All pull requests

Pull requests

• Documentation additions and visualisation

  #1355·kebarr opened Sep 24, 2026Collaborator·

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• Add burst clustering option to plot_haplotype_clustering_advanced

  #1354·sanjaynagi opened Sep 16, 2026Collaborator·

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• Revise setup instructions for macOS

  #1348·moylstmed360 opened Sep 3, 2026Collaborator·

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• Correct NumPy version in CONTRIBUTING.md CI note

  #1347·moylstmed360 opened Sep 1, 2026Collaborator·

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• PCA 'max_cohort_size' doesn't work properly

  #1339·jonbrenas opened Jul 16, 2026Collaborator·

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• Add kinship coefficients

  #1338·tristanpwdennis opened Jul 8, 2026Collaborator·

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• Unify contributing guides

  #1331·jwgarber opened Jun 20, 2026Contributor·

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• Admixture f3 and f4 statistics function.

  #1330·KellyLBennett opened Jun 10, 2026Collaborator·

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• handle Mapping cohorts in pca

  #1329·31puneet opened Jun 1, 2026Contributor·

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• Add pydantic Field constraints

  #1319·31puneet opened Apr 22, 2026Contributor·

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• Add stacklevel 2

  #1318·31puneet opened Apr 22, 2026Contributor·

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• Make the sex-linked contig configurable in CNV frequency analysis

  #1314·khushthecoder opened Apr 18, 2026Contributor·

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• Surface ipinfo.io location check failures (closes #1311)

  #1312·kunal-10-cloud opened Apr 18, 2026Contributor·

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• Extract plot_haplotype_network into AnophelesHapNetAnalysis mixin

  #1310·AswaniSahoo opened Apr 18, 2026Contributor·

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• Fix #1308: Remove dead dask.config.set() at module import time

  #1309·khushthecoder opened Apr 17, 2026Contributor·

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• fix: guard against empty data in plot_cnv_hmm_coverage_track

  #1307·suhr25 opened Apr 17, 2026Contributor·

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• fix: expand CI coverage to full malariagen_data package and update codecov action

  #1302·kunal-10-cloud opened Apr 15, 2026Contributor·

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• Add dataset summary

  #1300·Mo-3bkreem opened Apr 15, 2026·

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• Add PBS genome-wide scan

  #1299·31puneet opened Apr 15, 2026Contributor·

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• fix: replace hardcoded GCS cache keys with monthly-rotating dynamic keys

  #1297·kunal-10-cloud opened Apr 14, 2026Contributor·

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• feat: add public cache_info() and clear_cache() API (fixes #1289)

  #1295·khushthecoder opened Apr 14, 2026Contributor·

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• fix: expose cohort size parameters in diversity_stats

  #1290·adilraza99 opened Apr 13, 2026Contributor·

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• Fix #1283: Warn and handle missing FORMAT fields in snp_calls_to_vcf()

  #1284·Yashsingh045 opened Apr 10, 2026Contributor·

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• Compute and plot inversion frequencies

  #1282·31puneet opened Apr 10, 2026Contributor·

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• refactor: migrate karyotype tag loading to GCS and add simulated tests

  #1278·adilraza99 opened Apr 8, 2026Contributor·

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