diff --git a/locales/_build/gettext/CHANGELOG.pot b/locales/_build/gettext/CHANGELOG.pot index 46961b07..6304f0f3 100644 --- a/locales/_build/gettext/CHANGELOG.pot +++ b/locales/_build/gettext/CHANGELOG.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -25,125 +25,142 @@ msgid "This page summarizes the main changes. To see all changes, check out the msgstr "" #: ../../../CHANGELOG.md:7 -msgid "5 February 2024" +msgid "2 July 2025" msgstr "" #: ../../../CHANGELOG.md:8 -msgid "Add initial support for translations" +#: ../../../CHANGELOG.md:18 +msgid "Dependency updates" msgstr "" #: ../../../CHANGELOG.md:9 -msgid "With huge thanks to @bethac07!" +msgid "Replace AICSImageIO with BioIO" msgstr "" -#: ../../../CHANGELOG.md:11 -msgid "4 February 2024" +#: ../../../CHANGELOG.md:10 +msgid "Fix triangle threshold line" msgstr "" -#: ../../../CHANGELOG.md:12 -msgid "Dependency updates" +#: ../../../CHANGELOG.md:11 +msgid "With thanks to Emily Shin" msgstr "" #: ../../../CHANGELOG.md:13 -msgid "matplotlib, numpy, bandas, scikit-image, scipy" +msgid "5 February 2024" +msgstr "" + +#: ../../../CHANGELOG.md:14 +msgid "Add initial support for translations" msgstr "" #: ../../../CHANGELOG.md:15 +msgid "With huge thanks to @bethac07!" +msgstr "" + +#: ../../../CHANGELOG.md:17 +msgid "4 February 2024" +msgstr "" + +#: ../../../CHANGELOG.md:19 +msgid "matplotlib, numpy, bandas, scikit-image, scipy" +msgstr "" + +#: ../../../CHANGELOG.md:21 msgid "18 November 2023" msgstr "" -#: ../../../CHANGELOG.md:16 +#: ../../../CHANGELOG.md:22 msgid "Add copyright note to each page (thanks to @haesleinhuepf)" msgstr "" -#: ../../../CHANGELOG.md:17 +#: ../../../CHANGELOG.md:23 msgid "https://github.com/bioimagebook/bioimagebook.github.io/issues/28" msgstr "" -#: ../../../CHANGELOG.md:18 +#: ../../../CHANGELOG.md:24 msgid "Rename & update 'License & Reuse' section for clarity" msgstr "" -#: ../../../CHANGELOG.md:19 +#: ../../../CHANGELOG.md:25 msgid "Fix typo (thanks to @PeteHaitch)" msgstr "" -#: ../../../CHANGELOG.md:20 +#: ../../../CHANGELOG.md:26 msgid "https://github.com/bioimagebook/bioimagebook.github.io/pull/27" msgstr "" -#: ../../../CHANGELOG.md:22 +#: ../../../CHANGELOG.md:28 msgid "3 June 2023" msgstr "" -#: ../../../CHANGELOG.md:24 +#: ../../../CHANGELOG.md:30 msgid "Switch to using `conda` and `environment.yml`" msgstr "" -#: ../../../CHANGELOG.md:25 +#: ../../../CHANGELOG.md:31 msgid "Update dependencies (and fix the various errors this caused)" msgstr "" -#: ../../../CHANGELOG.md:26 +#: ../../../CHANGELOG.md:32 msgid "Introduce aiscsimageio & use imageio.v3" msgstr "" -#: ../../../CHANGELOG.md:27 +#: ../../../CHANGELOG.md:33 msgid "Major update to the Python notebook in the 'Pixel size & dimensions' chapter" msgstr "" -#: ../../../CHANGELOG.md:29 +#: ../../../CHANGELOG.md:35 msgid "8 March 2023" msgstr "" -#: ../../../CHANGELOG.md:31 +#: ../../../CHANGELOG.md:37 msgid "Update dependencies" msgstr "" -#: ../../../CHANGELOG.md:32 +#: ../../../CHANGELOG.md:38 msgid "Dark mode support!" msgstr "" -#: ../../../CHANGELOG.md:33 +#: ../../../CHANGELOG.md:39 msgid "Possible thanks to [JupyterBook](https://jupyterbook.org/en/stable/intro.html) & especially [pydata-sphinx-theme](https://pydata-sphinx-theme.readthedocs.io/)" msgstr "" -#: ../../../CHANGELOG.md:34 +#: ../../../CHANGELOG.md:40 msgid "Minor fixes" msgstr "" -#: ../../../CHANGELOG.md:35 +#: ../../../CHANGELOG.md:41 msgid "Rename `selem` to `footprint` for median filtering with scikit-image" msgstr "" -#: ../../../CHANGELOG.md:37 +#: ../../../CHANGELOG.md:43 msgid "15 January 2023" msgstr "" -#: ../../../CHANGELOG.md:39 +#: ../../../CHANGELOG.md:45 msgid "Add this changelog" msgstr "" -#: ../../../CHANGELOG.md:40 +#: ../../../CHANGELOG.md:46 msgid "Make `index.html` the main page, not `README.html`" msgstr "" -#: ../../../CHANGELOG.md:41 +#: ../../../CHANGELOG.md:47 msgid "Please use https://bioimagebook.github.io as the main book link (*not* https://bioimagebook.github.io/README.html)!" msgstr "" -#: ../../../CHANGELOG.md:42 +#: ../../../CHANGELOG.md:48 msgid "Add `notranslate` class to button text and menu items" msgstr "" -#: ../../../CHANGELOG.md:43 +#: ../../../CHANGELOG.md:49 msgid "This aims to make Google Translate (and perhaps other translators) give more meaningful output, without mangling user interface elements." msgstr "" -#: ../../../CHANGELOG.md:46 +#: ../../../CHANGELOG.md:52 msgid "20 April 2022" msgstr "" -#: ../../../CHANGELOG.md:48 +#: ../../../CHANGELOG.md:54 msgid "First release!" msgstr "" diff --git a/locales/_build/gettext/CONTRIBUTING.pot b/locales/_build/gettext/CONTRIBUTING.pot index 45690352..b4afde56 100644 --- a/locales/_build/gettext/CONTRIBUTING.pot +++ b/locales/_build/gettext/CONTRIBUTING.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/README.pot b/locales/_build/gettext/README.pot index eda11924..02d7f835 100644 --- a/locales/_build/gettext/README.pot +++ b/locales/_build/gettext/README.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -37,7 +37,7 @@ msgid "Twitter" msgstr "" #: ../../../README.md:7 -msgid "This book tries explain the main ideas of bioimage analysis in a practical and engaging way." +msgid "This book tries to explain the main ideas of bioimage analysis in a practical and engaging way." msgstr "" #: ../../../README.md:9 diff --git a/locales/_build/gettext/chapters/0-preamble/acknowledgements/acknowledgements.pot b/locales/_build/gettext/chapters/0-preamble/acknowledgements/acknowledgements.pot index f7ec57f6..861843f9 100644 --- a/locales/_build/gettext/chapters/0-preamble/acknowledgements/acknowledgements.pot +++ b/locales/_build/gettext/chapters/0-preamble/acknowledgements/acknowledgements.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/0-preamble/disclaimer.pot b/locales/_build/gettext/chapters/0-preamble/disclaimer.pot index e035c769..32452531 100644 --- a/locales/_build/gettext/chapters/0-preamble/disclaimer.pot +++ b/locales/_build/gettext/chapters/0-preamble/disclaimer.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/0-preamble/license.pot b/locales/_build/gettext/chapters/0-preamble/license.pot index fb7f1583..97076089 100644 --- a/locales/_build/gettext/chapters/0-preamble/license.pot +++ b/locales/_build/gettext/chapters/0-preamble/license.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/0-preamble/preface/preface.pot b/locales/_build/gettext/chapters/0-preamble/preface/preface.pot index bb5dd0a5..67ccc781 100644 --- a/locales/_build/gettext/chapters/0-preamble/preface/preface.pot +++ b/locales/_build/gettext/chapters/0-preamble/preface/preface.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/0-preamble/reading/reading.pot b/locales/_build/gettext/chapters/0-preamble/reading/reading.pot index ec5a6522..0047618c 100644 --- a/locales/_build/gettext/chapters/0-preamble/reading/reading.pot +++ b/locales/_build/gettext/chapters/0-preamble/reading/reading.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/1-concepts/1-images_and_pixels/imagej.pot b/locales/_build/gettext/chapters/1-concepts/1-images_and_pixels/imagej.pot index cc1bb49c..bfcbc2d7 100644 --- a/locales/_build/gettext/chapters/1-concepts/1-images_and_pixels/imagej.pot +++ b/locales/_build/gettext/chapters/1-concepts/1-images_and_pixels/imagej.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -291,7 +291,6 @@ msgstr "" msgid "When the image is larger than the visible region, a small (purple) overview appears in the top left to indicate which part can currently be seen." msgstr "" -#: ../../../chapters/1-concepts/1-images_and_pixels/imagej.md:0 #: ../../../chapters/1-concepts/1-images_and_pixels/imagej.md:0 msgid "Practical" msgstr "" @@ -332,7 +331,6 @@ msgstr "" msgid "[![launch ImageJ.JS](https://ij.imjoy.io/assets/badge/open-in-imagej-js-badge.svg)](https://ij.imjoy.io/?open=https://github.com/bioimagebook/practical-data/blob/main/images/happy_cell.tif)" msgstr "" -#: ../../../chapters/1-concepts/1-images_and_pixels/imagej.md:0 #: ../../../chapters/1-concepts/1-images_and_pixels/imagej.md:0 msgid "Solution" msgstr "" diff --git a/locales/_build/gettext/chapters/1-concepts/1-images_and_pixels/images_and_pixels.pot b/locales/_build/gettext/chapters/1-concepts/1-images_and_pixels/images_and_pixels.pot index dce28cf4..6a85f0ef 100644 --- a/locales/_build/gettext/chapters/1-concepts/1-images_and_pixels/images_and_pixels.pot +++ b/locales/_build/gettext/chapters/1-concepts/1-images_and_pixels/images_and_pixels.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/1-concepts/1-images_and_pixels/python.pot b/locales/_build/gettext/chapters/1-concepts/1-images_and_pixels/python.pot index ed626ce2..1e897a62 100644 --- a/locales/_build/gettext/chapters/1-concepts/1-images_and_pixels/python.pot +++ b/locales/_build/gettext/chapters/1-concepts/1-images_and_pixels/python.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/1-concepts/2-measurements/imagej.pot b/locales/_build/gettext/chapters/1-concepts/2-measurements/imagej.pot index 8ea09805..4dc78542 100644 --- a/locales/_build/gettext/chapters/1-concepts/2-measurements/imagej.pot +++ b/locales/_build/gettext/chapters/1-concepts/2-measurements/imagej.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -52,10 +52,6 @@ msgstr "" msgid "We'll explore how to customize the regions being measured and exactly what measurements are made later in this section, but already it should be possible to answer the following questions." msgstr "" -#: ../../../chapters/1-concepts/2-measurements/imagej.md:0 -#: ../../../chapters/1-concepts/2-measurements/imagej.md:0 -#: ../../../chapters/1-concepts/2-measurements/imagej.md:0 -#: ../../../chapters/1-concepts/2-measurements/imagej.md:0 #: ../../../chapters/1-concepts/2-measurements/imagej.md:0 msgid "Practical" msgstr "" @@ -80,10 +76,6 @@ msgstr "" msgid "launch ImageJ.JS" msgstr "" -#: ../../../chapters/1-concepts/2-measurements/imagej.md:0 -#: ../../../chapters/1-concepts/2-measurements/imagej.md:0 -#: ../../../chapters/1-concepts/2-measurements/imagej.md:0 -#: ../../../chapters/1-concepts/2-measurements/imagej.md:0 #: ../../../chapters/1-concepts/2-measurements/imagej.md:0 msgid "Solution" msgstr "" diff --git a/locales/_build/gettext/chapters/1-concepts/2-measurements/measurements.pot b/locales/_build/gettext/chapters/1-concepts/2-measurements/measurements.pot index 64dac7e0..e6974551 100644 --- a/locales/_build/gettext/chapters/1-concepts/2-measurements/measurements.pot +++ b/locales/_build/gettext/chapters/1-concepts/2-measurements/measurements.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/1-concepts/2-measurements/python.pot b/locales/_build/gettext/chapters/1-concepts/2-measurements/python.pot index e24c9ec7..f78942f8 100644 --- a/locales/_build/gettext/chapters/1-concepts/2-measurements/python.pot +++ b/locales/_build/gettext/chapters/1-concepts/2-measurements/python.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/1-concepts/3-bit_depths/bit_depths.pot b/locales/_build/gettext/chapters/1-concepts/3-bit_depths/bit_depths.pot index fef2e362..b8f8cc2b 100644 --- a/locales/_build/gettext/chapters/1-concepts/3-bit_depths/bit_depths.pot +++ b/locales/_build/gettext/chapters/1-concepts/3-bit_depths/bit_depths.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -120,12 +120,6 @@ msgstr "" msgid "In practice, computers tend to work with groups of 8 bits, with each group of 8 bits known as a **byte**. Microscopes that acquire 8-bit images are still reasonably common, and these permit 28 = 256 different pixel values, which fall in the range 0–255. The next step up is a 16-bit image, which can contain 216 = 65536 values: a dramatic improvement (0–65535)." msgstr "" -#: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 -#: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 -#: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 -#: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 -#: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 -#: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 #: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 msgid "Question" msgstr "" @@ -138,12 +132,6 @@ msgstr "" msgid "For example, would you expect an 8-bit image to have a larger, smaller or (roughly) equivalent file size to a 16-bit image of the same scene? You can assume the two images have the same number of pixels." msgstr "" -#: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 -#: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 -#: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 -#: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 -#: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 -#: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 #: ../../../chapters/1-concepts/3-bit_depths/bit_depths.md:0 msgid "Answer" msgstr "" diff --git a/locales/_build/gettext/chapters/1-concepts/3-bit_depths/imagej.pot b/locales/_build/gettext/chapters/1-concepts/3-bit_depths/imagej.pot index b42ed628..59fa2df7 100644 --- a/locales/_build/gettext/chapters/1-concepts/3-bit_depths/imagej.pot +++ b/locales/_build/gettext/chapters/1-concepts/3-bit_depths/imagej.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -104,7 +104,6 @@ msgstr "" msgid "If you know the bit-depth and type of the image, you can figure out the range (e.g. 0-255 for an 8-bit unsigned integer image, 0-65,535 for 16-bit) and usually that gives a good indication to where the peaks would be -- but it isn't a perfect guide. Conceivably, we could have an image that was clipped at some other value because it has been rescaled *after* clipping." msgstr "" -#: ../../../chapters/1-concepts/3-bit_depths/imagej.md:0 #: ../../../chapters/1-concepts/3-bit_depths/imagej.md:0 msgid "Question" msgstr "" @@ -113,7 +112,6 @@ msgstr "" msgid "Does the image below show signs of having been clipped?" msgstr "" -#: ../../../chapters/1-concepts/3-bit_depths/imagej.md:0 #: ../../../chapters/1-concepts/3-bit_depths/imagej.md:0 msgid "Answer" msgstr "" @@ -291,7 +289,7 @@ msgid "Make sure that the {guilabel}`Scale When Converting` option is turned on msgstr "" #: ../../../chapters/1-concepts/3-bit_depths/imagej.md:245 -msgid "Can you destroy the image by simply 1) increasing the bit-depth, and the then 2) decreasing the bit-depth to its original value?" +msgid "Can you destroy the image by simply 1) increasing the bit-depth, and then 2) decreasing the bit-depth to its original value?" msgstr "" #: ../../../chapters/1-concepts/3-bit_depths/imagej.md:247 diff --git a/locales/_build/gettext/chapters/1-concepts/3-bit_depths/python.pot b/locales/_build/gettext/chapters/1-concepts/3-bit_depths/python.pot index 10c7212d..40b80396 100644 --- a/locales/_build/gettext/chapters/1-concepts/3-bit_depths/python.pot +++ b/locales/_build/gettext/chapters/1-concepts/3-bit_depths/python.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -52,13 +52,10 @@ msgstr "" msgid "dtype" msgstr "" -#: ../../../chapters/1-concepts/3-bit_depths/python.md:0 -#: ../../../chapters/1-concepts/3-bit_depths/python.md:0 #: ../../../chapters/1-concepts/3-bit_depths/python.md:0 msgid "Unsigned integer" msgstr "" -#: ../../../chapters/1-concepts/3-bit_depths/python.md:0 #: ../../../chapters/1-concepts/3-bit_depths/python.md:0 msgid "8" msgstr "" @@ -67,8 +64,6 @@ msgstr "" msgid "`uint8`" msgstr "" -#: ../../../chapters/1-concepts/3-bit_depths/python.md:0 -#: ../../../chapters/1-concepts/3-bit_depths/python.md:0 #: ../../../chapters/1-concepts/3-bit_depths/python.md:0 msgid "Signed integer" msgstr "" @@ -77,7 +72,6 @@ msgstr "" msgid "`int8`" msgstr "" -#: ../../../chapters/1-concepts/3-bit_depths/python.md:0 #: ../../../chapters/1-concepts/3-bit_depths/python.md:0 msgid "16" msgstr "" @@ -90,8 +84,6 @@ msgstr "" msgid "`int16`" msgstr "" -#: ../../../chapters/1-concepts/3-bit_depths/python.md:0 -#: ../../../chapters/1-concepts/3-bit_depths/python.md:0 #: ../../../chapters/1-concepts/3-bit_depths/python.md:0 msgid "32" msgstr "" @@ -104,7 +96,6 @@ msgstr "" msgid "`int32`" msgstr "" -#: ../../../chapters/1-concepts/3-bit_depths/python.md:0 #: ../../../chapters/1-concepts/3-bit_depths/python.md:0 msgid "Floating point" msgstr "" diff --git a/locales/_build/gettext/chapters/1-concepts/4-colors/colors.pot b/locales/_build/gettext/chapters/1-concepts/4-colors/colors.pot index b2421359..f92d5b1f 100644 --- a/locales/_build/gettext/chapters/1-concepts/4-colors/colors.pot +++ b/locales/_build/gettext/chapters/1-concepts/4-colors/colors.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -177,7 +177,7 @@ msgid "One of the biggest reasons to use RGB images in science is for presentati msgstr "" #: ../../../chapters/1-concepts/4-colors/colors.md:333 -msgid "If want want an image to dispay exactly the same in ImageJ as in a PowerPoint® presentation or a figure in a publication, for example, we'll probably want to convert it to RGB. If we don't, the image might display very strangely on other software -- or even not open at all." +msgid "If you want an image to display exactly the same way in ImageJ as in a PowerPoint® presentation or a figure in a publication, for example, we'll probably want to convert it to RGB. If we don't, the image might display very strangely on other software -- or even not open at all." msgstr "" #: ../../../chapters/1-concepts/4-colors/colors.md:336 diff --git a/locales/_build/gettext/chapters/1-concepts/4-colors/imagej.pot b/locales/_build/gettext/chapters/1-concepts/4-colors/imagej.pot index aca8d468..ffa5745a 100644 --- a/locales/_build/gettext/chapters/1-concepts/4-colors/imagej.pot +++ b/locales/_build/gettext/chapters/1-concepts/4-colors/imagej.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -104,8 +104,6 @@ msgstr "" msgid "When it comes to measuring an RGB image, the enigmatic statement above that ImageJ 'converts the image' is explained (in more detail than you might want) [at the end](sec_colors_converts)." msgstr "" -#: ../../../chapters/1-concepts/4-colors/imagej.md:0 -#: ../../../chapters/1-concepts/4-colors/imagej.md:0 #: ../../../chapters/1-concepts/4-colors/imagej.md:0 msgid "Practical" msgstr "" @@ -132,7 +130,6 @@ msgstr "" msgid "launch ImageJ.JS" msgstr "" -#: ../../../chapters/1-concepts/4-colors/imagej.md:0 #: ../../../chapters/1-concepts/4-colors/imagej.md:0 msgid "Solution" msgstr "" diff --git a/locales/_build/gettext/chapters/1-concepts/4-colors/python.pot b/locales/_build/gettext/chapters/1-concepts/4-colors/python.pot index d0bd93c9..8ad99fdd 100644 --- a/locales/_build/gettext/chapters/1-concepts/4-colors/python.pot +++ b/locales/_build/gettext/chapters/1-concepts/4-colors/python.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/1-concepts/5-pixel_size/imagej.pot b/locales/_build/gettext/chapters/1-concepts/5-pixel_size/imagej.pot index 4765c798..f976ee86 100644 --- a/locales/_build/gettext/chapters/1-concepts/5-pixel_size/imagej.pot +++ b/locales/_build/gettext/chapters/1-concepts/5-pixel_size/imagej.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -60,7 +60,6 @@ msgstr "" msgid "The pixel width and height are *usually* the same. The voxel depth (where relevant) is often different." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/imagej.md:0 #: ../../../chapters/1-concepts/5-pixel_size/imagej.md:0 msgid "Question" msgstr "" @@ -77,7 +76,6 @@ msgstr "" msgid "**Tip:** The answer should already be visible in {numref}`fig-properties_confocal` and {numref}`fig-properties_fluorescent`." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/imagej.md:0 #: ../../../chapters/1-concepts/5-pixel_size/imagej.md:0 msgid "Answer" msgstr "" @@ -234,8 +232,6 @@ msgstr "" msgid "It's also possible to change the dimensions through {menuselection}`Image --> Properties...`, but I find that can sometimes be unreliable because of the old stack/hyperstack distinction (i.e. it doesn't convert a stack to a hyperstack, and therefore doesn't display all the sliders that are needed). A better option is to use {menuselection}`Image --> Hyperstack --> Stack to Hyperstack...` to fix dimensions." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/imagej.md:0 -#: ../../../chapters/1-concepts/5-pixel_size/imagej.md:0 #: ../../../chapters/1-concepts/5-pixel_size/imagej.md:0 msgid "Practical" msgstr "" @@ -258,8 +254,6 @@ msgstr "" msgid "launch ImageJ.JS" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/imagej.md:0 -#: ../../../chapters/1-concepts/5-pixel_size/imagej.md:0 #: ../../../chapters/1-concepts/5-pixel_size/imagej.md:0 msgid "Solution" msgstr "" diff --git a/locales/_build/gettext/chapters/1-concepts/5-pixel_size/pixel_size.pot b/locales/_build/gettext/chapters/1-concepts/5-pixel_size/pixel_size.pot index 28d3700c..89677ccd 100644 --- a/locales/_build/gettext/chapters/1-concepts/5-pixel_size/pixel_size.pot +++ b/locales/_build/gettext/chapters/1-concepts/5-pixel_size/pixel_size.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -112,7 +112,6 @@ msgstr "" msgid "This conversion is often done within the analysis software, but depends upon the pixel size information being present and correct. All being well, appropriate pixel sizes will have been written into an image file during acquisition and subsequently read by the software. Unfortunately, this does not always work out (see {ref}`chap_files`) and so we do always need to check our pixel sizes, and derived measurements of size, for reasonableness." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/pixel_size.md:0 #: ../../../chapters/1-concepts/5-pixel_size/pixel_size.md:0 msgid "Question" msgstr "" @@ -125,7 +124,6 @@ msgstr "" msgid "What is the **area** of the structure in µm2?" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/pixel_size.md:0 #: ../../../chapters/1-concepts/5-pixel_size/pixel_size.md:0 msgid "Answer" msgstr "" diff --git a/locales/_build/gettext/chapters/1-concepts/5-pixel_size/python.pot b/locales/_build/gettext/chapters/1-concepts/5-pixel_size/python.pot index 1cb36fc4..ac5331e2 100644 --- a/locales/_build/gettext/chapters/1-concepts/5-pixel_size/python.pot +++ b/locales/_build/gettext/chapters/1-concepts/5-pixel_size/python.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -45,7 +45,7 @@ msgid "[`imageio`](https://pypi.org/project/imageio/) - which very commonly used msgstr "" #: ../../../chapters/1-concepts/5-pixel_size/python.md:37 -msgid "[`AICSImageIO`](https://pypi.org/project/aicsimageio/3.2.1/) - which is a bit more complex, but has some *extremely* useful features for working with scientific images" +msgid "[`bioio`](https://bioio-devs.github.io/bioio) - which is a bit more complex, but has some *extremely* useful features for working with scientific images" msgstr "" #: ../../../chapters/1-concepts/5-pixel_size/python.md:41 @@ -60,234 +60,234 @@ msgstr "" msgid "The following code shows how we can read both the pixel values and the metadata." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:64 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:62 msgid "The metadata contains a lot of info, even including lookup tables." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:66 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:64 msgid "Printing it a little more nicely (and skipping the LUTs), we get:" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:74 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:72 msgid "This metadata is actually quite ImageJ-specific, and other TIFFs may give quite different metadata." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:76 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:74 msgid "We can see the version of ImageJ that wrote the file, but picking out the key thing we want here - the pixel size - is not so easy." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:78 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:76 msgid "Seeing `unit=um` is encouraging, but not enough." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:80 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:78 msgid "We can explore a bit more with 'properties', which imageio described as ['a curated set of standardized metadata'](https://imageio.readthedocs.io/en/v2.30.0/reference/userapi.html#metadata)." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:87 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:85 msgid "Here, the `spacing=(6.25, 6.25)` seems promising." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:89 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:87 msgid "It's tempting to suppose that means the pixel width and height are both 6.25 µm - *however* if I check the same image in ImageJ itself, I see the pixel width and height are actually 0.16 µm... which happens to equal 1.0/6.25 µm." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:95 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:93 msgid "Therefore the information **is** in the metadata, but it's very easy to misinterpret - and it isn't even guaranteed to be correct if the image was written by some other software." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:97 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:95 msgid "So while `imageio` is excellent for reading images easily - generally just a quick `im = imread(path)` - it's not necessarily the best thing to use when pixel sizes (or other metadata) matter." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:101 -msgid "Using AICSImageIO" +#: ../../../chapters/1-concepts/5-pixel_size/python.md:99 +msgid "Using BioIO" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:103 -msgid "The best alternative I know for working with scientific (especially biomedical) images is [**AICSImageIO**](https://github.com/AllenCellModeling/aicsimageio). This is a really useful Python library that standardizes reading and writing multiple file formats - and, depending upon how it's installed, can even access lots more awkward proprietary file formats with the help of [Bio-Formats](http://www.openmicroscopy.org/bio-formats/)." +#: ../../../chapters/1-concepts/5-pixel_size/python.md:101 +msgid "The best alternative I know for working with scientific (especially biomedical) images is [**BioIO**](https://bioio-devs.github.io/bioio) (the successor to [AICSImageIO](https://github.com/AllenCellModeling/aicsimageio)). This is a really useful Python library that standardizes reading and writing multiple file formats - and, depending upon how it's installed, can even access lots more awkward proprietary file formats with the help of [Bio-Formats](http://www.openmicroscopy.org/bio-formats/)." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:106 -msgid "Although it's possible to use a version of `imread` with AICSImageIO, it's worth learning the alternative way of doing things by creating an `AICSImage` object. This provides us with a way to access pixels and lots of other useful things whenever we need them." +#: ../../../chapters/1-concepts/5-pixel_size/python.md:104 +msgid "Although it's possible to use a version of `imread` with BioIO, it's worth learning the alternative way of doing things by creating an `BioImage` object. This provides us with a way to access pixels and lots of other useful things whenever we need them." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:122 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:120 msgid "From this, we can immediately see the attribute that will provide us with pixel sizes directly." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:128 -msgid "One perhaps non-obvious thing to know when using AICSImageIO is that the `AICSImage` isn't a regular NumPy array of the kind that `imageio.imread` would return. Rather, if you want that, you need to request the data." +#: ../../../chapters/1-concepts/5-pixel_size/python.md:126 +msgid "One perhaps non-obvious thing to know when using BioIO is that the `BioImage` isn't a regular NumPy array of the kind that `imageio.imread` would return. Rather, if you want that, you need to request the data." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:131 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:129 msgid "Using this knowledge, we can check that we have the same mean pixel value for both - as a quick way to ascertain that the actual pixel values are likely to match." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:138 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:136 msgid "Dimensions" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:140 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:138 msgid "Array shapes and dimensions" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:142 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:140 msgid "We've seen how two different libraries can enable us to read the same pixel values as NumPy arrays and extract pixel size information." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:144 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:142 msgid "We might well expect that the NumPy arrays representing the pixel values are the same, but in fact we can't count on that." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:146 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:144 msgid "NumPy is incredibly flexible when it comes to handling multidimensional arrays. And while that flexibility can be really helpful, it can also complicate things." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:149 -msgid "To see it in action, let's check the dimensions of the images we read using imageio and AICSImageIO." +#: ../../../chapters/1-concepts/5-pixel_size/python.md:147 +msgid "To see it in action, let's check the dimensions of the images we read using imageio and BioIO." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:166 -msgid "We can see the number of pixels are the same, but there are some extra 'singleton' dimensions stuck into the results from AICSImageIO (i.e. with length `1`)." +#: ../../../chapters/1-concepts/5-pixel_size/python.md:164 +msgid "We can see the number of pixels are the same, but there are some extra 'singleton' dimensions stuck into the results from BioIO (i.e. with length `1`)." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:168 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:166 msgid "Fortunately, we can easily remove them with an `np.squeeze` - and end up with the same arrays." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:177 -msgid "So a natural question is: **why has AICSImageIO snuck in some extra dimensions?**" +#: ../../../chapters/1-concepts/5-pixel_size/python.md:175 +msgid "So a natural question is: **why has BioIO snuck in some extra dimensions?**" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:179 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:177 msgid "Before answering that, we should ask ourselves something else. **What exactly do we _have_ along the dimension of length `5`?**" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:182 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:180 msgid "And this is where things aren't terribly clear with imageio." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:184 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:182 msgid "`5` *could* be the width of the image, height of the image, number of channels, number of z-slices, or number of timepoints." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:186 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:184 msgid "Based upon our knowledge of images and the other dimensions, we'd be justified in expecting that the `5` doesn't correspond to the image width or height - `512` seems more likely for those - so it's probably one of the others." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:188 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:186 msgid "But the problem is that **we have no way of knowing** without further information. If we don't have some external source to tell us, we need to poke around the metadata or look at the contents to figure out the answer." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:201 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:199 msgid "To me, that looks very much like we have 5 different channels. I'm making some assumptions there... but they seem pretty safe assumptions." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:204 -msgid "However AICSImageIO removes this ambiguity in a couple of ways." +#: ../../../chapters/1-concepts/5-pixel_size/python.md:202 +msgid "However BioIO removes this ambiguity in a couple of ways." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:205 -msgid "You can expect `AICSImage` to return a 5D array, with the dimensions in a consistent order: `TCZYX` (although there is at least one caveat in the next section!)" +#: ../../../chapters/1-concepts/5-pixel_size/python.md:203 +msgid "You can expect `BioIO` to return a 5D array, with the dimensions in a consistent order: `TCZYX` (although there is at least one caveat in the next section!)" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:206 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:204 msgid "You can easily query the dimensions and order to be sure" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:215 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:213 msgid "Where are my channels?!?" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:217 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:215 msgid "We've seen above that imageio can return a 5-channel image with the channels first. Our question here is: does it always do that?" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:220 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:218 msgid "The answer, alas, is no. The location of the channels dimensions is painfully uncertain in Python, and often different tools expect it to be in different places." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:223 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:221 msgid "Or sometimes the *same* tool might put it in a different place." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:225 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:223 msgid "To see that in action, let's read a simple RGB image with imageio." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:233 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:231 msgid "An RGB image has 3 channels - red, green and blue - but it seems that suddenly we have the channels dimension last." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:235 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:233 msgid "Why?" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:237 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:235 msgid "I don't have a very satisfying explanation, except to say that for RGB that's often what you want because matplotlib expects the channels to be last, and we often use matplotlib to show images." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:249 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:247 msgid "It's not *always* what you want though, and if you get enough deep learning then you'll find the 'channels-first' or 'channels-last' question coming up often." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:251 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:249 msgid "With that in mind, we can use NumPy to shift from so-called 'channels-last' to 'channels-first' - but matplotlib won't like that very much." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:266 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:264 msgid "So imageio might get channels at the start or the end. For RGB, it seems to prefer the end." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:269 -msgid "What does AICSImageIO do?" +#: ../../../chapters/1-concepts/5-pixel_size/python.md:267 +msgid "What does BioIO do?" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:271 -msgid "Since I said AICSImageIO is consistent, I'd like to say it puts the channels in the same place for the RGB and 5-channel image... but no. It also treats RGB as a special case." +#: ../../../chapters/1-concepts/5-pixel_size/python.md:269 +msgid "Since I said BioIO is consistent, I'd like to say it puts the channels in the same place for the RGB and 5-channel image... but no. It also treats RGB as a special case." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:281 -msgid "It's a little hard to find, but the AICSImageIO documentation mentions that [you can expect 5 dimensions for non-RGB images, but RGB images have 6 dimensions](https://allencellmodeling.github.io/aicsimageio/aicsimageio.readers.html#aicsimageio.readers.bioformats_reader.BioFile.to_numpy) - where the sixth is called `S` for `Samples`." +#: ../../../chapters/1-concepts/5-pixel_size/python.md:279 +msgid "It's a little hard to find, but the BioIO documentation mentions that [you can expect 5 dimensions for non-RGB images, but RGB images have 6 dimensions](https://bioio-devs.github.io/bioio/bioio.html#bioio.bio_image.BioImage.get_image_data) - where the sixth is called `S` for `Samples`." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:283 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:281 msgid "The good thing is that, assuming you don't have anything else going on with the first 3 dimensions - i.e. they are just `(1, 1, 1)` - a simple `np.squeeze` is enough to convert the pixel array into a matplotlib-friendly channels-last RGB format." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:287 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:285 msgid "More dimensions" msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:289 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:287 msgid "We'll end this section by looking at an image with 2 channels and 25 z-slices." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:291 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:289 msgid "Since you now know how to explore the dimensions in detail, I'll use my `load_image` helper function for convenience... which returns a NumPy array that's pre-squeezed to remove any singleton dimensions." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:298 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:296 msgid "Since we already considered how to view multichannel images in the last chapter, let's extract a single channel here." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:307 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:305 msgid "At this point, NumPy becomes quite fun - because it is *so easy* to do stuff along different dimensions." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:309 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:307 msgid "For example, we can rapidly generate different z-projections." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:337 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:335 msgid "But we're not limited to projecting along z - we can just switch the `axis` value and project along some other dimension." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:339 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:337 msgid "Note that this won't do any correction for differences in pixel size in xy vs. z. With only 25 z-slices, these projections look extremely squashed." msgstr "" -#: ../../../chapters/1-concepts/5-pixel_size/python.md:367 +#: ../../../chapters/1-concepts/5-pixel_size/python.md:365 msgid "And we can also slice wherever we like as well, to obtain orthogonal views." msgstr "" diff --git a/locales/_build/gettext/chapters/1-concepts/6-files/files.pot b/locales/_build/gettext/chapters/1-concepts/6-files/files.pot index 47d816d5..83414978 100644 --- a/locales/_build/gettext/chapters/1-concepts/6-files/files.pot +++ b/locales/_build/gettext/chapters/1-concepts/6-files/files.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -334,7 +334,6 @@ msgstr "" msgid "TIFF images are particularly tricky. A TIFF image could contain uncompressed data, or data compressed using a variety of different methods -- both lossless and lossy, including JPEG. To determine if a TIFF image has used lossy compression, more detective work may be needed (e.g. zooming in and hunting for artefacts, comparing pixel statistics with the original data file, or using software to check for metadata)." msgstr "" -#: ../../../chapters/1-concepts/6-files/files.md:0 #: ../../../chapters/1-concepts/6-files/files.md:0 msgid "Question" msgstr "" @@ -351,7 +350,6 @@ msgstr "" msgid "*You can ignore the tiny bit of extra space needed to store any associated metadata.*" msgstr "" -#: ../../../chapters/1-concepts/6-files/files.md:0 #: ../../../chapters/1-concepts/6-files/files.md:0 msgid "Answer" msgstr "" diff --git a/locales/_build/gettext/chapters/1-concepts/6-files/imagej.pot b/locales/_build/gettext/chapters/1-concepts/6-files/imagej.pot index ac37b36d..d51b5ce8 100644 --- a/locales/_build/gettext/chapters/1-concepts/6-files/imagej.pot +++ b/locales/_build/gettext/chapters/1-concepts/6-files/imagej.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/1-concepts/6-files/python.pot b/locales/_build/gettext/chapters/1-concepts/6-files/python.pot index a1d03d3e..80ccf9c5 100644 --- a/locales/_build/gettext/chapters/1-concepts/6-files/python.pot +++ b/locales/_build/gettext/chapters/1-concepts/6-files/python.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -77,11 +77,11 @@ msgid "[tifffile](https://pypi.org/project/tifffile/) is a small package[^fn_tf] msgstr "" #: ../../../chapters/1-concepts/6-files/python.md:100 -msgid "AICSImageIO" +msgid "BioIO" msgstr "" #: ../../../chapters/1-concepts/6-files/python.md:102 -msgid "[AICSImageIO](https://github.com/AllenCellModeling/aicsimageio) is an excellent package for reading lots of image formats in Python - and is particularly strong when it comes to reading multidimensional images and metadata." +msgid "[BioIO](https://bioio-devs.github.io/bioio/) is an excellent package for reading lots of image formats in Python - and is particularly strong when it comes to reading multidimensional images and metadata." msgstr "" #: ../../../chapters/1-concepts/6-files/python.md:104 @@ -121,7 +121,7 @@ msgid "Finally, [Napari](https://napari.org) isn't an image reading library eith msgstr "" #: ../../../chapters/1-concepts/6-files/python.md:129 -msgid "Napari can bring everything together - working with dask arrays and reading images with plugins, such as [napari-aicsimageio](https://github.com/AllenCellModeling/napari-aicsimageio) and [napari-lazy-openslide](https://github.com/manzt/napari-lazy-openslide)." +msgid "Napari can bring everything together - working with dask arrays and reading images with plugins, such as [napari-lazy-openslide](https://github.com/manzt/napari-lazy-openslide)." msgstr "" #: ../../../chapters/1-concepts/6-files/python.md:90 diff --git a/locales/_build/gettext/chapters/2-processing/1-processing_and_analysis/processing_and_analysis.pot b/locales/_build/gettext/chapters/2-processing/1-processing_and_analysis/processing_and_analysis.pot index 9457fe20..127b1323 100644 --- a/locales/_build/gettext/chapters/2-processing/1-processing_and_analysis/processing_and_analysis.pot +++ b/locales/_build/gettext/chapters/2-processing/1-processing_and_analysis/processing_and_analysis.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/2-processing/2-point_operations/imagej.pot b/locales/_build/gettext/chapters/2-processing/2-point_operations/imagej.pot index b551b5f6..85823f10 100644 --- a/locales/_build/gettext/chapters/2-processing/2-point_operations/imagej.pot +++ b/locales/_build/gettext/chapters/2-processing/2-point_operations/imagej.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -100,9 +100,6 @@ msgstr "" msgid "Many point operations for single images are found in the {menuselection}`Process --> Math -->` submenu. At the top of the list come the arithmetic operations: {menuselection}`Add...`, {menuselection}`Subtract...`, {menuselection}`Multiply...` and {menuselection}`Divide...`." msgstr "" -#: ../../../chapters/2-processing/2-point_operations/imagej.md:0 -#: ../../../chapters/2-processing/2-point_operations/imagej.md:0 -#: ../../../chapters/2-processing/2-point_operations/imagej.md:0 #: ../../../chapters/2-processing/2-point_operations/imagej.md:0 msgid "Practical" msgstr "" @@ -140,8 +137,6 @@ msgstr "" msgid "launch ImageJ.JS" msgstr "" -#: ../../../chapters/2-processing/2-point_operations/imagej.md:0 -#: ../../../chapters/2-processing/2-point_operations/imagej.md:0 #: ../../../chapters/2-processing/2-point_operations/imagej.md:0 msgid "Solution" msgstr "" @@ -272,7 +267,7 @@ msgid "The Image Calculator" msgstr "" #: ../../../chapters/2-processing/2-point_operations/imagej.md:225 -msgid "{menuselection}`Process --> Math --> Image Calculator...` is used to combine two images in various ways. It is one of ImageJ's most indispensable commands." +msgid "{menuselection}`Process --> Image Calculator...` is used to combine two images in various ways. It is one of ImageJ's most indispensable commands." msgstr "" #: ../../../chapters/2-processing/2-point_operations/imagej.md:231 @@ -284,7 +279,7 @@ msgid "But beware of the bit-depth and type! If any of the original images are 8 msgstr "" #: ../../../chapters/2-processing/2-point_operations/imagej.md:243 -msgid "{menuselection}`Process --> Math --> Image Calculator...` finally makes it possible for us to check whether the pixel values of two images are all identical -- without relying on summary measurements or histograms." +msgid "{menuselection}`Process --> Image Calculator...` finally makes it possible for us to check whether the pixel values of two images are all identical -- without relying on summary measurements or histograms." msgstr "" #: ../../../chapters/2-processing/2-point_operations/imagej.md:245 diff --git a/locales/_build/gettext/chapters/2-processing/2-point_operations/point_operations.pot b/locales/_build/gettext/chapters/2-processing/2-point_operations/point_operations.pot index 0b78bb2a..0cebbf7f 100644 --- a/locales/_build/gettext/chapters/2-processing/2-point_operations/point_operations.pot +++ b/locales/_build/gettext/chapters/2-processing/2-point_operations/point_operations.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -120,7 +120,6 @@ msgstr "" msgid "**However**, we need to keep in mind that we're not dealing with abtract maths but rather bits and bytes. Which makes the next question particularly important." msgstr "" -#: ../../../chapters/2-processing/2-point_operations/point_operations.md:0 #: ../../../chapters/2-processing/2-point_operations/point_operations.md:0 msgid "Question" msgstr "" @@ -129,7 +128,6 @@ msgstr "" msgid "Suppose you add a constant to every pixel in the image. Why might subtracting the same constant from the result not give you back the image you started with?" msgstr "" -#: ../../../chapters/2-processing/2-point_operations/point_operations.md:0 #: ../../../chapters/2-processing/2-point_operations/point_operations.md:0 msgid "Answer" msgstr "" diff --git a/locales/_build/gettext/chapters/2-processing/3-thresholding/imagej.pot b/locales/_build/gettext/chapters/2-processing/3-thresholding/imagej.pot index 6a893c0a..45d2fe74 100644 --- a/locales/_build/gettext/chapters/2-processing/3-thresholding/imagej.pot +++ b/locales/_build/gettext/chapters/2-processing/3-thresholding/imagej.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -180,10 +180,6 @@ msgstr "" msgid "Creating a labeled image with {menuselection}`Analyze --> Analyze Particles`." msgstr "" -#: ../../../chapters/2-processing/3-thresholding/imagej.md:0 -#: ../../../chapters/2-processing/3-thresholding/imagej.md:0 -#: ../../../chapters/2-processing/3-thresholding/imagej.md:0 -#: ../../../chapters/2-processing/3-thresholding/imagej.md:0 #: ../../../chapters/2-processing/3-thresholding/imagej.md:0 msgid "Practical" msgstr "" @@ -221,9 +217,6 @@ msgstr "" msgid "launch ImageJ.JS" msgstr "" -#: ../../../chapters/2-processing/3-thresholding/imagej.md:0 -#: ../../../chapters/2-processing/3-thresholding/imagej.md:0 -#: ../../../chapters/2-processing/3-thresholding/imagej.md:0 #: ../../../chapters/2-processing/3-thresholding/imagej.md:0 msgid "Solution" msgstr "" diff --git a/locales/_build/gettext/chapters/2-processing/3-thresholding/thresholding.pot b/locales/_build/gettext/chapters/2-processing/3-thresholding/thresholding.pot index 98ad8e10..b32e2d16 100644 --- a/locales/_build/gettext/chapters/2-processing/3-thresholding/thresholding.pot +++ b/locales/_build/gettext/chapters/2-processing/3-thresholding/thresholding.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -533,7 +533,7 @@ msgid "The top half of {numref}`fig-thresholds_noisy` reproduces the nuclei from msgstr "" #: ../../../chapters/2-processing/3-thresholding/thresholding.md:1010 -msgid "*However,* if we apply a Gaussian filter to smooth the image, a lot of the the random noise is reduced (see {ref}`chap_filters`). This results in a histogram dramatically more similar to that in the original, (almost) noise-free image, and the threshold is again quite successful (F)." +msgid "*However,* if we apply a Gaussian filter to smooth the image, a lot of the random noise is reduced (see {ref}`chap_filters`). This results in a histogram dramatically more similar to that in the original, (almost) noise-free image, and the threshold is again quite successful (F)." msgstr "" #: ../../../chapters/2-processing/3-thresholding/thresholding.md:1057 diff --git a/locales/_build/gettext/chapters/2-processing/4-filters/filters.pot b/locales/_build/gettext/chapters/2-processing/4-filters/filters.pot index 16b556ca..e0c3fb03 100644 --- a/locales/_build/gettext/chapters/2-processing/4-filters/filters.pot +++ b/locales/_build/gettext/chapters/2-processing/4-filters/filters.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -160,8 +160,6 @@ msgstr "" msgid "Smoothing an image using circular mean filters with different radii." msgstr "" -#: ../../../chapters/2-processing/4-filters/filters.md:0 -#: ../../../chapters/2-processing/4-filters/filters.md:0 #: ../../../chapters/2-processing/4-filters/filters.md:0 msgid "Question" msgstr "" @@ -174,7 +172,6 @@ msgstr "" msgid "Can you think of any advantages in using the circular filter rather than the square filter?" msgstr "" -#: ../../../chapters/2-processing/4-filters/filters.md:0 #: ../../../chapters/2-processing/4-filters/filters.md:0 msgid "Answer" msgstr "" diff --git a/locales/_build/gettext/chapters/2-processing/4-filters/imagej.pot b/locales/_build/gettext/chapters/2-processing/4-filters/imagej.pot index f0ddc765..3ae47e5e 100644 --- a/locales/_build/gettext/chapters/2-processing/4-filters/imagej.pot +++ b/locales/_build/gettext/chapters/2-processing/4-filters/imagej.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -76,7 +76,6 @@ msgstr "" msgid "{menuselection}`Process --> Filters --> Convolve...` makes it possible to define any custom linear filter by entering the values of the desired coefficients, separated by spaces and arranged in rows and columns. If you {guilabel}`Normalize Kernel` is selected, then the coefficients are scaled so that they add to 1, by dividing by the sum of all the coefficients -- unless the sum is 0, in which case requesting normalizion does nothing." msgstr "" -#: ../../../chapters/2-processing/4-filters/imagej.md:0 #: ../../../chapters/2-processing/4-filters/imagej.md:0 msgid "Question" msgstr "" @@ -85,7 +84,6 @@ msgstr "" msgid "When defining an _n_×_n_ filter kernel with {menuselection}`Convolve...`, ImageJ insists that __n__ is an odd number. Why?" msgstr "" -#: ../../../chapters/2-processing/4-filters/imagej.md:0 #: ../../../chapters/2-processing/4-filters/imagej.md:0 msgid "Answer" msgstr "" @@ -126,8 +124,6 @@ msgstr "" msgid "_You have an 8-bit image ({guilabel}`Normalize Kernel` unchecked)_: The pixel values would become negative, but then cannot be stored in an 8-bit unsigned integer form. Therefore, all pixels simply become clipped to zero." msgstr "" -#: ../../../chapters/2-processing/4-filters/imagej.md:0 -#: ../../../chapters/2-processing/4-filters/imagej.md:0 #: ../../../chapters/2-processing/4-filters/imagej.md:0 msgid "Practical" msgstr "" @@ -152,8 +148,6 @@ msgstr "" msgid "launch ImageJ.JS" msgstr "" -#: ../../../chapters/2-processing/4-filters/imagej.md:0 -#: ../../../chapters/2-processing/4-filters/imagej.md:0 #: ../../../chapters/2-processing/4-filters/imagej.md:0 msgid "Solution" msgstr "" diff --git a/locales/_build/gettext/chapters/2-processing/5-morph/imagej.pot b/locales/_build/gettext/chapters/2-processing/5-morph/imagej.pot index 8ff81874..e143dc08 100644 --- a/locales/_build/gettext/chapters/2-processing/5-morph/imagej.pot +++ b/locales/_build/gettext/chapters/2-processing/5-morph/imagej.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/2-processing/5-morph/morph.pot b/locales/_build/gettext/chapters/2-processing/5-morph/morph.pot index 3f219acc..16e8eaef 100644 --- a/locales/_build/gettext/chapters/2-processing/5-morph/morph.pot +++ b/locales/_build/gettext/chapters/2-processing/5-morph/morph.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/2-processing/6-transforms/imagej.pot b/locales/_build/gettext/chapters/2-processing/6-transforms/imagej.pot index fc3b5e28..1ae2c0f2 100644 --- a/locales/_build/gettext/chapters/2-processing/6-transforms/imagej.pot +++ b/locales/_build/gettext/chapters/2-processing/6-transforms/imagej.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/2-processing/6-transforms/transforms.pot b/locales/_build/gettext/chapters/2-processing/6-transforms/transforms.pot index 539dde7b..b8805054 100644 --- a/locales/_build/gettext/chapters/2-processing/6-transforms/transforms.pot +++ b/locales/_build/gettext/chapters/2-processing/6-transforms/transforms.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/2-processing/7-multidimensional_processing/imagej.pot b/locales/_build/gettext/chapters/2-processing/7-multidimensional_processing/imagej.pot index 390a9631..3c2deee6 100644 --- a/locales/_build/gettext/chapters/2-processing/7-multidimensional_processing/imagej.pot +++ b/locales/_build/gettext/chapters/2-processing/7-multidimensional_processing/imagej.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -48,8 +48,6 @@ msgstr "" msgid "Setting the LUT of a 3D image requires particular care. The normal {menuselection}`Brightness/Contrast...` tool only takes the currently-displayed slice into consideration when pressing {guilabel}`Reset` or {guilabel}`Auto`. Optimizing the display for a single slice does not necessarily mean the rest of the stack will look reasonable if the brightness changes much. {menuselection}`Process --> Enhance Contrast...` is a better choice, since here you can specify that the information in the entire stack should be used. You can also specify the percentage of pixels that should be saturated (clipped) _for display_, i.e. those that should be shown with the first or last colors in the LUT. So long as {guilabel}`Normalize` and {guilabel}`Equalize histogram` are not selected, the pixel values shouldn't be changed." msgstr "" -#: ../../../chapters/2-processing/7-multidimensional_processing/imagej.md:0 -#: ../../../chapters/2-processing/7-multidimensional_processing/imagej.md:0 #: ../../../chapters/2-processing/7-multidimensional_processing/imagej.md:0 msgid "Question" msgstr "" @@ -58,8 +56,6 @@ msgstr "" msgid "By default, the percentage of saturated pixels in {menuselection}`Enhance Contrast...` is set to 0.4. Why might this be chosen instead of 0?" msgstr "" -#: ../../../chapters/2-processing/7-multidimensional_processing/imagej.md:0 -#: ../../../chapters/2-processing/7-multidimensional_processing/imagej.md:0 #: ../../../chapters/2-processing/7-multidimensional_processing/imagej.md:0 msgid "Answer" msgstr "" diff --git a/locales/_build/gettext/chapters/2-processing/7-multidimensional_processing/multidimensional_processing.pot b/locales/_build/gettext/chapters/2-processing/7-multidimensional_processing/multidimensional_processing.pot index c256a710..22a73432 100644 --- a/locales/_build/gettext/chapters/2-processing/7-multidimensional_processing/multidimensional_processing.pot +++ b/locales/_build/gettext/chapters/2-processing/7-multidimensional_processing/multidimensional_processing.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -213,7 +213,7 @@ msgid "The distance and watershed transforms extend readily to 3D, but require a msgstr "" #: ../../../chapters/2-processing/7-multidimensional_processing/multidimensional_processing.md:422 -msgid "One thing to look out for, especially with the distance transform, is whether pixel anisotropy is taken into consideration. If not, the the distance transform will not be capable of properly identifying the 'nearest' foreground or background pixel in calibrated units, but rather only in pixel units." +msgid "One thing to look out for, especially with the distance transform, is whether pixel anisotropy is taken into consideration. If not, then the distance transform will not be capable of properly identifying the 'nearest' foreground or background pixel in calibrated units, but rather only in pixel units." msgstr "" #: ../../../chapters/2-processing/7-multidimensional_processing/multidimensional_processing.md:425 diff --git a/locales/_build/gettext/chapters/3-fluorescence/1-formation_overview/formation_overview.pot b/locales/_build/gettext/chapters/3-fluorescence/1-formation_overview/formation_overview.pot index d00f6b1c..111f37e1 100644 --- a/locales/_build/gettext/chapters/3-fluorescence/1-formation_overview/formation_overview.pot +++ b/locales/_build/gettext/chapters/3-fluorescence/1-formation_overview/formation_overview.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/3-fluorescence/2-formation_spatial/formation_spatial.pot b/locales/_build/gettext/chapters/3-fluorescence/2-formation_spatial/formation_spatial.pot index b2bc6251..418a5198 100644 --- a/locales/_build/gettext/chapters/3-fluorescence/2-formation_spatial/formation_spatial.pot +++ b/locales/_build/gettext/chapters/3-fluorescence/2-formation_spatial/formation_spatial.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -148,10 +148,6 @@ msgstr "" msgid "Simplified diagram to help visualize how a light-emitting point would be imaged using a widefield microscope. Some of the light originating from the point is captured by a lens. If you imagine the light then being directed towards a focal point, this leads to an hourglass shape. If a detector is placed close to the focal point, the spot-like image formed by the light striking the detector would be small and bright. However, if the detector were positioned above or below this focal plane, the intensity of the spot would decrease and its size would increase." msgstr "" -#: ../../../chapters/3-fluorescence/2-formation_spatial/formation_spatial.md:0 -#: ../../../chapters/3-fluorescence/2-formation_spatial/formation_spatial.md:0 -#: ../../../chapters/3-fluorescence/2-formation_spatial/formation_spatial.md:0 -#: ../../../chapters/3-fluorescence/2-formation_spatial/formation_spatial.md:0 #: ../../../chapters/3-fluorescence/2-formation_spatial/formation_spatial.md:0 msgid "Question" msgstr "" @@ -164,10 +160,6 @@ msgstr "" msgid "However, how would you expect the _total amount_ of light to differ in a widefield image depending upon whether a plane is in-focus or not? In other words, would you expect more or less light in the focal plane than in other planes above or below it?" msgstr "" -#: ../../../chapters/3-fluorescence/2-formation_spatial/formation_spatial.md:0 -#: ../../../chapters/3-fluorescence/2-formation_spatial/formation_spatial.md:0 -#: ../../../chapters/3-fluorescence/2-formation_spatial/formation_spatial.md:0 -#: ../../../chapters/3-fluorescence/2-formation_spatial/formation_spatial.md:0 #: ../../../chapters/3-fluorescence/2-formation_spatial/formation_spatial.md:0 msgid "Answer" msgstr "" diff --git a/locales/_build/gettext/chapters/3-fluorescence/3-formation_noise/formation_noise.pot b/locales/_build/gettext/chapters/3-fluorescence/3-formation_noise/formation_noise.pot index 51bdea79..108f2948 100644 --- a/locales/_build/gettext/chapters/3-fluorescence/3-formation_noise/formation_noise.pot +++ b/locales/_build/gettext/chapters/3-fluorescence/3-formation_noise/formation_noise.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -160,8 +160,6 @@ msgstr "" msgid "\\textrm{SNR} = \\frac{\\textrm{Signal}}{\\textrm{Noise standard deviation}}" msgstr "" -#: ../../../chapters/3-fluorescence/3-formation_noise/formation_noise.md:0 -#: ../../../chapters/3-fluorescence/3-formation_noise/formation_noise.md:0 #: ../../../chapters/3-fluorescence/3-formation_noise/formation_noise.md:0 msgid "Question" msgstr "" @@ -186,8 +184,6 @@ msgstr "" msgid "For the purposes of this question, you should assume that read noise is the only noise present (ignore photon noise)." msgstr "" -#: ../../../chapters/3-fluorescence/3-formation_noise/formation_noise.md:0 -#: ../../../chapters/3-fluorescence/3-formation_noise/formation_noise.md:0 #: ../../../chapters/3-fluorescence/3-formation_noise/formation_noise.md:0 msgid "Answer" msgstr "" diff --git a/locales/_build/gettext/chapters/3-fluorescence/4-microscope_types/microscope_types.pot b/locales/_build/gettext/chapters/3-fluorescence/4-microscope_types/microscope_types.pot index 6f8c37e8..4530f50b 100644 --- a/locales/_build/gettext/chapters/3-fluorescence/4-microscope_types/microscope_types.pot +++ b/locales/_build/gettext/chapters/3-fluorescence/4-microscope_types/microscope_types.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" @@ -116,9 +116,6 @@ msgstr "" msgid "However, these advantages comes with a major drawback. Images usually contain thousands to millions of pixels, and so only a tiny fraction of the time required to record an image is spent detecting photons for any one pixel in a LSCM image -- unlike in the widefield case, where photons can be detected for all pixels over the entire image acquisition time. This can cause LSCM image acquisition to be comparatively slow, noisy (in terms of few detected photons) or both. Spatial information is therefore gained at a cost in noise and/or temporal resolution." msgstr "" -#: ../../../chapters/3-fluorescence/4-microscope_types/microscope_types.md:0 -#: ../../../chapters/3-fluorescence/4-microscope_types/microscope_types.md:0 -#: ../../../chapters/3-fluorescence/4-microscope_types/microscope_types.md:0 #: ../../../chapters/3-fluorescence/4-microscope_types/microscope_types.md:0 msgid "Question" msgstr "" @@ -127,9 +124,6 @@ msgstr "" msgid "Why is it often recommended that the pinhole in LSCM be set to have the same size as one Airy disk? And why is it sometimes better not to strictly follow this recommendation?" msgstr "" -#: ../../../chapters/3-fluorescence/4-microscope_types/microscope_types.md:0 -#: ../../../chapters/3-fluorescence/4-microscope_types/microscope_types.md:0 -#: ../../../chapters/3-fluorescence/4-microscope_types/microscope_types.md:0 #: ../../../chapters/3-fluorescence/4-microscope_types/microscope_types.md:0 msgid "Answer" msgstr "" diff --git a/locales/_build/gettext/chapters/appendices/macros/macro_dog.pot b/locales/_build/gettext/chapters/appendices/macros/macro_dog.pot index 45eed6b3..6fe10210 100644 --- a/locales/_build/gettext/chapters/appendices/macros/macro_dog.pot +++ b/locales/_build/gettext/chapters/appendices/macros/macro_dog.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/appendices/macros/macro_intro.pot b/locales/_build/gettext/chapters/appendices/macros/macro_intro.pot index c6f6ca46..4b8ed37f 100644 --- a/locales/_build/gettext/chapters/appendices/macros/macro_intro.pot +++ b/locales/_build/gettext/chapters/appendices/macros/macro_intro.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/appendices/macros/macro_simulating.pot b/locales/_build/gettext/chapters/appendices/macros/macro_simulating.pot index 71ac4334..f87d3d00 100644 --- a/locales/_build/gettext/chapters/appendices/macros/macro_simulating.pot +++ b/locales/_build/gettext/chapters/appendices/macros/macro_simulating.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/appendices/next_steps/next_steps.pot b/locales/_build/gettext/chapters/appendices/next_steps/next_steps.pot index 23e496fc..32e97058 100644 --- a/locales/_build/gettext/chapters/appendices/next_steps/next_steps.pot +++ b/locales/_build/gettext/chapters/appendices/next_steps/next_steps.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/chapters/appendices/python/python.pot b/locales/_build/gettext/chapters/appendices/python/python.pot index 73ace356..79d700d7 100644 --- a/locales/_build/gettext/chapters/appendices/python/python.pot +++ b/locales/_build/gettext/chapters/appendices/python/python.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/images/openslide/README.pot b/locales/_build/gettext/images/openslide/README.pot index 70c7f16e..f37bb4a5 100644 --- a/locales/_build/gettext/images/openslide/README.pot +++ b/locales/_build/gettext/images/openslide/README.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n" diff --git a/locales/_build/gettext/index.pot b/locales/_build/gettext/index.pot index af738c93..d25608cb 100644 --- a/locales/_build/gettext/index.pot +++ b/locales/_build/gettext/index.pot @@ -1,5 +1,5 @@ # SOME DESCRIPTIVE TITLE. -# Copyright (C) 2022-2024 +# Copyright (C) 2022-2025 # This file is distributed under the same license as the bioimage-book package. # FIRST AUTHOR , YEAR. # @@ -8,7 +8,7 @@ msgid "" msgstr "" "Project-Id-Version: bioimage-book \n" "Report-Msgid-Bugs-To: \n" -"POT-Creation-Date: 2024-02-05 16:49+0000\n" +"POT-Creation-Date: 2026-10-21 15:02+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME \n" "Language-Team: LANGUAGE \n"