Dependency Dashboard

[renovate]

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
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Abandoned Dependencies

The following dependencies have not received updates for an extended period and may be unmaintained.

Note

Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.

View abandoned dependencies (6)

Datasource	Package	Last Updated
github-actions	hmarr/auto-approve-action	2024-02-03
poetry	pytest-mock	2025-09-16
poetry	pytest-sugar	2025-08-23
poetry	sphinx-copybutton	2023-04-14
poetry	sphinxcontrib-contentui	2020-04-18
poetry	sphinxcontrib-details-directive	2019-09-22

Awaiting Schedule

The following updates are awaiting their schedule. To get an update now, click on a checkbox below.

• Lock file maintenance

Pending Status Checks

The following updates await pending status checks. To force their creation now, click on a checkbox below.

• Update dependency ubuntu to v26

Detected Dependencies

docker-compose (1)

docker/docker-compose.yml

dockerfile (1)

docker/Dockerfile (3)

• ubuntu 26.04@sha256:da6fc2be547864451aa253836dd926da33623312df4a9a243e35dc877c378a78
• ubuntu 26.04@sha256:da6fc2be547864451aa253836dd926da33623312df4a9a243e35dc877c378a78
• ubuntu 26.04@sha256:da6fc2be547864451aa253836dd926da33623312df4a9a243e35dc877c378a78

github-actions (4)

.github/workflows/biosimdb_interface_project-ci.yaml (12)

• actions/checkout v7.0.1@3d3c42e5aac5ba805825da76410c181273ba90b1
• actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
• coverallsapp/github-action v2.3.8@8d6379e14d29928660c4ba802d8e85393440b329
• coverallsapp/github-action v2.3.8@8d6379e14d29928660c4ba802d8e85393440b329
• actions/checkout v7.0.1@3d3c42e5aac5ba805825da76410c181273ba90b1
• actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
• actions/checkout v7.0.1@3d3c42e5aac5ba805825da76410c181273ba90b1
• actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
• ubuntu 24.04 → [Updates: 26.04]
• python 3.14.7
• ubuntu 24.04 → [Updates: 26.04]
• python 3.14.7

.github/workflows/docker-publish.yaml (7)

• actions/checkout v7.0.1@3d3c42e5aac5ba805825da76410c181273ba90b1
• docker/setup-qemu-action v4.4.0@99012661954931238ded8c8b007157a8430204e1
• docker/setup-buildx-action v4.4.1@f87e5991a6d7451dcb8d9637bfbc97413f497069
• docker/login-action v4.6.0@dbcb813823bdd20940b903addbd779551569679f
• docker/metadata-action v6.2.0@dc802804100637a589fabce1cb79ff13a1411302
• docker/build-push-action v7.4.0@c3c9e263c25d99ce0380d002d59b67737d91b0dc
• ubuntu 24.04 → [Updates: 26.04]

.github/workflows/release.yaml (13)

• actions/checkout v7.0.1@3d3c42e5aac5ba805825da76410c181273ba90b1
• actions/setup-python v7.0.0@5fda3b95a4ea91299a34e894583c3862153e4b97
• actions/checkout v7.0.1@3d3c42e5aac5ba805825da76410c181273ba90b1
• actions/checkout v7.0.1@3d3c42e5aac5ba805825da76410c181273ba90b1
• peter-evans/create-pull-request v8.1.1@5f6978faf089d4d20b00c7766989d076bb2fc7f1
• hmarr/auto-approve-action v4.0.0@f0939ea97e9205ef24d872e76833fa908a770363
• actions/checkout v7.0.1@3d3c42e5aac5ba805825da76410c181273ba90b1
• softprops/action-gh-release v3.0.3@efb35369e0ad2afab669f228072c1b0d510eae64
• ubuntu 24.04 → [Updates: 26.04]
• python 3.14.7
• ubuntu 24.04 → [Updates: 26.04]
• ubuntu 24.04 → [Updates: 26.04]
• ubuntu 24.04 → [Updates: 26.04]

.github/workflows/update-copyright-years-in-license-file.yaml (2)

• actions/checkout v7.0.1@3d3c42e5aac5ba805825da76410c181273ba90b1
• FantasticFiasco/action-update-license-year v3.0.4@f180e962fa988db222d8f03ef4636750312d1b3d

poetry (1)

pyproject.toml (22)

• Flask ==3.1.3
• Werkzeug ==3.1.8
• data-collections-api ==0.1.0
• MDAnalysis ==2.10.0
• python-dotenv ==1.2.3
• gunicorn >=26,<27
• biosim-extractor >=0.0.2,<1.0
• pytest >=9.0,<10.0
• pytest-cov >=7.0,<8.0
• pytest-sugar >=1.1,<2.0
• pytest-mock ==3.15.1
• ruff >=0.14.8
• pre-commit >=4.5,<5.0
• pylint >=4.0,<5.0
• sphinx >=9,<10
• nbsphinx >=0.9,<1.0
• sphinx-rtd-theme >=3,<3.2
• sphinx-copybutton >=0.5,<1.0
• sphinxcontrib-contentui >=0.2,<1.0
• sphinxcontrib-details-directive >=0.1,<1.0
• furo >=2025.0,<2026.0
• markupsafe >=3.0,<4.0

regex (1)

docker/Dockerfile (2)

• setuptools 84.0.0
• gunicorn 26.2.0

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