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adding vs module - #1

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NathanielF wants to merge 1088 commits into

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vs_module

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Commits on Jun 29, 2025
- clean up PyMCModel.predict + PyMCModel._data_setter
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- remove a numerical index in favour of a named dimension
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- make code comment more specific
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- consolidate tests, fix doctest
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- point to the conftest file in make command
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- Merge pull request #493 from pymc-labs/code-cov
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- Merge branch 'main' into mock-sample
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- Merge branch 'main' into multi-cell-geolift
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Commits on Jun 30, 2025
- set fixture scope to module
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- [pre-commit.ci] pre-commit autoupdate
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- towards a more unified scoring (r2) approach
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- more unification with score (r2) in terms of unified naming: unit_{n}_r2
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- refactor PyMCModel.score
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- the grand simplification
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- tweak docstring
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Commits on Jul 3, 2025
- Merge pull request #497 from pymc-labs/pre-commit-ci-update-config
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Commits on Jul 5, 2025
- Merge pull request #489 from williambdean/mock-sample
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- Merge branch 'main' into multi-cell-geolift
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- update class diagram
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- re-run relevant notebooks
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Commits on Jul 6, 2025
- add new data set
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- adding latent prop_score notebook
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Commits on Jul 7, 2025
- using ps in outcome model
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- update interrupted time series notebook
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- [pre-commit.ci] pre-commit autoupdate
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Commits on Jul 8, 2025
- adding spline function on the propensity score
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- adding centred and non-centred options
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- tidying
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Commits on Jul 9, 2025
- Merge pull request #502 from pymc-labs/pre-commit-ci-update-config
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- proving feedback issue and corrective
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- update with write up
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- tidying spellings
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Commits on Jul 10, 2025
- improving the simulation study
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- full run through
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Commits on Jul 11, 2025
- adding plots of prop score distributions
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- adding some tests and a conclusion
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- adding video resource and notebook to how-to
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- adding some more test coverage
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- fixing spelling error
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Commits on Jul 12, 2025
- adjusting for some Juan's comments
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- fixing typos
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- adding datasets
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- remove beta_ps interaction
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Commits on Jul 13, 2025
- fix observed keyword for student liklihood
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- demonstrate the usefulness of spline component
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- update colour scheme on graphs
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Commits on Jul 14, 2025
- [pre-commit.ci] pre-commit autoupdate
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Commits on Jul 15, 2025
- Merge pull request #503 from pymc-labs/pre-commit-ci-update-config
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Commits on Jul 16, 2025
- less confusing variable names
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- improve type hints
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- combined=True in az.plot_forest in brexit synthetic control example
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- Merge branch 'main' into its-notebook-clarification
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- Merge pull request #494 from pymc-labs/multi-cell-geolift
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- Merge branch 'main' into its-notebook-clarification
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- fix typo
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Commits on Jul 17, 2025
- flesh out more detail about causal impact in the interrupted time series setting
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Commits on Jul 18, 2025
- streamline the text and fix some grammatical issues
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- Merge pull request #504 from pymc-labs/its-causal-impact-details
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- Merge branch 'main' into its-notebook-clarification
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- manually resolve notebook conflicts 🤷🏻‍♂️
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- elaborate on the mean causal impact, including adding an equation
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- update with ben's comments
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- add new data set
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- Merge branch 'main' into propensity_score_latent
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Commits on Jul 19, 2025
- add reference
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- add simple regression to highlight effect of prop score,
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- fix issue with N not being used
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- Add explanation about np.ones
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- "business decisions" -> "decisions"
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- Merge pull request #501 from pymc-labs/its-notebook-clarification
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- allow priors on propensity score parameters
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- Handle integer treated variable in RegressionDiscontinuity
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- remove redundant alpha parameter in model class
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- add winsorisation option and better priors for nhefs
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Commits on Jul 21, 2025
- Update UML Diagrams
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- Merge pull request #508 from pymc-labs/update-uml-diagrams
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Commits on Jul 24, 2025
- version bump
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- Merge pull request #510 from pymc-labs/version-bump-0.5.0
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- [pre-commit.ci] pre-commit autoupdate (#509)
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Commits on Jul 28, 2025
- [pre-commit.ci] pre-commit autoupdate
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- Adding BSTS changes and notebook updates
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- Resolve merge conflicts: fix __init__.py imports and remove doctest-modules from pytest config
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- Merge main into cetagostini/adding_bsts_to_causalpy
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- Add notebook copy file
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- Remove leftover notebook copy file
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- Update notebook execution outputs
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- Making its work better
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- Delete the dot model.
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Commits on Jul 29, 2025
Commits on Aug 1, 2025
- update quasi dag for pre/post NEGD
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Commits on Aug 2, 2025
- Multiple refinements
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- remove redundant stuff
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Commits on Aug 4, 2025
- callout box for why tau is the ATE
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- correct the discussion about backdoor path 3 and U_1
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- add the do operator to make the intervention more clear
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- [pre-commit.ci] pre-commit autoupdate
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Commits on Aug 5, 2025
- update DAG formatting + sentence on conditional ignorability
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- fix typo
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- Merge pull request #517 from pymc-labs/ancova
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- Merge pull request #518 from pymc-labs/pre-commit-ci-update-config
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Commits on Aug 11, 2025
- Requested changes
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- moving to drafts
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- Small push
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- quick changes
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- Changing
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- Correcting typo
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Commits on Aug 25, 2025
- [pre-commit.ci] pre-commit autoupdate
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Commits on Aug 28, 2025
- Merge pull request #520 from pymc-labs/pre-commit-ci-update-config
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- Update UML Diagrams
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Commits on Aug 29, 2025
- Merge pull request #523 from pymc-labs/update-uml-diagrams
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- Improve clarity of TWFE explanation (#522)
  
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Commits on Sep 27, 2025
- [pre-commit.ci] pre-commit autoupdate (#525)
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Commits on Sep 29, 2025
- remove spaces from previous code-block (#527)
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- drop python 3.10, add 3.13 (#529)
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Commits on Oct 3, 2025
- Support for custom priors via Prior class (#488)
  
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- [pre-commit.ci] pre-commit autoupdate (#530)
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- Merge branch 'main' into cetagostini/adding_bsts_to_causalpy
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- Changes by Nathaniel
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Commits on Oct 7, 2025
- [pre-commit.ci] pre-commit autoupdate (#531)
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Commits on Oct 11, 2025
- attempt to get intersphinx mapping working with pymc-extras
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- run `make uml`
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Commits on Oct 14, 2025
- [pre-commit.ci] pre-commit autoupdate (#535)
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Commits on Oct 21, 2025
- [pre-commit.ci] pre-commit autoupdate (#536)
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Commits on Oct 23, 2025
- adding knowledgebase on SCM
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- tidying spell check
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- improve binary modelling with BART
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Commits on Oct 24, 2025
- update with CATE RUN
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- add visual of probabilistic causal inference
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Commits on Oct 25, 2025
- update cate and po section
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- fixing typos
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- add PO diagram
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Commits on Oct 26, 2025
- added empirical example
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- fix typo
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Commits on Oct 27, 2025
- Fix calculation/plotting mistake to now focus on posterior expectation (#539)
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- Fix bug in `SyntheticControl.get_plot_data` (#540)
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- Don't change matplotlib style on import of causalpy + misc dev fixes (#538)
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- add fish tank analogy
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- Merge branch 'main' into cate_example
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- fix typo
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Commits on Oct 28, 2025
- tidying text
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- further tidying
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- [pre-commit.ci] pre-commit autoupdate (#541)
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- added conclusion
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- Refactored scikit-learn flavour of `DifferenceInDifferences` and allowed custom column names for `post_treatment` variable. (#515)
  
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- More sign posting
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Commits on Oct 29, 2025
- update references and write up
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- add CTA to the end.
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Commits on Oct 30, 2025
- add bayes factor plot
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- hide table inputs for param comparison
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- tightening the introduction
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- feat(Makefile): Add self-documenting commands and re-organise (#543)
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- tightening
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Commits on Oct 31, 2025
- tidying
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- fix typo
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- small fix
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Commits on Nov 1, 2025
- tightening the conclusion with advice
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Commits on Nov 3, 2025
- Add module docstring for experiments module (#546)
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Commits on Nov 7, 2025
- tighten writing and add spike and slab model for nhefs
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Commits on Nov 8, 2025
- tightening intro
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Commits on Nov 10, 2025
- adding vs module
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- [pre-commit.ci] pre-commit autoupdate (#551)
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- break up joint model function
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Commits on Nov 12, 2025
- Add `AGENTS.md` file (#552)
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- Add Type Hints to `simulate_data.py` (#544)
  
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- Add MyPy Checks (#556)
  
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- Add reporting layer (#554)
  
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- small fix for Ben
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- Merge pull request #537 from NathanielF/cate_example
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Commits on Nov 14, 2025
Commits on Nov 18, 2025
- Merge main into cetagostini/adding_bsts_to_causalpy
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- Fix: Initialize second_model properly in StateSpaceTimeSeries
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- dev notebook
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Commits on Nov 19, 2025
- [pre-commit.ci] pre-commit autoupdate (#566)
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- Merge branch 'main' into vs_module
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Commits on Nov 20, 2025
- adding demo notebook
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- trying to fix doctests
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- adding fix
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- another fix
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- update fix
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- adding tests
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Commits on Nov 21, 2025
- update adding more tests
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- add normal test vs_prior
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- Merge branch 'main' into cetagostini/adding_bsts_to_causalpy
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- get new models to issue warnings that they are experimental
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- create markdown file of issues to resolve given this initial BSTS implementation
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- Merge pull request #473 from pymc-labs/cetagostini/adding_bsts_to_causalpy
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- improving test coverage
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- updating notebook
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- update index
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- Merge branch 'main' into vs_module
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- update spelling
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Commits on Nov 22, 2025
- add binary treatment case to IV model
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Commits on Nov 24, 2025
Commits on Nov 26, 2025
- Refactor PyMC time series models to use xarray API
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- adding more write up
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- update heading
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- hide cells
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Commits on Nov 29, 2025
- Three period ITS (#575)
  
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- Merge branch 'main' into cetagostini/bsts_tech_debt_v0
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- Refactor time series model API to use xarray coordinates
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- get tests passing
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- minor tweaks to dev notebook
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- increase code coverage
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- delete refactoring concerns doc
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- Merge pull request #577 from pymc-labs/cetagostini/bsts_tech_debt_v0
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Commits on Dec 1, 2025
- [pre-commit.ci] pre-commit autoupdate (#580)
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Commits on Dec 5, 2025
- Improve UML workflow branch and PR handling (#581)
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- Update `pyproject.toml`, including stricter linting rules (#571)
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Commits on Dec 8, 2025
- Update UML Diagrams (#585)
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- [pre-commit.ci] pre-commit autoupdate (#586)
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Commits on Dec 9, 2025
- better story telling
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- tidying
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- hide cell inputs
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- Merge branch 'main' into vs_module
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- fixing linting
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- fix linting error
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- update typing
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- spell check
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Commits on Dec 11, 2025
- Add CausalPy skills and command documentation
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- Update causalpy_extras.md
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Commits on Dec 15, 2025
- Merge pull request #589 from pymc-labs/cetagostini/marimo_demo
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Commits on Dec 18, 2025
- Improve load_data function documentation with complete dataset list (#592)
  
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- [pre-commit.ci] pre-commit autoupdate (#590)
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Commits on Dec 20, 2025
- Fix overlapping x-axis date labels in time series plots (#597)
  
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Commits on Dec 22, 2025
- update for juan's comments.
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- update tests to include outcome parameter in vs_hyperparams
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- Merge branch 'main' into vs_module
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Commits on Dec 23, 2025
- add type hints
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- bug fix
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- fixing the warning message
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- [pre-commit.ci] pre-commit autoupdate (#605)
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  github-actions[bot]
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  6795c14
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Commits on Jan 1, 2026
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  Copilot
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  drbenvincent
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  3dd2fe6
Commits on Jan 2, 2026
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