phd-tools

42 AI agent skills for literature review, academic writing, citation verification, conference submission, rebuttal, publication, and presentations.

💬 Trace citation chains for any concept across research papers and render them as an interactive graph.

九阶段科研工作流插件：支持 Claude Code / Codex，提供 mentor、reviewer、mixed 模式，覆盖文献、假设、实验、写作、自审与修订；包含证据追踪、可复现实验、检查点恢复和投稿就绪评估。

PEPICO workstation for VMI photoelectron / ion-TOF coincidence analysis (PySide6 + pyAbel): trigger pairing, TOF selection, VMI centering, Abel inversion, session round-trip.

Professional Scientific Plotting for Academic Publications - From Data to Publication-Ready Figures

PhD manuscript repetition detector & fixer, powered by Gemini AI. Finds semantic repetitions across chapters and suggests rewrites.

Trace research papers recursively to map relevant citations and build interactive knowledge graphs based on keywords or semantic similarity.

BioInfo Tools

Research Paper Automation Toolkit — Python tools that automate academic workflows: extract figures from PDFs, convert papers to PowerPoint slides, export annotations, generate LaTeX figure blocks, and synchronize PNG/PDF figure formats.

Pure-static, local-first research workbench: literature library, calendar, submission tracking, AI assistant, API quota monitoring. Zero dependencies.

Quarto extension for MANIT-style PhD thesis formatting