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Imageomics
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TreeOfLife-toolbox
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New tool for converting Parquet-formatted dataset to HDF5(WebP)+Parquet(metadata).
- #39
#39
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thompsonmj
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Imageomics/TreeOfLife-toolbox:main
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parquet2hdf5
Imageomics/TreeOfLife-toolbox:parquet2hdf5
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New tool for converting Parquet-formatted dataset to HDF5(WebP)+Parquet(metadata).
#39
thompsonmj
wants to merge 16 commits into
main
Imageomics/TreeOfLife-toolbox:main
from
parquet2hdf5
Imageomics/TreeOfLife-toolbox:parquet2hdf5
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Commits
Commits on Nov 4, 2025
Include new h5py dependency
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87045cd
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Add neew tool for converting TOL Parquet image dataset to hybrid HDF5(WebP)+Parquet(metadata)format
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4be4e3b
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Start HDF5 docs by providing hybrid format data access instructions
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259df60
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Commits on Nov 5, 2025
Incorporate UUID validation/fix into HDF5 conversion
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69f5dcf
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Remove redundant WebP quality since already specifying lossless
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57d8173
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Register HDF5 conversion tool
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e1a6e3d
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Commits on Nov 26, 2025
Implement post-conversion copy/validate scripts
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0f79a24
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Make source/dest paths generalized
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Commits on Dec 1, 2025
Script to delete interim artifacts for HDF5 conversion
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Commits on Dec 2, 2025
Add function to ensure new format present in destination
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Commits on Dec 4, 2025
Make a sub-group-batch version of the cleanup script
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Fix dry-run log to show batch in name
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42d37e0
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Commits on Dec 9, 2025
Script to remove empty source data files
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82ec37b
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Also clean up resulting empty server directories
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Log directory prunning plan
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833bb75
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Add conversion and helper dependencies
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8c95f63
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