subread

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Juke34 / AliNe

Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease

Updated Jun 2, 2026
Nextflow

julioramon2004-ux / RepositorioPracticas

Pipeline bioinformático y análisis de datos RNA-seq (control de calidad, trimming y alineamiento) desarrollado durante estancia de investigación en el EPILAB (Pontificia Universidad Javeriana).

bash bioinformatics rna-seq pipeline genomics data-analysis shell-script fastqc fastp subread

Updated Sep 10, 2026
Jupyter Notebook

mattgalbraith / subread-docker-singularity

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Build Docker container for Subread package and (optionally) convert to Apptainer/Singularity.

docker genomics sequencing singularity featurecounts apptainer subread

Updated Mar 4, 2023
Dockerfile

epilabco / human-grch38-subread-index

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Pre-built Subread index for Human GRCh38. Skip the genome indexing step and download the ready-to-use index files instantly.

bioinformatics rna-seq alignment bioinformatics-scripts grch38 hg38 subread bioinformatics-common grch38-p14 genome-index

Updated Sep 17, 2026
Shell

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