PathoGenOmics Lab

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1. snpick snpick Public

   snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performance.

   Rust 16 2

2. pathotypr pathotypr Public

   Genome classificator using machine learning and SNP markers

   JavaScript 12 1

3. get_MNV get_MNV Public

   Turns same-codon SNVs into MNVs and computes the true amino acid change

   Rust 10 2

4. VIPERA VIPERA Public

   A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

   Python 8

5. fstic fstic Public

   Calculates pairwise distances between samples using alelle frequencies

   Rust 8

6. mycolorsTB mycolorsTB Public

   R Color package for Mycobacterium tuberculosis complex

   R 6