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Template update for nf-core/tools v4.2.1 - #224

Merged

robert-a-forsyth merged 15 commits into

devfrom

template_update_4.2.1

Nov 3, 2026

Merged

Template update for nf-core/tools v4.2.1#224
robert-a-forsyth merged 15 commits into
devfrom
template_update_4.2.1

Commits on Oct 28, 2026
- Template update for nf-core/tools version 4.2.1
  ljwharbers
  committed
  0ab3233
- Merge nf-core/tools 4.2.1 template into dev
  
  ljwharbers
  and
  claude
  committed
  4a5ee9c
- Refresh stale extended-test snapshots
  
  ljwharbers
  and
  claude
  committed
  7c6e9fe
- Fill in PR number in CHANGELOG entry
  
  ljwharbers
  and
  claude
  committed
  c8db013
Commits on Oct 29, 2026
- Point manifest.diagram at the README metro map
  
  ljwharbers
  and
  claude
  committed
  ed1ddae
- Clear pipeline-level nf-core lint warnings, bump to 1.2.0dev
  
  ljwharbers
  and
  claude
  committed
  b38fdc7
- Fill in PR number in CHANGELOG entry
  
  ljwharbers
  and
  claude
  committed
  d038cf9
Commits on Nov 2, 2026
- Address #227 review: boolean autocorrelation, version sync, extended list
  
  ljwharbers
  and
  claude
  committed
  8f0714a
- CLAIR3: decide GPU mode from params.use_gpu
  
  ljwharbers
  and
  claude
  committed
  bd5dace
- Merge branch 'template_update_4.2.1' into chore/lint-cleanup
  ljwharbers
  committed
  f9e661e
- CLAIR3: GPU image v2.0.2_gpu -> v2.0.5_gpu
  
  ljwharbers
  and
  claude
  committed
  f1066e4
- Merge branch 'template_update_4.2.1' into chore/lint-cleanup
  ljwharbers
  committed
  b1aa043
- Document --use_gpu: every affected tool and the Clair3 GPU limit
  
  ljwharbers
  and
  claude
  committed
  0c1cf3f
- Merge branch 'template_update_4.2.1' into chore/lint-cleanup
  ljwharbers
  committed
  e8c6fa9
Commits on Nov 3, 2026
- Merge pull request #227 from IntGenomicsLab/chore/lint-cleanup
  robert-a-forsyth
  authored
  dd6bb1e

Commits

Commits on Oct 28, 2026

Commits on Oct 29, 2026

Commits on Nov 2, 2026

Commits on Nov 3, 2026