IGH-BCL2 is not detected but bam is supported

[swxzh621]

I have a sample with BCL2-IGH verified by FISH. There are lots of reads to support viewed by IGV. the pictuers is as follows. I am running with default parameters，and BCL2,IGH is included in csv file

BCL2_NM_000633,chr18:60790579-60987361
1,60986406,60986613
2,60985314,60986185
3,60790578,60795992

IGH,chr14:106052774-107288051

I would like to know whether or not relevant parameters need to be adjusted. Thanks a lot

[hushuzuiniu]

Hi,
I had the same query, may I ask if you have resolved it now? very grateful if you can advise.

[salhajh]

Hello.

I also had the same question myself and would appreciate any advice if it has been resolved? Thank you.