prottrans

Here are 4 public repositories matching this topic...

adenger / subpred_dl

Code for the manuscript "Application of Protein Structure Encodings and Sequence Embeddings for Transporter Substrate Prediction".

machine-learning bioinformatics deep-learning computational-biology embeddings dataset-generation feature-engineering bioinformatics-analysis structural-bioinformatics protein-structure-prediction membrane-proteins alphafold2 protein-language-models prott5 prottrans

Updated Jun 28, 2025
Jupyter Notebook

SyedKumailHussainNaqvi / ProPepX

Star

ProPepX: A Unified interaction-aware deep learning for protein–peptide binding residue prediction.

transfer-learning protein-binding-site protein-language-model protein-peptide-interaction esm-3 prottrans peptide-binding-site

Updated Jul 13, 2026
Jupyter Notebook

BioMolDynamics / DeepPurpose-MD-Discovery

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End-to-end pipeline for Colab-based drug discovery integrating DeepPurpose, AutoDock Vina, and OpenMM. Supports DTI, docking, MD, and FEL analysis — no HPC cluster needed.

deep-learning openmm colab drug-discovery autodock sars-cov-2 deeppurpose prottrans

Updated Feb 6, 2026
Jupyter Notebook

dipayanskr / protembedder

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bioinformatics deep-learning pytorch protein-embeddings protein-language-model esm2 prottrans

Updated Mar 16, 2026
Python

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