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arjunsridhar12345 merged 2 commits into from
Sep 4, 2026
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docs: add Dynamic Foraging Behavior V2 pipeline #213

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docs: add Dynamic Foraging Behavior V2 pipeline
arjunsridhar12345 Sep 4, 2026
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docs: remove confusing V2 to simplify name
arjunsridhar12345 Sep 4, 2026
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3 changes: 2 additions & 1 deletion docs/source/acquire_upload/process_data.md
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Expand Up @@ -34,11 +34,12 @@ and the pipeline versioning policy is documented in [Versioning pipelines](../po
|---|---|---|
| Patch foraging behavior | `behavior`, `behavior-videos` | [aind-vr-foraging-pipeline](https://github.com/AllenNeuralDynamics/aind-vr-foraging-pipeline) |
| Camstim/Sync Behavior | `behavior`, `behavior-videos` | [aind-behavior-camstim-pipeline](https://github.com/AllenNeuralDynamics/aind-behavior-camstim-pipeline) |
| Dynamic Foraging Behavior | `behavior`, `behavior-videos` | [dynamic-foraging-processing-pipeline](https://github.com/AllenNeuralDynamics/dynamic-foraging-processing-pipeline) |

## Per-project pipelines

| Project name | Modalities | Pipeline repository |
|---|---|---|
| Dynamic foraging (legacy combined behavior + fiber) | `behavior`, `behavior-videos`, `fib` | [github](https://github.com/AllenNeuralDynamics/aind-fiber-photometry-pipeline), [code ocean (release)](https://codeocean.allenneuraldynamics.org/capsule/1307799/tree) |

The Dynamic Foraging entry above is the **legacy** combined behavior + fiber photometry pipeline, for sessions acquired on the pre-HARP/FIP systems (v1 metadata schema) that are being phased out starting in the summer of 2026. Despite the `aind-fiber-photometry-pipeline` repo name, it processes both behavior and fiber. New fiber-only acquisition is processed by [aind-fiber-photometry-harp-pipeline](https://github.com/AllenNeuralDynamics/aind-fiber-photometry-harp-pipeline) (the Fiber photometry row above). The Code Ocean link points to the released pipeline, which automatically resolves to the latest released version
The Dynamic Foraging entry above is the **legacy** combined behavior + fiber photometry pipeline, for sessions acquired on the pre-HARP/FIP systems (v1 metadata schema) that are being phased out starting in the summer of 2026. Despite the `aind-fiber-photometry-pipeline` repo name, it processes both behavior and fiber. New fiber-only acquisition is processed by [aind-fiber-photometry-harp-pipeline](https://github.com/AllenNeuralDynamics/aind-fiber-photometry-harp-pipeline) (the Fiber photometry row above). The Code Ocean link points to the released pipeline, which automatically resolves to the latest released version