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Check warning on line 453 in src/yacht/hypothesis_recovery_src.py
sonarqubecloud / SonarCloud Code Analysis
Remove the unused function parameter "ksize".
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaepJOIj1eNC5ES9m&open=AZzoaepJOIj1eNC5ES9m&pullRequest=141
Check warning on line 883 in src/yacht/utils.py
sonarqubecloud / SonarCloud Code Analysis
Remove the unused local variable "zero_count".
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaekAOIj1eNC5ES9j&open=AZzoaekAOIj1eNC5ES9j&pullRequest=141
Check warning on line 243 in src/yacht/hypothesis_recovery_src.py
sonarqubecloud / SonarCloud Code Analysis
Remove the unused function parameter "batch_size".
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZ-BLusLw6Mj10ISrb5Z&open=AZ-BLusLw6Mj10ISrb5Z&pullRequest=141
Check warning on line 32 in src/yacht/cov_calc.py
sonarqubecloud / SonarCloud Code Analysis
Remove the unused local variable "gn_kmers_keys".
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaepTOIj1eNC5ES9s&open=AZzoaepTOIj1eNC5ES9s&pullRequest=141
Check warning on line 489 in src/yacht/hypothesis_recovery_src.py
sonarqubecloud / SonarCloud Code Analysis
Remove this commented out code.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZ_8skkGGNHB1rM1fC-e&open=AZ_8skkGGNHB1rM1fC-e&pullRequest=141
Check warning on line 243 in src/yacht/utils.py
sonarqubecloud / SonarCloud Code Analysis
Replace this set constructor call by a set literal.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaekAOIj1eNC5ES9c&open=AZzoaekAOIj1eNC5ES9c&pullRequest=141
Check failure on line 814 in src/yacht/utils.py
sonarqubecloud / SonarCloud Code Analysis
Refactor this function to reduce its Cognitive Complexity from 18 to the 15 allowed.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaekAOIj1eNC5ES9g&open=AZzoaekAOIj1eNC5ES9g&pullRequest=141
Check warning on line 29 in src/yacht/cov_calc.py
sonarqubecloud / SonarCloud Code Analysis
Rename this local variable "myArgs" to match the regular expression ^[_a-z][a-z0-9_]*$.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaepTOIj1eNC5ES9q&open=AZzoaepTOIj1eNC5ES9q&pullRequest=141
Check failure on line 24 in src/yacht/cov_calc.py
sonarqubecloud / SonarCloud Code Analysis
Refactor this function to reduce its Cognitive Complexity from 42 to the 15 allowed.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZ3alOPYPSDrC3loz1Aj&open=AZ3alOPYPSDrC3loz1Aj&pullRequest=141
Check warning on line 814 in src/yacht/utils.py
sonarqubecloud / SonarCloud Code Analysis
Remove the unused function parameter "k".
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaekAOIj1eNC5ES9f&open=AZzoaekAOIj1eNC5ES9f&pullRequest=141
Check failure on line 781 in src/yacht/hypothesis_recovery_src.py
sonarqubecloud / SonarCloud Code Analysis
Refactor this function to reduce its Cognitive Complexity from 29 to the 15 allowed.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaepJOIj1eNC5ES9p&open=AZzoaepJOIj1eNC5ES9p&pullRequest=141
Check warning on line 1022 in src/yacht/hypothesis_recovery_src.py
sonarqubecloud / SonarCloud Code Analysis
Add replacement fields or use a normal string instead of an f-string.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZ1zLScK87T5dO55Wqj4&open=AZ1zLScK87T5dO55Wqj4&pullRequest=141
Check failure on line 602 in src/yacht/hypothesis_recovery_src.py
sonarqubecloud / SonarCloud Code Analysis
Refactor this function to reduce its Cognitive Complexity from 24 to the 15 allowed.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaepJOIj1eNC5ES9o&open=AZzoaepJOIj1eNC5ES9o&pullRequest=141
Check warning on line 810 in src/yacht/utils.py
sonarqubecloud / SonarCloud Code Analysis
Remove the unused local variable "r".
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaekAOIj1eNC5ES9e&open=AZzoaekAOIj1eNC5ES9e&pullRequest=141
Check warning on line 796 in src/yacht/hypothesis_recovery_src.py
sonarqubecloud / SonarCloud Code Analysis
Function "hypothesis_recovery" has 15 parameters, which is greater than the 13 authorized.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZ3alONfPSDrC3loz1Ai&open=AZ3alONfPSDrC3loz1Ai&pullRequest=141
Check warning on line 862 in src/yacht/utils.py
sonarqubecloud / SonarCloud Code Analysis
Remove the unused function parameter "lam_mean".
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaekAOIj1eNC5ES9i&open=AZzoaekAOIj1eNC5ES9i&pullRequest=141
Check warning on line 478 in src/yacht/hypothesis_recovery_src.py
sonarqubecloud / SonarCloud Code Analysis
Remove this commented out code.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZ_8skkGGNHB1rM1fC-d&open=AZ_8skkGGNHB1rM1fC-d&pullRequest=141
Check warning on line 778 in src/yacht/utils.py
sonarqubecloud / SonarCloud Code Analysis
Remove the unused local variable "nonzero".
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaekAOIj1eNC5ES9d&open=AZzoaekAOIj1eNC5ES9d&pullRequest=141
Check warning on line 879 in src/yacht/hypothesis_recovery_src.py
sonarqubecloud / SonarCloud Code Analysis
Remove this assignment to local variable 'fallback_coverage'; the value is never used.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZ3alONfPSDrC3loz1Ah&open=AZ3alONfPSDrC3loz1Ah&pullRequest=141
Check warning on line 408 in src/yacht/hypothesis_recovery_src.py
sonarqubecloud / SonarCloud Code Analysis
Remove this commented out code.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZ_8skkGGNHB1rM1fC-b&open=AZ_8skkGGNHB1rM1fC-b&pullRequest=141
Check failure on line 235 in src/yacht/hypothesis_recovery_src.py
sonarqubecloud / SonarCloud Code Analysis
Refactor this function to reduce its Cognitive Complexity from 26 to the 15 allowed.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaepJOIj1eNC5ES9k&open=AZzoaepJOIj1eNC5ES9k&pullRequest=141
Check warning on line 34 in src/yacht/cov_calc.py
sonarqubecloud / SonarCloud Code Analysis
Remove the unused local variable "gn_dict".
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZzoaepTOIj1eNC5ES9r&open=AZzoaepTOIj1eNC5ES9r&pullRequest=141
Check warning on line 389 in src/yacht/hypothesis_recovery_src.py
sonarqubecloud / SonarCloud Code Analysis
Remove this commented out code.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZ_8skkGGNHB1rM1fC-a&open=AZ_8skkGGNHB1rM1fC-a&pullRequest=141
Check failure on line 84 in src/yacht/standardize_yacht_output.py
sonarqubecloud / SonarCloud Code Analysis
Refactor this function to reduce its Cognitive Complexity from 17 to the 15 allowed.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZ2Rpon2SIhL8hq9m3yi&open=AZ2Rpon2SIhL8hq9m3yi&pullRequest=141
Check warning on line 414 in src/yacht/hypothesis_recovery_src.py
sonarqubecloud / SonarCloud Code Analysis
Remove this commented out code.
See more on https://sonarcloud.io/project/issues?id=KoslickiLab_YACHT&issues=AZ_8skkGGNHB1rM1fC-c&open=AZ_8skkGGNHB1rM1fC-c&pullRequest=141