="int-group-count">40</span><p class="int-group-sub">Gene nomenclature and annotation, population and structural variation, and clinical-genetics evidence.</p></div>
+    <div class="int-group-head"><h3 class="int-group-title">Genes, Variants &amp; Clinical Genetics</h3><span class="int-group-count">38</span><p class="int-group-sub">Gene nomenclature and annotation, population and structural variation, and clinical-genetics evidence.</p></div>
     <div class="int-grid">
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">1000 Genomes / IGSR</span><span class="int-desc">Population samples, data collections and files</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">CIViC</span><span class="int-desc">Cancer variant evidence items and assertions</span></a>
@@ -801,36 +801,39 @@ <h2 class="sec-title">Reference knowledge,<br>one query away</h2>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">GWAS Catalog</span><span class="int-desc">Studies, traits and reported associations</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">HGMD</span><span class="int-desc">Licensed clinical variants via a local or gateway provider</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">HGNC</span><span class="int-desc">Approved human gene symbols and names</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">LOVD</span><span class="int-desc">Locus-specific variant databases</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">MARRVEL</span><span class="int-desc">Rare-variant evidence across model organisms</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">Mastermind</span><span class="int-desc">Variant evidence from the literature</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">MaveDB</span><span class="int-desc">Multiplexed assays of variant effect scores</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">MedGen</span><span class="int-desc">Medical-genetics concepts, genes and features</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">NCBI Entrez</span><span class="int-desc">Gene, protein, nucleotide and taxonomy search</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">OMIM</span><span class="int-desc">Mendelian genes, disorders and inheritance</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">OncoKB</span><span class="int-desc">Precision-oncology variant knowledge</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">PharmGKB</span><span class="int-desc">Pharmacogenomic annotations via ClinPGx</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">PharmVar</span><span class="int-desc">Pharmacogene star alleles and haplotypes</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">PheGenI</span><span class="int-desc">Phenotype–genotype associations from NCBI</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">SNPedia</span><span class="int-desc">Community variant and genotype annotations</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">TOPMed</span><span class="int-desc">Deep-sequencing variant frequencies</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">UCSC Genome Browser</span><span class="int-desc">Genome databases, tracks and region data</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">VarCards</span><span class="int-desc">Availability status only; no data access</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">VarSome</span><span class="int-desc">Variant classification and annotation</span></a>
       <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">Clinvitae <span class="int-tag">scaffold</span></span><span class="int-desc">Aggregated clinical variant reports</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">GeneCards <span class="int-tag">scaffold</span></span><span class="int-desc">Integrated human gene summaries</span></a>
+      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">GeneCards <span class="int-tag">licence required</span></span><span class="int-desc">Commercial licence required; not connected</span></a>
       <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">GWAS Summary Statistics <span class="int-tag">scaffold</span></span><span class="int-desc">Full summary statistics for GWAS</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">LOVD <span class="int-tag">scaffold</span></span><span class="int-desc">Locus-specific variant databases</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">Mastermind <span class="int-tag">scaffold</span></span><span class="int-desc">Variant evidence from the literature</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">NCBI Gene <span class="int-tag">scaffold</span></span><span class="int-desc">Gene records and annotation</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">OncoKB <span class="int-tag">scaffold</span></span><span class="int-desc">Precision-oncology variant knowledge</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">RefSeq <span class="int-tag">scaffold</span></span><span class="int-desc">NCBI reference sequences</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">TOPMed <span class="int-tag">scaffold</span></span><span class="int-desc">Deep-sequencing variant frequencies</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">VarCards <span class="int-tag">scaffold</span></span><span class="int-desc">Integrated coding-variant annotation</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#genes-variants--clinical-genetics-40" target="_blank"><span class="int-name">VarSome <span class="int-tag">scaffold</span></span><span class="int-desc">Variant classification and annotation</span></a>
     </div>
   </div>
   <div class="int-group" data-group="expression-omics">
     <div class="int-group-head"><h3 class="int-group-title">Expression, Omics &amp; Cohorts</h3><span class="int-group-count">19</span><p class="int-group-sub">Sequencing archives, expression atlases, samples, cell lines and cancer cohorts.</p></div>
     <div class="int-grid">
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">All of Us</span><span class="int-desc">Controlled-access research cohort</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">ArrayExpress</span><span class="int-desc">Functional-genomics experiments from EMBL-EBI</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">cBioPortal</span><span class="int-desc">Cancer genomics studies and mutations</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">CCLE</span><span class="int-desc">Cancer cell-line omics profiles</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">Cellosaurus</span><span class="int-desc">Cell-line identity, origin and hierarchy</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">dbGaP</span><span class="int-desc">Controlled-access genotype–phenotype studies</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">DepMap</span><span class="int-desc">Cancer dependency and CRISPR screens</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">EBI BioSamples</span><span class="int-desc">Cross-repository sample registry</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">EGA</span><span class="int-desc">Controlled-access genome–phenome archive</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">ENA</span><span class="int-desc">Sequencing studies, samples, runs and analyses</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">Expression Atlas</span><span class="int-desc">Baseline and differential expression across species</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">GTEx</span><span class="int-desc">Tissue expression and eQTLs from the GTEx Portal</span></a>
@@ -840,12 +843,7 @@ <h2 class="sec-title">Reference knowledge,<br>one query away</h2>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">NCBI SRA</span><span class="int-desc">Sequence Read Archive studies, runs and samples</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">PanglaoDB</span><span class="int-desc">Single-cell cell-type marker genes</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">TCGA</span><span class="int-desc">Open-access TCGA cases, files and mutations via GDC</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">All of Us <span class="int-tag">scaffold</span></span><span class="int-desc">Controlled-access research cohort</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">CCLE <span class="int-tag">scaffold</span></span><span class="int-desc">Cancer cell-line omics profiles</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">dbGaP <span class="int-tag">scaffold</span></span><span class="int-desc">Controlled-access genotype–phenotype studies</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">DepMap <span class="int-tag">scaffold</span></span><span class="int-desc">Cancer dependency and CRISPR screens</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">EGA <span class="int-tag">scaffold</span></span><span class="int-desc">Controlled-access genome–phenome archive</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">UK Biobank <span class="int-tag">scaffold</span></span><span class="int-desc">Controlled-access population cohort</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#expression-omics--cohorts-19" target="_blank"><span class="int-name">UK Biobank</span><span class="int-desc">Controlled-access population cohort</span></a>
     </div>
   </div>
   <div class="int-group" data-group="proteins-structure">
@@ -891,13 +889,13 @@ <h2 class="sec-title">Reference knowledge,<br>one query away</h2>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#drugs-chemistry--metabolomics-20" target="_blank"><span class="int-name">Pharos</span><span class="int-desc">Drug targets by development level, ligands and diseases</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#drugs-chemistry--metabolomics-20" target="_blank"><span class="int-name">PubChem</span><span class="int-desc">Compounds, substances and bioassays</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#drugs-chemistry--metabolomics-20" target="_blank"><span class="int-name">RxNorm</span><span class="int-desc">Normalized drug names, NDCs and drug classes</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#drugs-chemistry--metabolomics-20" target="_blank"><span class="int-name">SIDER</span><span class="int-desc">SIDER 4.1 drug-name search over operator-supplied release files</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#drugs-chemistry--metabolomics-20" target="_blank"><span class="int-name">SwissLipids</span><span class="int-desc">Curated lipid structures and metabolism</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#drugs-chemistry--metabolomics-20" target="_blank"><span class="int-name">SIDER <span class="int-tag">scaffold</span></span><span class="int-desc">Marketed drug side effects</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#drugs-chemistry--metabolomics-20" target="_blank"><span class="int-name">T3DB <span class="int-tag">scaffold</span></span><span class="int-desc">Toxins and their targets</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#drugs-chemistry--metabolomics-20" target="_blank"><span class="int-name">T3DB</span><span class="int-desc">Availability status only; no data access</span></a>
     </div>
   </div>
   <div class="int-group" data-group="ontologies-phenotype">
-    <div class="int-group-head"><h3 class="int-group-title">Ontologies, Disease &amp; Phenotype</h3><span class="int-group-count">12</span><p class="int-group-sub">Biomedical ontologies, phenotype vocabularies and gene–disease association resources.</p></div>
+    <div class="int-group-head"><h3 class="int-group-title">Ontologies, Disease &amp; Phenotype</h3><span class="int-group-count">11</span><p class="int-group-sub">Biomedical ontologies, phenotype vocabularies and gene–disease association resources.</p></div>
     <div class="int-grid">
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#ontologies--phenotype-12" target="_blank"><span class="int-name">BioPortal</span><span class="int-desc">Search across hundreds of biomedical ontologies</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#ontologies--phenotype-12" target="_blank"><span class="int-name">Cell Ontology</span><span class="int-desc">Cell-type terms via EBI OLS</span></a>
@@ -910,7 +908,6 @@ <h2 class="sec-title">Reference knowledge,<br>one query away</h2>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#ontologies--phenotype-12" target="_blank"><span class="int-name">Mondo</span><span class="int-desc">Disease terms mapped to OMIM, Orphanet, DOID and ICD</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#ontologies--phenotype-12" target="_blank"><span class="int-name">Open Targets</span><span class="int-desc">Target–disease evidence and prioritisation</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#ontologies--phenotype-12" target="_blank"><span class="int-name">Orphanet</span><span class="int-desc">Rare diseases, genes and epidemiology</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#ontologies--phenotype-12" target="_blank"><span class="int-name">Orphadata <span class="int-tag">scaffold</span></span><span class="int-desc">Orphanet rare-disease data products</span></a>
     </div>
   </div>
   <div class="int-group" data-group="model-organisms">
@@ -928,23 +925,25 @@ <h2 class="sec-title">Reference knowledge,<br>one query away</h2>
   <div class="int-group" data-group="regulation-ncrna">
     <div class="int-group-head"><h3 class="int-group-title">Non-coding RNA &amp; Regulation</h3><span class="int-group-count">6</span><p class="int-group-sub">Regulatory elements, transcription-factor binding profiles and non-coding RNA.</p></div>
     <div class="int-grid">
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#non-coding-rna--regulation-6" target="_blank"><span class="int-name">dbMTS</span><span class="int-desc">Availability status only; no data access</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#non-coding-rna--regulation-6" target="_blank"><span class="int-name">ENCODE</span><span class="int-desc">Experiments, biosamples and regulatory files</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#non-coding-rna--regulation-6" target="_blank"><span class="int-name">JASPAR</span><span class="int-desc">Transcription-factor binding profiles</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#non-coding-rna--regulation-6" target="_blank"><span class="int-name">miRBase</span><span class="int-desc">Mature and precursor miRNA sequences</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#non-coding-rna--regulation-6" target="_blank"><span class="int-name">Rfam</span><span class="int-desc">Non-coding RNA families and clans</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#non-coding-rna--regulation-6" target="_blank"><span class="int-name">TargetScan</span><span class="int-desc">miRNA target-site predictions, indexed locally</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#non-coding-rna--regulation-6" target="_blank"><span class="int-name">dbMTS <span class="int-tag">scaffold</span></span><span class="int-desc">Variants in miRNA target sites</span></a>
     </div>
   </div>
   <div class="int-group" data-group="pathways">
-    <div class="int-group-head"><h3 class="int-group-title">Pathways</h3><span class="int-group-count">6</span><p class="int-group-sub">Curated pathway and metabolic-network knowledgebases.</p></div>
+    <div class="int-group-head"><h3 class="int-group-title">Pathways</h3><span class="int-group-count">8</span><p class="int-group-sub">Curated pathway and metabolic-network knowledgebases.</p></div>
     <div class="int-grid">
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#pathways-6" target="_blank"><span class="int-name">BioCyc</span><span class="int-desc">Pathway/genome databases</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#pathways-6" target="_blank"><span class="int-name">KEGG</span><span class="int-desc">Pathways, orthology, enzymes and compounds</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#pathways-6" target="_blank"><span class="int-name">MetaCyc</span><span class="int-desc">Metabolic pathways, reactions and compounds</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#pathways-6" target="_blank"><span class="int-name">MSigDB</span><span class="int-desc">Annotated gene-set collections</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#pathways-6" target="_blank"><span class="int-name">Pathway Commons</span><span class="int-desc">Integrated pathway and interaction data (BioPAX)</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#pathways-6" target="_blank"><span class="int-name">Reactome</span><span class="int-desc">Pathways, reactions and gene mapping</span></a>
+      <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#pathways-6" target="_blank"><span class="int-name">Rhea</span><span class="int-desc">Curated biochemical reactions (SIB)</span></a>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#pathways-6" target="_blank"><span class="int-name">WikiPathways</span><span class="int-desc">Community pathways with genes and metabolites</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#pathways-6" target="_blank"><span class="int-name">BioCyc <span class="int-tag">scaffold</span></span><span class="int-desc">Pathway/genome databases</span></a>
-      <a class="int-card int-card-scaffold" href="https://docs.omnibioai.org/reference-data/database-catalog/#pathways-6" target="_blank"><span class="int-name">MSigDB <span class="int-tag">scaffold</span></span><span class="int-desc">Annotated gene-set collections</span></a>
     </div>
   </div>
   <div class="int-group" data-group="cross-domain">
@@ -954,7 +953,7 @@ <h2 class="sec-title">Reference knowledge,<br>one query away</h2>
       <a class="int-card" href="https://docs.omnibioai.org/reference-data/database-catalog/#other--cross-domain-2" target="_blank"><span class="int-name">NVIDIA BioNeMo</span><span class="int-desc">Open biomolecular models and recipes</span></a>
     </div>
   </div>
-  <p class="int-note">Entries tagged <span class="int-tag">scaffold</span> are registered but not yet connected to their upstream resource; the other 107 call it in source. A few connectors report availability status only, where the upstream offers no usable API. Licensed resources (for example COSMIC, DrugBank, HGMD) need your own licence and credentials. Counts are from the docs catalog generated 2026-09-19, updated for connectors implemented since; no entry is asserted as deployed or operationally verified.</p>
+  <p class="int-note">Entries tagged <span class="int-tag">scaffold</span> are registered but not yet connected to their upstream resource; <span class="int-tag">licence required</span> marks a resource whose terms or undocumented API rule out integration until a licence is arranged. The other 126 are implemented in source; a few of them report availability status only, where the upstream offers no usable access. Licensed resources (for example COSMIC, DrugBank, OncoKB, VarSome, Mastermind, BioCyc) need your own licence and credentials. Counts reflect the Workbench plugin registry on 2026-09-26; no entry is asserted as deployed or operationally verified.</p>
 </section>
 
 <hr class="divider">
@@ -972,7 +971,7 @@ <h2 class="cat-title">What's in the platform</h2>
     <a class="cat-tile" href="https://docs.omnibioai.org/workflows-catalog/" target="_blank"><span class="cat-num">1000+</span><span class="cat-label">Workflows</span><span class="cat-detail">869 in the docs catalog, across 102 domains<span class="cat-bar" role="img" aria-label="Engine mix in the docs catalog: Nextflow 861 · WDL 5 · Snakemake 2 · CWL 1"><span class="cat-bar-seg cat-seg-0" style="flex:861" title="Nextflow: 861"></span><span class="cat-bar-seg cat-seg-1" style="flex:5" title="WDL: 5"></span><span class="cat-bar-seg cat-seg-2" style="flex:2" title="Snakemake: 2"></span><span class="cat-bar-seg cat-seg-3" style="flex:1" title="CWL: 1"></span></span><span class="cat-legend">Engine mix in docs catalog: Nextflow 861 · WDL 5 · Snakemake 2 · CWL 1</span></span></a>
     <a class="cat-tile" href="https://docs.omnibioai.org/plugins/" target="_blank"><span class="cat-num">501</span><span class="cat-label">Workbench plugins</span><span class="cat-detail">Across 22 categories, including 66 integrations</span></a>
     <a class="cat-tile" href="https://docs.omnibioai.org/tools/" target="_blank"><span class="cat-num">12,276</span><span class="cat-label">TES tool definitions</span><span class="cat-detail">8 execution backends · 9,061 auto-imported and not yet verified</span></a>
-    <a class="cat-tile" href="https://docs.omnibioai.org/reference-data/database-catalog/" target="_blank"><span class="cat-num">130</span><span class="cat-label">Reference database plugins</span><span class="cat-detail">107 implemented · 23 scaffolded</span></a>
+    <a class="cat-tile" href="https://docs.omnibioai.org/reference-data/database-catalog/" target="_blank"><span class="cat-num">129</span><span class="cat-label">Reference database plugins</span><span class="cat-detail">126 implemented · 1 licence-required · 2 scaffolded</span></a>
     <a class="cat-tile" href="https://docs.omnibioai.org/api-reference/" target="_blank"><span class="cat-num">219</span><span class="cat-label">API routes</span><span class="cat-detail">Found in source across 8 services · 109 documented publicly</span></a>
   </div>
   <p class="cat-note">Plugin, tool, reference database and API counts are read from the documentation's generated catalogs (19 Sep 2026). They describe what is registered or configured in source, not that every entry has been tested or deployed. <a href="https://docs.omnibioai.org/quality-and-trust/" target="_blank">How to read these figures ↗</a></p>