Workshop Website
Gene Set Integrative Analysis of Multi-Omics
I discuss and demonstrate the impact of seed nodes selection on information diffusion in a network. I then show how insights obtained by data mining on a network can be integrated with a LLM - like Claude - by building connectors using the Model Context Protocol (MCP) architecture so that users can ask network related questions in natural language.
Network diffusion algorithms in R.
mND uses multi-layer Network Diffusion to find gene networks that contain high scoring genes. It considers two or more "layers" of genome-wide scores and an interactome.
Phosphoproteomic analysis of ALMS1 and BBS1 gene knockout fibroblasts for the study of the TGF-B pathway.
Reproducibility code and derived data for a systems pharmacology study integrating graph learning, CAP transcriptomics, and network diffusion.
A short research into commonalities of Parkinson's and Type 2 diabetes using network propagation on a PPI
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