workflowr

Workshop material for BioC Asia 2019

Reproducible workflows in R for processing open geodata to create knowledge about KfW supported protected areas and conservation effectiveness.

Analysing the Indian Elections using R.

Transcriptomics and phenotypic analysis of a cohort of ME/CFS patients.

Papers reviews and book notes throughout my PhD are available here:

🖥️📚 WorkflowR site containing code and analyses produced throghout my PhD thesis.

Transcriptomic cross-species analysis of chronic liver disease reveals consistent regulation between humans and mice

Launch-ready Shiny app scaffolding for reproducible biomedical research dashboards.

Real-time Iot Arduino sensors data into flexdashboard live with Github actions

A simple example ourproj repository

Reproducible genomic prediction study comparing L1/L2-regularized artificial neural networks with GBLUP-ADE under a frozen cross-validation design, using canonical simulated-data workflows, workflowr, and renv.

April 2020: Re-prediction for genomic selection of NRCRI GS C2. Includes prediction of total genetic merit. Includes nearly package-able functions. October 2020: Imputation DCas20_5440 + DCas20_5510 plus fresh genomic prediction including GS C3a.

Repository to test the workflowr Rnotebook system

This the source of the code used to follow the Course Supervised Learning by Julia Silge

A summary-statistic extension of the Regional Association Score (RAS) method, so that regional association testing can run on GWAS summary statistics instead of individual-level data.

An example ourproj repository

Custom workflowr themes and templates for reproducible research websites in R