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@ikmb

Institute of Clinical Molecular Biology

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  1. MAGScoT MAGScoT Public

    MAGScoT - a MAG scoring and refinement tool

    Python 49 4

  2. eagleimp eagleimp Public

    C++ 28 4

  3. TOFU-MAaPO TOFU-MAaPO Public

    Nextflow pipeline for the analysis of metagenomic short reads.

    Nextflow 25 9

  4. vcf2prot vcf2prot Public

    Accelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical processing units (GPUs).

    Rust 21 2

  5. amino_acid_encoding_deep_learning_applications amino_acid_encoding_deep_learning_applications Public

    The repository contains all the code for the paper amino acid encoding using deep learning application

    Python 20 5

  6. gwas-assoc gwas-assoc Public

    The IKMB GWAS Association Testing Pipeline

    Python 9 2

Repositories

Showing 10 of 77 repositories
  • TOFU-MAaPO Public

    Nextflow pipeline for the analysis of metagenomic short reads.

    ikmb/TOFU-MAaPO's past year of commit activity
    Nextflow 25 GPL-3.0 9 2 0 Updated Sep 21, 2026
  • checkphase Public
    ikmb/checkphase's past year of commit activity
    C++ 0 GPL-3.0 0 1 0 Updated Sep 11, 2026
  • EagleImp-RAP Public

    Eagleimp app for the UKB RAP (dnanexus)

    ikmb/EagleImp-RAP's past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Sep 10, 2026
  • bloodAGENT Public
    ikmb/bloodAGENT's past year of commit activity
    C++ 8 BSD-2-Clause 2 0 0 Updated Sep 10, 2026
  • ngs-qc Public

    QC tools for new sequencing runs (FastQC, FastQ Screen, MultiQC Report)

    ikmb/ngs-qc's past year of commit activity
    Nextflow 0 GPL-3.0 1 0 0 Updated Sep 9, 2026
  • run_ampliseq Public
    ikmb/run_ampliseq's past year of commit activity
    R 1 MIT 0 0 0 Updated Jun 24, 2026
  • phewas-assoc Public

    The IKMB Association Testing Pipeline for PheWAS

    ikmb/phewas-assoc's past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 16, 2026
  • shiny_mikrob Public
    ikmb/shiny_mikrob's past year of commit activity
    R 0 MIT 0 3 0 Updated May 21, 2026
  • hla Public

    IKMB pipeline to type HLA alleles from NGS data

    ikmb/hla's past year of commit activity
    Ruby 3 GPL-3.0 2 0 0 Updated May 6, 2026
  • TOFUpaper Public
    ikmb/TOFUpaper's past year of commit activity
    Shell 1 0 0 0 Updated Apr 23, 2026

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