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<!-- HTML header for doxygen 1.8.9.1-->
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
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<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
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<meta name="keywords" content="MRI, magnetic resonance, imaging, MR, NMR, sequence">
<meta name="description" content="Open source pulse sequences for NMR and MRI">
<meta name="author" content="University Medical Center Freiburg">
<link rel="shortcut icon" href="http://pulseq.github.io/favicon.ico" type="image/x-icon" />
<title>Open-source pulse sequences: ExternalSequence Class Reference</title>
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<td id="projectlogo" style="vertical-align:middle"><img alt="Logo" src="logo.png"/></td>
<td style="padding-left: 1.5em;">
<div id="projectname">Open-source pulse sequences
 <span id="projectnumber"></span>
</div>
<div id="projectbrief">Easily create and execute MR sequences</div>
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<!-- Generated by Doxygen 1.9.8 -->
<script type="text/javascript">
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<div class="header">
<div class="summary">
<a href="#pub-types">Public Types</a> |
<a href="#pub-methods">Public Member Functions</a> |
<a href="#pub-static-methods">Static Public Member Functions</a> |
<a href="#pri-types">Private Types</a> |
<a href="#pri-methods">Private Member Functions</a> |
<a href="#pri-static-methods">Static Private Member Functions</a> |
<a href="#pri-attribs">Private Attributes</a> |
<a href="#pri-static-attribs">Static Private Attributes</a> |
<a href="classExternalSequence-members.html">List of all members</a> </div>
<div class="headertitle"><div class="title">ExternalSequence Class Reference</div></div>
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<p>Data representing the entire MR sequence.
<a href="classExternalSequence.html#details">More...</a></p>
<p><code>#include <<a class="el" href="ExternalSequence_8h_source.html">ExternalSequence.h</a>></code></p>
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<center><span class="legend">[<a href="graph_legend.html">legend</a>]</span></center></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-types" name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:acdd21ba66bdedfa09c57b865bd344002" id="r_acdd21ba66bdedfa09c57b865bd344002"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#acdd21ba66bdedfa09c57b865bd344002">load_mode</a> { <b>lm_singlefile</b> =0
, <b>lm_shapes</b>
, <b>lm_events</b>
, <b>lm_blocks</b>
}</td></tr>
<tr class="memdesc:acdd21ba66bdedfa09c57b865bd344002"><td class="mdescLeft"> </td><td class="mdescRight">Load the sequence from a single stream. <a href="classExternalSequence.html#acdd21ba66bdedfa09c57b865bd344002">More...</a><br /></td></tr>
<tr class="separator:acdd21ba66bdedfa09c57b865bd344002"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a17989c2ed1ea693e7be535a5cf6dc1a0" id="r_a17989c2ed1ea693e7be535a5cf6dc1a0"><td class="memItemLeft" align="right" valign="top"><a id="a17989c2ed1ea693e7be535a5cf6dc1a0" name="a17989c2ed1ea693e7be535a5cf6dc1a0"></a>
typedef void(* </td><td class="memItemRight" valign="bottom"><b>PrintFunPtr</b>) (const std::string &str)</td></tr>
<tr class="memdesc:a17989c2ed1ea693e7be535a5cf6dc1a0"><td class="mdescLeft"> </td><td class="mdescRight">A pointer-type to the low-level print function. <br /></td></tr>
<tr class="separator:a17989c2ed1ea693e7be535a5cf6dc1a0"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:aa55ba1a15595c8af0ea62997a2206ef0" id="r_aa55ba1a15595c8af0ea62997a2206ef0"><td class="memItemLeft" align="right" valign="top"><a id="aa55ba1a15595c8af0ea62997a2206ef0" name="aa55ba1a15595c8af0ea62997a2206ef0"></a>
 </td><td class="memItemRight" valign="bottom"><b>ExternalSequence</b> ()</td></tr>
<tr class="memdesc:aa55ba1a15595c8af0ea62997a2206ef0"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <br /></td></tr>
<tr class="separator:aa55ba1a15595c8af0ea62997a2206ef0"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a89861eb8f7cf1d7a663bd28a7a9b4646" id="r_a89861eb8f7cf1d7a663bd28a7a9b4646"><td class="memItemLeft" align="right" valign="top"><a id="a89861eb8f7cf1d7a663bd28a7a9b4646" name="a89861eb8f7cf1d7a663bd28a7a9b4646"></a>
 </td><td class="memItemRight" valign="bottom"><b>~ExternalSequence</b> ()</td></tr>
<tr class="memdesc:a89861eb8f7cf1d7a663bd28a7a9b4646"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <br /></td></tr>
<tr class="separator:a89861eb8f7cf1d7a663bd28a7a9b4646"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab1217ab4d88059d1ae512ca7518dc988" id="r_ab1217ab4d88059d1ae512ca7518dc988"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#ab1217ab4d88059d1ae512ca7518dc988">reset</a> ()</td></tr>
<tr class="memdesc:ab1217ab4d88059d1ae512ca7518dc988"><td class="mdescLeft"> </td><td class="mdescRight">Reset the sequence in memory. <br /></td></tr>
<tr class="separator:ab1217ab4d88059d1ae512ca7518dc988"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a85f0b642cd6eb8c9dd51efbb31df672c" id="r_a85f0b642cd6eb8c9dd51efbb31df672c"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a85f0b642cd6eb8c9dd51efbb31df672c">load</a> (std::string path)</td></tr>
<tr class="memdesc:a85f0b642cd6eb8c9dd51efbb31df672c"><td class="mdescLeft"> </td><td class="mdescRight">Load the sequence from file. <br /></td></tr>
<tr class="separator:a85f0b642cd6eb8c9dd51efbb31df672c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af453fdae8fc5f6c949900ddfd4bfc1df" id="r_af453fdae8fc5f6c949900ddfd4bfc1df"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#af453fdae8fc5f6c949900ddfd4bfc1df">load_from_buffer</a> (char *buffer)</td></tr>
<tr class="memdesc:af453fdae8fc5f6c949900ddfd4bfc1df"><td class="mdescLeft"> </td><td class="mdescRight">Load the sequence from a single stream. <br /></td></tr>
<tr class="separator:af453fdae8fc5f6c949900ddfd4bfc1df"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aadafd55da2e3434baf16a8347660c5ac" id="r_aadafd55da2e3434baf16a8347660c5ac"><td class="memItemLeft" align="right" valign="top"><a id="aadafd55da2e3434baf16a8347660c5ac" name="aadafd55da2e3434baf16a8347660c5ac"></a>
bool </td><td class="memItemRight" valign="bottom"><b>load</b> (std::istream &data_stream, <a class="el" href="classExternalSequence.html#acdd21ba66bdedfa09c57b865bd344002">load_mode</a> loadMose=lm_singlefile)</td></tr>
<tr class="separator:aadafd55da2e3434baf16a8347660c5ac"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1d98440d237523cd0ede032d9d574554" id="r_a1d98440d237523cd0ede032d9d574554"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a1d98440d237523cd0ede032d9d574554">GetVersion</a> ()</td></tr>
<tr class="memdesc:a1d98440d237523cd0ede032d9d574554"><td class="mdescLeft"> </td><td class="mdescRight">Report the version of the loaded sequence. <br /></td></tr>
<tr class="separator:a1d98440d237523cd0ede032d9d574554"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4f8ec2a770a0a593214dfdd7212311db" id="r_a4f8ec2a770a0a593214dfdd7212311db"><td class="memItemLeft" align="right" valign="top">std::vector< double > </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a4f8ec2a770a0a593214dfdd7212311db">GetDefinition</a> (std::string key)</td></tr>
<tr class="memdesc:a4f8ec2a770a0a593214dfdd7212311db"><td class="mdescLeft"> </td><td class="mdescRight">Lookup the custom definition. <br /></td></tr>
<tr class="separator:a4f8ec2a770a0a593214dfdd7212311db"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1aa6f4814b0f262b07023cd65efec31f" id="r_a1aa6f4814b0f262b07023cd65efec31f"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a1aa6f4814b0f262b07023cd65efec31f">GetDefinitionStr</a> (std::string key)</td></tr>
<tr class="memdesc:a1aa6f4814b0f262b07023cd65efec31f"><td class="mdescLeft"> </td><td class="mdescRight">Lookup the custom definition. <br /></td></tr>
<tr class="separator:a1aa6f4814b0f262b07023cd65efec31f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa612706abcabecefc41552cf9ecb9a66" id="r_aa612706abcabecefc41552cf9ecb9a66"><td class="memItemLeft" align="right" valign="top">std::vector< std::string > </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#aa612706abcabecefc41552cf9ecb9a66">GetAllDefinitions</a> ()</td></tr>
<tr class="memdesc:aa612706abcabecefc41552cf9ecb9a66"><td class="mdescLeft"> </td><td class="mdescRight">Return a vector of all definitions (keys) <br /></td></tr>
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<tr class="memitem:a80e5cb9aacb4d431d9384ce963becfe8" id="r_a80e5cb9aacb4d431d9384ce963becfe8"><td class="memItemLeft" align="right" valign="top"><a id="a80e5cb9aacb4d431d9384ce963becfe8" name="a80e5cb9aacb4d431d9384ce963becfe8"></a>
int </td><td class="memItemRight" valign="bottom"><b>GetNumberOfBlocks</b> (void)</td></tr>
<tr class="memdesc:a80e5cb9aacb4d431d9384ce963becfe8"><td class="mdescLeft"> </td><td class="mdescRight">Return number of sequence blocks. <br /></td></tr>
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<tr class="memitem:ab9f9070c213b6e35850c4f7352cce32f" id="r_ab9f9070c213b6e35850c4f7352cce32f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classSeqBlock.html">SeqBlock</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#ab9f9070c213b6e35850c4f7352cce32f">GetBlock</a> (int blockIndex)</td></tr>
<tr class="memdesc:ab9f9070c213b6e35850c4f7352cce32f"><td class="mdescLeft"> </td><td class="mdescRight">Construct a sequence block from the library events. <br /></td></tr>
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<tr class="memitem:a64a4fad365448d9b767a4ed8b0c589d5" id="r_a64a4fad365448d9b767a4ed8b0c589d5"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a64a4fad365448d9b767a4ed8b0c589d5">decodeBlock</a> (<a class="el" href="classSeqBlock.html">SeqBlock</a> *block)</td></tr>
<tr class="memdesc:a64a4fad365448d9b767a4ed8b0c589d5"><td class="mdescLeft"> </td><td class="mdescRight">Decode a block by looking up indexed events. <br /></td></tr>
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<tr class="memitem:ad289f7878a8db08a9fde911b9dff0e46" id="r_ad289f7878a8db08a9fde911b9dff0e46"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#ad289f7878a8db08a9fde911b9dff0e46">decodeExtTrapGradInBlock</a> (<a class="el" href="classSeqBlock.html">SeqBlock</a> *block)</td></tr>
<tr class="memdesc:ad289f7878a8db08a9fde911b9dff0e46"><td class="mdescLeft"> </td><td class="mdescRight">Decode only the ext trap part of the block. <br /></td></tr>
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<tr class="memitem:a1c293a80a36f9e2875a8b3cd80c09747" id="r_a1c293a80a36f9e2875a8b3cd80c09747"><td class="memItemLeft" align="right" valign="top"><a id="a1c293a80a36f9e2875a8b3cd80c09747" name="a1c293a80a36f9e2875a8b3cd80c09747"></a>
bool </td><td class="memItemRight" valign="bottom"><b>isGradientInBlockStartAtNonZero</b> (<a class="el" href="classSeqBlock.html">SeqBlock</a> *block, int channel)</td></tr>
<tr class="memdesc:a1c293a80a36f9e2875a8b3cd80c09747"><td class="mdescLeft"> </td><td class="mdescRight">Return <code>true</code> if block has a gradient which starts at a non-zero value on given channel (only possible for arbitrary or ExtTrap gradients) <br /></td></tr>
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<tr class="memitem:a5ccb9a629cff16fc7969fd8fbcd37f29" id="r_a5ccb9a629cff16fc7969fd8fbcd37f29"><td class="memItemLeft" align="right" valign="top"><a id="a5ccb9a629cff16fc7969fd8fbcd37f29" name="a5ccb9a629cff16fc7969fd8fbcd37f29"></a>
bool </td><td class="memItemRight" valign="bottom"><b>isAllGradientsInBlockStartAtZero</b> (<a class="el" href="classSeqBlock.html">SeqBlock</a> *block)</td></tr>
<tr class="memdesc:a5ccb9a629cff16fc7969fd8fbcd37f29"><td class="mdescLeft"> </td><td class="mdescRight">Return <code>true</code> if block has no gradients which start at a non-zero value on any channel (only possible for arbitrary or ExtTrap gradients) <br /></td></tr>
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std::string </td><td class="memItemRight" valign="bottom"><b>getCounterIdAsString</b> (int nID)</td></tr>
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std::string </td><td class="memItemRight" valign="bottom"><b>getFlagIdAsString</b> (int nID)</td></tr>
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bool </td><td class="memItemRight" valign="bottom"><b>isSigned</b> ()</td></tr>
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std::string </td><td class="memItemRight" valign="bottom"><b>getSignature</b> ()</td></tr>
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<tr class="memitem:ac2cea2d4b2ff4101f7bffd5d39778295" id="r_ac2cea2d4b2ff4101f7bffd5d39778295"><td class="memItemLeft" align="right" valign="top"><a id="ac2cea2d4b2ff4101f7bffd5d39778295" name="ac2cea2d4b2ff4101f7bffd5d39778295"></a>
std::string </td><td class="memItemRight" valign="bottom"><b>getSignatureType</b> ()</td></tr>
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<tr class="memitem:a27fe144de5c7cd50fc9d601324a6ed99" id="r_a27fe144de5c7cd50fc9d601324a6ed99"><td class="memItemLeft" align="right" valign="top"><a id="a27fe144de5c7cd50fc9d601324a6ed99" name="a27fe144de5c7cd50fc9d601324a6ed99"></a>
bool </td><td class="memItemRight" valign="bottom"><b>isSignatureCheckSucceeded</b> ()</td></tr>
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<tr class="memitem:aaee62983dbeb043fc3d47e75c41f61e0" id="r_aaee62983dbeb043fc3d47e75c41f61e0"><td class="memItemLeft" align="right" valign="top"><a id="aaee62983dbeb043fc3d47e75c41f61e0" name="aaee62983dbeb043fc3d47e75c41f61e0"></a>
bool </td><td class="memItemRight" valign="bottom"><b>usesRfShimExtension</b> ()</td></tr>
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<tr class="memitem:a27359f9f4c32f71ea8ceb2d27d9c8cf8" id="r_a27359f9f4c32f71ea8ceb2d27d9c8cf8"><td class="memItemLeft" align="right" valign="top"><a id="a27359f9f4c32f71ea8ceb2d27d9c8cf8" name="a27359f9f4c32f71ea8ceb2d27d9c8cf8"></a>
bool </td><td class="memItemRight" valign="bottom"><b>getRfShimEventByID</b> (int id, <a class="el" href="structRfShimmingEvent.html">RfShimmingEvent</a> &rfse)</td></tr>
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</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-static-methods" name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:a1836fdfd6d36a0f7130c6ee76b8b4f15" id="r_a1836fdfd6d36a0f7130c6ee76b8b4f15"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a1836fdfd6d36a0f7130c6ee76b8b4f15">print_msg</a> (<a class="el" href="ExternalSequence_8h.html#ac6606ebe91c8ac66a2c314c79f5ab013">MessageType</a> level, std::ostream &ss)</td></tr>
<tr class="memdesc:a1836fdfd6d36a0f7130c6ee76b8b4f15"><td class="mdescLeft"> </td><td class="mdescRight">Display an output message. <br /></td></tr>
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<tr class="memitem:a9a82b5f6f0aed6ac614489b676db10be" id="r_a9a82b5f6f0aed6ac614489b676db10be"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a9a82b5f6f0aed6ac614489b676db10be">SetPrintFunction</a> (<a class="el" href="classExternalSequence.html#a17989c2ed1ea693e7be535a5cf6dc1a0">PrintFunPtr</a> fun)</td></tr>
<tr class="memdesc:a9a82b5f6f0aed6ac614489b676db10be"><td class="mdescLeft"> </td><td class="mdescRight">Set the output print function. <br /></td></tr>
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</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-types" name="pri-types"></a>
Private Types</h2></td></tr>
<tr class="memitem:aeb45dd9fe28f94ae0579a13d23f9396b" id="r_aeb45dd9fe28f94ae0579a13d23f9396b"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#aeb45dd9fe28f94ae0579a13d23f9396b">gl_ret</a> { <b>gl_false</b> =0
, <b>gl_true</b>
, <b>gl_truncated</b>
}</td></tr>
<tr class="memdesc:aeb45dd9fe28f94ae0579a13d23f9396b"><td class="mdescLeft"> </td><td class="mdescRight">Read a line from the input stream <em>independent of line ending</em>. <a href="classExternalSequence.html#aeb45dd9fe28f94ae0579a13d23f9396b">More...</a><br /></td></tr>
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<tr class="memitem:a609da6638cf7df9d75075997181c0574" id="r_a609da6638cf7df9d75075997181c0574"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a609da6638cf7df9d75075997181c0574">dl_ret</a> { <b>dl_ok</b> = 0
, <b>dl_unknown</b> = 1
, <b>dl_ignored</b> = 2
, <b>dl_error</b> = -1
}</td></tr>
<tr class="memdesc:a609da6638cf7df9d75075997181c0574"><td class="mdescLeft"> </td><td class="mdescRight">Check the IDs contains references to valid labels in the library Transform order of Labels as in MHDheader. <a href="classExternalSequence.html#a609da6638cf7df9d75075997181c0574">More...</a><br /></td></tr>
<tr class="separator:a609da6638cf7df9d75075997181c0574"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
Private Member Functions</h2></td></tr>
<tr class="memitem:a7846a4f983f704bba837c620c14a06fa" id="r_a7846a4f983f704bba837c620c14a06fa"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a7846a4f983f704bba837c620c14a06fa">buildFileIndex</a> (std::istream &stream)</td></tr>
<tr class="memdesc:a7846a4f983f704bba837c620c14a06fa"><td class="mdescLeft"> </td><td class="mdescRight">Search the file stream for section headers e.g. [RF], [GRAD] etc. <br /></td></tr>
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<tr class="memitem:ae80b6eac21ecfbe8fb6ecf6930c1b8bf" id="r_ae80b6eac21ecfbe8fb6ecf6930c1b8bf"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#ae80b6eac21ecfbe8fb6ecf6930c1b8bf">skipComments</a> (std::istream &stream, char *buffer)</td></tr>
<tr class="memdesc:ae80b6eac21ecfbe8fb6ecf6930c1b8bf"><td class="mdescLeft"> </td><td class="mdescRight">Skip the comments and empty lines in the given input stream. <br /></td></tr>
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<tr class="memitem:a5920744cfbca0e769387aea8d948debc" id="r_a5920744cfbca0e769387aea8d948debc"><td class="memItemLeft" align="right" valign="top">char * </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a5920744cfbca0e769387aea8d948debc">stripWhiteSpace</a> (char *buffer)</td></tr>
<tr class="memdesc:a5920744cfbca0e769387aea8d948debc"><td class="mdescLeft"> </td><td class="mdescRight">Strip any empty characters at th beginning or at the end of the string. <br /></td></tr>
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<tr class="memitem:a4a4ef972585dd024a8eaf437aa151a19" id="r_a4a4ef972585dd024a8eaf437aa151a19"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a4a4ef972585dd024a8eaf437aa151a19">decompressShape</a> (<a class="el" href="structCompressedShape.html">CompressedShape</a> &encoded, float *shape)</td></tr>
<tr class="memdesc:a4a4ef972585dd024a8eaf437aa151a19"><td class="mdescLeft"> </td><td class="mdescRight">Decompress a run-length compressed shape. <br /></td></tr>
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<tr class="memitem:a66b1bbc2b27281533fa5df466016a83a" id="r_a66b1bbc2b27281533fa5df466016a83a"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a66b1bbc2b27281533fa5df466016a83a">checkBlockReferences</a> (<a class="el" href="structEventIDs.html">EventIDs</a> &events)</td></tr>
<tr class="memdesc:a66b1bbc2b27281533fa5df466016a83a"><td class="mdescLeft"> </td><td class="mdescRight">Check the IDs contains references to valid events in the library. <br /></td></tr>
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<tr class="memitem:a4a5b59c38694728411d48cebd3ed5d23" id="r_a4a5b59c38694728411d48cebd3ed5d23"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a4a5b59c38694728411d48cebd3ed5d23">checkGradient</a> (<a class="el" href="classSeqBlock.html">SeqBlock</a> &block)</td></tr>
<tr class="memdesc:a4a5b59c38694728411d48cebd3ed5d23"><td class="mdescLeft"> </td><td class="mdescRight">Check the shapes defining the arbitrary gradient events (if present) <br /></td></tr>
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<tr class="memitem:a65962ae575700ed3eb0b6060f9370be9" id="r_a65962ae575700ed3eb0b6060f9370be9"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classExternalSequence.html#a65962ae575700ed3eb0b6060f9370be9">checkRF</a> (<a class="el" href="classSeqBlock.html">SeqBlock</a> &block)</td></tr>
<tr class="memdesc:a65962ae575700ed3eb0b6060f9370be9"><td class="mdescLeft"> </td><td class="mdescRight">Check the shapes defining the RF event (if present) <br /></td></tr>
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<tr class="memitem:a499532bd533066850603d2473b31d2a4" id="r_a499532bd533066850603d2473b31d2a4"><td class="memItemLeft" align="right" valign="top"><a id="a499532bd533066850603d2473b31d2a4" name="a499532bd533066850603d2473b31d2a4"></a>
int </td><td class="memItemRight" valign="bottom"><b>decodeLabel</b> (<a class="el" href="ExternalSequence_8h.html#a76ebce10fbe0fc0431f545d25965fe89">ExtType</a>, int &, char *, <a class="el" href="structLabelEvent.html">LabelEvent</a> &)</td></tr>
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</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-static-methods" name="pri-static-methods"></a>
Static Private Member Functions</h2></td></tr>
<tr class="memitem:a352fa073e0b480d39430b9b87e99fdda" id="r_a352fa073e0b480d39430b9b87e99fdda"><td class="memItemLeft" align="right" valign="top"><a id="a352fa073e0b480d39430b9b87e99fdda" name="a352fa073e0b480d39430b9b87e99fdda"></a>
static int </td><td class="memItemRight" valign="bottom"><b>getline</b> (std::istream &stream, char *buffer, const int MAX_SIZE, bool bRaw=false)</td></tr>
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<tr class="memitem:acaf901d2b1d77bd91aa2e8125f40d533" id="r_acaf901d2b1d77bd91aa2e8125f40d533"><td class="memItemLeft" align="right" valign="top"><a id="acaf901d2b1d77bd91aa2e8125f40d533" name="acaf901d2b1d77bd91aa2e8125f40d533"></a>
static void </td><td class="memItemRight" valign="bottom"><b>defaultPrint</b> (const std::string &str)</td></tr>
<tr class="memdesc:acaf901d2b1d77bd91aa2e8125f40d533"><td class="mdescLeft"> </td><td class="mdescRight">Print string to standard output (with newline character) <br /></td></tr>
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</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
Private Attributes</h2></td></tr>
<tr class="memitem:a6b043bbe0bc4fc8ca9d73506c9b59fb6" id="r_a6b043bbe0bc4fc8ca9d73506c9b59fb6"><td class="memItemLeft" align="right" valign="top"><a id="a6b043bbe0bc4fc8ca9d73506c9b59fb6" name="a6b043bbe0bc4fc8ca9d73506c9b59fb6"></a>
int </td><td class="memItemRight" valign="bottom"><b>version_major</b></td></tr>
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int </td><td class="memItemRight" valign="bottom"><b>version_minor</b></td></tr>
<tr class="separator:a00a34204150c59d0c12258524085aea6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa33dc635ad0226fbc283474b3b0eec9b" id="r_aa33dc635ad0226fbc283474b3b0eec9b"><td class="memItemLeft" align="right" valign="top"><a id="aa33dc635ad0226fbc283474b3b0eec9b" name="aa33dc635ad0226fbc283474b3b0eec9b"></a>
int </td><td class="memItemRight" valign="bottom"><b>version_revision</b></td></tr>
<tr class="separator:aa33dc635ad0226fbc283474b3b0eec9b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aab3d244c48ce55916f1b390d993efdd6" id="r_aab3d244c48ce55916f1b390d993efdd6"><td class="memItemLeft" align="right" valign="top"><a id="aab3d244c48ce55916f1b390d993efdd6" name="aab3d244c48ce55916f1b390d993efdd6"></a>
int </td><td class="memItemRight" valign="bottom"><b>version_combined</b></td></tr>
<tr class="separator:aab3d244c48ce55916f1b390d993efdd6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a22b9c94c9935b0f265785d10df16ab5f" id="r_a22b9c94c9935b0f265785d10df16ab5f"><td class="memItemLeft" align="right" valign="top"><a id="a22b9c94c9935b0f265785d10df16ab5f" name="a22b9c94c9935b0f265785d10df16ab5f"></a>
std::map< std::string, int > </td><td class="memItemRight" valign="bottom"><b>m_fileIndex</b></td></tr>
<tr class="memdesc:a22b9c94c9935b0f265785d10df16ab5f"><td class="mdescLeft"> </td><td class="mdescRight">File location of sections, [RF], [ADC] etc. <br /></td></tr>
<tr class="separator:a22b9c94c9935b0f265785d10df16ab5f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad0cdcccca0b497c435e4e7a5a0cbd156" id="r_ad0cdcccca0b497c435e4e7a5a0cbd156"><td class="memItemLeft" align="right" valign="top"><a id="ad0cdcccca0b497c435e4e7a5a0cbd156" name="ad0cdcccca0b497c435e4e7a5a0cbd156"></a>
std::set< int > </td><td class="memItemRight" valign="bottom"><b>m_fileSections</b></td></tr>
<tr class="memdesc:ad0cdcccca0b497c435e4e7a5a0cbd156"><td class="mdescLeft"> </td><td class="mdescRight">File location of sections and EOF additionally. <br /></td></tr>
<tr class="separator:ad0cdcccca0b497c435e4e7a5a0cbd156"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a220e53cda32b28df3c7ff42a639bedbc" id="r_a220e53cda32b28df3c7ff42a639bedbc"><td class="memItemLeft" align="right" valign="top"><a id="a220e53cda32b28df3c7ff42a639bedbc" name="a220e53cda32b28df3c7ff42a639bedbc"></a>
std::vector< <a class="el" href="structEventIDs.html">EventIDs</a> > </td><td class="memItemRight" valign="bottom"><b>m_blocks</b></td></tr>
<tr class="memdesc:a220e53cda32b28df3c7ff42a639bedbc"><td class="mdescLeft"> </td><td class="mdescRight">List of sequence blocks. <br /></td></tr>
<tr class="separator:a220e53cda32b28df3c7ff42a639bedbc"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad98009c5260c6725954f7127337a13c9" id="r_ad98009c5260c6725954f7127337a13c9"><td class="memItemLeft" align="right" valign="top"><a id="ad98009c5260c6725954f7127337a13c9" name="ad98009c5260c6725954f7127337a13c9"></a>
std::vector< long > </td><td class="memItemRight" valign="bottom"><b>m_blockDurations_ru</b></td></tr>
<tr class="memdesc:ad98009c5260c6725954f7127337a13c9"><td class="mdescLeft"> </td><td class="mdescRight">List of block durations expressed in duration raster units. <br /></td></tr>
<tr class="separator:ad98009c5260c6725954f7127337a13c9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af8e1cf8d2577e1c92a7370fa8c24e62f" id="r_af8e1cf8d2577e1c92a7370fa8c24e62f"><td class="memItemLeft" align="right" valign="top"><a id="af8e1cf8d2577e1c92a7370fa8c24e62f" name="af8e1cf8d2577e1c92a7370fa8c24e62f"></a>
std::map< std::string, std::string > </td><td class="memItemRight" valign="bottom"><b>m_definitions_str</b></td></tr>
<tr class="memdesc:af8e1cf8d2577e1c92a7370fa8c24e62f"><td class="mdescLeft"> </td><td class="mdescRight">Custom definitions provided through [DEFINITIONS] section (stored as strings) <br /></td></tr>
<tr class="separator:af8e1cf8d2577e1c92a7370fa8c24e62f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee9af805d27563839ab1156c7e657a3" id="r_aaee9af805d27563839ab1156c7e657a3"><td class="memItemLeft" align="right" valign="top"><a id="aaee9af805d27563839ab1156c7e657a3" name="aaee9af805d27563839ab1156c7e657a3"></a>
std::map< std::string, std::vector< double > > </td><td class="memItemRight" valign="bottom"><b>m_definitions</b></td></tr>
<tr class="memdesc:aaee9af805d27563839ab1156c7e657a3"><td class="mdescLeft"> </td><td class="mdescRight">Custom definitions provided through [DEFINITIONS] section (converted to doubles) <br /></td></tr>
<tr class="separator:aaee9af805d27563839ab1156c7e657a3"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acafa066e9e95ed3ef343f09d76f1ad04" id="r_acafa066e9e95ed3ef343f09d76f1ad04"><td class="memItemLeft" align="right" valign="top"><a id="acafa066e9e95ed3ef343f09d76f1ad04" name="acafa066e9e95ed3ef343f09d76f1ad04"></a>
std::map< std::string, std::string > </td><td class="memItemRight" valign="bottom"><b>m_signatureMap</b></td></tr>
<tr class="memdesc:acafa066e9e95ed3ef343f09d76f1ad04"><td class="mdescLeft"> </td><td class="mdescRight">A hash of the internal sequence data structures stored in the [SIGNATURE] section along with auxilary pieces of information. <br /></td></tr>
<tr class="separator:acafa066e9e95ed3ef343f09d76f1ad04"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a48cc2bbcc8fc4937d15fe11d42f8f4a2" id="r_a48cc2bbcc8fc4937d15fe11d42f8f4a2"><td class="memItemLeft" align="right" valign="top"><a id="a48cc2bbcc8fc4937d15fe11d42f8f4a2" name="a48cc2bbcc8fc4937d15fe11d42f8f4a2"></a>
bool </td><td class="memItemRight" valign="bottom"><b>m_bSignatureDefined</b></td></tr>
<tr class="separator:a48cc2bbcc8fc4937d15fe11d42f8f4a2"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad97e53e1c859fe6c800be1c737ca8086" id="r_ad97e53e1c859fe6c800be1c737ca8086"><td class="memItemLeft" align="right" valign="top"><a id="ad97e53e1c859fe6c800be1c737ca8086" name="ad97e53e1c859fe6c800be1c737ca8086"></a>
std::string </td><td class="memItemRight" valign="bottom"><b>m_strSignature</b></td></tr>
<tr class="separator:ad97e53e1c859fe6c800be1c737ca8086"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a38212dfe94fc61b95a5e175dd29c8b3c" id="r_a38212dfe94fc61b95a5e175dd29c8b3c"><td class="memItemLeft" align="right" valign="top"><a id="a38212dfe94fc61b95a5e175dd29c8b3c" name="a38212dfe94fc61b95a5e175dd29c8b3c"></a>
std::string </td><td class="memItemRight" valign="bottom"><b>m_strSignatureType</b></td></tr>
<tr class="separator:a38212dfe94fc61b95a5e175dd29c8b3c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a51c0e3ed831415b23e592de4af38ba1a" id="r_a51c0e3ed831415b23e592de4af38ba1a"><td class="memItemLeft" align="right" valign="top"><a id="a51c0e3ed831415b23e592de4af38ba1a" name="a51c0e3ed831415b23e592de4af38ba1a"></a>
std::string </td><td class="memItemRight" valign="bottom"><b>m_strCalculatedMD5Signature</b></td></tr>
<tr class="separator:a51c0e3ed831415b23e592de4af38ba1a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a93ce993d0171a1267761cca0c4439c81" id="r_a93ce993d0171a1267761cca0c4439c81"><td class="memItemLeft" align="right" valign="top"><a id="a93ce993d0171a1267761cca0c4439c81" name="a93ce993d0171a1267761cca0c4439c81"></a>
bool </td><td class="memItemRight" valign="bottom"><b>m_bSignatureCheckSucceeded</b></td></tr>
<tr class="separator:a93ce993d0171a1267761cca0c4439c81"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4cbb7ec3a21d2ef2cbad7c743e68bf7e" id="r_a4cbb7ec3a21d2ef2cbad7c743e68bf7e"><td class="memItemLeft" align="right" valign="top"><a id="a4cbb7ec3a21d2ef2cbad7c743e68bf7e" name="a4cbb7ec3a21d2ef2cbad7c743e68bf7e"></a>
std::map< int, <a class="el" href="structRFEvent.html">RFEvent</a> > </td><td class="memItemRight" valign="bottom"><b>m_rfLibrary</b></td></tr>
<tr class="memdesc:a4cbb7ec3a21d2ef2cbad7c743e68bf7e"><td class="mdescLeft"> </td><td class="mdescRight">Library of RF events. <br /></td></tr>
<tr class="separator:a4cbb7ec3a21d2ef2cbad7c743e68bf7e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:afb92c882f3f845e5875c348316c8974e" id="r_afb92c882f3f845e5875c348316c8974e"><td class="memItemLeft" align="right" valign="top"><a id="afb92c882f3f845e5875c348316c8974e" name="afb92c882f3f845e5875c348316c8974e"></a>
std::map< int, <a class="el" href="structGradEvent.html">GradEvent</a> > </td><td class="memItemRight" valign="bottom"><b>m_gradLibrary</b></td></tr>
<tr class="memdesc:afb92c882f3f845e5875c348316c8974e"><td class="mdescLeft"> </td><td class="mdescRight">Library of gradient events. <br /></td></tr>
<tr class="separator:afb92c882f3f845e5875c348316c8974e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a40a4cafa1ce99c9b42380d8b6e09633d" id="r_a40a4cafa1ce99c9b42380d8b6e09633d"><td class="memItemLeft" align="right" valign="top"><a id="a40a4cafa1ce99c9b42380d8b6e09633d" name="a40a4cafa1ce99c9b42380d8b6e09633d"></a>
std::map< int, <a class="el" href="structADCEvent.html">ADCEvent</a> > </td><td class="memItemRight" valign="bottom"><b>m_adcLibrary</b></td></tr>
<tr class="memdesc:a40a4cafa1ce99c9b42380d8b6e09633d"><td class="mdescLeft"> </td><td class="mdescRight">Library of ADC readouts. <br /></td></tr>
<tr class="separator:a40a4cafa1ce99c9b42380d8b6e09633d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a51d6f10b09cb51cad25146cdca5745b4" id="r_a51d6f10b09cb51cad25146cdca5745b4"><td class="memItemLeft" align="right" valign="top"><a id="a51d6f10b09cb51cad25146cdca5745b4" name="a51d6f10b09cb51cad25146cdca5745b4"></a>
std::map< int, long > </td><td class="memItemRight" valign="bottom"><b>m_tmpDelayLibrary</b></td></tr>
<tr class="memdesc:a51d6f10b09cb51cad25146cdca5745b4"><td class="mdescLeft"> </td><td class="mdescRight">Library of delays, only used for loading older files and is cleaned immediately before <a class="el" href="classExternalSequence.html#a85f0b642cd6eb8c9dd51efbb31df672c" title="Load the sequence from file.">load()</a> is finished. <br /></td></tr>
<tr class="separator:a51d6f10b09cb51cad25146cdca5745b4"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac74fd54f289eef2775ca3616a521c637" id="r_ac74fd54f289eef2775ca3616a521c637"><td class="memItemLeft" align="right" valign="top"><a id="ac74fd54f289eef2775ca3616a521c637" name="ac74fd54f289eef2775ca3616a521c637"></a>
std::map< int, <a class="el" href="structExtensionListEntry.html">ExtensionListEntry</a> > </td><td class="memItemRight" valign="bottom"><b>m_extensionLibrary</b></td></tr>
<tr class="memdesc:ac74fd54f289eef2775ca3616a521c637"><td class="mdescLeft"> </td><td class="mdescRight">Library of extension list entries. <br /></td></tr>
<tr class="separator:ac74fd54f289eef2775ca3616a521c637"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5335a4920b11d8e57618250fbc2fd4fe" id="r_a5335a4920b11d8e57618250fbc2fd4fe"><td class="memItemLeft" align="right" valign="top"><a id="a5335a4920b11d8e57618250fbc2fd4fe" name="a5335a4920b11d8e57618250fbc2fd4fe"></a>
std::map< int, std::pair< std::string, int > > </td><td class="memItemRight" valign="bottom"><b>m_extensionNameIDs</b></td></tr>
<tr class="memdesc:a5335a4920b11d8e57618250fbc2fd4fe"><td class="mdescLeft"> </td><td class="mdescRight">Map of extension IDs from the file to textIDs and internal known numeric IDs. <br /></td></tr>
<tr class="separator:a5335a4920b11d8e57618250fbc2fd4fe"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab41da9cab363af9a310a6a703d6ad30e" id="r_ab41da9cab363af9a310a6a703d6ad30e"><td class="memItemLeft" align="right" valign="top"><a id="ab41da9cab363af9a310a6a703d6ad30e" name="ab41da9cab363af9a310a6a703d6ad30e"></a>
std::map< int, <a class="el" href="structTriggerEvent.html">TriggerEvent</a> > </td><td class="memItemRight" valign="bottom"><b>m_triggerLibrary</b></td></tr>
<tr class="memdesc:ab41da9cab363af9a310a6a703d6ad30e"><td class="mdescLeft"> </td><td class="mdescRight">Library of trigger events. <br /></td></tr>
<tr class="separator:ab41da9cab363af9a310a6a703d6ad30e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab715ac8bb4639e4761f3d32290dabe4b" id="r_ab715ac8bb4639e4761f3d32290dabe4b"><td class="memItemLeft" align="right" valign="top"><a id="ab715ac8bb4639e4761f3d32290dabe4b" name="ab715ac8bb4639e4761f3d32290dabe4b"></a>
std::map< int, <a class="el" href="structRotationEvent.html">RotationEvent</a> > </td><td class="memItemRight" valign="bottom"><b>m_rotationLibrary</b></td></tr>
<tr class="memdesc:ab715ac8bb4639e4761f3d32290dabe4b"><td class="mdescLeft"> </td><td class="mdescRight">Library of rotation events. <br /></td></tr>
<tr class="separator:ab715ac8bb4639e4761f3d32290dabe4b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1e88cd912790bd83f9ef18715871e3ec" id="r_a1e88cd912790bd83f9ef18715871e3ec"><td class="memItemLeft" align="right" valign="top"><a id="a1e88cd912790bd83f9ef18715871e3ec" name="a1e88cd912790bd83f9ef18715871e3ec"></a>
std::map< int, <a class="el" href="structLabelEvent.html">LabelEvent</a> > </td><td class="memItemRight" valign="bottom"><b>m_labelsetLibrary</b></td></tr>
<tr class="memdesc:a1e88cd912790bd83f9ef18715871e3ec"><td class="mdescLeft"> </td><td class="mdescRight">Library of labelset events. <br /></td></tr>
<tr class="separator:a1e88cd912790bd83f9ef18715871e3ec"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9faf74af7051506a31b347846512efe9" id="r_a9faf74af7051506a31b347846512efe9"><td class="memItemLeft" align="right" valign="top"><a id="a9faf74af7051506a31b347846512efe9" name="a9faf74af7051506a31b347846512efe9"></a>
std::map< int, <a class="el" href="structLabelEvent.html">LabelEvent</a> > </td><td class="memItemRight" valign="bottom"><b>m_labelincLibrary</b></td></tr>
<tr class="memdesc:a9faf74af7051506a31b347846512efe9"><td class="mdescLeft"> </td><td class="mdescRight">Library of labelinc events. <br /></td></tr>
<tr class="separator:a9faf74af7051506a31b347846512efe9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ade5f240f43e7bb9f2aba80ca20d5e234" id="r_ade5f240f43e7bb9f2aba80ca20d5e234"><td class="memItemLeft" align="right" valign="top"><a id="ade5f240f43e7bb9f2aba80ca20d5e234" name="ade5f240f43e7bb9f2aba80ca20d5e234"></a>
std::map< int, <a class="el" href="structSoftDelayEvent.html">SoftDelayEvent</a> > </td><td class="memItemRight" valign="bottom"><b>m_softDelayLibrary</b></td></tr>
<tr class="memdesc:ade5f240f43e7bb9f2aba80ca20d5e234"><td class="mdescLeft"> </td><td class="mdescRight">Library of soft delay events. <br /></td></tr>
<tr class="separator:ade5f240f43e7bb9f2aba80ca20d5e234"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abe989359e19d0001aa6e9029c7875a14" id="r_abe989359e19d0001aa6e9029c7875a14"><td class="memItemLeft" align="right" valign="top"><a id="abe989359e19d0001aa6e9029c7875a14" name="abe989359e19d0001aa6e9029c7875a14"></a>
std::map< int, <a class="el" href="structRfShimmingEvent.html">RfShimmingEvent</a> > </td><td class="memItemRight" valign="bottom"><b>m_rfShimLibrary</b></td></tr>
<tr class="memdesc:abe989359e19d0001aa6e9029c7875a14"><td class="mdescLeft"> </td><td class="mdescRight">Library of RF shimming events. <br /></td></tr>
<tr class="separator:abe989359e19d0001aa6e9029c7875a14"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2027c500921d7aea1e65766bab0dda38" id="r_a2027c500921d7aea1e65766bab0dda38"><td class="memItemLeft" align="right" valign="top"><a id="a2027c500921d7aea1e65766bab0dda38" name="a2027c500921d7aea1e65766bab0dda38"></a>
<a class="el" href="structLabelMap.html">LabelMap</a> </td><td class="memItemRight" valign="bottom"><b>m_labelMap</b></td></tr>
<tr class="memdesc:a2027c500921d7aea1e65766bab0dda38"><td class="mdescLeft"> </td><td class="mdescRight">labelMap is useful for loading labels or damping/visualising values <br /></td></tr>
<tr class="separator:a2027c500921d7aea1e65766bab0dda38"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a90bc1c3e31d7d59c72ee4af72ecabf38" id="r_a90bc1c3e31d7d59c72ee4af72ecabf38"><td class="memItemLeft" align="right" valign="top"><a id="a90bc1c3e31d7d59c72ee4af72ecabf38" name="a90bc1c3e31d7d59c72ee4af72ecabf38"></a>
std::map< int, <a class="el" href="structCompressedShape.html">CompressedShape</a> > </td><td class="memItemRight" valign="bottom"><b>m_shapeLibrary</b></td></tr>
<tr class="memdesc:a90bc1c3e31d7d59c72ee4af72ecabf38"><td class="mdescLeft"> </td><td class="mdescRight">Library of compressed shapes. <br /></td></tr>
<tr class="separator:a90bc1c3e31d7d59c72ee4af72ecabf38"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7ce4c938a5e08f37d0e1c4e814401da8" id="r_a7ce4c938a5e08f37d0e1c4e814401da8"><td class="memItemLeft" align="right" valign="top"><a id="a7ce4c938a5e08f37d0e1c4e814401da8" name="a7ce4c938a5e08f37d0e1c4e814401da8"></a>
double </td><td class="memItemRight" valign="bottom"><b>m_dAdcRasterTime_us</b></td></tr>
<tr class="separator:a7ce4c938a5e08f37d0e1c4e814401da8"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa0cb9b7befc85d4f955e4baaa9d0bb0c" id="r_aa0cb9b7befc85d4f955e4baaa9d0bb0c"><td class="memItemLeft" align="right" valign="top"><a id="aa0cb9b7befc85d4f955e4baaa9d0bb0c" name="aa0cb9b7befc85d4f955e4baaa9d0bb0c"></a>
double </td><td class="memItemRight" valign="bottom"><b>m_dGradientRasterTime_us</b></td></tr>
<tr class="separator:aa0cb9b7befc85d4f955e4baaa9d0bb0c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a13381e392fb6bd7c65e4ae25d68701a9" id="r_a13381e392fb6bd7c65e4ae25d68701a9"><td class="memItemLeft" align="right" valign="top"><a id="a13381e392fb6bd7c65e4ae25d68701a9" name="a13381e392fb6bd7c65e4ae25d68701a9"></a>
double </td><td class="memItemRight" valign="bottom"><b>m_dRadiofrequencyRasterTime_us</b></td></tr>
<tr class="separator:a13381e392fb6bd7c65e4ae25d68701a9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae7eec77b84ee501ce2420b7dea4cd980" id="r_ae7eec77b84ee501ce2420b7dea4cd980"><td class="memItemLeft" align="right" valign="top"><a id="ae7eec77b84ee501ce2420b7dea4cd980" name="ae7eec77b84ee501ce2420b7dea4cd980"></a>
double </td><td class="memItemRight" valign="bottom"><b>m_dBlockDurationRaster_us</b></td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-static-attribs" name="pri-static-attribs"></a>
Static Private Attributes</h2></td></tr>
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static const int </td><td class="memItemRight" valign="bottom"><b>MAX_LINE_SIZE</b> = 256</td></tr>
<tr class="memdesc:a5cbbaffbd472d20a541051d9ecc81034"><td class="mdescLeft"> </td><td class="mdescRight">Maximum length of line. <br /></td></tr>
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static const char </td><td class="memItemRight" valign="bottom"><b>COMMENT_CHAR</b> = '#'</td></tr>
<tr class="memdesc:a91cf110409ee9d51911cbaee7e6dbc12"><td class="mdescLeft"> </td><td class="mdescRight">Character defining the start of a comment line. <br /></td></tr>
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static <a class="el" href="classExternalSequence.html#a17989c2ed1ea693e7be535a5cf6dc1a0">PrintFunPtr</a> </td><td class="memItemRight" valign="bottom"><b>print_fun</b> = &<a class="el" href="classExternalSequence.html#acaf901d2b1d77bd91aa2e8125f40d533">ExternalSequence::defaultPrint</a></td></tr>
<tr class="memdesc:a8daaaf79c552114b8e11f5ab52a64d9a"><td class="mdescLeft"> </td><td class="mdescRight">Pointer to output print function. <br /></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Data representing the entire MR sequence. </p>
<p>This class defines an abstract sequence consisting of arbitrary <em>blocks</em> The basic structure of the sequence consists of three hierarchical levels:</p><ol type="1">
<li><b>Block</b> - list of integer indices pointing to simultaneous events for RF, gradients, ADC.</li>
<li><b>Event</b> - Basic event with one of the following types:<ul>
<li><em>delay</em> - Simple delay</li>
<li><em>RF</em> - contains amplitude, frequency offset, and two indices pointing to basic shape for amp & phase</li>
<li><em>Trapezoid gradient</em> - contains amplitude, ramp up, flat top, ramp down times</li>
<li><em>Arbitrary gradient</em> - contains amplitude and index to basic shape</li>
<li><em>ADC readout</em> - contains number of samples, dwell time, delay, frequency & phase offsets</li>
</ul>
</li>
<li><b>Shape</b> - List of compressed samples defining a basic shape (arbitrary RF or gradient)</li>
</ol>
<dl class="section author"><dt>Author</dt><dd>Kelvin Layton <a href="#" onclick="location.href='mai'+'lto:'+'kel'+'vi'+'n.l'+'ay'+'ton'+'@u'+'nik'+'li'+'nik'+'-f'+'rei'+'bu'+'rg.'+'de'; return false;">kelvi<span class="obfuscator">.nosp@m.</span>n.la<span class="obfuscator">.nosp@m.</span>yton@<span class="obfuscator">.nosp@m.</span>unik<span class="obfuscator">.nosp@m.</span>linik<span class="obfuscator">.nosp@m.</span>-fre<span class="obfuscator">.nosp@m.</span>iburg<span class="obfuscator">.nosp@m.</span>.de</a> </dd></dl>
<dl class="section date"><dt>Date</dt><dd>May 2014 </dd></dl>
</div><h2 class="groupheader">Member Enumeration Documentation</h2>
<a id="a609da6638cf7df9d75075997181c0574" name="a609da6638cf7df9d75075997181c0574"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a609da6638cf7df9d75075997181c0574">◆ </a></span>dl_ret</h2>
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<td class="memname">enum <a class="el" href="classExternalSequence.html#a609da6638cf7df9d75075997181c0574">ExternalSequence::dl_ret</a></td>
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<p>Check the IDs contains references to valid labels in the library Transform order of Labels as in MHDheader. </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">labels</td><td>The labels IDs to check </td></tr>
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</dd>
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<dl class="section return"><dt>Returns</dt><dd>0 if labels/values references are ok </dd>
<dd>
1 if labels references are not recognized </dd>
<dd>
-1 if labels/values references are invalid </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#aeb45dd9fe28f94ae0579a13d23f9396b">◆ </a></span>gl_ret</h2>
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<td class="memname">enum <a class="el" href="classExternalSequence.html#aeb45dd9fe28f94ae0579a13d23f9396b">ExternalSequence::gl_ret</a></td>
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<p>Read a line from the input stream <em>independent of line ending</em>. </p>
<p>Unlike istream::getline(), this function safely handles three different line endings:</p><ul>
<li>Unix/OSX (\n)</li>
<li>Windows (\r\n)</li>
<li>Old Mac (\r)</li>
</ul>
<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">stream</td><td>the input file stream to read from </td></tr>
<tr><td class="paramname">buffer</td><td>the output line buffer (null terminated) </td></tr>
<tr><td class="paramname">MAX_SIZE</td><td>maximum size of the buffer </td></tr>
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</dd>
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<h2 class="memtitle"><span class="permalink"><a href="#acdd21ba66bdedfa09c57b865bd344002">◆ </a></span>load_mode</h2>
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<td class="memname">enum <a class="el" href="classExternalSequence.html#acdd21ba66bdedfa09c57b865bd344002">ExternalSequence::load_mode</a></td>
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<p>Load the sequence from a single stream. </p>
<p>Reads the sequence files into the class members, the sequence is stored in compressed format. The given path refer to either:</p><ol type="1">
<li>A single file with all sequence definitions</li>
<li>One of the three files (blocks.seq, events.seq, shapes.seq)</li>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">path</td><td>location of file or directory </td></tr>
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<h2 class="groupheader">Member Function Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#a7846a4f983f704bba837c620c14a06fa">◆ </a></span>buildFileIndex()</h2>
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<td class="memname">void ExternalSequence::buildFileIndex </td>
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<td class="paramname"><em>stream</em></td><td>)</td>
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<p>Search the file stream for section headers e.g. [RF], [GRAD] etc. </p>
<p>Searches forward in the stream for sections enclosed in square brackets and writes to index </p>
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<h2 class="memtitle"><span class="permalink"><a href="#a66b1bbc2b27281533fa5df466016a83a">◆ </a></span>checkBlockReferences()</h2>
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<td class="memname">bool ExternalSequence::checkBlockReferences </td>
<td>(</td>
<td class="paramtype"><a class="el" href="structEventIDs.html">EventIDs</a> & </td>
<td class="paramname"><em>events</em></td><td>)</td>
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<p>Check the IDs contains references to valid events in the library. </p>
<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">events</td><td>The event IDs to check </td></tr>
</table>
</dd>
</dl>
<dl class="section return"><dt>Returns</dt><dd>true if event references are ok </dd></dl>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="classExternalSequence.html#a65962ae575700ed3eb0b6060f9370be9" title="Check the shapes defining the RF event (if present)">checkRF()</a>, <a class="el" href="classExternalSequence.html#a4a5b59c38694728411d48cebd3ed5d23" title="Check the shapes defining the arbitrary gradient events (if present)">checkGradient()</a> </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#a4a5b59c38694728411d48cebd3ed5d23">◆ </a></span>checkGradient()</h2>
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<td class="memname">void ExternalSequence::checkGradient </td>
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<td class="paramname"><em>block</em></td><td>)</td>
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<p>Check the shapes defining the arbitrary gradient events (if present) </p>
<p>Check the <em>decompressed</em> amplitude of the given block is between [0 1]. </p><dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">block</td><td>The sequence block to check </td></tr>
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<dl class="section see"><dt>See also</dt><dd><a class="el" href="classExternalSequence.html#a65962ae575700ed3eb0b6060f9370be9" title="Check the shapes defining the RF event (if present)">checkRF()</a> </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#a65962ae575700ed3eb0b6060f9370be9">◆ </a></span>checkRF()</h2>
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<td class="memname">void ExternalSequence::checkRF </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classSeqBlock.html">SeqBlock</a> & </td>
<td class="paramname"><em>block</em></td><td>)</td>
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<p>Check the shapes defining the RF event (if present) </p>
<p>Check the <em>decompressed</em> RF amplitude of the given block is between [0 1] and the phase between [0 2pi]. </p><dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">block</td><td>The sequence block to check </td></tr>
</table>
</dd>
</dl>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="classExternalSequence.html#a4a5b59c38694728411d48cebd3ed5d23" title="Check the shapes defining the arbitrary gradient events (if present)">checkGradient()</a> </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#a64a4fad365448d9b767a4ed8b0c589d5">◆ </a></span>decodeBlock()</h2>
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<p>Decode a block by looking up indexed events. </p>
<p>This involves assigning the block's event objects from the libraries as well as decompressing arbitrary RF and gradient shapes.</p>
<dl class="section return"><dt>Returns</dt><dd>true if successful </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#ad289f7878a8db08a9fde911b9dff0e46">◆ </a></span>decodeExtTrapGradInBlock()</h2>
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<td class="paramtype"><a class="el" href="classSeqBlock.html">SeqBlock</a> * </td>
<td class="paramname"><em>block</em></td><td>)</td>
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<p>Decode only the ext trap part of the block. </p>
<p>This involves decompressing extended gradient shapes.</p>
<dl class="section return"><dt>Returns</dt><dd>true if successful </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#a4a4ef972585dd024a8eaf437aa151a19">◆ </a></span>decompressShape()</h2>
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<td class="memname">bool ExternalSequence::decompressShape </td>
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<td class="paramtype"><a class="el" href="structCompressedShape.html">CompressedShape</a> & </td>
<td class="paramname"><em>encoded</em>, </td>
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<td class="paramtype">float * </td>
<td class="paramname"><em>shape</em> </td>
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<td>)</td>
<td></td><td></td>
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<p>Decompress a run-length compressed shape. </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">encoded</td><td>Compressed shape structure </td></tr>
<tr><td class="paramname">shape</td><td>array of floating-point values (must be preallocated!) </td></tr>
</table>
</dd>
</dl>
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<h2 class="memtitle"><span class="permalink"><a href="#aa612706abcabecefc41552cf9ecb9a66">◆ </a></span>GetAllDefinitions()</h2>
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<p>Return a vector of all definitions (keys) </p>
<p>Return the list of user-specified definitions through the [DEFINITIONS] section. If no definitions present, an empty vector is returned.</p>
<dl class="section return"><dt>Returns</dt><dd>a list of strings (or empty vector) </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#ab9f9070c213b6e35850c4f7352cce32f">◆ </a></span>GetBlock()</h2>
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<td class="memname"><a class="el" href="classSeqBlock.html">SeqBlock</a> * ExternalSequence::GetBlock </td>
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<td class="paramtype">int </td>
<td class="paramname"><em>blockIndex</em></td><td>)</td>
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<p>Construct a sequence block from the library events. </p>
<p>Events are loaded from the library. However, arbitrary waveforms are not decoded until <a class="el" href="classExternalSequence.html#a64a4fad365448d9b767a4ed8b0c589d5" title="Decode a block by looking up indexed events.">decodeBlock()</a> is called.</p>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="classExternalSequence.html#a64a4fad365448d9b767a4ed8b0c589d5" title="Decode a block by looking up indexed events.">decodeBlock()</a> </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#a4f8ec2a770a0a593214dfdd7212311db">◆ </a></span>GetDefinition()</h2>
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<td class="paramtype">std::string </td>
<td class="paramname"><em>key</em></td><td>)</td>
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<p>Lookup the custom definition. </p>
<p>Search the list of user-specified definitions through the [DEFINITIONS] section. If the definition key is not found, an empty vector is returned.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">key</td><td>the definition name </td></tr>
</table>
</dd>
</dl>
<dl class="section return"><dt>Returns</dt><dd>a list of values (or empty vector) </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#a1aa6f4814b0f262b07023cd65efec31f">◆ </a></span>GetDefinitionStr()</h2>
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<td class="memname">std::string ExternalSequence::GetDefinitionStr </td>
<td>(</td>
<td class="paramtype">std::string </td>
<td class="paramname"><em>key</em></td><td>)</td>
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<p>Lookup the custom definition. </p>
<p>Search the list of user-specified definitions through the [DEFINITIONS] section. If the definition key is not found, an empty string is returned.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">key</td><td>the definition name </td></tr>
</table>
</dd>