FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
browsing large volumetric data and shapes
UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images
Python code for merging and refinement of detected neurons in large 3D stacks
NeuroPack is a research-oriented neural compression toolkit for 3D microscopy volumes.
FIJI plugin for the averaging of ND (2/3/4D) images
SGT-DFO: Anisotropic Spatiotemporal Graph Transformer with Differentiable Graph-Flow Optimization for 3D+time cell tracking, mitosis lineage reconstruction, and light-sheet microscopy segmentation (CZ Biohub Challenge).
Kaggle Biohub – Cell Tracking During Development 솔루션: 공개 x138 파이프라인 + 학습된 3D-CNN 분열 게이트. Public 0.960 / Private 0.925, 155위 / 3,950팀
All this is part of my Projektarbeit (student project) @ TU Wien 2021
Public Everything AI Co research log for Kaggle Biohub 3D cell tracking: scientific ML lessons, negative results, and publication-safe competition closeout notes.
Private Kaggle Biohub cell tracking closeout archive: 3D microscopy lineage tracking, DeepCenter/temporal-UNet/ILP notes, metric reconstruction, and reproducible scientific ML workflow by Everything AI Co.
Biohub 3D cell tracking case study: graph experiments, validation, and Public/Private analysis
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