Miller Lab @ UVA

This repo contains code for automating processing of scRNA libraries and other useful functions

This is a standalone interactive Shiny tool to analyze and explore single-cell RNA-seq data from human coronary artery.

This repo contains the dockerfile(s) to accurately reproduce the environment to analyze plaqview data and develop the plaqview shiny app

This repo contains scripts used for the Human Atherosclerosis scRNA-seq meta-analysis project.

This repo has code to build a small iSEE app for docker image testing purposes.

This repository contains scripts used for fine-mapping GWAS locus using eQTL prioritization methods, including Summary-based Mendelian Randomization (SMR) and coloc based colocalization.

This is just the directory and scripts for processing the raw recruited datasets

Central Repo for the PlaqView single-cell ATAC-seq portal.

Comprehensive single-cell RNA seq analysis workflow: automatic cell labeling to drug discovery and repurposing. Work from UVA CPHG Miller Lab.