scg4

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adiamb / SNPTEST-Scripts

A python scripts to split imputed oxford genotype probabilities into chunks for parallel computation using snptest and update sample file needed for analysis

python-script chunk stanford-genomics-cluster split-oxford-gen scg4 snptest

Updated Mar 9, 2019
Python

adiamb / EXOME_1000G_WF

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picard gatk slurm-cluster exome-sequencing-analysis scg4

Updated Jun 26, 2018
Shell

adiamb / IMPUTE_PIPELINE_MIGNOT_SLURM_VER

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This pipeline is a slurm version of the IMPUTE_PIPELINE

pipeline genomics slurm stanford scg4 impute-pipeline

Updated Mar 13, 2020
Python

adiamb / IMPUTE-PIPELINE-MIGNOT-LAB

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A pipeline to impute plink genotypes to 1000 Genomes phase 1

genotype-likelihoods impute-algorithm plink-files scg4

Updated Feb 27, 2018
Shell

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