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Update reference-database status to the current Workbench registry - #20
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The reference-database section still showed 130 plugins with 23 template scaffolds (107 implemented). Reconciled against the Workbench plugin registry on main (2026-09-26), using the docs catalog generator's source classification: - 129 reference databases: NCBI Gene, RefSeq and Orphadata were removed from Workbench as duplicates of the NCBI and Orphanet connectors; Rhea and Pathway Commons were added (Pathways group). - 126 implemented: the scaffold tag is removed from the 20 connectors built since (OncoKB, VarSome, Mastermind, LOVD, TOPMed, All of Us, CCLE, dbGaP, DepMap, EGA, UK Biobank, SIDER, T3DB, VarCards, dbMTS, BioCyc, MSigDB...). T3DB, VarCards and dbMTS are marked "availability status only"; SIDER's card states its actual scope (drug-name search over operator-supplied release files). - 1 licence-required: GeneCards (no public API documentation; terms prohibit scraping and AI use). - 2 scaffolds remain: Clinvitae and GWAS Summary Statistics. Filter, group, summary and catalog-tile counts updated; cards sorted alphabetically with dimmed entries last. Docs-catalog anchor links are unchanged (they target the currently published docs). Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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Summary
The reference-database section showed 130 · 107 implemented · 23 scaffolded. Reconciled with the Workbench plugin registry on
main(2026-09-26) using the docs catalog generator's source classification. It now shows 129 · 126 implemented · 1 licence-required · 2 scaffolded.Filter, group, summary and catalog-tile counts are updated. Docs anchor links are unchanged: they target the currently published docs catalog, which is itself stale and needs regenerating separately.
Test plan
html5validatorrun (same ignore list as.github/workflows/ci.yml): passesgit diff --checkclean🤖 Generated with Claude Code