Issues

• Don't modify the parameters passed to orderly

  mrc-ide/priority-pathogens#68 · Filter by author sangeetabhatia03 opened on Apr 17, 2025
  

• Address orderly deprecation warnings

  mrc-ide/priority-pathogens#60 · Filter by author tristan-myles opened on Feb 26, 2025
  

• Make consistent variable names in all dbs

  mrc-ide/priority-pathogens#58 · Filter by author kellymccain28 opened on Jan 15, 2025

• Update vignette data to be dynamic

  mrc-ide/priority-pathogens#56 · Filter by author tristan-myles opened on Jan 9, 2025
  

• Lassa seroprevalence estimate missing from map

  mrc-ide/priority-pathogens#55 · Filter by author patcatgit opened on Oct 31, 2024
  

• Needs newlines in quote environment

  mrc-ide/priority-pathogens#52 · Filter by author athowes opened on Sep 5, 2024
  

• Text overlap in LASV QA figure

  mrc-ide/priority-pathogens#51 · Filter by author athowes opened on Sep 5, 2024
  

• In the db_extraction task need to extract comments from access dbs for analysis.

  help wanted
  mrc-ide/priority-pathogens#50 · Filter by author cm401 opened on Sep 5, 2024
  

• Can we improve the efficiency of the gh-pages PR check by caching package?

  question
  mrc-ide/priority-pathogens#41 · Filter by author tristan-myles opened on Jun 19, 2024

• Should we only trigger a website build of specific paths are updated?

  question
  mrc-ide/priority-pathogens#40 · Filter by author tristan-myles opened on Jun 19, 2024

• Update priority-pathogens gh-pages home page text

  documentation
  mrc-ide/priority-pathogens#39 · Filter by author tristan-myles opened on Jun 19, 2024
  1

• share orderly outputs with external world

  enhancement
  mrc-ide/priority-pathogens#38 · Filter by author sangeetabhatia03 opened on Jun 17, 2024
  

• orderly task to populate a vignette

  mrc-ide/priority-pathogens#37 · Filter by author sangeetabhatia03 opened on Jun 17, 2024
  

• Automated checks for data consistency

  enhancement
  mrc-ide/priority-pathogens#36 · Filter by author sangeetabhatia03 opened on Jun 17, 2024
  1

  

• refactor db_Cleaning

  mrc-ide/priority-pathogens#35 · Filter by author sangeetabhatia03 opened on Jun 17, 2024
  

• Live updating of Marburg

  mrc-ide/priority-pathogens#34 · Filter by author ruthmccabe opened on Jun 12, 2024
  1

• Marburg (inclusion of additional paper) + updated literature search

  mrc-ide/priority-pathogens#33 · Filter by author cm401 opened on May 16, 2024
  4

  

• create dummy outbreaks file for pathogens where outbreak data is not extracted

  mrc-ide/priority-pathogens#32 · Filter by author sangeetabhatia03 opened on May 14, 2024
  

• document which function lives in priority_pathogens vs epireview in either discussion / wiki with reasons.

  mrc-ide/priority-pathogens#24 · Filter by author cm401 opened on Apr 11, 2024
  

• Check that one of 'duplicates' is included

  mrc-ide/priority-pathogens#19 · Filter by author sangeetabhatia03 opened on Feb 29, 2024

• Wiki example mistake?

  mrc-ide/priority-pathogens#4 · Filter by author RJSheppard opened on Jul 6, 2023