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@SexChrLab

Sex Chromosome Lab

Codes from Sex Chr Lab projects

Popular repositories Loading

  1. BioinformaticsIntroduction BioinformaticsIntroduction Public

    Tutorials to get started in bioinformatics

    52 7

  2. XYalign XYalign Public

    Python 30 2

  3. XY_RNAseq XY_RNAseq Public

    R 8 5

  4. SexInference SexInference Public

    Infer sex from DNA sequencing data and RNA sequencing data

    R 6 1

  5. Cancer_Genomics Cancer_Genomics Public

    Assembling pipelines for our cancer genomics work. This includes neoepitope identification, and sex difference analyses.

    Python 5

  6. EpitopePipeline EpitopePipeline Public

    Pipeline for predicting neoepitopes

    Python 4 1

Repositories

Showing 10 of 53 repositories
  • Placenta_Genomics_Database Public

    This repository contains data and code for annotating placenta genomics datasets.

    SexChrLab/Placenta_Genomics_Database's past year of commit activity
    Python 4 2 0 0 Updated Aug 27, 2026
  • Menopause_OVX Public
    SexChrLab/Menopause_OVX's past year of commit activity
    0 0 0 0 Updated Sep 30, 2025
  • FunctionalXandY Public

    Describes methods to use expression of specific genes on the X and Y chromosomes to infer the sex chromosome complement and identifies genes consistently affected by loss of chromosome X (LOX), loss of X chromosome inactivation (XaXa), and loss of chromosome Y

    SexChrLab/FunctionalXandY's past year of commit activity
    0 MIT 0 0 0 Updated Sep 29, 2025
  • SCC-alignment Public

    repository for code associated with the SCC-aware alignment tutorial paper (Plaisier et al. 202x)

    SexChrLab/SCC-alignment's past year of commit activity
    Python 0 0 0 0 Updated Sep 11, 2025
  • VariantCalling Public

    Investigating the effects of different parameters on variant calling genome-wide (A, X, Y, mtDNA)

    SexChrLab/VariantCalling's past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Aug 4, 2025
  • CCLE_SexChr Public

    Identifying sex chromosome complement in cancer cell line encyclopedia (CCLE) samples

    SexChrLab/CCLE_SexChr's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 3 0 0 Updated Feb 6, 2025
  • SexChrCoordinates Public

    Coordinates for genomic features on human X and Y chromosomes.

    SexChrLab/SexChrCoordinates's past year of commit activity
    1 0 1 0 Updated Dec 29, 2024
  • SexInference Public

    Infer sex from DNA sequencing data and RNA sequencing data

    SexChrLab/SexInference's past year of commit activity
    R 6 GPL-3.0 1 2 0 Updated Oct 7, 2024
  • Snails Public
    SexChrLab/Snails's past year of commit activity
    0 0 0 0 Updated Sep 16, 2024
  • ComparativePlacenta Public
    SexChrLab/ComparativePlacenta's past year of commit activity
    0 Unlicense 0 0 0 Updated Aug 10, 2024
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