conservation-genetics

R package for ancestry probability surfaces and spatial genetic decision support

Do Dominant Silverbacks monopolize all reproduction? Microsatellite Paternity & Kinship Analysis in Mountain Gorillas. CERVUS LOD scoring, Queller-Goodnight relatedness, Nonacs B-index. Python

Snakemake workflow for population structure and genetic diversity from a filtered SNP VCF: ancestry inference, population assignment, ROH/F_ROH, pi, and callable-site-aware statistics from GVCFs. Downstream companion to snpArcher.

My first DNA barcoding project - Philippine Eagle, Barn Owl, and Sumatran Rhinoceros

Forecast genetic range shifts under climate change: least cost corridors, Cubist models of FST and directional migration, and maps of where gene flow moves. R package.

This repository is a supplementary information repository from García-Merchán et al... 2020 publication.

An analysis of genetic diversity representation in botanic gardens of a rare oak species and a rare cycad species

Dating hybrid populations beyond F2, with or without a genetic map: simulation-based estimates of hybrid age, backcrossing and ongoing gene flow from diagnostic markers. R package.

Data processing, model fitting, and analysis code for the hierarchical DNA methylation model developed by Murgas et al. (2021)

Analysis code for Paris et al. 2024 iScience: ddRAD assessment of hybridization between Podarcis raffonei and invasive P. siculus on Vulcano (Aeolian Islands)

A Docker repository for a course on analysis of genomic data

Analysis scripts and supporting files for the population genomic study of an endangered microendemic oak.