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Rostlab

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  1. predictprotein-docker predictprotein-docker Public

    Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository will result in a fully functioning predictprotein suite, in…

    Dockerfile 15 7

  2. bio_embeddings bio_embeddings Public

    Repository containing bio_embeddings resources

    2 1

  3. EAT EAT Public

    Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer annotations from a set of labeled lookup protein embeddings to …

    Python 41 7

  4. VESPA VESPA Public

    VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5.

    Python 37 9

  5. TMbed TMbed Public

    Transmembrane proteins predicted through Language Model embeddings

    1

  6. ProtTrans ProtTrans Public

    Forked from agemagician/ProtTrans

    ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

    Jupyter Notebook 12 1

Repositories

Showing 10 of 57 repositories
  • pbc Public

    Protein (language model) Benchmarking Collection - PBC

    Rostlab/pbc's past year of commit activity
    Python 4 AFL-3.0 1 0 0 Updated Aug 19, 2026
  • pp-status Public

    Status Page for Predict Protein

    Rostlab/pp-status's past year of commit activity
    HTML 0 0 0 0 Updated Feb 24, 2026
  • mlschool Public

    Website for the Machine Learning Summerschool for Toxinologists

    Rostlab/mlschool's past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Dec 17, 2025
  • bindPredict Public

    Prediction of binding residues for metal ions, nucleic acids, and small molecules.

    Rostlab/bindPredict's past year of commit activity
    Python 37 MIT 11 2 0 Updated Sep 2, 2025
  • EAT Public

    Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer annotations from a set of labeled lookup protein embeddings to query protein embedding.

    Rostlab/EAT's past year of commit activity
    Python 41 GPL-3.0 7 1 0 Updated Aug 29, 2025
  • LambdaPP Public
    Rostlab/LambdaPP's past year of commit activity
    JavaScript 4 AFL-3.0 1 0 0 Updated May 12, 2025
  • goPredSim Public
    Rostlab/goPredSim's past year of commit activity
    Python 51 MIT 4 0 0 Updated Dec 2, 2024
  • TMvisDB Public archive

    TMvisDB provides per-residue transmembrane topology annotations for all proteins in AlphaFold DB (~ 200 million proteins, September '22) predicted as transmembrane proteins (~ 46 million).

    Rostlab/TMvisDB's past year of commit activity
    Jupyter Notebook 0 AFL-3.0 0 0 0 Updated Nov 13, 2024
  • RostSpace Public archive
    Rostlab/RostSpace's past year of commit activity
    Python 2 AGPL-3.0 0 2 0 Updated Oct 17, 2024
  • VESPA Public

    VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5.

    Rostlab/VESPA's past year of commit activity
    Python 37 AGPL-3.0 9 1 0 Updated Mar 4, 2024
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