Marshmallow schema

[jkalayan]

Summary

Invenio schema generation from LinkML schema

Changes

• Included a script that auto-generates a schema that can be used in Invenio to add biosimdb metadata into an uploaded record metadata.
• Include generation of the marshmallow schema to the artifact generation workflow.

Impact

• The biosim-schema metadata will now be linked to published records submitted to BioSimDB data-collections. Allow for this metadata to be included in further indexing

[coveralls]

Coverage Report for CI Build 35140416851

Coverage increased (+2.2%) to 86.202%

Details

• Coverage increased (+2.2%) from the base build.
• Patch coverage: 11 uncovered changes across 2 files (145 of 156 lines covered, 92.95%).
• No coverage regressions found.

Uncovered Changes

File	Changed	Covered	%
biosim_schema/fieldextraction/generate_marshmallow.py	145	139	95.86%
biosim_schema/utils/generate_artifacts.py	11	6	54.55%

Coverage Regressions

No coverage regressions found.

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Coverage Stats

Relevant Lines:	645
Covered Lines:	556
Line Coverage:	86.2%
Coverage Strength:	7.76 hits per line

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💛 - Coveralls