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@ProteinDesignLab

Protein Design Lab

Possu Huang Lab, Stanford Bioengineering

Popular repositories Loading

  1. protpardelle protpardelle Public

    Diffusion-based all-atom protein generative model.

    Python 239 22

  2. protein-design-tutorials protein-design-tutorials Public

    Tutorials, cheat sheets, and other resources for computational methods for protein design.

    Jupyter Notebook 138 29

  3. caliby caliby Public

    Potts model-based protein sequence design

    Python 116 17

  4. protpardelle-1c protpardelle-1c Public

    Updated Protpardelle models with more robust motif scaffolding and multichain support

    Python 85 14

  5. protein_seq_des protein_seq_des Public

    Code for our paper "Protein sequence design with a learned potential"

    Python 81 24

  6. IgVAE IgVAE Public

    Forked from egurapha/IgVAE

    A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.

    Python 32 5

Repositories

Showing 10 of 15 repositories
  • dEVA Public Forked from gelnesr/dEVA

    design by evolutionary algorithm

    ProteinDesignLab/dEVA's past year of commit activity
    Python 6 MIT 3 0 0 Updated Aug 23, 2026
  • caliby Public

    Potts model-based protein sequence design

    ProteinDesignLab/caliby's past year of commit activity
    Python 116 Apache-2.0 17 0 0 Updated Jul 1, 2026
  • SLAE Public
    ProteinDesignLab/SLAE's past year of commit activity
    Python 14 Apache-2.0 0 1 0 Updated Jun 29, 2026
  • 3DRNA Public
    ProteinDesignLab/3DRNA's past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 11, 2026
  • protpardelle-1c Public

    Updated Protpardelle models with more robust motif scaffolding and multichain support

    ProteinDesignLab/protpardelle-1c's past year of commit activity
    Python 85 MIT 14 2 0 Updated May 1, 2026
  • protpardelle Public

    Diffusion-based all-atom protein generative model.

    ProteinDesignLab/protpardelle's past year of commit activity
    Python 239 MIT 22 4 0 Updated Aug 27, 2025
  • protein_shapes Public

    Metrics to evaluate distributional coverage of generative models of protein structures.

    ProteinDesignLab/protein_shapes's past year of commit activity
    Python 21 MIT 4 1 1 Updated Aug 13, 2025
  • protein_seq_des Public

    Code for our paper "Protein sequence design with a learned potential"

    ProteinDesignLab/protein_seq_des's past year of commit activity
    Python 81 BSD-3-Clause 24 0 0 Updated Sep 8, 2023
  • protein-design-tutorials Public

    Tutorials, cheat sheets, and other resources for computational methods for protein design.

    ProteinDesignLab/protein-design-tutorials's past year of commit activity
    Jupyter Notebook 138 29 0 0 Updated Aug 15, 2023
  • IgVAE Public Forked from egurapha/IgVAE

    A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.

    ProteinDesignLab/IgVAE's past year of commit activity
    Python 32 BSD-3-Clause 10 0 0 Updated Jul 25, 2022

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