image-analysis-and-processing

Segment Source Distribution

Package to make analysis of transmission electron microscopy images simple.

A unified framework for example-based texture synthesis, developed alongside my master's thesis.

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and other sciences.

Teaching materials for Boston Bioimage Analysis Course (BoBiAC).

Rolling release code for the nTracer ImageJ/Fiji plugin, as published in: Roossien DH, et. al, Bioinformatics 2019.

A simple Django web app that enables users to upload and download images securely. It handles image storage, validation, and generates download links. Built with Django’s MVC architecture, it provides a clean interface and can be extended for advanced file management.

Example of how to use MATLAB Experiment Manager to manipulate very large images in the context of computational pathology (CPATH).

takes Heidelberg DICOM export files and opens a heyex style viewer allowing for bscan to enface marking

Automatic detection of buildings in satellite images

Segmentation of nuclei, chloroplasts or both, and remaining regions. Area, mean intensity, histograms export.

For raw data file conversion of created SPM images. To make raw data specific software accessible to more data types.

Package for analysis of sensor plant data, based on microscopic images

Code used to generate the figures for the "Neutrophils Actively Swell to Potentiate Migration" paper