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johnkecops/README.md

Arli Aditya Parikesit

Dr. rer. nat. | Faculty member of Bioinformatics streaming and Visiting Professor at School of Busisness and Management, i3L University, Jakarta

Bioinformatician working on immunoinformatics, in silico drug design, in silico transcriptomics, and protein domain annotation. Former Vice-Rector of Research and Industrial Collaboration at i3L University, Jakarta, Indonesia. Professional Scientific Journal and Book editor.


About me

  • Bachelor's and Master's in Chemistry (Biotechnology stream), Universitas Indonesia
  • Dr. rer. nat. in Bioinformatics, Bioinformatics Group, University of Leipzig, Germany (DAAD fellow). Doctoral work: modern protein domain annotation across the three domains of life
  • Current interests: structural bioinformatics, transcriptomics and proteomics, bioalgorithms, immunoinformatics, and the application of AI to life-science problems
  • Editorial work: editorial board member at Springer-Nature journals (BMC Bioinformatics, Scientific Reports, Scientific Review, Discover Life, and Discover Bacteria); academic editor of several IntechOpen volumes on CRISPR, antiviral strategies, COVID-19 drug development, and omics-driven drug design; editor of Indonesian Journal of Biotechnology; academic editor of PLOS Computational Biology

Award

  1. Editor of Distinction Awards: Author Service Award 2026 from BMC Bioinformatics Journal
award-2026

Tools I work with

Python · Streamlit · Biopython · RDKit · molecular docking and MD (AutoDock Vina, OpenMM) · RNA structure prediction (ViennaRNA) · domain annotation (InterPro, Pfam) · TCGA / NCBI / UniProt / PDB data mining

More on Publications and profiles


Open to collaboration on computational biology, immunoinformatics, and in silico drug design projects, and to student research supervision at i3L University.

Pinned Loading

  1. protein-domain protein-domain Public

    This is script repository on my project about protein domain annotation

    Python

  2. Epigenetics Epigenetics Public

    Epigenetics Pipeline from TCGA Database

    Python 1

  3. Alzheimer_Epigenetics Alzheimer_Epigenetics Public

    Alzheimer Epigenetics Database Mining

    Python 1

  4. Human_Excrement_Monitoring Human_Excrement_Monitoring Public

    This is a streamlit-based app for Human Excrement Monitoring

    Python

  5. Dementia Dementia Public

    The quiz was created by using tkinter module and its built-in functions in Python programming language. This quiz provides a simple way for people to regularly train their cognitive skill, so the r…

    Python

  6. Plasmodium_Protein_Domain_Annotation Plasmodium_Protein_Domain_Annotation Public

    Plasmodium Protein Domain Annotation Pipeline with Streamlit

    Python