At the moment the graph is essentially in GFA format anyway as GROOT converts the input MSA to GFA before indexing, but it then serialises it with MessagePack. Could just add an option to write it in GFA too.
This will be useful for debugging as I'm extending GROOT beyond AMR genes.
At the moment the graph is essentially in GFA format anyway as GROOT converts the input MSA to GFA before indexing, but it then serialises it with MessagePack. Could just add an option to write it in GFA too.
This will be useful for debugging as I'm extending GROOT beyond AMR genes.