competitive-mapping

Here are 2 public repositories matching this topic...

adnanhaider81 / pathogen-discovery-pipeline

Metagenomic pathogen-discovery workflow with host subtraction and competitive confirmatory mapping

shell bioinformatics metagenomics public-health pathogen-genomics pathogen-discovery competitive-mapping host-subtraction

Updated Jun 1, 2026
Shell

Qasim-Hussain-Code / competitive_metagenomic_read_recruitment_workflow

Star

An automated Anvi'o v9 Snakemake workflow for competitive metagenomic read recruitment. Resolves conserved sequence homologies to enable strain-level taxonomic profiling, population-level abundance estimation, and genome detection limits across environmental samples.

snakemake metagenomics population-genomics comparative-genomics samtools sequence-alignment bowtie2 microbiome-analysis microbial-ecology anvio strain-level-profiling competitive-mapping read-recruitment

Updated Jul 7, 2026
Shell

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