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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.9k 653

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 255 215

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 196 32

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    64 15

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 55 57

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 37 12

Repositories

Showing 10 of 74 repositories
  • snakefmt Public

    The uncompromising Snakemake code formatter

    snakemake/snakefmt's past year of commit activity
    Python 196 MIT 32 2 5 Updated Sep 9, 2026
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm's past year of commit activity
    Python 55 MIT 57 40 5 Updated Sep 9, 2026
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake's past year of commit activity
    Python 2,865 MIT 653 987 (1 issue needs help) 114 Updated Sep 8, 2026
  • snakemake-software-deployment-plugin-container Public

    Run snakemake within a rootless container

    snakemake/snakemake-software-deployment-plugin-container's past year of commit activity
    Python 2 MIT 1 0 1 Updated Sep 8, 2026
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers's past year of commit activity
    Python 255 215 5 46 Updated Sep 8, 2026
  • snakemake-software-deployment-plugin-conda Public

    A Snakemake software deployment plugin for using conda packages. Implemented using py-rattler.

    snakemake/snakemake-software-deployment-plugin-conda's past year of commit activity
    Python 2 0 2 3 Updated Sep 7, 2026
  • snakemake-interface-software-deployment-plugins Public

    A stable interface for Snakemake software deployment plugins

    snakemake/snakemake-interface-software-deployment-plugins's past year of commit activity
    Python 0 MIT 2 1 0 Updated Sep 7, 2026
  • snakemake-report-plugin-nanopub Public

    Snakemake Report Plugin to automatically create Nanopubs after workflow runs holding all metadata of that workflow

    snakemake/snakemake-report-plugin-nanopub's past year of commit activity
    Python 1 MIT 0 0 2 Updated Sep 7, 2026
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog's past year of commit activity
    Python 37 MIT 12 3 (1 issue needs help) 0 Updated Sep 7, 2026
  • snakemake-interface-common Public

    Common functions and classes for Snakemake and its plugins

    snakemake/snakemake-interface-common's past year of commit activity
    Python 0 MIT 7 6 4 Updated Sep 7, 2026