Adding option to take input from stdin - #124

Merged

andrewdavidsmith merged 26 commits into

mainfrom

Sep 6, 2026

Commits on Sep 3, 2026

src/reads_file.hpp: making a var name more sensible
andrewdavidsmith
committed
6b70baf
src/sam_file.hcpp: adding load next and symmetry in code with fastq_file
andrewdavidsmith
committed
3154716
CMakeLists.txt: adding fastq_stdin object
andrewdavidsmith
committed
0fc8941
src/fastq_stdin.hcpp: adding sources for reading fastq from stdin
andrewdavidsmith
committed
91d4149
src/sam_file.cpp and src/fastq_stdin.cpp: preventing compiler from complaints about mismatching types in std::div
andrewdavidsmith
committed
e6ae0ac
src/falco_file_format.hpp: format now uses names of file_format values
andrewdavidsmith
committed
03661a2

Commits on Sep 5, 2026

Commits on Sep 6, 2026