A tool for accurately detecting actively translating ORFs from Ribo-seq data
Scripts and instructions to apply RiboTIE on Ribo-seq data
ORF Quantification pipeline for Alternative Splicing
A comprehensive pipeline for Ribo-seq data analysis
A comprehensive analysis tool for Ribo-seq and small RNA-seq data
Scripts run to produce the RiboTIE paper
Comparing translation of open reading frames within individual transcripts
High-precision ribosome pause detection tool utilizing Negative Binomial modeling to optimize Z-scores and extract ML-ready contextual features from Ribo-seq data.
A toolbox for translatome profiling
A multi-omic bioinformatics pipeline interrogating viral translational hijacking in HCV-infected hepatoma cells. By integrating Ribosome Profiling and RNA-seq, it quantifies translational efficiency, maps ribosomal pause sites, and correlates translational stalling with RNA thermodynamic stability.
Paired RNA-seq/Ribo-seq analysis of translational efficiency changes under nitrogen limitation in an archaeon.
Pipeline and scripts for the comparative analysis of ribosome profiling and matched RNA sequencing data between organs and across species.
A workflow to benchmark tools for differential translation efficiency analysis
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