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@zhanglabtools

zhanglabtools

Dr. Shihua Zhang's laboratory

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  1. STAGATE STAGATE Public

    Forked from RucDongLab/STAGATE

    Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics

    Python 87 14

  2. DSMO.course DSMO.course Public

    Data Science and Matrix Optimization course

    74 37

  3. DeepLearningTheory.course DeepLearningTheory.course Public

    Deep Learning Theory course

    28 4

  4. STAligner STAligner Public

    Forked from zhoux85/STAligner

    STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages

    Jupyter Notebook 26

  5. BrainAlign BrainAlign Public

    Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"

    Python 17 3

  6. CAMEX CAMEX Public

    Jupyter Notebook 17 7

Repositories

Showing 10 of 47 repositories
  • STACAME Public

    Code for STACAME

    zhanglabtools/STACAME's past year of commit activity
    Jupyter Notebook 4 MIT 1 1 0 Updated Sep 4, 2026
  • BNC Public

    Audited reproduction code, paper-data plots, and step-by-step tutorials for Beyond Neural Collapse.

    zhanglabtools/BNC's past year of commit activity
    Python 0 0 0 0 Updated Aug 28, 2026
  • STAVAG Public

    Uncovering directionally and temporally variable genes with STAVAG

    zhanglabtools/STAVAG's past year of commit activity
    Python 4 MIT 0 0 0 Updated Aug 4, 2026
  • STADiffuser Public Forked from messcode/STADiffuser
    zhanglabtools/STADiffuser's past year of commit activity
    Python 0 MIT 3 0 0 Updated Jul 15, 2026
  • STAMO Public

    STAMO is designed for diagonal integration of unpaired spatial multi-omics data.

    zhanglabtools/STAMO's past year of commit activity
    Jupyter Notebook 5 MIT 0 1 0 Updated Jul 4, 2026
  • STAX Public
    zhanglabtools/STAX's past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated May 13, 2026
  • Learn4TSP Public
    zhanglabtools/Learn4TSP's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 24, 2026
  • OTAD Public
    zhanglabtools/OTAD's past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 15, 2026
  • STAMapper Public
    zhanglabtools/STAMapper's past year of commit activity
    Jupyter Notebook 8 MIT 4 0 0 Updated Feb 11, 2026
  • scFM-batcheffect Public
    zhanglabtools/scFM-batcheffect's past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Dec 20, 2025
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