Skip to content

Glyco Warnings Upon Launching #177

Description

@jcharkow

Upon launching a pyprophet command I now get all of these glyco syntax warnings.
Everything works fine but the warnings are annoying

Singularity> pyprophet score --in tests/data/test_data.oswpq
/opt/venv/lib/python3.12/site-packages/pyprophet/glyco/report.py:463: SyntaxWarning: invalid escape sequence '\p'
  '$\pi_0$ = ' + str(np.around(pi0_['pi0'], decimals=3))
/opt/venv/lib/python3.12/site-packages/pyprophet/glyco/report.py:471: SyntaxWarning: invalid escape sequence '\p'
  '$\pi_0$ = ' + str(np.around(pi0_['pi0'], decimals=3))
/opt/venv/lib/python3.12/site-packages/pyprophet/glyco/report.py:499: SyntaxWarning: invalid escape sequence '\p'
  title = part.capitalize() + ' $\pi_0$ smoothing fit plot'
/opt/venv/lib/python3.12/site-packages/pyprophet/glyco/report.py:501: SyntaxWarning: invalid escape sequence '\p'
  ylabel = part.capitalize() + ' $\pi_0$($\lambda$)'
/opt/venv/lib/python3.12/site-packages/pyprophet/glyco/report.py:505: SyntaxWarning: invalid escape sequence '\p'
  title = '$\pi_0$ smoothing fit plot'
/opt/venv/lib/python3.12/site-packages/pyprophet/glyco/report.py:507: SyntaxWarning: invalid escape sequence '\p'
  ylabel = '$\pi_0$($\lambda$)'
/opt/venv/lib/python3.12/site-packages/pyprophet/glyco/report.py:510: SyntaxWarning: invalid escape sequence '\l'
  xlabel = '$\lambda$'
/opt/venv/lib/python3.12/site-packages/pyprophet/glyco/report.py:746: SyntaxWarning: invalid escape sequence '\p'
  'Total $\pi_0$ = ' + str(np.around(
PyProphet v3.0.5
Execution time: 2025-12-19 13:37:01
System: OS: Linux 6.8.0-90-generic | Python: 3.12.3 | CPU: 16 cores | RAM: 31.0 GB
Command: /opt/venv/bin/python /opt/venv/bin/pyprophet score --in tests/data/test_data.oswpq

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions