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@etetoolkit

ETE Toolkit

A Python framework for the analysis and visualization of trees.

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  1. ete ete Public

    Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …

    Python 884 232

  2. cookbook cookbook Public

    HTML 20 9

  3. course course Public

    Jupyter Notebook 13 9

  4. treematcher treematcher Public

    Search flexible patterns within tree structures using regular expression like syntax.

    Python 10 13

  5. pmodeltest pmodeltest Public

    Python implementation of modeltest/prottest supporting proteins and nucleotides (can be run in parallel).

    Python 6 4

  6. ext_apps ext_apps Public

    A compilation of external software used by ETE

    C 4 6

Repositories

Showing 10 of 16 repositories
  • ete Public

    Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

    etetoolkit/ete's past year of commit activity
    Python 884 GPL-3.0 232 244 14 Updated Jun 1, 2026
  • etestore Public
    etetoolkit/etestore's past year of commit activity
    Python 0 MIT 0 0 0 Updated May 6, 2026
  • ete-gallery Public

    Examples of use of the ETE Toolkit

    etetoolkit/ete-gallery's past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Mar 17, 2026
  • ete-data Public

    Data files to use with the ETE Toolkit

    etetoolkit/ete-data's past year of commit activity
    Python 0 GPL-3.0 1 0 1 Updated Dec 15, 2025
  • ete4 Public
    etetoolkit/ete4's past year of commit activity
    Python 2 GPL-3.0 0 1 0 Updated Feb 3, 2025
  • ete4_apps Public

    command line applications based on ete4

    etetoolkit/ete4_apps's past year of commit activity
    HTML 0 0 0 0 Updated Dec 7, 2021
  • course Public
    etetoolkit/course's past year of commit activity
    Jupyter Notebook 13 9 0 0 Updated Sep 1, 2020
  • webplugin Public

    Experiments for a new webplugin module (examples for phylotastic.org project )

    etetoolkit/webplugin's past year of commit activity
    Python 4 4 1 1 Updated May 19, 2020
  • pmodeltest Public

    Python implementation of modeltest/prottest supporting proteins and nucleotides (can be run in parallel).

    etetoolkit/pmodeltest's past year of commit activity
    Python 6 4 2 0 Updated Feb 26, 2020
  • logicali Public
    etetoolkit/logicali's past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated May 28, 2018
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