Issues

• segmentation fault

  rgcgithub/clamms#29 · Filter by author lmanchon opened on Oct 24, 2023

• calc_window_mappability.py

  rgcgithub/clamms#28 · Filter by author lmanchon opened on Oct 23, 2023

• SVD from matrix

  rgcgithub/clamms#27 · Filter by author YeCheng57 opened on Mar 14, 2021

• SVD Software no longer available

  rgcgithub/clamms#25 · Filter by author ricardoharripaul opened on Jan 1, 2021
  5

• ERROR: coverage file and models file must be for exactly the same set of genomic windows

  rgcgithub/clamms#24 · Filter by author tpjones15 opened on Dec 15, 2020
  1

• Nearest neighbours

  rgcgithub/clamms#23 · Filter by author katherinef opened on Feb 11, 2020

• Error executing CLAMMS: ERROR: more than 4096 CNVs detected!

  rgcgithub/clamms#22 · Filter by author lakhujanivijay opened on Feb 3, 2020
  2

• Mappability file for hg38

  rgcgithub/clamms#21 · Filter by author katherinef opened on Jan 31, 2020
  2

• Gender information is optional - will omitting that make any difference?

  rgcgithub/clamms#20 · Filter by author lakhujanivijay opened on Dec 16, 2019

• Which file is the sample.cnv.txt file used by plot_cnv.sh script?

  rgcgithub/clamms#19 · Filter by author lakhujanivijay opened on Nov 29, 2019

• What file from the GATK DepthOfCoverage should be input to gatk_coverage_to_bed?

  rgcgithub/clamms#18 · Filter by author lakhujanivijay opened on Oct 11, 2019
  1

• command gatk_coverage_to_bed is missing from CLAMMS installation directory

  rgcgithub/clamms#17 · Filter by author lakhujanivijay opened on Oct 10, 2019
  1

• Problem with export command on the CLAMMS documentation page

  rgcgithub/clamms#16 · Filter by author lakhujanivijay opened on Oct 9, 2019

• creating QCs metrics file

  rgcgithub/clamms#15 · Filter by author thedam opened on Jun 6, 2018
  2

• Running sam_gatk_coverage_to_bed on gatk DOC files

  rgcgithub/clamms#14 · Filter by author si3 opened on May 10, 2018

• calc_window_mappability.py line 69 syntax error

  rgcgithub/clamms#13 · Filter by author AlexGreiner opened on Mar 15, 2018
  2

• plotting fails

  rgcgithub/clamms#10 · Filter by author inijman opened on Sep 29, 2017
  3

• TypeError: 'NonType object has no attribute '__getitem__'

  rgcgithub/clamms#8 · Filter by author stefandiederich opened on Jun 29, 2017
  2

• call_cnv output .cnv.bed is empty

  rgcgithub/clamms#6 · Filter by author yingchen69 opened on Mar 31, 2017
  6

• Memory errors while running 'call_cnv'

  rgcgithub/clamms#5 · Filter by author vijaymp38 opened on Mar 6, 2017
  4

• The windows.bed is empty

  rgcgithub/clamms#4 · Filter by author jacobhsu35 opened on Nov 23, 2016
  1

• nan in created model.bed?

  rgcgithub/clamms#3 · Filter by author JMF47 opened on May 11, 2016
  1

• mappability 150bp reads

  rgcgithub/clamms#2 · Filter by author wdecoster opened on May 4, 2016
  1