Surveillance of pathogens using population genomics and sequencing
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Updated
Sep 3, 2026 - Nextflow
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pathogen-identification
Here are 3 public repositories matching this topic...
MIST: a metagenomic intra-species typing tool.
hierarchical-clustering maximum-likelihood-estimation metagenomic-sequencing pathogen-identification decontamination strain-level
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Updated
Jul 26, 2024 - Python
Species-level identification of aquaculture pathogens from nanopore reads on edge hardware: a CPU benchmark of exact k-mer, alignment, and lightweight neural classifiers
benchmark bioinformatics deep-learning nanopore edge-computing aquaculture pathogen-identification fish-diseases
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Updated
Oct 6, 2026 - Python
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