Issues

• Memory error: DIAMOND_analysis_counter.py

  bugenhancementhelp wantedPython
  transcript/samsa2#87 · Filter by author AlexGaithuma opened on Jan 29, 2025
  2

• Error while running DIAMOND_subsystems_analysis_counter.py

  bugPython
  transcript/samsa2#86 · Filter by author adrianestrada1405 opened on Jul 26, 2024
  10

• error standardized_DIAMOND_analysis_counter.py

  bugdatabase
  transcript/samsa2#77 · Filter by author arianlundberg opened on Dec 18, 2022
  4

  

• issue with get_normalized_count_table.R

  transcript/samsa2#75 · Filter by author Malabady opened on Oct 16, 2022

• Error in DIAMOND_analysis_counter.py

  transcript/samsa2#74 · Filter by author McKSal opened on Aug 4, 2022
  1

• Issue with colors in 'make_combined_graphs.R

  R
  transcript/samsa2#72 · Filter by author mbeckm01 opened on Apr 28, 2022
  1

  

• Combine step 5 outputs from different samples

  enhancementhelp wantedquestion
  transcript/samsa2#71 · Filter by author Vincev454 opened on Apr 1, 2022
  1

• Error with R script: DESeq_stats.

  transcript/samsa2#70 · Filter by author pauvic opened on Feb 25, 2022
  11

• Error running DIAMOND_subsystems_analysis_counter.py

  databasePython
  transcript/samsa2#65 · Filter by author eKariuki-sleepy opened on Jul 14, 2021
  9

  

• Header parsing using blast format 6 with salltitles

  transcript/samsa2#60 · Filter by author jjkoehorst opened on Mar 24, 2021
  1

• Error in DIAMOND_analysis_counter.py

  Python
  transcript/samsa2#57 · Filter by author mweberr opened on Oct 16, 2020
  3

• How to deal with the same proteins with slightly different names from the RefSeq_bac database?

  databaseenhancementhelp wanted
  transcript/samsa2#52 · Filter by author monaparizadeh opened on Jul 13, 2020
  2

• SAMS2 bash script for 16S rRNA pipeline

  enhancement
  transcript/samsa2#44 · Filter by author Shicheng-Guo opened on Feb 13, 2020
  1

• Parsing of genus/species names

  enhancementPython
  transcript/samsa2#37 · Filter by author mattjmeier opened on Oct 7, 2019
  1

• SAMSA2 wrapper for Galaxy

  enhancementhelp wanted
  transcript/samsa2#36 · Filter by author mushalallam opened on Aug 16, 2019
  1

• Including locusTags alongwith gene names

  enhancement
  transcript/samsa2#34 · Filter by author microsud opened on May 4, 2019

• Bad operand protections - DIAMOND_specific_organism_retriever.py can be overwritten when calling it

  transcript/samsa2#27 · Filter by author jfvorwald opened on Mar 6, 2019
  2

• Docker/Singularity image?

  enhancementhelp wanted
  transcript/samsa2#23 · Filter by author onertipaday opened on Nov 6, 2018
  5

  

• Update make_combined_graphs.R script to also work with Subsystems input

  enhancement
  transcript/samsa2#18 · Filter by author transcript opened on Sep 13, 2018
  

• Normalize based on gene length?

  enhancement
  transcript/samsa2#17 · Filter by author transcript opened on Aug 31, 2018
  2