Dear Superzchen,
The APAAC module fails when invoked from iLearn-protein-basic.py with a fasta file with peptides of length 13.
The problem I think is that the iLearn-protein-basic.py has a --format value 'tsv_1' that is missing in the APAAC module.
Also, In the iLearn-auto-pipline looks like it is possible to invoke the APAAC module with the param lambdaValue, but the APAAC has a --lamada parametr instead:
parser.add_argument("--lamada", type=int, default=30, help="the lamada value for SOCNumber descriptor")
cheers
Michele
Dear Superzchen,
The APAAC module fails when invoked from iLearn-protein-basic.py with a fasta file with peptides of length 13.
The problem I think is that the iLearn-protein-basic.py has a --format value 'tsv_1' that is missing in the APAAC module.
Also, In the iLearn-auto-pipline looks like it is possible to invoke the APAAC module with the param lambdaValue, but the APAAC has a --lamada parametr instead:
parser.add_argument("--lamada", type=int, default=30, help="the lamada value for SOCNumber descriptor")
cheers
Michele