Hi Michael @lawremi, Hervé @hpages,
A (recent?) change to IRanges IntegerList returns some unexpected results.
In base R, the min(integer()) returns Inf.
When taking the min or max of IRanges::IntegerList, you get the max integer
value in R (see below).
Should this match what base R returns?
-M
library(IRanges)
#> Loading required package: BiocGenerics
#> Loading required package: parallel
#>
#> Attaching package: 'BiocGenerics'
#> The following objects are masked from 'package:parallel':
#>
#> clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
#> clusterExport, clusterMap, parApply, parCapply, parLapply,
#> parLapplyLB, parRapply, parSapply, parSapplyLB
#> The following objects are masked from 'package:stats':
#>
#> IQR, mad, sd, var, xtabs
#> The following objects are masked from 'package:base':
#>
#> anyDuplicated, append, as.data.frame, basename, cbind,
#> colMeans, colnames, colSums, dirname, do.call, duplicated,
#> eval, evalq, Filter, Find, get, grep, grepl, intersect,
#> is.unsorted, lapply, lengths, Map, mapply, match, mget, order,
#> paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind,
#> Reduce, rowMeans, rownames, rowSums, sapply, setdiff, sort,
#> table, tapply, union, unique, unsplit, which, which.max,
#> which.min
#> Loading required package: S4Vectors
#> Loading required package: stats4
#>
#> Attaching package: 'S4Vectors'
#> The following object is masked from 'package:base':
#>
#> expand.grid
il <- IntegerList(A = 1:3, B = integer())
max(il)
#> A B
#> 3 -2147483647
min(il)
#> A B
#> 1 2147483647
Created on 2018-08-08 by the reprex package (v0.2.0).
Session info
devtools::session_info()
#> Session info -------------------------------------------------------------
#> setting value
#> version R version 3.5.1 Patched (2018-07-30 r75013)
#> system x86_64, linux-gnu
#> ui X11
#> language (EN)
#> collate en_US.UTF-8
#> tz America/New_York
#> date 2018-08-08
#> Packages -----------------------------------------------------------------
#> package * version date source
#> backports 1.1.2 2017-12-13 CRAN (R 3.5.0)
#> base * 3.5.0 2018-05-01 local
#> BiocGenerics * 0.27.1 2018-06-17 Bioconductor
#> compiler 3.5.0 2018-05-01 local
#> datasets * 3.5.0 2018-05-01 local
#> devtools 1.13.6 2018-06-27 cran (@1.13.6)
#> digest 0.6.15 2018-01-28 CRAN (R 3.5.0)
#> evaluate 0.11 2018-07-17 CRAN (R 3.5.1)
#> graphics * 3.5.0 2018-05-01 local
#> grDevices * 3.5.0 2018-05-01 local
#> htmltools 0.3.6 2017-04-28 CRAN (R 3.5.0)
#> IRanges * 2.15.16 2018-07-18 Bioconductor
#> knitr 1.20 2018-02-20 CRAN (R 3.5.0)
#> magrittr 1.5 2014-11-22 CRAN (R 3.5.0)
#> memoise 1.1.0 2017-04-21 CRAN (R 3.5.0)
#> methods * 3.5.0 2018-05-01 local
#> parallel * 3.5.0 2018-05-01 local
#> Rcpp 0.12.18 2018-07-23 CRAN (R 3.5.1)
#> rmarkdown 1.10 2018-06-11 CRAN (R 3.5.0)
#> rprojroot 1.3-2 2018-01-03 CRAN (R 3.5.0)
#> S4Vectors * 0.19.19 2018-07-18 Bioconductor
#> stats * 3.5.0 2018-05-01 local
#> stats4 * 3.5.0 2018-05-01 local
#> stringi 1.2.4 2018-07-20 CRAN (R 3.5.1)
#> stringr 1.3.1 2018-05-10 CRAN (R 3.5.0)
#> tools 3.5.0 2018-05-01 local
#> utils * 3.5.0 2018-05-01 local
#> withr 2.1.2 2018-03-15 CRAN (R 3.5.0)
#> yaml 2.2.0 2018-07-25 CRAN (R 3.5.1)
Hi Michael @lawremi, Hervé @hpages,
A (recent?) change to
IRangesIntegerListreturns some unexpected results.In base R, the
min(integer())returnsInf.When taking the
minormaxofIRanges::IntegerList, you get the max integervalue in R (see below).
Should this match what base R returns?
-M
Created on 2018-08-08 by the reprex package (v0.2.0).
Session info