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CassandraHjo / Rsearch

Rsearch: An R Interface to VSEARCH supporting visualization and parameter tuning

bioinformatics pipeline clustering fasta fastq metabarcoding amplicon 16s denoising otu vsearch sintax metabarcoding-pipeline unoise

Updated Sep 22, 2026
R

xpolak37 / 16S-rRNA-amplicon-workflow

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Nextflow pipeline for end-to-end taxonomic profiling of paired-end 16S rRNA amplicon data (V3–V4), supporting multiple ASV inference methods and classifiers.

bioinformatics taxonomic-classification dada2 qiime2 deblur 16s-rrna nextflow-pipeline unoise

Updated Sep 10, 2026
HTML

Rudie-K / UoS-eDNA-Bioinformatics

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Automated environmental DNA (eDNA) metabarcoding pipeline for converting NCBI SRA sequencing data into taxonomically annotated species tables.

genomics python3 linux-shell data-analysis blast edna ecology metabarcoding ncbi-blast hpc-cluster cutadapt wsl-ubuntu usearch sra-toolkit unoise

Updated Aug 30, 2026
Python

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