Minor bugfixes and improvements related to reading from stdin - #125
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… arg and used as name for data set, is not modified by attemting to remove a filename extension, because the inputis not a file
…nly applies to records, so after the header has been read or if there is no header
…ature of validate_fastq and moving that validation to the analogous place as in sam_stdin
…ith how it's done for other classes
…setup that depends on whether input is from stdin, which is likely rare
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