All pull requests

Pull requests

• feat(backend): [DEMO] add v2 group endpoints

  backend
  #7549·maverbiest opened Oct 15, 2026Contributor·2/2·

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  1

• Poc/lapis auth

  preview
  #7548·andreashille opened Oct 15, 2026·3 tasks·

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  2

• feat(website): Extend acknowledgement text to mention benefit sharing

  previewwebsite
  #7547·maverbiest opened Oct 15, 2026Contributor·

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  2

• chore(deps): bump com.github.luben:zstd-jni from 1.5.7-21 to 1.5.7-23 in /backend

  dependenciesjava
  #7544·dependabot[bot] opened Oct 14, 2026Bot·

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• chore(deps-dev): bump the minorandpatch group in /integration-tests with 7 updates

  dependenciesjavascript
  #7543·dependabot[bot] opened Oct 14, 2026Bot·

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• chore(deps): bump the patch group in /website with 13 updates

  dependenciesjavascript
  #7542·dependabot[bot] opened Oct 14, 2026Bot·

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• chore(deps): bump the patch group in /backend with 5 updates

  dependenciesjava
  #7541·dependabot[bot] opened Oct 14, 2026Bot·

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• refactor(backend): [DEMO] Experimenting with v2 API in backend

  backend
  #7540·maverbiest opened Oct 14, 2026Contributor·1/2·

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  2

• chore(api): [DEMO – DO NOT MERGE] separate v2 API service with group management

  don't merge
  #7539·theosanderson-agent opened Oct 14, 2026Collaborator·

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• feat(website): Draft SeqSets and find accessions via website

  previewwebsite
  #7538·tombch opened Oct 14, 2026Collaborator·3 tasks·

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• refactor(prepro, website): improve errors and warnings from host validation

  preprocessingpreview
  #7535·maverbiest opened Oct 13, 2026Contributor·1 of 3 tasks·

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  1

  7

• chore: add Dockerfile and threat model for Anthropic OSS Scanner

  #7534·theosanderson-agent opened Oct 11, 2026Collaborator·

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• feat(raw-reads,prepro): centralize error logging in raw reads processing service

  preprocessing
  #7533·maverbiest opened Oct 9, 2026Contributor·3 tasks·

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  1

  6

• fix(deposition): stop warning about directories and binaries in webin-cli output

  deposition
  #7532·corneliusroemer opened Oct 9, 2026Contributor·2 tasks done·

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  1

  3

• feat(website): RU prompt for individual sequence download

  previewwebsite
  #7506·theosanderson-agent opened Oct 7, 2026Collaborator·

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  4

• test(ingest): add tests for attaching raw reads from ENA

  depositioningest
  #7496·theosanderson-agent opened Oct 6, 2026Collaborator·4/4·3 tasks·

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  1

• feat(ingest): attach raw reads hosted at ENA to ingested entries

  deploymentdepositioningest
  #7495·theosanderson-agent opened Oct 6, 2026Collaborator·3/4·

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• test(backend): add tests for linking external files

  backendpreprocessing
  #7494·theosanderson-agent opened Oct 6, 2026Collaborator·2/4·

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• feat(backend): allow linking files hosted in trusted external archives

  backenddeploymentpreprocessing
  #7493·theosanderson-agent opened Oct 6, 2026Collaborator·1/4·

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• feat(backend, deployment): daily write quotas per group and instance-wide

  backenddeployment
  #7492·corneliusroemer-agent opened Oct 6, 2026Collaborator·3 tasks·

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  1

• feat(action):add oropouche virus

  #7491·arthurshem86 opened Oct 6, 2026Contributor·1 of 3 tasks·

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• fix(backend): don't issue file IDs whose S3 object already exists

  preprocessing
  #7441·corneliusroemer-agent opened Sep 28, 2026Collaborator·

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  1

• DON'T MERGE: query engine review fixes preview (stacked on #7431)

  backenddeploymentdon't mergepreviewupdate_db_schema
  #7435·corneliusroemer-agent opened Sep 28, 2026Collaborator·

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• fix(taxonomy): accept NCBI synonyms and common names as hosts, strip whitespace

  preprocessing
  #7433·corneliusroemer-agent opened Sep 28, 2026Collaborator·

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  1

• query experiments, not to merge

  backendpreview
  #7431·theosanderson opened Sep 27, 2026Member·3 tasks·

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  1