Repository navigation
Require Cellpose 4.2 and default to cpsam_v2 - #28
Merged
Merged
Conversation
Cellpose 4.2 adds the DINOv3-based cpdino/cpdino-vitb models and the updated CellposeSAM model cpsam_v2, which predicts fewer spurious masks in low-contrast regions and is Cellpose's own default since 4.2. Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #28 +/- ##
=======================================
Coverage 78.73% 78.73%
=======================================
Files 54 54
Lines 1876 1876
=======================================
Hits 1477 1477
Misses 399 399 ☔ View full report in Codecov by Harness. 🚀 New features to boost your workflow:
|
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Part of 0.10.0 (not yet released).
cellposeextra:>=4.2,<5(4.2.0 is the first release shippingcpsam_v2,cpdinoandcpdino-vitb; verified in the 4.2.0 wheel).so.segment.cellposedefaults topretrained_model="cpsam_v2", matching Cellpose's own default; docstrings list the built-in models.cpsammodel.Tests:
test/segment33 passed with the new default; ruff and mypy clean.🤖 Generated with Claude Code