Environment Setup

Install Mamba to manage environments.

Setup environments:

mamba create -f nemo.yaml
mamba create -f nemo_cpu.yaml
mamba create -f prep.yaml

Reference

Kevin C Rockenbach, Silvia F Zanini, Richard J Morris, Rachel Wells, Agnieszka A Golicz. A deep learning model recapitulates position specific effects of plant regulatory sequences and suggests genes under complex regulation
bioRxiv. (https://doi.org/10.1101/2025.08.30.673246)